RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy227
(139 letters)
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
frizzled, fatty acylation, glycosylation, signaling
protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
laevis}
Length = 316
Score = 68.5 bits (166), Expect = 9e-15
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 20 REQGIVYALGSAAITYTLARGCADGTIFHCSCATPSKKATAKAIKNSFQWGGCGDNVRWG 79
RE V+A+ SA + YTL R C+ G +C C + + WGGC DN +G
Sbjct: 62 RETSFVHAISSAGVMYTLTRNCSMGDFDNCGC---DDSRNGRIGGRGWVWGGCSDNAEFG 118
Query: 80 AQFARSFTDILENERDIQTQRNL 102
+ ++ F D LE +D + NL
Sbjct: 119 ERISKLFVDGLETGQDARALMNL 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 5e-04
Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 58/156 (37%)
Query: 4 VQAS----FCRR-------LFFRLNG--TREQGIVYALGSAAITYTLARGCADGTIFHCS 50
+Q + + L L G QG+V A+ A F
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--------TDSWESFF-- 293
Query: 51 CATPSKKATAKAIKNSFQWGGCGDNVRWGAQFARSFTDILENERDIQTQRNLRLIDAAMF 110
+ KAI F + G R + N L + +
Sbjct: 294 ------VSVRKAITVLF-FIGV----R--CY---------------EAYPNTSLPPSILE 325
Query: 111 DEKNNRN----YMLNVMNLHNNKAGRKID---TYQP 139
D N ML++ NL + ++ ++ P
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Score = 30.0 bits (67), Expect = 0.24
Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 43/115 (37%)
Query: 47 FHCSCATPSKKATAK-AIKNSFQWGGC-----------GDNVR----------------- 77
FH P+ K +KN+ + G ++R
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 78 ---WGAQFARSFTDILE----NERDIQ--TQRNL-----RLIDAAMFDEKNNRNY 118
W T IL+ + T RN R+I A D + +Y
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 27.1 bits (61), Expect = 2.0
Identities = 7/48 (14%), Positives = 11/48 (22%), Gaps = 9/48 (18%)
Query: 11 RLFFRLNGTREQGIVYALGSAAITYTLARGCADGTIFHCSCATPSKKA 58
RL F L ++G+ FH +
Sbjct: 269 RLHFAL---VDKGLAEVASFGLEEA------DRAGTFHAYVQADPARK 307
>2mcm_A Macromomycin; apoprotein; 1.50A {Streptomyces macromomyceticus}
SCOP: b.1.7.1
Length = 112
Score = 25.6 bits (55), Expect = 3.7
Identities = 15/58 (25%), Positives = 20/58 (34%)
Query: 23 GIVYALGSAAITYTLARGCADGTIFHCSCATPSKKATAKAIKNSFQWGGCGDNVRWGA 80
G VY +G A+ GC T + K + +SFQ D WG
Sbjct: 28 GTVYHVGQCAVVEPGVIGCDATTSTDVTADAAGKITAQLKVHSSFQAVVGADGTPWGT 85
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 26.6 bits (58), Expect = 3.7
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 68 QWGGCGDNVRWGAQFARSFTDILENERDIQTQRNLRLIDAAMFDEKNN 115
+NV W Q R + + Q L I +F+ +
Sbjct: 395 NNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVD 442
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 26.0 bits (58), Expect = 4.2
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 72 CGDNVRWGA 80
GD + WGA
Sbjct: 355 VGDQLLWGA 363
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 25.6 bits (57), Expect = 6.1
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 72 CGDNVRWGA 80
GD + WGA
Sbjct: 347 VGDQLLWGA 355
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 25.6 bits (57), Expect = 6.4
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 72 CGDNVRWGA 80
GD + WGA
Sbjct: 347 VGDQLLWGA 355
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural
genomics, nysgxrc target T1814, PSI, protein structure
initiative; 2.95A {Enterococcus faecalis} SCOP:
b.82.1.13
Length = 289
Score = 25.3 bits (55), Expect = 7.4
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 47 FHCSCATPSKKATAKAIKNSFQWGGCGDNVRWGAQFARSFTDI 89
H T + SF W CG+N+ + + +
Sbjct: 247 IHSGVGTSN---------YSFIWAMCGENITYTDMDMVAMDQL 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.413
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,071,177
Number of extensions: 109678
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 10
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)