Query psy2274
Match_columns 244
No_of_seqs 174 out of 392
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:32:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_R 60S ribosomal protein R 100.0 3.9E-46 1.3E-50 321.4 10.0 131 35-165 1-133 (186)
2 3iz5_R 60S ribosomal protein L 100.0 1.8E-45 6.3E-50 317.6 11.0 129 35-165 1-132 (188)
3 4a17_N RPL18, 60S ribosomal pr 100.0 5.8E-45 2E-49 313.0 9.6 129 35-165 1-133 (181)
4 2zkr_o 60S ribosomal protein L 100.0 5.7E-42 2E-46 295.8 10.3 131 35-165 1-132 (188)
5 3jyw_O 60S ribosomal protein L 100.0 8.5E-40 2.9E-44 265.3 8.6 112 54-165 1-113 (121)
6 3j21_P 50S ribosomal protein L 100.0 3.7E-33 1.3E-37 225.3 9.9 110 50-165 2-112 (120)
7 1vq8_O 50S ribosomal protein L 100.0 1.5E-28 5.1E-33 197.3 11.4 106 53-165 2-108 (116)
8 3izc_R 60S ribosomal protein R 98.8 3.5E-10 1.2E-14 97.8 0.5 55 166-222 30-91 (186)
9 3iz5_R 60S ribosomal protein L 98.8 5.3E-10 1.8E-14 96.7 0.6 56 166-223 30-91 (188)
10 4a17_N RPL18, 60S ribosomal pr 98.8 3.9E-10 1.3E-14 97.1 -1.9 56 166-223 31-92 (181)
11 3jyw_O 60S ribosomal protein L 98.8 8.6E-10 2.9E-14 89.4 -0.1 56 166-223 10-72 (121)
12 3j21_L 50S ribosomal protein L 98.7 1.3E-08 4.4E-13 84.5 5.6 65 90-156 71-146 (147)
13 1vq8_L 50S ribosomal protein L 98.4 1.6E-07 5.6E-12 79.0 4.4 71 90-162 60-149 (165)
14 3r8s_L 50S ribosomal protein L 98.4 9E-09 3.1E-13 85.4 -4.4 72 76-155 55-142 (143)
15 2zkr_o 60S ribosomal protein L 98.3 8.8E-08 3E-12 82.9 0.2 56 166-221 29-89 (188)
16 4a17_K L29, RPL27A, 60S riboso 98.1 2.1E-06 7.1E-11 71.5 4.9 66 90-156 70-147 (149)
17 3o58_Y 60S ribosomal protein L 98.1 5.8E-07 2E-11 75.2 1.0 64 92-156 70-147 (149)
18 3v2d_P 50S ribosomal protein L 98.1 1.3E-07 4.4E-12 79.2 -3.1 73 76-157 57-148 (150)
19 2zjr_I 50S ribosomal protein L 98.0 4E-07 1.4E-11 76.2 -1.6 65 89-157 69-143 (156)
20 3iz5_O 60S ribosomal protein L 98.0 8.6E-08 2.9E-12 79.8 -5.8 64 92-156 70-142 (144)
21 2zkr_l 60S ribosomal protein L 98.0 2E-06 7E-11 70.8 2.4 64 93-157 71-147 (148)
22 3bbo_N Ribosomal protein L15; 97.7 7.9E-07 2.7E-11 80.0 -4.6 78 75-158 119-221 (257)
23 3j21_P 50S ribosomal protein L 97.7 4E-06 1.4E-10 67.4 -0.2 53 166-221 15-71 (120)
24 1vq8_O 50S ribosomal protein L 96.4 0.00052 1.8E-08 54.8 0.1 42 166-207 12-57 (116)
25 2cok_A Poly [ADP-ribose] polym 22.8 38 0.0013 26.3 1.9 33 110-158 12-44 (113)
26 2nx6_A Nematocyst outer WALL a 20.9 31 0.0011 21.1 0.8 10 4-14 4-13 (27)
No 1
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=100.00 E-value=3.9e-46 Score=321.40 Aligned_cols=131 Identities=40% Similarity=0.693 Sum_probs=127.4
Q ss_pred ceeec-cCcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCE
Q psy2274 35 NGVDI-CHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRV 113 (244)
Q Consensus 35 MGiD~-~~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egki 113 (244)
||||| .|+++++++|+.|+|+||||++||++|+|+||+|+||||++|++|||||+++|+|||||+|+++|+.++.+|+|
T Consensus 1 mgid~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~~r~~VnLsrI~r~~k~~g~~g~~ 80 (186)
T 3izc_R 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 80 (186)
T ss_dssp CCSSHHHHHHSCCCCCCCSCCSSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHSCTTTCCEEEHHHHHHHTTTTSSSSCE
T ss_pred CcccccccccccccCCCCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHhCCCcccCcccHHHHHHHhhccCCCCCE
Confidence 99999 67889999999999999999999999999999999999999999999999999999999999999976678999
Q ss_pred EEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 114 AVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 114 vVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
+||||||||||+|.++|+|+|||+.||++|+++|++|||+|+++|||++ +|+
T Consensus 81 vVv~gKVLg~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~ 133 (186)
T 3izc_R 81 VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPK 133 (186)
T ss_dssp EEESSEEECCCCSSCCCCEEEEESCCCHHHHHHHHHHSEECCCSHHHHHHSTT
T ss_pred EEEEeEEecCceEcccCCEEEEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999998 998
No 2
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=100.00 E-value=1.8e-45 Score=317.65 Aligned_cols=129 Identities=45% Similarity=0.749 Sum_probs=125.1
Q ss_pred ceeeccC-cccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCC-CC
Q psy2274 35 NGVDICH-KYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTRE-GR 112 (244)
Q Consensus 35 MGiD~~~-~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~e-gk 112 (244)
|||||.| +++++++|+.|+|+||||++||++|+|+||+|+||||++|++|||||+++++|||||+|+++|+ ++| |+
T Consensus 1 mgid~~~~~~~~~~~r~~~kstN~yL~~Liklyr~larrt~apf~r~V~KRLf~sr~~r~pVnLsrL~r~~k--~~e~gk 78 (188)
T 3iz5_R 1 MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMK--GKEEKN 78 (188)
T ss_dssp CCSHHHHHHTSCCCCCCCSCCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHSCTTTCCEEEHHHHHTTSC--SSSTTC
T ss_pred CccccccccccccccCCCCCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHcCCccccCcccHHHHHHHhc--cccCCC
Confidence 9999988 6899999999999999999999999999999999999999999999999999999999999998 445 99
Q ss_pred EEEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 113 VAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 113 ivVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
||||||||||||+|.++|+|+|||+.||++|+++|++|||+|+++|||++ +|+
T Consensus 79 ~VVv~gKVLg~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~ 132 (188)
T 3iz5_R 79 IAVVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLALRAPT 132 (188)
T ss_dssp EEEEEEEEECCCCSSCCSSEEEEEEECCHHHHHHHHTTSEEEEEHHHHHHHCTT
T ss_pred EEEEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998 998
No 3
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=100.00 E-value=5.8e-45 Score=313.02 Aligned_cols=129 Identities=35% Similarity=0.546 Sum_probs=122.8
Q ss_pred ceeecc--CcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCC-C
Q psy2274 35 NGVDIC--HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTRE-G 111 (244)
Q Consensus 35 MGiD~~--~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~e-g 111 (244)
|||||. |+++++++|+.|+|+||||++||++|+|+||+|+||||++|++|||||+++|+|||||+|+++|+ ++| |
T Consensus 1 mgid~~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~--~~e~g 78 (181)
T 4a17_N 1 MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLN--ETNKE 78 (181)
T ss_dssp -CBCCGGGGCCCCCSSCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCC--HHHHH
T ss_pred CccccccccccccccccCCCCCCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhc--cccCC
Confidence 999998 44589999999999999999999999999999999999999999999999999999999999998 334 8
Q ss_pred CEEEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 112 RVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 112 kivVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
+||||||||||||+|.++|+|+|||+.||++|++||++|||+|+++|||++ +|+
T Consensus 79 k~vVv~gKVLg~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~ 133 (181)
T 4a17_N 79 QVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGKCLTFDQLALKAPT 133 (181)
T ss_dssp SEEEESSEEECCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECHHHHHHHCTT
T ss_pred CEEEEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEhHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999998 998
No 4
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.7e-42 Score=295.77 Aligned_cols=131 Identities=50% Similarity=0.841 Sum_probs=107.2
Q ss_pred ceeeccCcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEE
Q psy2274 35 NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVA 114 (244)
Q Consensus 35 MGiD~~~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkiv 114 (244)
|||||+|+++++++|+.|+|+||||++||++|+|+||+|+||||++|++|+|||++++++||||+|+++++..+++++++
T Consensus 1 mg~d~~~~~~~~~~r~~~~s~n~~l~~Lvk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~ii 80 (188)
T 2zkr_o 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTA 80 (188)
T ss_dssp -------------------CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSEE
T ss_pred CceeeecCcccccccCCCCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874446789999
Q ss_pred EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 115 VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 115 VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
|++|||||||+|.+||+|+|||+.||++|+++|++|||+|++++||++ +|+
T Consensus 81 v~~~KVLg~GeL~kvpkLtV~A~~fSksArekIEaAGG~v~~idqla~~~P~ 132 (188)
T 2zkr_o 81 VVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPK 132 (188)
T ss_dssp EEEEEEECSSCCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEHHHHHHHCTT
T ss_pred EeecEEECCceecccCCeEEEEeecCHHHHHHHHHcCCEEEEhHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999998 998
No 5
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=100.00 E-value=8.5e-40 Score=265.27 Aligned_cols=112 Identities=41% Similarity=0.721 Sum_probs=109.6
Q ss_pred CcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCcee
Q psy2274 54 SKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLT 133 (244)
Q Consensus 54 StN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKlt 133 (244)
|+||||++||++|+|+||+|+||||++|+||+|||+++++|||||+|+++++.+|.+|+++|+||||||||+|.++|+++
T Consensus 1 s~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~~vvv~~KVlg~G~l~~~~kl~ 80 (121)
T 3jyw_O 1 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTT 80 (121)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSSEEEESSCBCCCSCCCSSSCCC
T ss_pred CCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCCEEEEEEEEcCCceEcccCCEE
Confidence 79999999999999999999999999999999999999999999999999998888999999999999999999889999
Q ss_pred EEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 134 IVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 134 V~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
|||+.||++|++||++|||+|+++|||++ +|+
T Consensus 81 V~a~~fS~~A~~kIe~AGG~~~~~dql~~~~P~ 113 (121)
T 3jyw_O 81 VAALRFTAGARAKIVKAGGECITLDQLAVRAPK 113 (121)
T ss_dssp EECSSBCTTTTTHHHHHTCCBCCSTTHHHHCTT
T ss_pred EEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCC
Confidence 99999999999999999999999999998 998
No 6
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.7e-33 Score=225.28 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=105.8
Q ss_pred cCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCccccc
Q psy2274 50 TKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTI 129 (244)
Q Consensus 50 k~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eV 129 (244)
+.++|+||||++||++|+|+||+|++|||+++.||+|+|+++++||||++|+++++ +|++++++|||||+|+|.
T Consensus 2 ~~~~~~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~----~g~~i~~~vKVLg~G~l~-- 75 (120)
T 3j21_P 2 KRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYAN----DGEMIVVPGSVLGAGKLE-- 75 (120)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSC----TTCEEEEEEEEECSSCCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHh----cCCEEEEEEEEcCCCeec--
Confidence 35779999999999999999999999999999999999999999999999999997 789999999999999998
Q ss_pred CceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 130 PKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 130 PKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
++++|+|+.||++|+++|++|||+|.+++||.. +|+
T Consensus 76 ~kl~V~a~~fS~~A~ekIe~AGG~v~~~~qL~~~~p~ 112 (120)
T 3j21_P 76 KKVIVAAWKFSETARRKIIEAGGEAITIEELIERNPT 112 (120)
T ss_dssp SCCEEEEEEECHHHHHHHTTTSSCEEESTTHHHHCSS
T ss_pred CCEEEEEeccCHHHHHHHHHcCCEEEEeHHHHHHCCC
Confidence 599999999999999999999999999999997 998
No 7
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.95 E-value=1.5e-28 Score=197.26 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=101.8
Q ss_pred CCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCce
Q psy2274 53 KSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKL 132 (244)
Q Consensus 53 kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKl 132 (244)
.|+||||++||++|+|+||+|+.|||+++.||..+++.++++|||++|+++++ +|++++|++||||+|++. .++
T Consensus 2 ~~~n~~l~~li~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~----~g~~ilv~vKVLg~G~l~--k~l 75 (116)
T 1vq8_O 2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ----EDETVVVPGKVLGSGVLQ--KDV 75 (116)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCC----TTSEEEEEEEEECCSCCC--SCC
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHcc----CCCEEEEEEEEeeCCeec--CCE
Confidence 48999999999999999999999999999999999999999999999999987 788888999999999998 499
Q ss_pred eEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274 133 TIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK 165 (244)
Q Consensus 133 tV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK 165 (244)
+|+|.+||++|+++|++| |+|.+++||++ +|+
T Consensus 76 ~V~a~~fSk~A~ekIeaA-G~v~~~~~l~~~~p~ 108 (116)
T 1vq8_O 76 TVAAVDFSGTAETKIDQV-GEAVSLEQAIENNPE 108 (116)
T ss_dssp EEEEEEECHHHHHHHHHH-SEEEEHHHHHHHCTT
T ss_pred EEEEEecCHHHHHHHHHc-CeEEEhHHHHHHCCC
Confidence 999999999999999999 99999999998 998
No 8
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=98.85 E-value=3.5e-10 Score=97.77 Aligned_cols=55 Identities=45% Similarity=0.675 Sum_probs=49.7
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCC---CCcccccccccccccch
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKP---TNTLALLPVFPTVTRKL 222 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~---~~~~~~~~v~~tvt~~~ 222 (244)
++||+||+|+|+++||+.|++|||||++|+ +|+++..++. +++ ++||+++|++|-
T Consensus 30 vklyr~larrt~apf~r~V~KRLf~sr~~r~~VnLsrI~r~~k~~g~~g~--~vVv~gKVLg~G 91 (186)
T 3izc_R 30 VKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANK--TVVVVGTVTDDA 91 (186)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHSCTTTCCEEEHHHHHHHTTTTSSSSC--EEEESSEEECCC
T ss_pred HHHHHHHHhhhCChHHHHHHHHHhCCCcccCcccHHHHHHHhhccCCCCC--EEEEEeEEecCc
Confidence 699999999999999999999999999999 9999999983 555 458899999875
No 9
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=98.82 E-value=5.3e-10 Score=96.74 Aligned_cols=56 Identities=46% Similarity=0.660 Sum_probs=49.4
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCC-C-Ccccccccccccccchh
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKP-T-NTLALLPVFPTVTRKLT 223 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~-~-~~~~~~~v~~tvt~~~~ 223 (244)
+++|+||+|+|+++||+.|++|||||++|+ +|+++..++. + +++ .||+++|+.|-.
T Consensus 30 iklyr~larrt~apf~r~V~KRLf~sr~~r~pVnLsrL~r~~k~~e~gk~--VVv~gKVLg~G~ 91 (188)
T 3iz5_R 30 VKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMKGKEEKNI--AVVVGTITDDMR 91 (188)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHSCTTTCCEEEHHHHHTTSCSSSTTCE--EEEEEEEECCCC
T ss_pred HHHHHHHHhccCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCE--EEEEEEEcCCce
Confidence 799999999999999999999999999999 9999999983 3 554 578899998753
No 10
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=98.77 E-value=3.9e-10 Score=97.14 Aligned_cols=56 Identities=39% Similarity=0.570 Sum_probs=49.3
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCC-C-Ccccccccccccccchh
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKP-T-NTLALLPVFPTVTRKLT 223 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~-~-~~~~~~~v~~tvt~~~~ 223 (244)
+++|+||+|||+++||+.|++|||||++|+ +|+++..++. + +++ .||+++|+.|-.
T Consensus 31 vklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~~~e~gk~--vVv~gKVLg~G~ 92 (181)
T 4a17_N 31 IKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLNETNKEQV--IVSTSTVTNDER 92 (181)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCCHHHHHSE--EEESSEEECCTT
T ss_pred HHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCE--EEEEEEEcCCce
Confidence 799999999999999999999999999999 9999999982 3 454 578899998753
No 11
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=98.76 E-value=8.6e-10 Score=89.39 Aligned_cols=56 Identities=45% Similarity=0.660 Sum_probs=48.6
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-C--CCcccccccccccccchh
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-P--TNTLALLPVFPTVTRKLT 223 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~--~~~~~~~~v~~tvt~~~~ 223 (244)
+++|+||+|||+++||+.|+||+|||++|+ +|+++..++ + +++ +.+++++|++|-.
T Consensus 10 vkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~--~vvv~~KVlg~G~ 72 (121)
T 3jyw_O 10 VKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANK--TVVVVGTVTDDAR 72 (121)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSS--EEEESSCBCCCSC
T ss_pred HHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCC--EEEEEEEEcCCce
Confidence 689999999999999999999999999999 999999887 2 455 3477899998753
No 12
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.71 E-value=1.3e-08 Score=84.54 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=54.2
Q ss_pred cCCCcccHHHHHHHhcC------CCCCCCEEEEE-----eeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274 90 INRPPMAISKIVRFMKK------PTREGRVAVIV-----GTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD 156 (244)
Q Consensus 90 rnR~pVnLSKI~R~~k~------~~~egkivVVv-----GKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T 156 (244)
...++|||++|..+... -.++++.+||. .|||++|.|.. +|+|.|..||++|+++|+.|||+|..
T Consensus 71 ~~~~~VNL~~L~~l~~~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~--~v~Vka~~fS~~A~ekIeaaGG~v~~ 146 (147)
T 3j21_L 71 REVRVVNLKFIDEHLDELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTR--PLVIKARAFSPKAEEKIKAAGGEAVL 146 (147)
T ss_dssp CCCCEEEHHHHHHTTTTTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSS--CEEEEESEECHHHHHHHHHTTCEEEE
T ss_pred ceeEEEEHHHHHHHHHHHHHcCcccccCCcceecccccCcEEecCCccCc--CEEEEEEecCHHHHHHHHHcCCEEEe
Confidence 46899999999987631 11346677787 89999999873 89999999999999999999999963
No 13
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=98.41 E-value=1.6e-07 Score=79.01 Aligned_cols=71 Identities=8% Similarity=-0.033 Sum_probs=52.8
Q ss_pred cCCCcccHHHHHHHhcC---CC---CCCCEEEEE-----------e--eeecCCcccccCceeEEEeeeccchhhhhhhc
Q psy2274 90 INRPPMAISKIVRFMKK---PT---REGRVAVIV-----------G--TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVI 150 (244)
Q Consensus 90 rnR~pVnLSKI~R~~k~---~~---~egkivVVv-----------G--KVldDgrL~eVPKltV~AL~fS~sAr~KI~kA 150 (244)
...++|||++|.++... .+ .++...||- | |||++|.|.. +|+|-|..||++|+++|+.+
T Consensus 60 ~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~~~vKVLG~G~l~k--~l~Vka~~fSk~A~ekIeaA 137 (165)
T 1vq8_L 60 EEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRH--ELTLIADDFSEGAREKVEGA 137 (165)
T ss_dssp CCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCCS--CCEEEESEECHHHHHHHHHT
T ss_pred ceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccCCceEEecCCccCC--CEEEEEEecCHHHHHHHHHc
Confidence 56889999999988510 01 122322343 4 9999999884 89999999999999999999
Q ss_pred CcEEeehhhhhc
Q psy2274 151 VGTIVDDPRMWT 162 (244)
Q Consensus 151 GGki~TidrL~e 162 (244)
||+|..+..-.|
T Consensus 138 GG~v~~i~~~~~ 149 (165)
T 1vq8_L 138 GGSVELTDLGEE 149 (165)
T ss_dssp TCEEEECTTTCC
T ss_pred CCEEEEeechhh
Confidence 999998765333
No 14
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=98.36 E-value=9e-09 Score=85.35 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcc--ccCCCcccHHHHHHHhcCCCCCCCEE---------EE-----EeeeecCCcccccCceeEEEeee
Q psy2274 76 KFNKIILKRLFMS--KINRPPMAISKIVRFMKKPTREGRVA---------VI-----VGTIVDDPRMWTIPKLTIVRFMK 139 (244)
Q Consensus 76 ~fwk~VakRL~ms--rrnR~pVnLSKI~R~~k~~~~egkiv---------VV-----vGKVldDgrL~eVPKltV~AL~f 139 (244)
|||+.+-+|=|.+ ++.+++|||++|+++. +++| +| +-|||++|.|. .+|+|.|..|
T Consensus 55 Pl~rRlPK~GF~~~~~~~y~~VNL~~L~~~~------~~~I~~~~L~~~glv~~~~~~VKVLg~Gel~--~~l~V~a~~~ 126 (143)
T 3r8s_L 55 PLYRRLPKFGFTSRKAAITAEIRLSDLAKVE------GGVVDLNTLKAANIIGIQIEFAKVILAGEVT--TPVTVRGLRV 126 (143)
T ss_dssp CHHHHSCCCCCCCSTGGGEEECCSSSSSCSS------SSEEEHHHHGGGTSSCTTCCEEECCCCSCCC--SCCEEESSCC
T ss_pred ccEEEccccccCCcccceeEEEEHHHhhhcc------CCeecHHHHHHcCccccCCCceEEeeCCccc--ccEEEEEEec
Confidence 5555555555543 5678999999998652 2444 33 78999999987 4899999999
Q ss_pred ccchhhhhhhcCcEEe
Q psy2274 140 KPTREGRVAVIVGTIV 155 (244)
Q Consensus 140 S~sAr~KI~kAGGki~ 155 (244)
|++|+++|++|||+|.
T Consensus 127 SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 127 TKGARAAIEAAGGKIE 142 (143)
T ss_dssp CHHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHcCCEEe
Confidence 9999999999999985
No 15
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.30 E-value=8.8e-08 Score=82.86 Aligned_cols=56 Identities=48% Similarity=0.686 Sum_probs=44.1
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-CCCcccccccccccccc
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-PTNTLALLPVFPTVTRK 221 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~~~~~~~~~v~~tvt~~ 221 (244)
+++|+||+|||+++||+.|.||+|||+.|+ +|+|+..+. +.+...++++.++|+.|
T Consensus 29 vk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~iiv~~~KVLg~ 89 (188)
T 2zkr_o 29 VKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDD 89 (188)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSEEEEEEEEECS
T ss_pred HHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcEEEeecEEECC
Confidence 799999999999999999999999999998 899987652 22222345666788775
No 16
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=98.12 E-value=2.1e-06 Score=71.47 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=50.6
Q ss_pred cCCCcccHHHHHHHhcCC------CCCCCEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274 90 INRPPMAISKIVRFMKKP------TREGRVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD 156 (244)
Q Consensus 90 rnR~pVnLSKI~R~~k~~------~~egkivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T 156 (244)
...++|||++|....... ..+++..|| ..|||++|.|.+ .+|+|.|..||++|+++|+.|||+|..
T Consensus 70 ~~~~~VNLdkL~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~-~~v~v~a~~fS~~A~~kIe~aGG~~~~ 147 (149)
T 4a17_K 70 LHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPN-QPVVVKAKYFSKTAERRIVAVGGACVL 147 (149)
T ss_dssp GCCCEEEGGGHHHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCS-SCCEEEESEECHHHHHHHHHTTCEEEE
T ss_pred ceeeEEEHHHHHHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCC-CCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 346899999997764310 023444455 489999999833 479999999999999999999999974
No 17
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=98.09 E-value=5.8e-07 Score=75.15 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=50.3
Q ss_pred CCcccHHHHHHHhcCC--------CCCCCEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274 92 RPPMAISKIVRFMKKP--------TREGRVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD 156 (244)
Q Consensus 92 R~pVnLSKI~R~~k~~--------~~egkivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T 156 (244)
.|+|||.+|....... +++++..|| +.|||++|.|.+ .+|+|.|..||++|+++|+.|||+|..
T Consensus 70 ~~~INldkL~~lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~-~~v~Vka~~fS~~A~ekIe~aGG~~~~ 147 (149)
T 3o58_Y 70 KPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN-VPVIVKARFVSKLAEEKIRAAGGVVEL 147 (149)
T ss_dssp CCSTTTTHHHHCSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCS-CCEEECSSCCTTTTHHHHGGGSCEEEC
T ss_pred cceEEHHHHHHHhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCC-CCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 5799999998876421 113444444 599999999832 479999999999999999999999974
No 18
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=98.09 E-value=1.3e-07 Score=79.16 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcc-------ccCCCcccHHHHHHHhcCCCCCCCEE------------EEEeeeecCCcccccCceeEEE
Q psy2274 76 KFNKIILKRLFMS-------KINRPPMAISKIVRFMKKPTREGRVA------------VIVGTIVDDPRMWTIPKLTIVR 136 (244)
Q Consensus 76 ~fwk~VakRL~ms-------rrnR~pVnLSKI~R~~k~~~~egkiv------------VVvGKVldDgrL~eVPKltV~A 136 (244)
||++.+=||=|.+ +..+++|||++|++ .. |.|- ..+.|||++|.|. +|+|.|
T Consensus 57 Pl~rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~-----G~I~~~~L~~~glv~~~~~VKvLg~G~l~---~v~V~a 127 (150)
T 3v2d_P 57 TTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FE-----GEVTPELLVRAGLLKKGYRLKILGEGEAK---PLKVVA 127 (150)
T ss_dssp CTTTTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CC-----SEECHHHHHTTTSSCTTCEEEEECSSCCC---SCEECB
T ss_pred ccEEEcCccCccCccccccccceEEEEEHHHHhh-cC-----CcccHHHHHHCCCcccccceEEEecCCcc---cEEEEE
Confidence 4445454544444 56788999999987 32 2111 1378999999976 899999
Q ss_pred eeeccchhhhhhhcCcEEeeh
Q psy2274 137 FMKKPTREGRVAVIVGTIVDD 157 (244)
Q Consensus 137 L~fS~sAr~KI~kAGGki~Ti 157 (244)
..||++|+++|+.+||+|..+
T Consensus 128 ~~~S~~A~~kIe~aGG~v~~~ 148 (150)
T 3v2d_P 128 HAFSKSALEKLKAAGGEPVLL 148 (150)
T ss_dssp SCBCHHHHHHHHHTTCBCCBC
T ss_pred EEcCHHHHHHHHHcCCEEEEe
Confidence 999999999999999999765
No 19
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=98.01 E-value=4e-07 Score=76.16 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=50.4
Q ss_pred ccCCCcccHHHHHHHhcCCCCCC-CEE---------EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274 89 KINRPPMAISKIVRFMKKPTREG-RVA---------VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD 157 (244)
Q Consensus 89 rrnR~pVnLSKI~R~~k~~~~eg-kiv---------VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti 157 (244)
+..+++|||++|.++.. +.-+ +.. ..+.|||++|.|. .+|+|-|..||++|+++|+.|||+|..+
T Consensus 69 ~~~~~~VNL~~L~~l~~--~~i~~~~L~~~gli~~~~~~vKVLG~G~l~--~~l~Vka~~fSk~A~ekIEaAGG~v~~i 143 (156)
T 2zjr_I 69 GTTYEVVKLSQLQDLED--TTFDRDTLEAYRLVRRKNRPVKLLASGEIS--RAVTVHVDAASAAAIKAVEAAGGRVVLP 143 (156)
T ss_dssp CCCCCEECHHHHTTSCC--CCCCTTTTHHHHHCCCCSSCCEECCCCCCC--CCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred ceEEEeechhHHHhhhc--CCcCHHHHHhCCcEeccccceEEeeCCccC--cCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 56789999999998643 1000 000 1357999999987 4899999999999999999999999654
No 20
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=98.00 E-value=8.6e-08 Score=79.78 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCcccHHHHHHHhcCC--CCCCCEEEEE------eeeecCCccc-ccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274 92 RPPMAISKIVRFMKKP--TREGRVAVIV------GTIVDDPRMW-TIPKLTIVRFMKKPTREGRVAVIVGTIVD 156 (244)
Q Consensus 92 R~pVnLSKI~R~~k~~--~~egkivVVv------GKVldDgrL~-eVPKltV~AL~fS~sAr~KI~kAGGki~T 156 (244)
.|+|||++|....... .++|+..||. .|||++|.|. + .+|+|.|..||++|+++|+.|||+|..
T Consensus 70 ~~~VNl~kL~~lv~~~~a~~~~~~~vIDl~~~G~~KvLG~G~l~~~-~~v~Vka~~fS~~A~ekIe~aGG~v~~ 142 (144)
T 3iz5_O 70 CPAVNVERLWSMVPAEAGAGAGKAPVIDVTQFGYTKVLGKGMLPPE-RPIVVKAKLISKVAEKKIKAAGGAVLL 142 (144)
T ss_dssp CEEEGGGTSTTCTTSSEEEEECCSCCCSCCEEEESEECHHHHSTTC-TTCCCEECGGGSSCSCCCSSCCCCCCC
T ss_pred cceEEHHHHHHHhHHhhhccCCCceEEEeeccCcEEEeCCCccCCc-cCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 4799999998887410 1245555664 9999999983 2 489999999999999999999999864
No 21
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=97.99 E-value=2e-06 Score=70.77 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred CcccHHHHHHHhcCCCCCC-------CEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274 93 PPMAISKIVRFMKKPTREG-------RVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD 157 (244)
Q Consensus 93 ~pVnLSKI~R~~k~~~~eg-------kivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti 157 (244)
++|||++|+.+.......+ +.-|| .-|||++|.|.. .+|+|-|..||++|+++|+.|||+|..+
T Consensus 71 ~~VNl~~L~~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel~k-~~l~Vka~~fSk~A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 71 PTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLV 147 (148)
T ss_dssp CEEETHHHHHHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCCCS-SCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred ceEEHHHHHhhhhcCcEEehhhhccccCCeEeccccCceEEecCCcccc-CCEEEEEEecCHHHHHHHHHcCCEEEec
Confidence 8999999998854211111 11122 149999999873 4899999999999999999999999753
No 22
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.74 E-value=7.9e-07 Score=80.03 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=57.3
Q ss_pred chHHHHHHH-H----Hhc-cccCCCcccHHHHHHH-hcCCCCCCCE------------------EEEEeeeecCCccccc
Q psy2274 75 SKFNKIILK-R----LFM-SKINRPPMAISKIVRF-MKKPTREGRV------------------AVIVGTIVDDPRMWTI 129 (244)
Q Consensus 75 a~fwk~Vak-R----L~m-srrnR~pVnLSKI~R~-~k~~~~egki------------------vVVvGKVldDgrL~eV 129 (244)
-|+|+.+-+ | .+. .+..+++|||++|+++ .. ++++ ..-..|||++|.|.
T Consensus 119 mPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~~lr~~----eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLt-- 192 (257)
T 3bbo_N 119 MPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQ----DGEEVSLETLKAKRVINPSGRERKLPLKILADGELS-- 192 (257)
T ss_dssp SSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCSCSSTT----TTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCC--
T ss_pred CcchhhcccccccCCccccCcceeeeEeHHHHhhcccC----CCCEeCHHHHHhCCcccccccccCccEEEEeCCccC--
Confidence 355555555 2 222 3567899999999864 32 1111 11256999999987
Q ss_pred CceeEEEeeeccchhhhhhhcCcEEeehh
Q psy2274 130 PKLTIVRFMKKPTREGRVAVIVGTIVDDP 158 (244)
Q Consensus 130 PKltV~AL~fS~sAr~KI~kAGGki~Tid 158 (244)
.+|+|-|..||++|+++|+.+||+|..+.
T Consensus 193 kkLtVkA~~fSksA~eKIEaAGG~v~~i~ 221 (257)
T 3bbo_N 193 KKLTIKAGAFSTSAKEKLEYAGCSLIVLP 221 (257)
T ss_dssp SSCCCCSSCCTGGGTTSSTTTTCCEECCC
T ss_pred CCeEEEEEecCHHHHHHHHHcCCEEEEee
Confidence 48999999999999999999999998774
No 23
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.72 E-value=4e-06 Score=67.45 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=41.9
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCCcccccccccccccc
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTNTLALLPVFPTVTRK 221 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~~~~~~~v~~tvt~~ 221 (244)
+++|+|++|||+++|++.+.||+|+|+.+. +|+|+..+...+ + .++.+.|..|
T Consensus 15 i~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~~g~-~--i~~~vKVLg~ 71 (120)
T 3j21_P 15 IRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGE-M--IVVPGSVLGA 71 (120)
T ss_dssp HHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSCTTC-E--EEEEEEEECS
T ss_pred HHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHhcCC-E--EEEEEEEcCC
Confidence 789999999999999999999999998888 899988775333 2 3334455544
No 24
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=96.41 E-value=0.00052 Score=54.76 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=35.9
Q ss_pred cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCC
Q psy2274 166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTN 207 (244)
Q Consensus 166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~ 207 (244)
+++|+|++|||+.+|++.+.||..+++.+. +++++..+...+
T Consensus 12 i~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~~g~ 57 (116)
T 1vq8_O 12 IADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDE 57 (116)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCCTTS
T ss_pred HHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHccCCC
Confidence 689999999999999999999997777776 899987665433
No 25
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=22.81 E-value=38 Score=26.34 Aligned_cols=33 Identities=6% Similarity=0.178 Sum_probs=25.8
Q ss_pred CCCEEEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehh
Q psy2274 110 EGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDP 158 (244)
Q Consensus 110 egkivVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Tid 158 (244)
.|+++|+-|+.-. .| +.|.+.|+..||++.+-.
T Consensus 12 ~G~~~ViTG~l~~-~R---------------~e~k~~ie~~Ggkv~~sV 44 (113)
T 2cok_A 12 SNMKILTLGKLSR-NK---------------DEVKAMIEKLGGKLTGTA 44 (113)
T ss_dssp SSCEEEECSCCSS-CH---------------HHHHHHHHHTTCEEESCS
T ss_pred CCCEEEEEecCCC-CH---------------HHHHHHHHHCCCEEcCcc
Confidence 6899999998622 22 578999999999997543
No 26
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=20.92 E-value=31 Score=21.13 Aligned_cols=10 Identities=40% Similarity=1.158 Sum_probs=7.0
Q ss_pred cccccCCCccc
Q psy2274 4 VCAQQIPNCNK 14 (244)
Q Consensus 4 ~~~~~~~~~~~ 14 (244)
.||| ||.|+-
T Consensus 4 scpq-fpscsp 13 (27)
T 2nx6_A 4 SCPQ-FPSCSP 13 (27)
T ss_dssp SSTT-CTTCCG
T ss_pred cCCC-CCCCCC
Confidence 4775 788874
Done!