RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2273
(434 letters)
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 125 bits (317), Expect = 3e-31
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 156 ERYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRPHHMSSLSNMPLLKTAEDGESRVD 215
E + +T FE AR +FPC D P +KA F++ + ++SNMP + E E +V
Sbjct: 92 ENGMITTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI-EVSERKVV 150
Query: 216 HFQESMPMSPYLLCFTVGSFESLTLWDNSIQYKVYAPRNDSTSW 259
FQ++ MS YLL +G F I + + ++ + +
Sbjct: 151 EFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDIRSKY 194
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 119 bits (300), Expect = 4e-29
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 156 ERYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRPHHMSSLSNMPLLKTAEDGESRV- 214
R +AST FEP AR FPCFDEP FKA FS+ IRR ++SNMPL+K+ E +
Sbjct: 129 LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIE 188
Query: 215 DHFQESMPMSPYLLCFTVGSFESLTLW-DNSIQYKVYAPRN 254
DHF ++ MS YL+ F + FES++ + ++ VYA +
Sbjct: 189 DHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPD 229
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 117 bits (295), Expect = 2e-28
Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 156 ERYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRPHHMSSLSNMPLLKTAEDGESRV- 214
R +A T FEP AR FPCFDEP FKA FS+ IRR +LSNMP +KT E +
Sbjct: 191 TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLE 250
Query: 215 DHFQESMPMSPYLLCFTVGSFESLTLW-DNSIQYKVYAPRN 254
DHF+ ++ MS YL+ + V F SL+ + + ++ +YA +
Sbjct: 251 DHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPD 291
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 99.9 bits (249), Expect = 8e-23
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 156 ERYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRPHHMSSLSNMPLLKT---AEDGES 212
E + + R + PC D P K ++ + P + +L + ED
Sbjct: 133 EHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSR 192
Query: 213 RVDHFQESMPMSPYLLCFTVGSFESLTLWDNSIQYKVYAPR 253
++ F + +P+ YL+ VG+ ES + V++ +
Sbjct: 193 KIYKFIQKVPIPCYLIALVVGALESR---QIGPRTLVWSEK 230
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 98.3 bits (245), Expect = 3e-22
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 156 ERYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRPHHMSSLSNMPLLKTAEDGESRVD 215
E+ + + AR+ P D P + ++ I + ++ + E
Sbjct: 137 EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGTE--RDGDY 194
Query: 216 HFQESMPMSPYLLCFTVGSFESLTLWDNSIQYKVYAPR 253
F + PYL+ VG E + + +YA
Sbjct: 195 FFSMPQAIPPYLIAIGVGDLEFKAMSHQT---GIYAES 229
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 93.4 bits (232), Expect = 2e-20
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 156 ERYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRPHHMSSLSNMPLLKTAEDGESRVD 215
+ + E AR++FPCFD P K+ F+ I P + S + + T++D + +
Sbjct: 138 GKPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESPLPV-VFSGIRIEDTSKD--TNIY 194
Query: 216 HFQESMPMSPYLLCFTVGSFESLTLWDNSIQYKVYAP 252
F++ +P+ YL+ G S + VY
Sbjct: 195 RFEQKVPIPAYLIGIASGDLSSA---PIGPRSTVYTE 228
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 84.5 bits (209), Expect = 1e-17
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 9/109 (8%)
Query: 157 RYVASTVFEPNLARNVFPCFDEPHFKAYFSLMIRRP--HHMSSLSNMPLLKTAEDGESR- 213
+ + + E R + D P A + + + + LSN + E R
Sbjct: 116 KNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFEIPGGRH 175
Query: 214 VDHFQESMPMSPYLLCFTVGSFESL------TLWDNSIQYKVYAPRNDS 256
F + YL G + L ++ V++
Sbjct: 176 GARFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYV 224
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 77.6 bits (191), Expect = 2e-15
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 158 YVASTVFEPNLARNVFPCFDEPHFKAYFSLMIR--RPHHMSSLSNMPLLKTAEDGESR-V 214
T EP R + D P + F+ I + + LSN + E + R
Sbjct: 110 GNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGEFSDGRHW 169
Query: 215 DHFQESMPMSPYLLCFTVGSFESL-----TLWDNSIQYKVYAPRND 255
+++ YL G T+ +++ + Y D
Sbjct: 170 VKWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEAD 215
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 73.4 bits (180), Expect = 5e-14
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 158 YVASTVFEPNLARNVFPCFDEPHFKAYFSLMIR--RPHHMSSLSNMPLLKTAEDGESR-V 214
T E R++ D P A F+ I + + LSN + E R
Sbjct: 135 DALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHW 194
Query: 215 DHFQESMPMSPYLLCFTVGSFESL-----TLWDNSIQYKVYAPRND 255
+Q+ P YL G F+ L T + ++Y R +
Sbjct: 195 VQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGN 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 5e-09
Identities = 84/486 (17%), Positives = 143/486 (29%), Gaps = 194/486 (39%)
Query: 29 TSTQSITEVNLCCRGSVRFQ---STSIDGVHYVWTQLRPATHYQVDLTGGTYQPYLSGLP 85
ST+ +T + GS+ T+ ++ +QL+ + + LP
Sbjct: 4 YSTRPLTLSH----GSLEHVLLVPTAS---FFIASQLQ--------------EQFNKILP 42
Query: 86 D-SDLLALVLSTHEVQSQSSVE-VGQ--SFVNPNVVPIFDGHSGLPDSDL-LALDVFEK- 139
+ ++ A + + + E VG+ +V+ V P G D L L L FE
Sbjct: 43 EPTEGFA-----ADDEPTTPAELVGKFLGYVSSLVEP---SKVGQFDQVLNLCLTEFENC 94
Query: 140 ---------VAAKFFEHCSKRLWVSERYVASTVFEPNLARNVFPCFDEPHFKAYFS--LM 188
+AAK + L ++ + K Y + +M
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELI----------------------KNYITARIM 132
Query: 189 IRRPHHMSSLSNMPLLKTAEDGESRVDHFQESMPMSPYLLCFTV----GS----FESL-T 239
+RP S S L + +G +++ + G+ FE L
Sbjct: 133 AKRPFDKKSNS--ALFRAVGEGNAQL---------------VAIFGGQGNTDDYFEELRD 175
Query: 240 LWDNSIQYKVYAPRNDSTSWTKNPDGSTWENARNSTSS---WTKNLDRTTW-DNIEKGP- 294
L Y+ Y K + E R + + +T+ L+ W +N P
Sbjct: 176 L------YQTYHVLVG--DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 295 QNYSSSWTNKPAGSWENAIQKSSQNDSSSWTKNPNSIFSDKSQYALVKNLMSV-PGSNKP 353
++Y S P S P + Y + L+ PG +
Sbjct: 228 KDYLLS---IPI-SC------------------PLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 354 --------------------AGSWENAIQKS-------------SQNDSSSWTKNPNSTF 380
SWE+ PN++
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY------PNTSL 319
Query: 381 SDK-SQYALGHNIAEGSWPIPVP-------SNKAV--------KRLPSEKFDERSWTNFA 424
+ +L +N EG +P P + + V LP+ K E S N A
Sbjct: 320 PPSILEDSLENN--EG---VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 425 NN-VVS 429
N VVS
Sbjct: 375 KNLVVS 380
Score = 56.2 bits (135), Expect = 1e-08
Identities = 59/319 (18%), Positives = 91/319 (28%), Gaps = 110/319 (34%)
Query: 45 VRFQSTSIDGVHYVWTQLRPAT-HYQVDLTGGTYQPYLS--GLPDSDLLALVLST-HEVQ 100
VR Y T L P+ ++ G P LS L + V T +
Sbjct: 308 VRCYEA------YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 101 SQSSVEVGQSFVN-PN--VVPIFDGHSGLPDSDLLALDV-FEKVAAKFFEHCSKRLWVSE 156
+ VE+ S VN VV SG P S L L++ K A
Sbjct: 362 AGKQVEI--SLVNGAKNLVV------SGPPQS-LYGLNLTLRKAKA-------------- 398
Query: 157 RYVASTVFEPNLARNVFPCFDE--PHFKAYFSLMIRRPHHMSSLSNMPLLKTAEDGESRV 214
L ++ P F E F F L + P H S LL A
Sbjct: 399 --------PSGLDQSRIP-FSERKLKFSNRF-LPVASPFH----S--HLLVPA------S 436
Query: 215 DHFQESMPMSPYLLCFTVGSFESLTLWDNSIQYKVYAPRNDSTSWTKNPDGSTWENARNS 274
D + + +++ IQ VY D + R
Sbjct: 437 DLINKDLVK------------NNVSFNAKDIQIPVY-------------DTFDGSDLRVL 471
Query: 275 TSSWTKNL------DRTTWDN---------IEKGPQNYS--SSWTNKPA-GSWENAIQKS 316
+ S ++ + W+ ++ GP S T++ G+ I
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Query: 317 SQNDSSSWTKNPNSIFSDK 335
+ + NP+ + K
Sbjct: 532 TLD------INPDDDYGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 43/326 (13%), Positives = 82/326 (25%), Gaps = 121/326 (37%)
Query: 24 EEC--PHTSTQS-ITEVNLCCRGSVRFQSTSIDGVHYVWT------QLRPATHYQVDLTG 74
E P T+ I + + + F ++ + +LRPA + +D
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 75 GTYQPYLSGLPDSDLLALVLSTHEVQSQSS-----VEVGQSF---------------VNP 114
G SG + + V +++VQ + + + ++P
Sbjct: 160 G------SG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 115 NVVPIFDGHSGLPDS-------------------DLLALD-VFEKVAAKFFE-HCSKRLW 153
N D S + LL L V A F C ++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KIL 269
Query: 154 VSERYVASTVFEPNLARNVFPC------FDEPHFKAYFSLMIRR-----PHHMSSLSNMP 202
++ R+ T F K+ + P + + + P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--P 327
Query: 203 LL-----KTAEDGESRVDH----------------------------------FQESMPM 223
++ DG + D+ F S +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 224 SPYLLCFTVGSFESLTLWDNSIQYKV 249
LL +W + I+ V
Sbjct: 388 PTILLS---------LIWFDVIKSDV 404
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.65
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 9/28 (32%)
Query: 236 ESLTLWDNSIQYKVYAPRNDSTSWTKNP 263
++L S+ K+YA DS P
Sbjct: 20 QALKKLQASL--KLYAD--DSA-----P 38
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 30.0 bits (66), Expect = 2.1
Identities = 6/49 (12%), Positives = 17/49 (34%)
Query: 241 WDNSIQYKVYAPRNDSTSWTKNPDGSTWENARNSTSSWTKNLDRTTWDN 289
+ K+ ++ +T +G + N +++T N +
Sbjct: 354 INGHYYLKLKKNGDNDFRYTVRENGVVYNETTNKPTNYTINDKYEVLEG 402
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA
cleavage, proofreading, BACKTRACKING, gene expression,
multiprotein complex; 3.80A {Saccharomyces cerevisiae}
SCOP: i.8.1.1 PDB: 1eo0_A
Length = 309
Score = 28.6 bits (62), Expect = 4.0
Identities = 12/122 (9%), Positives = 32/122 (26%), Gaps = 1/122 (0%)
Query: 257 TSWTKNPDGSTWENARNSTSSWTKNLDRTTWDNIEKGPQNYS-SSWTNKPAGSWENAIQK 315
+ K+ + + + SSW +++ + E+
Sbjct: 51 NKFKKSTNVEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGV 110
Query: 316 SSQNDSSSWTKNPNSIFSDKSQYALVKNLMSVPGSNKPAGSWENAIQKSSQNDSSSWTKN 375
S S + S K + + + + +K A+ +S ++
Sbjct: 111 QQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQS 170
Query: 376 PN 377
Sbjct: 171 IL 172
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA
integration, DNA recombination, structural genomics,
protein structure initiative; NMR {Escherichia coli
k-12}
Length = 118
Score = 27.0 bits (60), Expect = 5.3
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 137 FEKVAAKFFEHCSKRLWVSERYVASTVFEPNLARNVFPCF 176
F + +++EH + S Y A+ + + ++ P
Sbjct: 7 FSAIYKEWYEHKKQV--WSVGY-ATELAK-MFDDDILPII 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.385
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,369,783
Number of extensions: 348762
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 27
Length of query: 434
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 338
Effective length of database: 4,021,377
Effective search space: 1359225426
Effective search space used: 1359225426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.7 bits)