Query psy227
Match_columns 139
No_of_seqs 110 out of 469
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:24:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 2.7E-38 9.3E-43 264.4 9.8 98 15-138 57-154 (316)
2 2jry_A R11.6, I-superfamily co 18.5 47 0.0016 20.0 1.2 12 65-76 31-42 (46)
3 3oao_A Uncharacterized protein 14.7 57 0.002 23.8 1.2 22 118-139 84-105 (147)
4 3hgf_A Rhoptry protein fragmen 11.3 82 0.0028 21.8 1.0 19 75-93 57-75 (107)
5 3aub_A BPTI, bovine pancreatic 10.0 79 0.0027 19.0 0.5 11 65-75 31-41 (58)
6 2ddi_A WAP, follistatin/kazal, 9.8 80 0.0027 20.0 0.5 12 65-76 36-47 (70)
7 1bun_B BETA2-bungarotoxin; hyd 9.6 85 0.0029 19.0 0.6 10 66-75 34-43 (61)
8 2jot_A Huwentoxin-11; proteina 9.5 88 0.003 18.6 0.6 11 65-75 28-38 (55)
9 1dtx_A Alpha-dendrotoxin; pres 9.5 83 0.0028 18.9 0.5 10 66-75 34-43 (59)
10 1koz_A Voltage-dependent chann 9.4 99 0.0034 17.6 0.8 9 67-75 4-12 (36)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=2.7e-38 Score=264.40 Aligned_cols=98 Identities=36% Similarity=0.641 Sum_probs=89.1
Q ss_pred hccCchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCccchhhhcCCccccCCCcchHhHHHHHHhhhhhhhhhh
Q psy227 15 RLNGTREQGIVYALGSAAITYTLARGCADGTIFHCSCATPSKKATAKAIKNSFQWGGCGDNVRWGAQFARSFTDILENER 94 (139)
Q Consensus 15 ~~~gtREtAfvyAisSAgv~~~ItraCs~G~l~~CgC~~~~~~~~~~~~~~~~~WgGCsdnV~~G~~fsr~Fld~~e~~~ 94 (139)
+++|+||+||||||+||||+|+||+||++|.|..|+||...++++. .++|+||||||||.||++||+.|||++|..+
T Consensus 57 l~~g~REtAFv~AissAgv~~avtraCs~G~l~~C~Cd~~~~~~~~---~~~w~WgGCsdnv~~G~~fsr~F~D~~e~~~ 133 (316)
T 4f0a_B 57 LRSATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRIG---GRGWVWGGCSDNAEFGERISKLFVDGLETGQ 133 (316)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCCTTTTSEE---ETTEEECSCCCCHHHHHHHHHHHHHHHCCSS
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCc---ccCceeCCccchhHHHHHHHHHHhccccccc
Confidence 5689999999999999999999999999999999999988766543 2689999999999999999999999988643
Q ss_pred hhhhhHhHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHhhhhcC
Q psy227 95 DIQTQRNLRLIDAAMFDEKNNRNYMLNVMNLHNNKAGRKIDTYQ 138 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~mnlHNn~aGR~av~~~ 138 (139)
+++.+||||||+|||+||+++
T Consensus 134 -----------------------d~r~lmnlHNn~aGR~~v~~~ 154 (316)
T 4f0a_B 134 -----------------------DARALMNLHNNEAGRLAVKET 154 (316)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------cHHHHHHhhchHHHHHHHHhc
Confidence 789999999999999999864
No 2
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=18.49 E-value=47 Score=20.03 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=10.2
Q ss_pred CCccccCCCcch
Q psy227 65 NSFQWGGCGDNV 76 (139)
Q Consensus 65 ~~~~WgGCsdnV 76 (139)
..|.|.|||-+.
T Consensus 31 Ts~i~pgcst~~ 42 (46)
T 2jry_A 31 TNWILPGCSTSS 42 (46)
T ss_dssp CSSSSCSCCCCT
T ss_pred eeEEecCCcccc
Confidence 679999999765
No 3
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=14.74 E-value=57 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.230 Sum_probs=20.0
Q ss_pred hHHHHHHhhhhHHHHhhhhcCC
Q psy227 118 YMLNVMNLHNNKAGRKIDTYQP 139 (139)
Q Consensus 118 ~~~~~mnlHNn~aGR~av~~~~ 139 (139)
++..++...+.++|++.+.++|
T Consensus 84 El~~l~~FY~sp~Gkk~~~~~p 105 (147)
T 3oao_A 84 ELKDLNAFYQSPLGKKVLEKMP 105 (147)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHhH
Confidence 6788999999999999999876
No 4
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=11.26 E-value=82 Score=21.81 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=14.6
Q ss_pred chHhHHHHHHhhhhhhhhh
Q psy227 75 NVRWGAQFARSFTDILENE 93 (139)
Q Consensus 75 nV~~G~~fsr~Fld~~e~~ 93 (139)
|+.||..+...||+.-..+
T Consensus 57 NlSYg~SL~~LFL~qIdeE 75 (107)
T 3hgf_A 57 NMSYGKSLNKLFLEKIDEE 75 (107)
T ss_dssp HHHHTHHHHHHHHHHC---
T ss_pred chHHHHhHHHHHHHHHhHH
Confidence 7899999999999975543
No 5
>3aub_A BPTI, bovine pancreatic trypsin inhibitor; serine protease inhibitor, hydrolase inhibitor; 1.00A {Bos taurus} PDB: 3aui_A 3auh_A 3ci7_A
Probab=9.95 E-value=79 Score=18.96 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.6
Q ss_pred CCccccCCCcc
Q psy227 65 NSFQWGGCGDN 75 (139)
Q Consensus 65 ~~~~WgGCsdn 75 (139)
..|.|+||..|
T Consensus 31 ~~F~ygGC~gN 41 (58)
T 3aub_A 31 QAFVYGGVRAK 41 (58)
T ss_dssp EEEEECSSSCC
T ss_pred eEEecCCcCCC
Confidence 34789999876
No 6
>2ddi_A WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1; kunitz domain, protein binding; NMR {Homo sapiens} PDB: 2ddj_A
Probab=9.80 E-value=80 Score=19.96 Aligned_cols=12 Identities=42% Similarity=0.991 Sum_probs=9.1
Q ss_pred CCccccCCCcch
Q psy227 65 NSFQWGGCGDNV 76 (139)
Q Consensus 65 ~~~~WgGCsdnV 76 (139)
..|.|+||+.|-
T Consensus 36 ~~F~YgGC~GN~ 47 (70)
T 2ddi_A 36 HPFVYGGCEGNG 47 (70)
T ss_dssp EEEEECSSSCCS
T ss_pred eeeECCCcCCCC
Confidence 347899998773
No 7
>1bun_B BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A {Bungarus multicinctus} SCOP: g.8.1.1
Probab=9.58 E-value=85 Score=18.98 Aligned_cols=10 Identities=50% Similarity=1.391 Sum_probs=8.2
Q ss_pred CccccCCCcc
Q psy227 66 SFQWGGCGDN 75 (139)
Q Consensus 66 ~~~WgGCsdn 75 (139)
.|.|+||+.|
T Consensus 34 ~F~ygGC~gN 43 (61)
T 1bun_B 34 QFRYGGCNGN 43 (61)
T ss_dssp EEEECSCCSS
T ss_pred EEecCCcCCC
Confidence 4789999876
No 8
>2jot_A Huwentoxin-11; proteinase inhibitor; NMR {Ornithoctonus huwena}
Probab=9.54 E-value=88 Score=18.63 Aligned_cols=11 Identities=55% Similarity=1.337 Sum_probs=8.6
Q ss_pred CCccccCCCcc
Q psy227 65 NSFQWGGCGDN 75 (139)
Q Consensus 65 ~~~~WgGCsdn 75 (139)
..|.|+||..|
T Consensus 28 ~~F~ygGC~gN 38 (55)
T 2jot_A 28 AKFIYGGCGGN 38 (55)
T ss_dssp EEEECCSCSCS
T ss_pred cEeecCCcCCC
Confidence 34789999876
No 9
>1dtx_A Alpha-dendrotoxin; presynaptic neurotoxin; 2.20A {Dendroaspis angusticeps} SCOP: g.8.1.1 PDB: 1dem_A 1den_A
Probab=9.53 E-value=83 Score=18.89 Aligned_cols=10 Identities=60% Similarity=1.694 Sum_probs=8.2
Q ss_pred CccccCCCcc
Q psy227 66 SFQWGGCGDN 75 (139)
Q Consensus 66 ~~~WgGCsdn 75 (139)
.|.|+||+.|
T Consensus 34 ~F~y~GC~gN 43 (59)
T 1dtx_A 34 RFDWSGCGGN 43 (59)
T ss_dssp EEEECSSCCC
T ss_pred EeecCCcCCC
Confidence 4789999877
No 10
>1koz_A Voltage-dependent channel inhibitor; toxin, cystine knot; NMR {Synthetic} SCOP: g.3.6.2
Probab=9.44 E-value=99 Score=17.56 Aligned_cols=9 Identities=33% Similarity=1.007 Sum_probs=6.9
Q ss_pred ccccCCCcc
Q psy227 67 FQWGGCGDN 75 (139)
Q Consensus 67 ~~WgGCsdn 75 (139)
|-||||+.|
T Consensus 4 ~~~g~C~~~ 12 (36)
T 1koz_A 4 RFWGKCSQT 12 (36)
T ss_dssp CSSCBCCSS
T ss_pred ccccCCCCc
Confidence 678899765
Done!