Query psy2274
Match_columns 244
No_of_seqs 174 out of 392
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 20:31:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00195 60S ribosomal protein 100.0 6.6E-53 1.4E-57 367.2 13.2 131 35-165 1-139 (198)
2 PTZ00469 60S ribosomal subunit 100.0 4.4E-52 9.6E-57 359.7 13.1 129 35-165 1-131 (187)
3 KOG1714|consensus 100.0 1.4E-45 2.9E-50 317.7 12.2 131 35-165 1-132 (188)
4 COG1727 RPL18A Ribosomal prote 100.0 2E-42 4.3E-47 282.7 11.9 112 48-165 2-114 (122)
5 PRK04005 50S ribosomal protein 99.9 1E-26 2.3E-31 187.6 10.1 102 58-165 1-103 (111)
6 KOG1714|consensus 99.5 1.7E-15 3.8E-20 131.6 0.5 58 166-223 29-91 (188)
7 PF00828 Ribosomal_L18e: Ribos 99.4 5.1E-13 1.1E-17 107.6 8.0 105 45-157 11-129 (129)
8 PTZ00195 60S ribosomal protein 99.3 1.3E-13 2.7E-18 121.4 0.2 58 166-223 30-98 (198)
9 PTZ00469 60S ribosomal subunit 99.2 5.1E-12 1.1E-16 110.5 0.3 57 166-224 30-91 (187)
10 PRK05592 rplO 50S ribosomal pr 98.6 1.4E-08 3.1E-13 85.2 0.9 61 88-155 70-144 (146)
11 PRK06419 rpl15p 50S ribosomal 98.5 1.1E-07 2.4E-12 80.0 5.0 68 90-159 68-147 (148)
12 TIGR01071 rplO_bact ribosomal 98.3 5.2E-07 1.1E-11 75.3 4.7 60 89-154 71-144 (145)
13 PTZ00160 60S ribosomal protein 98.0 9.5E-06 2.1E-10 68.9 5.0 63 93-156 71-145 (147)
14 COG1727 RPL18A Ribosomal prote 97.8 5.6E-06 1.2E-10 68.8 0.3 54 166-222 17-74 (122)
15 COG0200 RplO Ribosomal protein 97.6 4.7E-05 1E-09 65.0 3.0 66 91-157 76-151 (152)
16 PRK04005 50S ribosomal protein 96.2 0.00096 2.1E-08 54.5 -0.5 38 166-203 6-47 (111)
17 KOG1742|consensus 89.3 0.68 1.5E-05 40.0 4.8 65 91-155 67-144 (147)
18 KOG0846|consensus 83.4 1 2.2E-05 42.2 3.0 67 88-156 89-174 (274)
19 TIGR01170 rplA_mito ribosomal 36.5 21 0.00045 30.2 1.5 81 131-227 52-136 (141)
20 KOG0829|consensus 31.7 28 0.0006 30.9 1.5 29 142-170 42-72 (169)
21 COG5515 Uncharacterized conser 27.0 62 0.0013 24.9 2.5 25 165-189 2-26 (70)
22 PF09184 PPP4R2: PPP4R2; Inte 22.8 2.5E+02 0.0053 26.4 6.1 54 64-125 85-139 (288)
No 1
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=100.00 E-value=6.6e-53 Score=367.15 Aligned_cols=131 Identities=33% Similarity=0.559 Sum_probs=127.6
Q ss_pred ceeecc-CcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhc------CC
Q psy2274 35 NGVDIC-HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMK------KP 107 (244)
Q Consensus 35 MGiD~~-~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k------~~ 107 (244)
|||||+ ++++++++|+.|+|+||||++||++|+|+||+|+|+||++||+||+||++||||||||||++||+ ++
T Consensus 1 mgid~~~~~~~~~~~r~~pkstN~yL~lLVklyrflaRrt~a~fnk~VakRL~~sr~nRppVsLSrI~r~~k~~d~~~~~ 80 (198)
T PTZ00195 1 MGVDLTGISKKSRVVRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAK 80 (198)
T ss_pred CceecccccccccccccCCCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcccccCCceeHHHHHHHHhcccccccc
Confidence 999998 67899999999999999999999999999999999999999999999999999999999999997 36
Q ss_pred CCCCCEEEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 108 TREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 108 ~~egkivVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
+++|+|||||||||||++|.+||||+||||+||++|++||++|||+|+|||||++ +|+
T Consensus 81 ~~~~k~~VVvGkVtdd~rl~~vPkvtVaALrfS~tAr~rI~kAGGe~lT~dQLa~~~Pk 139 (198)
T PTZ00195 81 GKKAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPT 139 (198)
T ss_pred CCCCcEEEEEeeEcCCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCC
Confidence 7899999999999999999999999999999999999999999999999999998 998
No 2
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=100.00 E-value=4.4e-52 Score=359.72 Aligned_cols=129 Identities=40% Similarity=0.567 Sum_probs=126.3
Q ss_pred ceeecc-CcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCE
Q psy2274 35 NGVDIC-HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRV 113 (244)
Q Consensus 35 MGiD~~-~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egki 113 (244)
|||||+ |++++|++|+.|+|+||||++||++|+|+||+|+|+||++||+||+||++||||||||||++||+ ++||||
T Consensus 1 mgid~~~~~~~~k~~r~~~~stN~yL~~Lik~yk~larrt~a~fwk~Va~RL~~srrnr~pVnLSkI~r~~~--~ke~~~ 78 (187)
T PTZ00469 1 MGIALKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMA--SYPDDV 78 (187)
T ss_pred CceecccCccccCCCccCCCCCCHHHHHHHHHHHHHHHhhCChHHHHHHHHHhcccccCCceeHHHHHHHhc--cCCCCE
Confidence 999998 77999999999999999999999999999999999999999999999999999999999999995 679999
Q ss_pred EEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 114 AVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 114 vVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
|||||||||||+|.+||||+||||+||++|++||++|||+|+|||||++ ||+
T Consensus 79 ~VVvGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~dqLa~~~P~ 131 (187)
T PTZ00469 79 AVVVGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLTFDQLALKYPT 131 (187)
T ss_pred EEEEeeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999998 998
No 3
>KOG1714|consensus
Probab=100.00 E-value=1.4e-45 Score=317.73 Aligned_cols=131 Identities=51% Similarity=0.819 Sum_probs=129.7
Q ss_pred ceeeccCcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEE
Q psy2274 35 NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVA 114 (244)
Q Consensus 35 MGiD~~~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkiv 114 (244)
|||||.|++++++.|++|+|+|+||++|+++|+|++|+|++.||++|++|||||++||||+|||+|+++|+.+++|+||+
T Consensus 1 mg~di~~~~~~k~~RtePkS~dvYLrllvkly~flarrT~s~fn~vvLKrLfmSk~nrpPlsls~iir~~k~~~~enKta 80 (188)
T KOG1714|consen 1 MGIDILHNKSRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSKTNRPPLSLSRIIRKMKLPGQENKTA 80 (188)
T ss_pred CCccccCCccccccccCCCCccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhcccCCCcCHHHHHHHhhccCccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 115 VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 115 VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
|||||||||.++.+|||++||||+||++|+++|+++||+|+|+|||+. -|+
T Consensus 81 VVVgTvtdD~rv~~vPkl~v~al~~t~~ar~rI~kagg~i~TlDQLal~sP~ 132 (188)
T KOG1714|consen 81 VVVGTVTDDLRVQEVPKLKVAALRFTKGARARILKAGGEILTLDQLALDSPK 132 (188)
T ss_pred EEEeeecccceeeecccceeeeeecccchhhhhhccCceEEeeHHhcccCCC
Confidence 999999999999999999999999999999999999999999999998 888
No 4
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-42 Score=282.66 Aligned_cols=112 Identities=27% Similarity=0.379 Sum_probs=108.9
Q ss_pred cccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCccc
Q psy2274 48 RRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMW 127 (244)
Q Consensus 48 ~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~ 127 (244)
.++.|+|+|+||+.||++|+++||+++++||++||+||++|||+|+|||||||++|++ |||++||||||||||.+.
T Consensus 2 ~~~~t~~tN~~L~~Li~~l~~~ar~~~a~iwk~vaerL~~prr~ra~VnlsKI~r~ak----~~d~vvVpGkVLg~g~l~ 77 (122)
T COG1727 2 SMKKTGSTNVYLRKLIRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRYAK----EGDTVVVPGKVLGDGKLD 77 (122)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhcccccCCceeHHHHHhhcC----CCCEEEEeeeEecCcccc
Confidence 3678999999999999999999999999999999999999999999999999999999 999999999999999777
Q ss_pred ccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 128 TIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 128 eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
||++|+||+||++|++||+.|||+|+|++||++ ||+
T Consensus 78 --~kVtVaAl~FS~~A~~KI~~aGGe~~tl~el~e~nPk 114 (122)
T COG1727 78 --KKVTVAALRFSKTAREKIEEAGGECLTLEELAERNPK 114 (122)
T ss_pred --cceEEEEEecCHHHHHHHHHcCCeEeeHHHHHHHCCC
Confidence 799999999999999999999999999999999 998
No 5
>PRK04005 50S ribosomal protein L18e; Provisional
Probab=99.94 E-value=1e-26 Score=187.59 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCceeEEEe
Q psy2274 58 YLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRF 137 (244)
Q Consensus 58 yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKltV~AL 137 (244)
+++.|+++|+++||++++|||++|++||+||++.+++|||++|++++. +|+++++|+||||+|++. ++++|.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~~r~~y~vVNL~~L~~~~~----~~~vv~~~~KVLg~G~l~--k~l~V~a~ 74 (111)
T PRK04005 1 RLRKLIRDLKKASRENGAPIWKDVAERLEKPRRRRAEVNLSKINRYAK----EGDTVVVPGKVLGSGKLD--HKVTVAAL 74 (111)
T ss_pred CHHHHHHHHHHHHhhhCCcHHHHHHHHHhCCCCccceEEHHHHHhhcc----CCCEEEEeeEEEcCceEc--CCEEEEEe
Confidence 578999999999999999999999999999999999999999999886 678999999999999998 59999999
Q ss_pred eeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 138 MKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 138 ~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
.||++|+++|+++||++..++||++ ||+
T Consensus 75 ~~Sk~A~ekIe~aGG~v~~~~~l~~~~p~ 103 (111)
T PRK04005 75 SFSETAKEKIEEAGGKALTIEELVEENPK 103 (111)
T ss_pred ecCHHHHHHHHHcCCEEEEHHHHHHHCCC
Confidence 9999999999999999999999998 998
No 6
>KOG1714|consensus
Probab=99.52 E-value=1.7e-15 Score=131.57 Aligned_cols=58 Identities=50% Similarity=0.685 Sum_probs=51.5
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-CCCcccccccccccccchh
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-PTNTLALLPVFPTVTRKLT 223 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~~~~~~~~~v~~tvt~~~~ 223 (244)
.+||+||+|||+|.||++|||||||||+|| +|+++..|+ |...-.+-||+||||||+.
T Consensus 29 vkly~flarrT~s~fn~vvLKrLfmSk~nrpPlsls~iir~~k~~~~enKtaVVVgTvtdD~r 91 (188)
T KOG1714|consen 29 VKLYRFLARRTNSTFNQVVLKRLFMSKTNRPPLSLSRIIRKMKLPGQENKTAVVVGTVTDDLR 91 (188)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhcccCCCcCHHHHHHHhhccCccCceEEEEeeecccce
Confidence 699999999999999999999999999999 999999998 4333346699999999984
No 7
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
Probab=99.42 E-value=5.1e-13 Score=107.61 Aligned_cols=105 Identities=22% Similarity=0.319 Sum_probs=85.2
Q ss_pred ccccccC---CCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCC--C---CCCCEEEE
Q psy2274 45 RRVRRTK---PKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKP--T---REGRVAVI 116 (244)
Q Consensus 45 kk~~Rk~---~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~--~---~egkivVV 116 (244)
.|..+.+ .+..+.+..-...+|+++.++ .|+.... .+++.++++|||++|.+++..- . .+++++++
T Consensus 11 ~kG~~~rsG~~~~~~~feggq~pl~rr~pK~---Gf~~~~~---~~~~~~~~~vnL~~L~~~i~~~~~~~~~~~~~~~~~ 84 (129)
T PF00828_consen 11 HKGGRGRSGGHKHRPGFEGGQMPLYRRLPKR---GFNNPHL---RKNRREYPPVNLSKLQELIEKLKIDGTEIDGKILVD 84 (129)
T ss_dssp SSSSSSSTTTSSTSSHHHHHHSHHHHHSSSS---SHHHCCH---CSGTCCCEEEEHHHHHHHTTTSSSSSCECTTSEEEE
T ss_pred CCCCCCCCCCCCCCchhcccccccccccCcc---ccccccc---ccCcceeEeeeHHHHHHHHHhccccccccCCceeee
Confidence 3444444 467788999999999999876 4554332 7788999999999999987631 1 26799999
Q ss_pred Ee------eeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274 117 VG------TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD 157 (244)
Q Consensus 117 vG------KVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti 157 (244)
+| |||++|.+. .+|+|+|..||++|+++|++|||+|++|
T Consensus 85 ~~~~~~~~KvLg~G~l~--~~l~I~a~~~S~~A~ekIe~aGG~v~~~ 129 (129)
T PF00828_consen 85 AGLIKGYVKVLGKGELT--KPLTIKAHRFSKSAKEKIEAAGGEVVTF 129 (129)
T ss_dssp CCEESSEEEEESSSSSS--SSEEEEESEETHHHHHHHHHTSEEEEEH
T ss_pred ccccccceeeeccCCcc--cceEEEEEecCHHHHHHHHHcCCEEEeC
Confidence 99 889999985 3599999999999999999999999986
No 8
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=99.35 E-value=1.3e-13 Score=121.36 Aligned_cols=58 Identities=31% Similarity=0.508 Sum_probs=51.8
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-------CCCcccccccccccccchh
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-------PTNTLALLPVFPTVTRKLT 223 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-------~~~~~~~~~v~~tvt~~~~ 223 (244)
+++|+||+|||+++||++|++|||||++|| +|+++..|+ +..+-.+.||+||||+|--
T Consensus 30 VklyrflaRrt~a~fnk~VakRL~~sr~nRppVsLSrI~r~~k~~d~~~~~~~~~k~~VVvGkVtdd~r 98 (198)
T PTZ00195 30 IKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKGKKAPIAVVVGDVLDDVR 98 (198)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHhcccccCCceeHHHHHHHHhccccccccCCCCcEEEEEeeEcCCcc
Confidence 799999999999999999999999999999 999999996 3334447899999999964
No 9
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=99.16 E-value=5.1e-12 Score=110.53 Aligned_cols=57 Identities=39% Similarity=0.528 Sum_probs=51.6
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-CCCcccccccccccccchhh
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-PTNTLALLPVFPTVTRKLTS 224 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~~~~~~~~~v~~tvt~~~~~ 224 (244)
+++|+||+|+|+++||+.|++||+||++|| +|+++..|+ .+|+ +.||+||||+|-.-
T Consensus 30 ik~yk~larrt~a~fwk~Va~RL~~srrnr~pVnLSkI~r~~~~ke~~--~~VVvGkVl~dgrl 91 (187)
T PTZ00469 30 VKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMASYPDD--VAVVVGSITDDKRL 91 (187)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHhcccccCCceeHHHHHHHhccCCCC--EEEEEeeEccCccc
Confidence 799999999999999999999999999999 999999994 5665 45999999999653
No 10
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Probab=98.58 E-value=1.4e-08 Score=85.16 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=52.6
Q ss_pred cccCCCcccHHHHHHHhcCCCCCCCEE---------EE-----EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcE
Q psy2274 88 SKINRPPMAISKIVRFMKKPTREGRVA---------VI-----VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGT 153 (244)
Q Consensus 88 srrnR~pVnLSKI~R~~k~~~~egkiv---------VV-----vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGk 153 (244)
.+..+.+|||++|+++ . ++++| +| +.|||++|.|. .+++|.|..||++|+++|++|||+
T Consensus 70 ~~~~y~~VNL~~L~~~-~----~~~~I~~~~L~~~gli~~~~~~vKvLg~G~l~--~~i~I~a~~~S~sA~e~IE~aGG~ 142 (146)
T PRK05592 70 FRKEYAVVNLGDLNKF-E----EGTEVTLEALKAAGLIRKNIKGVKVLGNGELT--KKLTVKAHKFSKSAKEAIEAAGGK 142 (146)
T ss_pred CcceEEEEeHHHhhcc-C----CCCeECHHHHHHCCcccCCCcceEEEecCccc--cCEEEEEEccCHHHHHHHHHcCCE
Confidence 3678899999999973 2 45566 66 89999999987 489999999999999999999999
Q ss_pred Ee
Q psy2274 154 IV 155 (244)
Q Consensus 154 i~ 155 (244)
|.
T Consensus 143 v~ 144 (146)
T PRK05592 143 VE 144 (146)
T ss_pred EE
Confidence 85
No 11
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
Probab=98.53 E-value=1.1e-07 Score=80.02 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=54.2
Q ss_pred cCCCcccHHHHHHHhc----C--CCCCCCEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274 90 INRPPMAISKIVRFMK----K--PTREGRVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD 157 (244)
Q Consensus 90 rnR~pVnLSKI~R~~k----~--~~~egkivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti 157 (244)
...++|||++|..+.. . -..+++..|| +.|||+.|.|.. +++|-|-.||++|+++|+.|||+|+..
T Consensus 68 ~~~~~INL~~L~~l~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~~--pl~Vka~~fS~~A~ekIe~aGG~v~l~ 145 (148)
T PRK06419 68 KEVSTINVGELDELADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVTR--PLVIKADAFSEKAIEKIEAAGGEVVLS 145 (148)
T ss_pred ceeeeEEHHHHHHhHHHHHHCCcccccCCcceeeeccCCceEEeCCCccCc--CEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence 4569999999998761 0 1124445555 579999999874 899999999999999999999999876
Q ss_pred hh
Q psy2274 158 PR 159 (244)
Q Consensus 158 dr 159 (244)
++
T Consensus 146 ~~ 147 (148)
T PRK06419 146 EE 147 (148)
T ss_pred ec
Confidence 64
No 12
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle.
Probab=98.35 E-value=5.2e-07 Score=75.29 Aligned_cols=60 Identities=13% Similarity=0.296 Sum_probs=49.9
Q ss_pred ccCCCcccHHHHHHHhcCCCCCCCEE---------EEE-----eeeecCCcccccCceeEEEeeeccchhhhhhhcCcEE
Q psy2274 89 KINRPPMAISKIVRFMKKPTREGRVA---------VIV-----GTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTI 154 (244)
Q Consensus 89 rrnR~pVnLSKI~R~~k~~~~egkiv---------VVv-----GKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki 154 (244)
+....+|||++|+++.. ++..+ ||. -|||++|.+.. +++|.|..||++|+++|+.|||+|
T Consensus 71 ~~~~~~VNL~~L~~~~~----~g~~i~~~~L~~~gli~~~~~~vKvLg~G~l~~--~l~I~a~~~S~sA~ekIE~aGG~v 144 (145)
T TIGR01071 71 KKEYAEVNLGKLAKLFP----NGEVVTLETLKEKGLITKKIKFVKVLGNGKLTK--PLTVKAHRVSKSAKAAIEAAGGSV 144 (145)
T ss_pred CcceeEEEHHHHhhhhh----cCCEecHHHHhhCccCcCCCCceEEeCCCCcCc--CEEEEEEEECHHHHHHHHHcCCEE
Confidence 46778999999998865 33333 343 58999999874 899999999999999999999998
No 13
>PTZ00160 60S ribosomal protein L27a; Provisional
Probab=97.98 E-value=9.5e-06 Score=68.86 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=47.4
Q ss_pred CcccHHHHHHHhcC------CCCCCCEEEEE------eeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274 93 PPMAISKIVRFMKK------PTREGRVAVIV------GTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD 156 (244)
Q Consensus 93 ~pVnLSKI~R~~k~------~~~egkivVVv------GKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T 156 (244)
++|||.+|...... ...+++..||- -|||++|.|.. .+++|.|..||++|+++|+.+||+|+-
T Consensus 71 ~~INl~~L~~lv~~~~~~~~a~~~~~~~vIDl~~~g~~KVLG~G~l~~-~~v~Vka~~~Sk~A~ekIe~aGG~v~l 145 (147)
T PTZ00160 71 PTINVDKLWSLVPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLPK-QPVIVKARYFSKKAEKKIKAVGGACVL 145 (147)
T ss_pred ceeEHHHHHHHhHHHHHHhhhhccCCceEEEeeccCceEEecCCeEcC-ccEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 77788888665321 01244545542 58999999843 489999999999999999999999964
No 14
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=5.6e-06 Score=68.76 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=47.8
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCCcccccccccccccch
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTNTLALLPVFPTVTRKL 222 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~~~~~~~v~~tvt~~~ 222 (244)
+..|+++||+++++|++.|++||+++|.|| ||.+....++.|. .||.|+|++|-
T Consensus 17 i~~l~~~ar~~~a~iwk~vaerL~~prr~ra~VnlsKI~r~ak~~d~---vvVpGkVLg~g 74 (122)
T COG1727 17 IRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRYAKEGDT---VVVPGKVLGDG 74 (122)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcccccCCceeHHHHHhhcCCCCE---EEEeeeEecCc
Confidence 678999999999999999999999999999 8988888775554 68889999874
No 15
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=4.7e-05 Score=65.03 Aligned_cols=66 Identities=5% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCCcccHHHHHHHhcCCC-------CCCCEEEE---EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274 91 NRPPMAISKIVRFMKKPT-------REGRVAVI---VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD 157 (244)
Q Consensus 91 nR~pVnLSKI~R~~k~~~-------~egkivVV---vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti 157 (244)
.+++||+.+|+....... .+.++|+. .-|||++|+|..-..+.|.| .||++|+++|+.|||++.-+
T Consensus 76 ~~~~vn~~~l~~~~~~~~~v~~~~l~~~~~i~~~~~~vKvLg~G~l~~~~~~~v~a-~~S~~A~ekIe~aGG~v~~~ 151 (152)
T COG0200 76 EYAVVNLGKLAELLPEGEEVTLASLKAAGVIRKLKDLVKVLGNGKLTKAVPVKVKA-KASKSAIEKIEAAGGKVELI 151 (152)
T ss_pred ceeEEEHHHhhhhccccccccHHHHhhCCeEeccccccEEeccCeeccceeEEEEe-eeCHHHHHHHHHcCCEEEec
Confidence 568999999998884211 12334322 37999999999544688888 99999999999999998754
No 16
>PRK04005 50S ribosomal protein L18e; Provisional
Probab=96.23 E-value=0.00096 Score=54.53 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=34.3
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhc
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDV 203 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~ 203 (244)
+++|++.+|+++++|++.|.+||+||+.+. +++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~v~~rl~~~r~~y~vVNL~~L~~~~ 47 (111)
T PRK04005 6 IRDLKKASRENGAPIWKDVAERLEKPRRRRAEVNLSKINRYA 47 (111)
T ss_pred HHHHHHHHhhhCCcHHHHHHHHHhCCCCccceEEHHHHHhhc
Confidence 468999999999999999999999999988 88888544
No 17
>KOG1742|consensus
Probab=89.34 E-value=0.68 Score=39.96 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHhcC-------CCCCCCE--E----EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEe
Q psy2274 91 NRPPMAISKIVRFMKK-------PTREGRV--A----VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155 (244)
Q Consensus 91 nR~pVnLSKI~R~~k~-------~~~egki--v----VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~ 155 (244)
-.|+|||.++-.+.-. ..+.|.. | .=.++|+|-|.|.+--.+-|.|=-||..|.++|.++||.+.
T Consensus 67 ~~P~vnldkLWtlv~~~~~~~~~~~k~g~aPvidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~~ 144 (147)
T KOG1742|consen 67 FCPTVNLDKLWTLVREQTRVKAAKNKTGAAPVIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAVV 144 (147)
T ss_pred cCCcccHHHHHHhhhHHHHHHHhccCCCCCceeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhcCceee
Confidence 4677777777554410 0122222 1 23578999999984457899999999999999999999885
No 18
>KOG0846|consensus
Probab=83.44 E-value=1 Score=42.18 Aligned_cols=67 Identities=9% Similarity=0.140 Sum_probs=46.2
Q ss_pred cccCCCcccHHHHHHHhcCCCC--CCCEE----------EEEee------eecCCcccccC-ceeEEEeeeccchhhhhh
Q psy2274 88 SKINRPPMAISKIVRFMKKPTR--EGRVA----------VIVGT------IVDDPRMWTIP-KLTIVRFMKKPTREGRVA 148 (244)
Q Consensus 88 srrnR~pVnLSKI~R~~k~~~~--egkiv----------VVvGK------VldDgrL~eVP-KltV~AL~fS~sAr~KI~ 148 (244)
-++...|+||.+|.+.... ++ +.+.| ++|+. +++||- .+++ ++.+-+=++|+.|.+.|+
T Consensus 89 ~~r~~~pl~L~rlq~lID~-grid~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~-d~~~~~i~iEvs~aS~~AiaaIE 166 (274)
T KOG0846|consen 89 GRRQYLPLSLGRLQKLIDT-GRIDPSQPIDMKTLKDSGLINPKGREYGVQLTADGA-DEFKAKINIEVSRASVQAIAAIE 166 (274)
T ss_pred ccccCCcccHHHHHHHHHh-cCCCccCceeHHHHHhccCCCccccccCceeeccCC-ccccceEEEEehhhhHHHHHHHH
Confidence 4678889999999888763 11 11111 23332 334443 2344 899999999999999999
Q ss_pred hcCcEEee
Q psy2274 149 VIVGTIVD 156 (244)
Q Consensus 149 kAGGki~T 156 (244)
++||.|++
T Consensus 167 kaGG~vtt 174 (274)
T KOG0846|consen 167 KAGGSVTT 174 (274)
T ss_pred hcCCeEEE
Confidence 99999976
No 19
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=36.48 E-value=21 Score=30.18 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=51.8
Q ss_pred ceeEEEeeeccchhhhhhhcCcEEeehhhhhc---CCCcce-EEeeecccCchhHHHHHHHHhhhhhhhhhhhhhhcCCC
Q psy2274 131 KLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT---IPKLTL-YRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPT 206 (244)
Q Consensus 131 KltV~AL~fS~sAr~KI~kAGGki~TidrL~e---NPK~~l-y~fl~rrt~s~fnk~i~~rl~~sk~nr~s~~~~~~~~~ 206 (244)
.++||++.=.+.+.+.-..+|-.++..++|++ +-++.+ ..|||. ==.|.. |+.|....-|.
T Consensus 52 ~~kV~Vf~~~~~~~~~Ak~aGa~~vg~edLi~~i~~g~~~~fd~~iA~------------~~~m~~---l~~Lg~iLGpr 116 (141)
T TIGR01170 52 EPKIAVFTKGASEVEEAREAGADYVGGDDLIKKIEDGEIKPFDYLIAH------------PDIVPE---LAQLRRLLGPK 116 (141)
T ss_pred CCEEEEECCChHHHHHHHHcCCCEeCHHHHHHHHhcCCcccccEEEEC------------HHHHHH---HHHhhcccccC
Confidence 58999987666655556788999999999976 334553 444442 112322 34555566665
Q ss_pred Ccccccccccccccchhhhhh
Q psy2274 207 NTLALLPVFPTVTRKLTSDLK 227 (244)
Q Consensus 207 ~~~~~~~v~~tvt~~~~~~~~ 227 (244)
.+... +..||||+|+.+-++
T Consensus 117 GlMP~-~k~gTv~~di~~~I~ 136 (141)
T TIGR01170 117 GLMPS-PKRGTVGDNLLSMIE 136 (141)
T ss_pred cCCCC-CCCCCcccCHHHHHH
Confidence 54332 456999999987554
No 20
>KOG0829|consensus
Probab=31.67 E-value=28 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.0
Q ss_pred chhhhhhhcCcEEeehhhhhc-CCC-cceEE
Q psy2274 142 TREGRVAVIVGTIVDDPRMWT-IPK-LTLYR 170 (244)
Q Consensus 142 sAr~KI~kAGGki~TidrL~e-NPK-~~ly~ 170 (244)
+-..|+.++.|+++++.|++| +|. ++-|-
T Consensus 42 ~~l~KvKks~Geiv~i~qi~E~~p~~vkNfG 72 (169)
T KOG0829|consen 42 SKLKKVKKSSGEIVAINQIFEKSPLKVKNFG 72 (169)
T ss_pred HHHHHHhhcCceEEEeceecCCCCceeeeeE
Confidence 346789999999999999999 997 55553
No 21
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=26.96 E-value=62 Score=24.91 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=21.1
Q ss_pred CcceEEeeecccCchhHHHHHHHHh
Q psy2274 165 KLTLYRFLTRRTNSKFNKIILKRLF 189 (244)
Q Consensus 165 K~~ly~fl~rrt~s~fnk~i~~rl~ 189 (244)
|.|||+|+.---||.|--.|.+-|-
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN 26 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALN 26 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHh
Confidence 3589999999999999988877653
No 22
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=22.79 E-value=2.5e+02 Score=26.38 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHhhhcCchH-HHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCc
Q psy2274 64 KLYRFLTRRTNSKF-NKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPR 125 (244)
Q Consensus 64 klyr~laRrt~a~f-wk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgr 125 (244)
.++..+..=...|| ++++++.|.-|++.+ =+|.|..+.+. |++.|++++..-+.
T Consensus 85 ~~~~~~~~f~~~PfTiqRlcEl~~~P~~~y--~~~~k~~~ale------k~~~V~s~~~~~~~ 139 (288)
T PF09184_consen 85 RILELLDSFDEPPFTIQRLCELLLDPRKHY--KTLDKFLRALE------KVVLVTSTVDPFPE 139 (288)
T ss_pred HHHHHHHhcCCCChhHHHHHHHHhChhhcc--ccHHHHHHHHh------eeEEEeeeccCCCC
Confidence 33444443344777 899999999999987 56677776665 89999998865443
Done!