Query psy2272
Match_columns 276
No_of_seqs 164 out of 515
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 20:29:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7q_A Translation initiation 100.0 3.9E-38 1.3E-42 262.9 10.0 103 1-104 40-142 (143)
2 2dgy_A MGC11102 protein; EIF-1 100.0 5.9E-31 2E-35 210.9 9.0 83 1-83 24-108 (111)
3 1jt8_A EIF-1A, probable transl 100.0 1.1E-29 3.8E-34 201.3 2.5 70 1-70 29-99 (102)
4 2oqk_A Putative translation in 99.9 8.1E-27 2.8E-31 186.7 7.3 77 1-77 41-117 (117)
5 3i4o_A Translation initiation 99.8 2.2E-21 7.5E-26 148.1 4.5 56 1-56 23-79 (79)
6 1ah9_A IF1, initiation factor 99.7 6.2E-19 2.1E-23 129.0 4.9 56 1-56 15-71 (71)
7 1hr0_W Translation initiation 99.7 3.2E-19 1.1E-23 131.1 0.5 55 1-55 16-71 (71)
8 1t9h_A YLOQ, probable GTPase E 95.7 0.018 6.2E-07 51.4 6.5 52 4-57 20-75 (307)
9 2rcn_A Probable GTPase ENGC; Y 93.5 0.15 5.3E-06 46.6 7.0 51 4-57 57-111 (358)
10 2yv5_A YJEQ protein; hydrolase 93.3 0.15 5E-06 44.3 6.2 47 4-54 16-65 (302)
11 2k52_A Uncharacterized protein 82.2 1.1 3.8E-05 32.0 3.3 52 5-57 20-72 (80)
12 2wfw_A ARC; ATP-binding protei 73.5 2.7 9.2E-05 35.7 3.6 42 1-42 76-135 (153)
13 2khi_A 30S ribosomal protein S 68.0 3.9 0.00013 31.2 3.1 51 5-56 45-101 (115)
14 3m9b_A Proteasome-associated A 50.0 16 0.00054 33.1 4.3 41 2-42 168-225 (251)
15 3v2d_Y 50S ribosomal protein L 45.9 15 0.00052 29.3 3.2 35 25-59 1-35 (110)
16 2zd7_A VPS75, vacuolar protein 45.2 2.2 7.6E-05 37.8 -2.0 47 57-103 197-243 (264)
17 2vqe_L 30S ribosomal protein S 42.9 28 0.00094 29.2 4.4 32 7-41 56-87 (135)
18 2f86_B Hypothetical protein K1 34.4 18 0.00061 28.4 1.9 21 115-135 119-139 (143)
19 2ovm_B NCOR, progesterone rece 34.2 25 0.00084 22.4 2.1 23 207-229 1-26 (26)
20 2ayu_A Nucleosome assembly pro 31.4 6.5 0.00022 37.4 -1.3 16 59-74 343-358 (417)
21 3iz5_Y 60S ribosomal protein L 29.5 44 0.0015 28.2 3.6 31 28-58 46-76 (150)
22 1vq8_T 50S ribosomal protein L 29.2 49 0.0017 26.8 3.7 32 27-58 39-70 (120)
23 3ke7_A Putative ketosteroid is 29.0 31 0.001 27.2 2.4 15 116-130 117-131 (134)
24 1yfb_A Transition state regula 26.5 30 0.001 24.5 1.7 25 19-43 24-48 (59)
25 3j21_U 50S ribosomal protein L 26.2 50 0.0017 26.7 3.2 40 19-58 29-73 (121)
26 3jsy_A Acidic ribosomal protei 25.2 63 0.0021 27.5 3.8 47 24-81 144-191 (213)
27 3u5e_Y L33, YL33, 60S ribosoma 25.0 64 0.0022 26.4 3.7 31 28-58 47-77 (127)
28 3tzu_A GCVH, glycine cleavage 24.9 13 0.00044 30.5 -0.5 29 28-56 20-56 (137)
29 2gpr_A Glucose-permease IIA co 24.8 1.1E+02 0.0037 25.1 5.1 51 7-70 65-122 (154)
30 1ssf_A Transformation related 24.7 76 0.0026 27.1 4.2 21 2-22 34-54 (156)
31 1ax3_A Iiaglc, glucose permeas 24.2 1.4E+02 0.0049 24.7 5.8 51 7-70 70-127 (162)
32 2k4k_A GSP13, general stress p 24.0 67 0.0023 24.9 3.5 50 7-56 23-77 (130)
33 2fhd_A RAD9 homolog, DNA repai 23.2 96 0.0033 26.5 4.5 37 2-40 37-73 (153)
34 2l66_A SSO7C4, transcriptional 23.0 23 0.00078 23.9 0.6 25 19-43 14-38 (53)
35 4a17_S RPL26, 60S ribosomal pr 22.8 74 0.0025 26.4 3.7 31 28-58 46-76 (135)
36 1b12_A Signal peptidase I; ser 22.3 25 0.00084 29.8 0.8 27 31-57 20-61 (248)
37 1kca_A Repressor protein CI; g 22.2 32 0.0011 25.6 1.3 42 14-56 11-57 (109)
38 3h43_A Proteasome-activating n 21.5 1E+02 0.0035 23.0 4.0 42 2-44 28-69 (85)
39 3j20_N 30S ribosomal protein S 21.5 1.2E+02 0.0042 25.6 4.8 34 7-41 73-107 (147)
40 2wg5_A General control protein 21.2 92 0.0031 24.0 3.8 43 2-45 47-89 (109)
41 3j21_k Acidic ribosomal protei 21.1 78 0.0027 28.9 3.9 50 21-81 145-195 (339)
42 2hnf_A Repressor protein CI101 21.0 35 0.0012 26.0 1.3 42 14-56 42-88 (133)
43 1f3z_A EIIA-GLC, glucose-speci 20.9 1.5E+02 0.0051 24.6 5.2 49 7-68 70-125 (161)
44 1umu_A UMUD'; induced mutagene 20.6 54 0.0018 24.2 2.2 40 14-54 25-64 (116)
45 2zkr_t 60S ribosomal protein L 20.0 69 0.0024 26.7 3.0 31 28-58 46-77 (145)
No 1
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=100.00 E-value=3.9e-38 Score=262.94 Aligned_cols=103 Identities=72% Similarity=1.172 Sum_probs=94.0
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCcccccccccc
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVT 80 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdt 80 (276)
||||++|+|+|+||+++||||||||||+|||++||+|+|+|||||++||+|||||+++|+++|+++|+||++|.+|++++
T Consensus 40 ~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~ 119 (143)
T 1d7q_A 40 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 119 (143)
T ss_dssp ECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCS
T ss_pred EcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeeecCCCCCcccccc
Q psy2272 81 FVEEGYDEDIEFGDEISDDEEGNA 104 (276)
Q Consensus 81 fg~~~~dd~ieFd~~~d~~~d~~~ 104 (276)
|+ ++++++++|++++++++|+|+
T Consensus 120 ~~-~~~~~~~~f~~~~~~~~~~~~ 142 (143)
T 1d7q_A 120 FG-PGDDDEIQFDDIGDDDEDIDD 142 (143)
T ss_dssp SS-CCCCCCCCCCCSCSSCCSCSC
T ss_pred cc-CCCCccceeccCccchhcccc
Confidence 97 444778999776655444433
No 2
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=5.9e-31 Score=210.93 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=77.3
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC-CCeEEEEEecCHhHHHHHHHcCCCCccccccc-c
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDEARNLKTYGEFPETVRIND-T 78 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ-D~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNE-t 78 (276)
||||++|+|+|+||+++||||||||||+|||++||+|+|++|||| ++||+|+|||+++||++|+++|+||++|..++ .
T Consensus 24 ~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F~~~~~~ 103 (111)
T 2dgy_A 24 TPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEK 103 (111)
T ss_dssp CCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHHHHHHTT
T ss_pred eCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHHHHHHHHHcCCCChHHhhcccc
Confidence 799999999999999999999999999999999999999999999 89999999999999999999999999998553 4
Q ss_pred ccccc
Q psy2272 79 VTFVE 83 (276)
Q Consensus 79 dtfg~ 83 (276)
+++|+
T Consensus 104 ~~~~~ 108 (111)
T 2dgy_A 104 HNSGP 108 (111)
T ss_dssp CCSSS
T ss_pred cCcCC
Confidence 45543
No 3
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.95 E-value=1.1e-29 Score=201.28 Aligned_cols=70 Identities=36% Similarity=0.765 Sum_probs=69.2
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC-CCeEEEEEecCHhHHHHHHHcCCCC
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDEARNLKTYGEFP 70 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ-D~KGDIIyRYt~DEIR~LKk~GeLP 70 (276)
||||++|+|+|+||+++||||||||||+|||++||+|+|++|||| ++||+|+|||+++|+++|+++|+||
T Consensus 29 ~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~de~~~L~k~g~~p 99 (102)
T 1jt8_A 29 MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLD 99 (102)
T ss_dssp SSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCSHHHHHHHHHHHH
T ss_pred EcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCHHHHHHHHHcCCCc
Confidence 699999999999999999999999999999999999999999999 8999999999999999999999999
No 4
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.93 E-value=8.1e-27 Score=186.72 Aligned_cols=77 Identities=74% Similarity=1.332 Sum_probs=73.7
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCccccccc
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRIND 77 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNE 77 (276)
++||++|+|+|+||++++||||||||++|||.+||+|+|+++||++.||+|+++|.++||++|+++|+||++|.|||
T Consensus 41 ~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~~ 117 (117)
T 2oqk_A 41 MLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPDEARALKSKGEIPETTKINE 117 (117)
T ss_dssp EEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCHHHHHHHHHTTSSCTTCCC--
T ss_pred EcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEechHHHHHHHHcCCCCcccCccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.83 E-value=2.2e-21 Score=148.10 Aligned_cols=56 Identities=27% Similarity=0.460 Sum_probs=54.3
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT 56 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt 56 (276)
+|||++|.|+|+||++++||||||||| +|||.+||+|+|++||||++||+|||||.
T Consensus 23 ~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 23 PLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp EETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred EcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence 479999999999999999999999999 99999999999999999999999999994
No 6
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.75 E-value=6.2e-19 Score=129.05 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=53.6
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYT 56 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt 56 (276)
++||+.|.|+|+||++++||||||||+ +|||.+||+|+|+++||++.||+|+|||+
T Consensus 15 ~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~ 71 (71)
T 1ah9_A 15 TLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp ECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred EeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence 479999999999999999999999998 59999999999999999999999999985
No 7
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.73 E-value=3.2e-19 Score=131.10 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=53.4
Q ss_pred CCCCceEEEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEec
Q psy2272 1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY 55 (276)
Q Consensus 1 MLGNgrfEVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRY 55 (276)
++||+.|.|+|+||++++||||||||| +|||.+||+|+|+++||++.||+|+|||
T Consensus 16 ~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~ 71 (71)
T 1hr0_W 16 ALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred EeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence 589999999999999999999999998 9999999999999999999999999997
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.68 E-value=0.018 Score=51.45 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=42.8
Q ss_pred CceEEEEeCC---CCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecCH
Q psy2272 4 NGRLEAMCFD---GTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTP 57 (276)
Q Consensus 4 NgrfEVeC~D---G~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~ 57 (276)
++.|.|.+.+ |....|+++|+||+ ++....||.|.+++.+ +..|-|...+.+
T Consensus 20 ~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R 75 (307)
T 1t9h_A 20 SGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKER 75 (307)
T ss_dssp TTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCC
T ss_pred CCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcch
Confidence 5789999887 88999999999997 6778899999998653 457888877643
No 9
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.52 E-value=0.15 Score=46.64 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=39.5
Q ss_pred CceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCCC----CeEEEEEecCH
Q psy2272 4 NGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQD----AKADVILKYTP 57 (276)
Q Consensus 4 NgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD----~KGDIIyRYt~ 57 (276)
++.|.|...+|..+.|+++|++++ +..||.|.+++.+.+. .+|-|+..+.+
T Consensus 57 ~~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R 111 (358)
T 2rcn_A 57 GMHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHER 111 (358)
T ss_dssp TTEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECCC
T ss_pred CCEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeCC
Confidence 478999999999999999999986 8899999998754321 13878777643
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.26 E-value=0.15 Score=44.27 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=36.5
Q ss_pred CceE--EEEeCCCCEEEEEecccccc-eeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272 4 NGRL--EAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILK 54 (276)
Q Consensus 4 Ngrf--EVeC~DG~kRLAhIpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyR 54 (276)
++.| .|. .+|..+.|+++|++|+ .. ...||.|.+++++ +..|-|...
T Consensus 16 ~~~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~--~~~g~I~~i 65 (302)
T 2yv5_A 16 AQMIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD--PNTFAIEEV 65 (302)
T ss_dssp TTEEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE--TTEEEEEEE
T ss_pred CCeEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc--CCeEEEEee
Confidence 5777 555 7788999999999997 45 8899999999875 346655543
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=82.23 E-value=1.1 Score=32.01 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCEEEEEeccccccee-eeecCCEEEEEeccCCCCeEEEEEecCH
Q psy2272 5 GRLEAMCFDGTKRLCHIRGKLRKKV-WINQGDIILIGLRDYQDAKADVILKYTP 57 (276)
Q Consensus 5 grfEVeC~DG~kRLAhIpGKMRKKV-WIk~GDiVLVEprDYQD~KGDIIyRYt~ 57 (276)
|.| |.+.+|..-++|++.=...++ .++.||.|.|.....+..+++|.+.+.+
T Consensus 20 G~f-V~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 20 GAF-INLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp EEE-EEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred EEE-EEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 444 888889999999987433344 5889999999999998888888876643
No 12
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=73.51 E-value=2.7 Score=35.70 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=32.6
Q ss_pred CCCC-ceEEEEeCCCCEEEEEecccccce-e----------------eeecCCEEEEEec
Q psy2272 1 MLGN-GRLEAMCFDGTKRLCHIRGKLRKK-V----------------WINQGDIILIGLR 42 (276)
Q Consensus 1 MLGN-grfEVeC~DG~kRLAhIpGKMRKK-V----------------WIk~GDiVLVEpr 42 (276)
+|+. +|..|.-..|.+|+++++|.++.. + .+++||-|+|+++
T Consensus 76 vL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~r 135 (153)
T 2wfw_A 76 VLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTK 135 (153)
T ss_dssp ECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETT
T ss_pred EeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCC
Confidence 3667 799999999999999999999763 2 6999999999875
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=68.00 E-value=3.9 Score=31.17 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=39.5
Q ss_pred ceEEEEeCCCCEEEEEecccc-----cc-eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272 5 GRLEAMCFDGTKRLCHIRGKL-----RK-KVWINQGDIILIGLRDYQDAKADVILKYT 56 (276)
Q Consensus 5 grfEVeC~DG~kRLAhIpGKM-----RK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt 56 (276)
|.| |.+.+|..-++|++.-. ++ .-.++.||.|.|.....+..++.|.+...
T Consensus 45 G~F-V~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk 101 (115)
T 2khi_A 45 GCF-VEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp EEE-EECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred EEE-EEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEE
Confidence 444 88889999999987632 22 34688999999999999887888887654
No 14
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.00 E-value=16 Score=33.11 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=34.4
Q ss_pred C-CCceEEEEeCCCCEEEEEecccccce--e--------------eeecCCEEEEEec
Q psy2272 2 L-GNGRLEAMCFDGTKRLCHIRGKLRKK--V--------------WINQGDIILIGLR 42 (276)
Q Consensus 2 L-GNgrfEVeC~DG~kRLAhIpGKMRKK--V--------------WIk~GDiVLVEpr 42 (276)
| +++|.-|.-..|.+|+++++|.+... . .+++||-|+|.++
T Consensus 168 l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~r 225 (251)
T 3m9b_A 168 LADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTK 225 (251)
T ss_dssp CTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTT
T ss_pred ecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCC
Confidence 5 45699999999999999999999753 1 6899999999765
No 15
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=45.87 E-value=15 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=27.2
Q ss_pred ccceeeeecCCEEEEEeccCCCCeEEEEEecCHhH
Q psy2272 25 LRKKVWINQGDIILIGLRDYQDAKADVILKYTPDE 59 (276)
Q Consensus 25 MRKKVWIk~GDiVLVEprDYQD~KGDIIyRYt~DE 59 (276)
|+.++.|+.||.|.|--=.+-...|.|+..|...+
T Consensus 1 ~~~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 35 (110)
T 3v2d_Y 1 MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKY 35 (110)
T ss_dssp CCCCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGT
T ss_pred CCcccccCCCCEEEEeEcCCCCeEeEEEEEECCCC
Confidence 45567799999999876666667899999886543
No 16
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=45.17 E-value=2.2 Score=37.76 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=14.1
Q ss_pred HhHHHHHHHcCCCCcccccccccccccCCCCCCeeecCCCCCccccc
Q psy2272 57 PDEARNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEEGN 103 (276)
Q Consensus 57 ~DEIR~LKk~GeLPEeFkiNEtdtfg~~~~dd~ieFd~~~d~~~d~~ 103 (276)
.+++-.+.+..+||.-+.-=-...-..++++++-+|+++++++|+++
T Consensus 197 d~eig~~Ikd~I~P~al~yf~g~~~d~~~~~~d~e~~~e~e~~d~~~ 243 (264)
T 2zd7_A 197 GDSLASLFSEEIYPFCVKYYAEAQRDLEDEEGESGLSADGDSEDDDG 243 (264)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTTCC------------------
T ss_pred chhHHHHHHhhhccCHHHHhcccccccccCccccccccccccccccc
Confidence 45677777777777654322111111222233446665444444434
No 17
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=42.86 E-value=28 Score=29.22 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=28.1
Q ss_pred EEEEeCCCCEEEEEecccccceeeeecCCEEEEEe
Q psy2272 7 LEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGL 41 (276)
Q Consensus 7 fEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEp 41 (276)
.+|++.||.++.|+|||-=. .|.+-|.|||.-
T Consensus 56 arVrL~ngk~VtAyIPG~Gh---nlqEhs~VLVrG 87 (135)
T 2vqe_L 56 AKVRLTSGYEVTAYIPGEGH---NLQEHSVVLIRG 87 (135)
T ss_dssp CEEEETTSCEEEEECCSSCC---CCCTTCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCCC---ccCcCCEEEEcC
Confidence 47899999999999999873 689999999984
No 18
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=34.42 E-value=18 Score=28.37 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=12.2
Q ss_pred CCCCeEEEEEeeecccccccc
Q psy2272 115 SKFPWFSIHFKLSFLKKVGTV 135 (276)
Q Consensus 115 ~~~~~~~~~~~~s~~~~~~~~ 135 (276)
..+.|..+|+|+|.+...|+.
T Consensus 119 ~~g~WkivH~H~S~~~~~~~~ 139 (143)
T 2f86_B 119 KQGRWVCVHVHRSTQPSTNTT 139 (143)
T ss_dssp ETTEEEEEEEEEEC-------
T ss_pred eCCcEEEEEEeECCCCCCCce
Confidence 346799999999998876654
No 19
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=34.24 E-value=25 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=17.0
Q ss_pred CCCccccc---cHHHHHHHHhCCCCC
Q psy2272 207 NQPFQENK---NLKRVIRHLLAPKLD 229 (276)
Q Consensus 207 ~~~~~~~~---~~~~~~~~~~~~~~~ 229 (276)
+|||+|+. .|..+||..|.-|.|
T Consensus 1 ~~s~~e~~~~~gleaiirkalmg~yd 26 (26)
T 2ovm_B 1 GHSFADPASNLGLEDIIRKALMGSFX 26 (26)
T ss_pred CCCCCCCccccCHHHHHHHHHhhccC
Confidence 57787654 488999998876654
No 20
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=31.43 E-value=6.5 Score=37.37 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=13.4
Q ss_pred HHHHHHHcCCCCcccc
Q psy2272 59 EARNLKTYGEFPETVR 74 (276)
Q Consensus 59 EIR~LKk~GeLPEeFk 74 (276)
||-.+.+..+||.-+.
T Consensus 343 eIG~~Ikd~IiP~AV~ 358 (417)
T 2ayu_A 343 SIGEQLKDKLIPRAVD 358 (417)
T ss_dssp HHHHHHHHTTTTTHHH
T ss_pred HHHHHHHhhccccHHH
Confidence 6889999999998654
No 21
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=29.46 E-value=44 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=26.4
Q ss_pred eeeeecCCEEEEEeccCCCCeEEEEEecCHh
Q psy2272 28 KVWINQGDIILIGLRDYQDAKADVILKYTPD 58 (276)
Q Consensus 28 KVWIk~GDiVLVEprDYQD~KGDIIyRYt~D 58 (276)
++.|+.||.|.|--=.+-...|.|+-.|...
T Consensus 46 s~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 46 SIPIRKDDEVQVVRGSYKGREGKVVQVYRRR 76 (150)
T ss_dssp EEECCSSSEEEECSSTTTTCEEEEEEEETTT
T ss_pred ccccCCCCEEEEeecCCCCccceEEEEEcCC
Confidence 6899999999998877777789999988654
No 22
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=29.21 E-value=49 Score=26.75 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=26.6
Q ss_pred ceeeeecCCEEEEEeccCCCCeEEEEEecCHh
Q psy2272 27 KKVWINQGDIILIGLRDYQDAKADVILKYTPD 58 (276)
Q Consensus 27 KKVWIk~GDiVLVEprDYQD~KGDIIyRYt~D 58 (276)
+++.|+.||.|.|--=++-...|.|+..|...
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~ 70 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDK 70 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEECCC
Confidence 36889999999998777777899999988654
No 23
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=29.00 E-value=31 Score=27.15 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.7
Q ss_pred CCCeEEEEEeeeccc
Q psy2272 116 KFPWFSIHFKLSFLK 130 (276)
Q Consensus 116 ~~~~~~~~~~~s~~~ 130 (276)
.+.|..+|.|+|+++
T Consensus 117 dG~W~ivH~H~S~~~ 131 (134)
T 3ke7_A 117 DNQWKIIQTHWSYVK 131 (134)
T ss_dssp TSBEEEEEEEEEESS
T ss_pred CCcEEEEEEeecccc
Confidence 778999999999986
No 24
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=26.47 E-value=30 Score=24.48 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.9
Q ss_pred EEecccccceeeeecCCEEEEEecc
Q psy2272 19 CHIRGKLRKKVWINQGDIILIGLRD 43 (276)
Q Consensus 19 AhIpGKMRKKVWIk~GDiVLVEprD 43 (276)
..||-.+|+++-|.+||.|.+...+
T Consensus 24 ItIPkeiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 24 VVIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp EECCHHHHHHTTCCTTCEEEEEEET
T ss_pred EEeCHHHHHHcCCCCCCEEEEEEEC
Confidence 4689999999999999999988853
No 25
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.18 E-value=50 Score=26.72 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.4
Q ss_pred EEecccccc-----eeeeecCCEEEEEeccCCCCeEEEEEecCHh
Q psy2272 19 CHIRGKLRK-----KVWINQGDIILIGLRDYQDAKADVILKYTPD 58 (276)
Q Consensus 19 AhIpGKMRK-----KVWIk~GDiVLVEprDYQD~KGDIIyRYt~D 58 (276)
|.++--+|. ++.|+.||.|.|--=.+-...|.|+..|.+.
T Consensus 29 a~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 29 APLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKR 73 (121)
T ss_dssp EEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTT
T ss_pred CcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecC
Confidence 445544443 5899999999987666656689999988654
No 26
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=25.19 E-value=63 Score=27.51 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=33.5
Q ss_pred cccc-eeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCccccccccccc
Q psy2272 24 KLRK-KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTF 81 (276)
Q Consensus 24 KMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdtf 81 (276)
|+.| +|+| ..|+++|. +|+ +.+++|++-|+.-|.=|-+|++.=...+
T Consensus 144 ki~~G~I~i-~~d~~v~k-------~G~---~v~~~~A~lL~~l~i~p~~~~l~l~~~~ 191 (213)
T 3jsy_A 144 AIEKGKIAI-KEDKVVVK-------KGE---VVSPKLAAVLDRLGIKPIKVGLNILAVY 191 (213)
T ss_dssp EEETTEEEE-CSCEEEEC-------TTS---BCCHHHHHHHHHTTCCCEEESCEEEEEE
T ss_pred EeecCeEEE-ccceEEEe-------cCC---CcCHHHHHHHHHcCCCcEEEEEEEEEEE
Confidence 3344 5666 44555543 444 4689999999999999999998865554
No 27
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=24.96 E-value=64 Score=26.44 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=26.3
Q ss_pred eeeeecCCEEEEEeccCCCCeEEEEEecCHh
Q psy2272 28 KVWINQGDIILIGLRDYQDAKADVILKYTPD 58 (276)
Q Consensus 28 KVWIk~GDiVLVEprDYQD~KGDIIyRYt~D 58 (276)
.+.|+.||.|.|--=.+-...|.|+-.|.+.
T Consensus 47 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 47 ALPIRRDDEVLVVRGSKKGQEGKISSVYRLK 77 (127)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEEGGG
T ss_pred cccccCCCEEEEeecCCCCccceEEEEECCC
Confidence 6899999999998877767789999988654
No 28
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=24.92 E-value=13 Score=30.53 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=25.4
Q ss_pred eeeee-------cCCEEEEEeccC-CCCeEEEEEecC
Q psy2272 28 KVWIN-------QGDIILIGLRDY-QDAKADVILKYT 56 (276)
Q Consensus 28 KVWIk-------~GDiVLVEprDY-QD~KGDIIyRYt 56 (276)
+.||+ .||.+.|...+| |+.-|||+|.--
T Consensus 20 HeWv~~~~~~~~e~~~~~VGITd~Aq~~lGdiv~Vel 56 (137)
T 3tzu_A 20 HEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQL 56 (137)
T ss_dssp SEEESCCTTCCCCSSCEEEEECHHHHHHHCSEEEEEC
T ss_pred CEEEEccCcccccCCEEEEeeCHHHHhhcCCeEEEEc
Confidence 89998 699999999999 577899999843
No 29
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=24.75 E-value=1.1e+02 Score=25.14 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=35.0
Q ss_pred EEEEeCCCCEEEEEeccc----ccc---eeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCC
Q psy2272 7 LEAMCFDGTKRLCHIRGK----LRK---KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFP 70 (276)
Q Consensus 7 fEVeC~DG~kRLAhIpGK----MRK---KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLP 70 (276)
+-++..+|.+.|.|| |- |+- .+++++||.| ++|+.+.++..+.+ ++.|+=+
T Consensus 65 igi~~~~G~evLiHi-GidTv~l~G~gF~~~V~~Gd~V---------~~G~~L~~~d~~~i---~~~g~~~ 122 (154)
T 2gpr_A 65 FGIQTKSGVEILLHI-GLDTVSLDGNGFESFVTQDQEV---------NAGDKLVTVDLKSV---AKKVPSI 122 (154)
T ss_dssp EEEECTTSCEEEEEC-SSSGGGGTTCSEEECCCTTCEE---------CTTCEEEEECHHHH---HHHSSCC
T ss_pred EEEEcCCCCEEEEEE-CcchhhcCCCceEEEEcCCCEE---------cCCCEEEEECHHHH---HhcCCCC
Confidence 445667999999998 62 221 5778888877 47888888876655 4556544
No 30
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=24.69 E-value=76 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.1
Q ss_pred CCCceEEEEeCCCCEEEEEec
Q psy2272 2 LGNGRLEAMCFDGTKRLCHIR 22 (276)
Q Consensus 2 LGNgrfEVeC~DG~kRLAhIp 22 (276)
+++++|+|...||..-.+..+
T Consensus 34 ~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 34 VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp CTTTEEEEECTTSCEEEEETT
T ss_pred ccCCEEEEEEcCCCeeEeecc
Confidence 689999999999998765433
No 31
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=24.23 E-value=1.4e+02 Score=24.68 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=35.9
Q ss_pred EEEEeCCCCEEEEEeccc----ccc---eeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCC
Q psy2272 7 LEAMCFDGTKRLCHIRGK----LRK---KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFP 70 (276)
Q Consensus 7 fEVeC~DG~kRLAhIpGK----MRK---KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLP 70 (276)
+-++..+|.+.|.|| |- |+- .+++++||.| ++|+.+.++..+.+ ++.|+=+
T Consensus 70 igi~t~~G~evLiHI-GidTV~l~G~gF~~~V~~Gd~V---------~~G~~L~~~d~~~i---~~~g~~~ 127 (162)
T 1ax3_A 70 IGLQSDGGREILIHF-GIDTVSLKGEGFTSFVSEGDRV---------EPGQKLLEVDLDAV---KPNVPSL 127 (162)
T ss_dssp EEEESSSSCEEEEEC-SSSTTTTTTTTEEESCCCCSEE---------CSEEEEEEECHHHH---GGGSSCC
T ss_pred EEEEcCCCCEEEEEE-CccchhcCCCccEEEEeCCCEE---------cCCCEEEEECHHHH---HhcCCCC
Confidence 445667899999998 62 221 5688888877 58999999976665 5667544
No 32
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=23.97 E-value=67 Score=24.93 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=37.6
Q ss_pred EEEEeCCCCEEEEEecccccc-----eeeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272 7 LEAMCFDGTKRLCHIRGKLRK-----KVWINQGDIILIGLRDYQDAKADVILKYT 56 (276)
Q Consensus 7 fEVeC~DG~kRLAhIpGKMRK-----KVWIk~GDiVLVEprDYQD~KGDIIyRYt 56 (276)
+-|.+.+|..-++|++-=... .-.++.||.|.|.....+..++.|.+-..
T Consensus 23 ~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 23 AFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp EEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred EEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 347888899999998743221 23588999999999988877778877654
No 33
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=23.21 E-value=96 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEE
Q psy2272 2 LGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIG 40 (276)
Q Consensus 2 LGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVE 40 (276)
.++.++.|...|+.+- .|.-.--|++-++.||.|.|.
T Consensus 37 ~~~~~y~VrFdDs~~~--~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 37 TSSIMYKVQFDDATMS--TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp CCBCEEEEEETTSCEE--EEETTSEEESCCCTTCEEEET
T ss_pred cCCeEEEEEEcCCCCC--ccChhhceeeeeecCCEEEEC
Confidence 4678999999999777 555555567889999999998
No 34
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.05 E-value=23 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.5
Q ss_pred EEecccccceeeeecCCEEEEEecc
Q psy2272 19 CHIRGKLRKKVWINQGDIILIGLRD 43 (276)
Q Consensus 19 AhIpGKMRKKVWIk~GDiVLVEprD 43 (276)
..||-.+|+++-|.+||.|.+...+
T Consensus 14 i~IPk~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 14 VTIPAKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp BCCCHHHHHHSCCCTTCEEEEEECS
T ss_pred EEeCHHHHHHcCcCCCCEEEEEEEC
Confidence 3588899999999999999998764
No 35
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=22.77 E-value=74 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=26.3
Q ss_pred eeeeecCCEEEEEeccCCCCeEEEEEecCHh
Q psy2272 28 KVWINQGDIILIGLRDYQDAKADVILKYTPD 58 (276)
Q Consensus 28 KVWIk~GDiVLVEprDYQD~KGDIIyRYt~D 58 (276)
.+.|+.||.|.|--=.+-...|.|+-.|.+.
T Consensus 46 s~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 76 (135)
T 4a17_S 46 SMPVRKDDEVLIVRGKFKGNKGKVTQVYRKK 76 (135)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred cccccCCCEEEEeecCCCCceeeEEEEEcCC
Confidence 6899999999998877767789999988654
No 36
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=22.28 E-value=25 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=18.7
Q ss_pred eecCCEEEEEeccC---------------CCCeEEEEEecCH
Q psy2272 31 INQGDIILIGLRDY---------------QDAKADVILKYTP 57 (276)
Q Consensus 31 Ik~GDiVLVEprDY---------------QD~KGDIIyRYt~ 57 (276)
+..||+|+|....| ...+||||.-..+
T Consensus 20 l~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p 61 (248)
T 1b12_A 20 LLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYP 61 (248)
T ss_dssp SCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECT
T ss_pred ccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeC
Confidence 46799999988754 3468887654433
No 37
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=22.19 E-value=32 Score=25.62 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=26.5
Q ss_pred CCEEEEEecccccce-----eeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272 14 GTKRLCHIRGKLRKK-----VWINQGDIILIGLRDYQDAKADVILKYT 56 (276)
Q Consensus 14 G~kRLAhIpGKMRKK-----VWIk~GDiVLVEprDYQD~KGDIIyRYt 56 (276)
+..+..++.|-=... --|..||+|+|.+.. ....|+|+.-..
T Consensus 11 ~~~f~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~~-~~~~Gdivv~~~ 57 (109)
T 1kca_A 11 DSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ-AVEPGDFCIARL 57 (109)
T ss_dssp SSCEEEECCSSTTCCCTTCSSCCCTTCEEEEETTS-CCCTTCEEEEEC
T ss_pred CCEEEEEEeCcCcCCCCCCCCeeCCCCEEEEecCC-cCCCCCEEEEEE
Confidence 345556666643321 468899999998764 355777765544
No 38
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=21.47 E-value=1e+02 Score=22.96 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccC
Q psy2272 2 LGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDY 44 (276)
Q Consensus 2 LGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDY 44 (276)
++.+.+-|....|.+..+.+.+.+.+. -+++|+.|.+-..-|
T Consensus 28 ~dd~~~iVkss~g~~~~V~v~~~Vd~~-~LkpG~rVaLn~~s~ 69 (85)
T 3h43_A 28 VGERKVVVKSSTGPSFLVNVSHFVNPD-DLAPGKRVCLNQQTL 69 (85)
T ss_dssp EETTEEEEEETTSSEEEEEBCTTSCGG-GCCTTCEEEECTTTC
T ss_pred cCCCEEEEEeCCCCeEEEEecCccCHH-HCCCCCEEEECCccc
Confidence 456788999999999999999988752 358999998755433
No 39
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.47 E-value=1.2e+02 Score=25.64 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=27.6
Q ss_pred EEEEeC-CCCEEEEEecccccceeeeecCCEEEEEe
Q psy2272 7 LEAMCF-DGTKRLCHIRGKLRKKVWINQGDIILIGL 41 (276)
Q Consensus 7 fEVeC~-DG~kRLAhIpGKMRKKVWIk~GDiVLVEp 41 (276)
.+|++. ||.++.|.|||-=.- -.|.+-|.|||.=
T Consensus 73 arV~L~kngk~vtAyIPg~Ghl-n~lqEh~~VLV~G 107 (147)
T 3j20_N 73 VRVQLIKNGKVVTAFCPGDGAI-KFIDEHDEVIIEG 107 (147)
T ss_dssp EEEEETTTCCEEEEECCSSSGG-GTCCTTCEEEEEE
T ss_pred EEEEEccCCcEEEEEcCCchhh-cccccCCEEEEee
Confidence 578995 999999999986431 1488999999986
No 40
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.15 E-value=92 Score=23.98 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=34.3
Q ss_pred CCCceEEEEeCCCCEEEEEecccccceeeeecCCEEEEEeccCC
Q psy2272 2 LGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 45 (276)
Q Consensus 2 LGNgrfEVeC~DG~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQ 45 (276)
++.+++.|...+|.+..+.+.+..-+. -+++|+.|.+...-|.
T Consensus 47 ~d~~~~iVk~s~g~~~~V~v~~~Vd~~-~LkpG~rVaLn~~s~~ 89 (109)
T 2wg5_A 47 LEDGRVVVKSSTGPKFVVNTSQYINEE-ELKPGARVALNQQTLA 89 (109)
T ss_dssp CTTSCEEEEETTSCEEEECBCTTSCTT-TCCTTCEEEEETTTCC
T ss_pred ecCCEEEEEeCCCCEEEEEcccccCHH-HCCCCCEEEECCcceE
Confidence 567789999999999999999988752 3789999988665443
No 41
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.09 E-value=78 Score=28.86 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=36.4
Q ss_pred ecccccc-eeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCCCCccccccccccc
Q psy2272 21 IRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTF 81 (276)
Q Consensus 21 IpGKMRK-KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~GeLPEeFkiNEtdtf 81 (276)
||-|+.| +||| ..|+++|. +|+ +.++.|++-|+.-|.=|-+|++.=...+
T Consensus 145 iptki~~G~I~i-~~d~~v~k-------~G~---~v~~~~A~lL~~l~i~p~~~~l~l~~~~ 195 (339)
T 3j21_k 145 IPARIERGKVTI-QKDTVVLK-------AGE---EITPELANILNALGIQPLEVGLDLLAVY 195 (339)
T ss_dssp CCEEEETTEEEE-CSCEEEEC-------TTS---BCCHHHHHHHHHHTCCCSCCSCEEEEEE
T ss_pred CCeEeccCeEEE-ccceEEEe-------cCC---CcCHHHHHHHHHcCCCcEEeeeeEEEEE
Confidence 4455566 6777 45666653 444 4689999999999999999998865555
No 42
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=20.97 E-value=35 Score=25.97 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=27.8
Q ss_pred CCEEEEEecccccce-----eeeecCCEEEEEeccCCCCeEEEEEecC
Q psy2272 14 GTKRLCHIRGKLRKK-----VWINQGDIILIGLRDYQDAKADVILKYT 56 (276)
Q Consensus 14 G~kRLAhIpGKMRKK-----VWIk~GDiVLVEprDYQD~KGDIIyRYt 56 (276)
+..+..++.|-=... --|..||+|+|.+.. ....|+|+.-..
T Consensus 42 ~~~f~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~~-~~~~Gdivv~~~ 88 (133)
T 2hnf_A 42 DSAFWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQ-AVEPGDFCIARL 88 (133)
T ss_dssp TTCEEEECCSSTTCCC---CCCCCTTCEEEEETTS-CCCTTSEEEEEE
T ss_pred CCEEEEEEeCCCcCCCcCCCCccCCCCEEEEccCC-CCCCCCEEEEEE
Confidence 456667777653331 468899999999864 455687775543
No 43
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=20.95 E-value=1.5e+02 Score=24.60 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=34.0
Q ss_pred EEEEeCCCCEEEEEeccc----ccc---eeeeecCCEEEEEeccCCCCeEEEEEecCHhHHHHHHHcCC
Q psy2272 7 LEAMCFDGTKRLCHIRGK----LRK---KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGE 68 (276)
Q Consensus 7 fEVeC~DG~kRLAhIpGK----MRK---KVWIk~GDiVLVEprDYQD~KGDIIyRYt~DEIR~LKk~Ge 68 (276)
+-++..+|.+.|.|| |- |+- .+++++||.| ++|+.+.++..+.+ ++.|+
T Consensus 70 igi~t~~G~evLiHi-GidTV~l~G~gF~~~V~~Gd~V---------~~G~~L~~~d~~~i---~~~g~ 125 (161)
T 1f3z_A 70 FSIESDSGVELFVHF-GIDTVELKGEGFKRIAEEGQRV---------KVGDTVIEFDLPLL---EEKAK 125 (161)
T ss_dssp EEEEETTSCEEEEEC-SBSGGGGTTTTEEECSCTTCEE---------CTTCEEEEECHHHH---HHHCS
T ss_pred EEEEeCCCCEEEEEE-CccchhcCCCccEEEEeCcCEE---------CCCCEEEEECHHHH---HhcCC
Confidence 445677999999998 62 221 5678888877 47888888866554 55664
No 44
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=20.62 E-value=54 Score=24.18 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCEEEEEecccccceeeeecCCEEEEEeccCCCCeEEEEEe
Q psy2272 14 GTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILK 54 (276)
Q Consensus 14 G~kRLAhIpGKMRKKVWIk~GDiVLVEprDYQD~KGDIIyR 54 (276)
+..+..++.|-=..-.-|..||+|+|.+.. ....|+|+.-
T Consensus 25 ~~~~~~~v~GdSM~p~~i~~Gd~v~vd~~~-~~~~gdivv~ 64 (116)
T 1umu_A 25 SATYFVKASGDSMIDGGISDGDLLIVDSAI-TASHGDIVIA 64 (116)
T ss_dssp GGEEEEECCSSTTGGGTCCTTCEEEEETTS-CCCTTCEEEE
T ss_pred CCEEEEEECCCCcCCCCCCCCCEEEEEcCC-CCCCCCEEEE
Confidence 345666666654332347788998888764 3456776644
No 45
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.01 E-value=69 Score=26.69 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.3
Q ss_pred eeeeecCCEEEEEeccCCCCe-EEEEEecCHh
Q psy2272 28 KVWINQGDIILIGLRDYQDAK-ADVILKYTPD 58 (276)
Q Consensus 28 KVWIk~GDiVLVEprDYQD~K-GDIIyRYt~D 58 (276)
++.|+.||.|.|--=++-... |.|+..+...
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTT
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCC
Confidence 578999999999877776778 9999887553
Done!