RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2272
(276 letters)
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 120 bits (303), Expect = 6e-35
Identities = 74/101 (73%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
Query: 1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEA 60
MLGNGRLEAMCFDG KRLCHIRGKLRKKVWIN DIIL+GLRDYQD KADVILKY DEA
Sbjct: 40 MLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 99
Query: 61 RNLKTYGEFPETVRINDTVTFVEEGYDEDIEFGDEISDDEE 101
R+LK YGE PE +IN+T TF G D++I+F D DDE+
Sbjct: 100 RSLKAYGELPEHAKINETDTF-GPGDDDEIQFDDIGDDDED 139
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 103 bits (259), Expect = 8e-29
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MLGNGRLEAMCFDGTKRLCHIRGKLRKKVWINQGDIILIGLRDYQ-DAKADVILKYTPDE 59
MLG R+ C DG RL I G+L+ ++W+ +GD++++ + Q D K D+I +YT +
Sbjct: 29 MLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQ 88
Query: 60 ARNLKTYGEFPETV 73
LK G E +
Sbjct: 89 VEWLKRKGYLDELL 102
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 69.3 bits (170), Expect = 3e-16
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVILKY 55
L N +G HI GK+RK + I GD + + L Y +K ++ +
Sbjct: 15 TLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRS 70
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 68.1 bits (167), Expect = 1e-15
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 1 MLGNGRLEAMCFDGTKRLCHIRGKLRK-KVWINQGDIILIGLRDYQDAKADVI 52
L N G + L +I GK+R + I GD +++ + Y + ++
Sbjct: 16 ALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 79
Score = 25.9 bits (57), Expect = 1.4
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 71 ETVRINDTVTFVEEGYDEDIEFGDEISDDEEGNAVDNLYLQMHMSKFPWFSIHFKLSFLK 130
E + + V + E + ++ E N + K S K
Sbjct: 4 EVIGLGSVVELEDPLSGERLSV--QVVSPAEAN------VLDTPMKISDASPMGKALLGH 55
Query: 131 KVGTVSSIQEARPSYTLQYQ 150
+VG V S+ P +++
Sbjct: 56 RVGDVLSLD--TPKGKREFR 73
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 27.6 bits (61), Expect = 1.9
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 27 KKVWINQGDIILIGLRDYQDAKADVILKY-TPDEARNLK 64
K WI++ +++ L + A AD+I Y + A+ L+
Sbjct: 281 AKGWIDEDRVMMESLLCMKRAGADIIFTYYAKEAAKKLR 319
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 67
Score = 25.4 bits (56), Expect = 2.0
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 13 DGTKRLCHIRGKLRKK 28
C RG RK
Sbjct: 23 SDKVIQCRGRGIFRKN 38
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 167
Score = 26.3 bits (57), Expect = 3.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 192 NCQGLIVPKEDRIG 205
NC G+I +E +IG
Sbjct: 1 NCPGIISAEETKIG 14
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 26.5 bits (58), Expect = 3.9
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 27 KKVWINQGDIILIGLRDYQDAKADVILKY-TPDEARNLK 64
+ + +L + ++ A AD+I+ Y TP + LK
Sbjct: 280 QAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLK 318
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 26.1 bits (57), Expect = 5.1
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 27 KKVWINQGDIILIGLRDYQDAKADVILKY-TPDEARNLK 64
+K ++ I + + A A +I+ Y P+ L
Sbjct: 301 EKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLD 339
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 25.7 bits (56), Expect = 5.4
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 39 IGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINDTVTFVEEGYDEDI 90
+G +++ A + +N F TV I D VT D
Sbjct: 107 LGSKEFSPAMVKSVYDNMSGAKKN-----HF--TVGIEDDVTGTSLPVDNAF 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.405
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,064,029
Number of extensions: 50205
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 13
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)