RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy227
         (139 letters)



>d1ckqa_ c.52.1.1 (A:) Restriction endonuclease EcoRI {Escherichia
           coli [TaxId: 562]}
          Length = 261

 Score = 24.9 bits (54), Expect = 4.1
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 105 IDAAMFDEKNNRNYMLNVMNLHNNKAG 131
           + AA +    N N  +N    H +K+ 
Sbjct: 188 LTAANYGMPINSNLCINKFVNHKDKSI 214


>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score = 24.8 bits (53), Expect = 4.8
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 10  RRLFFRLNGTREQGIVYALGSAAITYTLARGCADG 44
            R   R   +  + +++  G      T+  GCA  
Sbjct: 199 EREQLRFGSSNTE-VIHNYGHGGYGLTIHWGCALE 232


>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
          homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 36

 Score = 22.0 bits (47), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 35 YTLARGCADGTIFHCSC 51
          Y L R C +G  FH SC
Sbjct: 19 YVLERLCVNGHFFHRSC 35


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 23.6 bits (51), Expect = 9.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 61  KAIKNSFQWGGCGDNVRW 78
           K  +  F W G G+N R 
Sbjct: 260 KDKEGKFLWPGFGENSRV 277


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 506,026
Number of extensions: 20981
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.4 bits)