RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2274
         (244 letters)



>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 56  DVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAV 115
           +  L  L+   +   R +       + +RL   +     + + +I R+ +    E    V
Sbjct: 4   NPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ----EDETVV 59

Query: 116 IVGTIVDDPRMWTIPKLTIVRFMKK 140
           + G ++    +     +  V F   
Sbjct: 60  VPGKVLGSGVLQKDVTVAAVDFSGT 84



 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKINSIS---ERELDVKPTNTLALLPVFPTVTRKLTS 224
             +   R +       + +RL   +         R       +   ++P     +  L  
Sbjct: 13  DLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQK 72

Query: 225 DLKAASL 231
           D+  A++
Sbjct: 73  DVTVAAV 79


>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus),
          s100b [TaxId: 9913]}
          Length = 90

 Score = 24.7 bits (54), Expect = 4.1
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 37 VDICHKYDRRVRRTKPKSKDVYLELLVKLY-RFLTRRTNSKFNKIILKRL 85
          +D+ H+Y  R        K    EL+      FL      +    +++ L
Sbjct: 12 IDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61


>d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977
           {Rhodococcus sp. RHA1 [TaxId: 101510]}
          Length = 165

 Score = 24.8 bits (54), Expect = 8.6
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 9/50 (18%)

Query: 122 DDPRM-----WTIPKL----TIVRFMKKPTREGRVAVIVGTIVDDPRMWT 162
           D P+      W +P L    +I  +     R+    V +GT      +W 
Sbjct: 43  DHPQFHYLESWLLPDLGLRASIFHYHPYHQRDQDHYVDIGTFTRGDDVWK 92


>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for
           secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 24.2 bits (51), Expect = 9.5
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 30  GSSGQNGVDIC---HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLF 86
           GSSG +G+          + V +   K   V +++    +   + R      + +L+   
Sbjct: 1   GSSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDG 60

Query: 87  MSKINRPPMAISKIVRFMKKPTREGRV 113
            +     P    +  R      +EG  
Sbjct: 61  YTVDYTDPQPGLEGGRAFFNAVKEGDT 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 900,657
Number of extensions: 43232
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 6
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)