BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2275
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A1X|A Chain A, Human Phytanoyl-Coa 2-Hydroxylase In Complex With Iron And
2- Oxoglutarate
Length = 308
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 95/161 (59%), Positives = 122/161 (75%), Gaps = 3/161 (1%)
Query: 181 EYLYNKVQELVYDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHPL 240
E + KVQ+ D+ +Y ++L YVE F GP+I A+H+MLINKPPD+G +TSRHPL
Sbjct: 85 EKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPL 144
Query: 241 HQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEGGVNAM 300
HQDLHYFP RP+ IV AWTAME I ++NGCL VLP TH+ GSL H+YP+WEGGVN M
Sbjct: 145 HQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHK--GSLKPHDYPKWEGGVNKM 202
Query: 301 YHGIRGFDSHD-KLNLYMERGDTVFFHPLLIHGSGTNVTKA 340
+HGI+ ++ + +++L ME+GDTVFFHPLLIHGSG N T+
Sbjct: 203 FHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 243
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 41/170 (24%)
Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKYK-------- 482
FS + + +N+G +G IGHEITHGFD G F+K+G ++WW + +K
Sbjct: 511 FSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVY 570
Query: 483 ----ILWLL----HL------------------------PWAANRPEEPRLPGLQRFSPR 510
W L HL + EE LPGL + +
Sbjct: 571 QYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLD-LNHK 629
Query: 511 QMFWVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDF 560
Q+F+++ A +CG RPE +++ D H+P +R +G+L NS EF F
Sbjct: 630 QLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAF 679
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 31 VKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQ-----VMSFSSTYLTEEMNNRYF 85
+ +E V + AP++ +P+L R L N + W+ V S S TY +E N
Sbjct: 284 ITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTY--KESRN--- 338
Query: 86 KFSSTLRGVTARKPRWQECVDETK-DLDIAVGALYIRKYFNQDAKANVETMVRLILDETY 144
F L G T+ W+ C + +++ AVG LY+ F ++K VE ++ I +
Sbjct: 339 AFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFI 398
Query: 145 KYLSTVDWMDPNTRLAAQDKVKAIIPYVAYPQELLG--EYLYNKVQELVY--DEVFEKYT 200
+ L + WMD T+ A++K AI + YP +++ L N+ EL Y DE FE
Sbjct: 399 QTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENII 458
Query: 201 MHKKL 205
+ K
Sbjct: 459 QNLKF 463
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 562 TGSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGS-VNGVNTL 613
G F+K+G +WW + +K +S+CMV QYG + G +NG+NTL
Sbjct: 539 NGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTL 591
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 43 DFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKFSSTLRGVTARK-PRW 101
++ L+ T + +L NY++W ++ +S++L + + KF + G PRW
Sbjct: 273 EYLEQISTLINTTDRCLLNNYMIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRW 332
Query: 102 QECVDETKD-LDIAVGALYIRKYFNQDAKANVETMVRLILDETYKYLSTVDWMDPNTRLA 160
+ CV +T++ L A+G ++++ F +D+K+ ++ I + LST+ WMD TR +
Sbjct: 333 KFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRKS 392
Query: 161 AQDKVKAIIPYVAYPQELLGEYLYNKVQELVYDEVFEKYT 200
A++K AI + YP ++ +EL D+VF YT
Sbjct: 393 AKEKADAIYNMIGYPNFIMDP------KEL--DKVFNDYT 424
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 38/167 (22%)
Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKY--------- 481
++ P +NFG +G +GHE+TH FD G +DK+G WW S+ E +
Sbjct: 488 YTRSSPKALNFGGIGVVVGHELTHAFDDQGREYDKDGNLRPWWKNSSVEAFKRQTECMVE 547
Query: 482 ----------------------------KILWLLHLPWAANRPEEPRLPGLQRFSPRQMF 513
K + + W E LP L + Q+F
Sbjct: 548 QYSNYSVNGEPVNGRHTLGENIADNGGLKAAYRAYQNWVKKNGAEHSLPTLG-LTNNQLF 606
Query: 514 WVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDF 560
++ A +C ++ PE + L+ D H+P +R +GSL+NS EF F
Sbjct: 607 FLGFAQVWCSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHF 653
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 563 GSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGS-VNGVNTL 613
G +DK+G WW S+ E +K +++CMV+QY Y VNG VNG +TL
Sbjct: 517 GREYDKDGNLRPWWKNSSVEAFKRQTECMVEQYSNY---SVNGEPVNGRHTL 565
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 337 VTKAVLGTSQRSAGRTQRLANPVVKAYLEYMVDIAVMMGASRETA-QQELTASLQFESRL 395
V ++ LG R + V+ YL YMV + ++G E A + ++ L FE+ L
Sbjct: 155 VDQSGLGLPSRDYYLNKTENEKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETAL 214
Query: 396 RNITKSNEEYRKMSKLSNLVTISHLEHKYPIL 427
NIT E+ R + + VT + L+ P +
Sbjct: 215 ANITIPQEKRRDEELIYHKVTAAELQTLAPAI 246
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 6 RAFAGRKNELAGRGLDKPDLSHLSPVKPDEVVNL--EAPDFFRSFEPLLKATPKRVLANY 63
R FA + E G G D PD + L PD+ +F L + +
Sbjct: 265 RTFAQLQTE--GAGFDWVSWVTALGSAPDAMTELVVRQPDYLVTFASLWASVNVEDWKCW 322
Query: 64 LLWQVMSFSSTYLTEEMNNRYFKF-SSTLRGVTARKPRWQECVDETKDL-DIAVGALYIR 121
W+++ + +LT + F+F TL G + RW+ V ++L AVG LY++
Sbjct: 323 ARWRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGDAVGKLYVQ 382
Query: 122 KYFNQDAKANVETMVRLILDETYKY-LSTVDWMDPNTRLAAQDKVKAIIPYVAYP 175
++F DAK+ ++T+V L E Y+ +S +DWM P TR A K+ V YP
Sbjct: 383 RHFPPDAKSRIDTLVD-NLQEAYRISISELDWMTPQTRQRALAKLNKFTAKVGYP 436
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 440 NFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKY 481
N+G +G IGHEI HGFD G+++D +G ++WW R ++
Sbjct: 519 NYGGIGAVIGHEIGHGFDDQGAKYDGDGNLVDWWTDDDRTEF 560
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 555 EFGRDFG-TGSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYV---------VPEVN 604
E G F G+++D +G +WW R ++ ++K +++QY Y P V
Sbjct: 530 EIGHGFDDQGAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPHVQ 589
Query: 605 GSVN---GVNTLVGLAIAI 620
G+ + L GL+IA+
Sbjct: 590 GAFTIGENIGDLGGLSIAL 608
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 (Apo)
pdb|3OBZ|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 2- Oxoglutarate And Iron Complex
Length = 291
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 3/147 (2%)
Query: 192 YDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHPLHQDLHYFPHRP 251
+D VF+ T K+ S + SM I K P G + S H QD + P
Sbjct: 110 HDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEP 166
Query: 252 AHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEGGVNAMYHGIRGFDSHD 311
R++ W A+E +NGCL+ +P +H S P + D+
Sbjct: 167 LGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSL 226
Query: 312 KLNLYMERGDTVFFHPLLIHGSGTNVT 338
+ ++RG V H ++H S N++
Sbjct: 227 FVPTPVQRGALVLIHGEVVHKSKQNLS 253
>pdb|3GJA|A Chain A, Cytc3
pdb|3GJA|B Chain B, Cytc3
pdb|3GJB|A Chain A, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
pdb|3GJB|B Chain B, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
Length = 319
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 194 EVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINK-PPDAGTQ-----TSRHPLHQDLHYF 247
++ ++ M +++D V S IG ++ S K D GT T H + +
Sbjct: 75 DLLAEHIMRPEIVDRVGSLIGRNLLCWRSEFFPKYQGDEGTDWHQAATFAHATGKPQIIW 134
Query: 248 PH---RPAH-RIVAAWTAMERIDKDNGCLFVLPRTH 279
P RPA + WTA + NGCL ++P TH
Sbjct: 135 PSDEGRPAFIGTITVWTAFTHSTEQNGCLQLMPGTH 170
>pdb|2FCT|A Chain A, Syrb2 With Fe(Ii), Chloride, And Alpha-Ketoglutarate
pdb|2FCT|B Chain B, Syrb2 With Fe(Ii), Chloride, And Alpha-Ketoglutarate
pdb|2FCU|A Chain A, Syrb2 With Alpha-Ketoglutarate
pdb|2FCU|B Chain B, Syrb2 With Alpha-Ketoglutarate
pdb|2FCV|A Chain A, Syrb2 With Fe(Ii), Bromide, And Alpha-Ketoglutarate
pdb|2FCV|B Chain B, Syrb2 With Fe(Ii), Bromide, And Alpha-Ketoglutarate
Length = 313
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 193 DEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINK-PPDAGTQTSRHPLHQDLHYFPHR- 250
D+ + ++ D VES +GP++ + K P D GT + + P
Sbjct: 75 DDFLASHICRPEICDRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQII 134
Query: 251 -PAHR----IVAAWTAMERIDKDNGCLFVLPRTH 279
P + + WTA + NGCL +P T
Sbjct: 135 WPENEEFGGTITVWTAFTDANIANGCLQFIPGTQ 168
>pdb|4H62|Q Chain Q, Structure Of The Saccharomyces Cerevisiae Mediator
Subcomplex Med17cMED11CMED22C
Length = 312
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 397 NITKSNEEYRKMSKLSNL------VTISHLEHKYPILGTSFSNDRPSYMN-FGSMGWTIG 449
NITK N+E R KL N+ + + EHK P L S + P+Y N + ++ G
Sbjct: 220 NITKLNKEIRAFDKLLNIPRRELKINLPLTEHKSPNL--SLXLESPNYCNALIHIKFSAG 277
Query: 450 HEITH-GFDSTGSRF 463
E FD+T S F
Sbjct: 278 TEANAVSFDTTFSDF 292
>pdb|3OUT|A Chain A, Crystal Structure Of Glutamate Racemase From Francisella
Tularensis Subsp. Tularensis Schu S4 In Complex With
D-Glutamate.
pdb|3OUT|B Chain B, Crystal Structure Of Glutamate Racemase From Francisella
Tularensis Subsp. Tularensis Schu S4 In Complex With
D-Glutamate.
pdb|3OUT|C Chain C, Crystal Structure Of Glutamate Racemase From Francisella
Tularensis Subsp. Tularensis Schu S4 In Complex With
D-Glutamate
Length = 268
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 358 PVVKAYLEYMVDIAVMMGASRETAQQELTASLQFESRLRNITKSNEEYR 406
P++K + ++D+ ++ S + ++ SL FE++L N TKSN EYR
Sbjct: 190 PIIKESIAKILDVK-LIDPSLQASKX--LYSLLFENKLLNTTKSNPEYR 235
>pdb|4GWP|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 687
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 355 LANPVVKAYLEYMVDIAVMMGASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNL 414
L ++K Y+ +V + + E Q + ++ E NITK N+E R KL N+
Sbjct: 557 LLKKIIKDYVLDIVPGSSITETEVEREQPQENKNIDDE----NITKLNKEIRAFDKLLNI 612
Query: 415 ------VTISHLEHKYPILGTSFSNDRPSYMN-FGSMGWTIGHEITH-GFDSTGSRF 463
+ + EHK P L S + P+Y N + ++ G E FD+T S F
Sbjct: 613 PRRELKINLPLTEHKSPNL--SLMLESPNYCNALIHIKFSAGTEANAVSFDTTFSDF 667
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,229,742
Number of Sequences: 62578
Number of extensions: 912244
Number of successful extensions: 1942
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 24
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)