RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2275
         (625 letters)



>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
           endothelin-converting enzyme I.  M13 family of
           metallopeptidases includes neprilysin (neutral
           endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
           3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
           3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
           phosphate-regulating gene on the X chromosome (PHEX),
           soluble secreted endopeptidase (SEP), and damage-induced
           neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
           These proteins consist of a short N-terminal cytoplasmic
           domain, a single transmembrane helix, and a larger
           C-terminal extracellular domain containing the active
           site. Proteins in this family fulfill a broad range of
           physiological roles due to the greater variation in the
           S2' subsite allowing substrate specificity. NEP is
           expressed in a variety of tissues including kidney and
           brain, and is involved in many physiological and
           pathological processes, including blood pressure and
           inflammatory response. It degrades a wide array of
           substrates such as substance P, enkephalins,
           cholecystokinin, neurotensin and somatostatin.  It is an
           important enzyme in the regulation of amyloid-beta
           (Abeta) protein that forms amyloid plaques that are
           associated with Alzeimers disease (AD). ECE-1 catalyzes
           the final rate-limiting step in the biosynthesis of
           endothelins via post-translational conversion of the
           biologically inactive big endothelins. Like NEP, it also
           hydrolyses bradykinin, substance P, neurotensin and
           Abeta.  Endothelin-1 overproduction has been implicated
           in various diseases, including stroke, asthma,
           hypertension, and cardiac and renal failure. Kell is a
           homolog of NEP and constitutes a major antigen on human
           erythrocytes; it preferentially cleaves big endothelin-3
           to produce bioactive endothelin-3, but is also known to
           cleave substance P and neurokinin A. PHEX forms a
           complex interaction with fibroblast growth factor 23
           (FGF23) and matrix extracellular phosphoglycoprotein,
           causing bone mineralization. A loss-of-function mutation
           in PHEX disrupts this interaction leading to
           hypophosphatemic rickets; X-linked hypophosphatemic
           (XLH) rickets is the most common form of metabolic
           rickets. ECEL1 is a brain metalloprotease involved in
           the critical role in the nervous regulation of the
           respiratory system, while DINE (damage induced neuronal
           endopeptidase) is abundantly expressed in the
           hypothalamus and its expression responds to nerve injury
           as well. Thus, majority of these M13 proteases are prime
           therapeutic targets for selective inhibition.
          Length = 611

 Score =  158 bits (401), Expect = 3e-41
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 4/171 (2%)

Query: 25  LSHLSPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRY 84
           L  L     DE V +  PD+ +    LL +TP R L NYL+W+++   + YL+EE  +  
Sbjct: 202 LEALGLPSEDEKVIVTQPDYLKKLNKLLASTPLRTLKNYLIWRLLDSLAPYLSEEFRDAN 261

Query: 85  FKFSSTLRGVTARKPRWQECVDETKD-LDIAVGALYIRKYFNQDAKANVETMVRLILDET 143
           F +  TL G   ++PRW+ CV      L  A+G LY+RKYF  +AKA VE +V  +    
Sbjct: 262 FFYGKTLSGTKEQRPRWKRCVSLVNGLLGEALGRLYVRKYFPPEAKARVEELVENLKKAF 321

Query: 144 YKYLSTVDWMDPNTRLAAQDKVKAIIPYVAYPQELLGEYLYNKVQELVYDE 194
            + L  +DWMD  T+  A +K+ A+   + YP +      Y+K+     D 
Sbjct: 322 RERLENLDWMDEETKKKALEKLDAMTVKIGYPDKWR---DYSKLDIDYDDL 369



 Score =  142 bits (359), Expect = 1e-35
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 36/167 (21%)

Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREK---------- 480
           F  D P  +N+G +G  IGHEITHGFD  G +FD++G   NWW P  R+           
Sbjct: 430 FDPDAPDAVNYGGIGAVIGHEITHGFDDQGRQFDEDGNLRNWWTPEDRKAFEERTQCLVD 489

Query: 481 ----YKILWLLHLP------------------WAA----NRPEEPRLPGLQRFSPRQMFW 514
               Y++   LH+                   + A     + +   LP    F+P Q+F+
Sbjct: 490 QYSNYEVPPGLHVNGKLTLGENIADLGGLRLAYDAYKKWLKGKGAELPPGDGFTPDQLFF 549

Query: 515 VSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFG 561
           +S A  +C   RPE L+  LL D H+P ++R  G L+NS EF   F 
Sbjct: 550 LSFAQVWCSKYRPEALRQLLLTDPHSPGKFRVNGVLSNSPEFAEAFN 596



 Score = 74.3 bits (183), Expect = 8e-14
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)

Query: 563 GSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGSVNGVNTL-------VG 615
           G +FD++G   NWW P  R+ ++ +++C+VDQY  Y VP     VNG  TL        G
Sbjct: 459 GRQFDEDGNLRNWWTPEDRKAFEERTQCLVDQYSNYEVPP-GLHVNGKLTLGENIADLGG 517

Query: 616 LAIA 619
           L +A
Sbjct: 518 LRLA 521



 Score = 58.1 bits (141), Expect = 9e-09
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 357 NPVVKAYLEYMVDIAVMMGASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNLVT 416
             +  AY  Y+  + V+ G   E A+      L FE+ L  I+ S EE R   K  N +T
Sbjct: 126 KKIRAAYKAYLAKLLVLAGEDEEDAEALAEEVLAFETELAKISWSEEERRDPEKTYNPMT 185

Query: 417 ISHLEHKYPIL 427
           ++ L+   P +
Sbjct: 186 LAELQKLAPGI 196


>gnl|CDD|218676 pfam05649, Peptidase_M13_N, Peptidase family M13.  M13 peptidases
           are well-studied proteases found in a wide range of
           organisms including mammals and bacteria. In mammals
           they participate in processes such as cardiovascular
           development, blood-pressure regulation, nervous control
           of respiration, and regulation of the function of
           neuropeptides in the central nervous system. In bacteria
           they may be used for digestion of milk.
          Length = 380

 Score =  147 bits (372), Expect = 7e-39
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 25  LSHLSPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRY 84
           LS L   K  + V +  PD+ ++   LL  TP   L NYL+W+++   + YL+EE  +  
Sbjct: 228 LSALGLPKDPDEVIVSQPDYLKALNKLLAETPLETLKNYLIWKLIDSFAPYLSEEFRDAN 287

Query: 85  FKFSS-TLRGVTARKPRWQECVDETKD-LDIAVGALYIRKYFNQDAKANVETMVRLILDE 142
           F+F   TL G   ++PRW+ CV      L  A+G LY+ KYF  +AKA+VE MV+ I   
Sbjct: 288 FEFYGKTLSGTKEQRPRWKRCVSLVNGLLGEALGRLYVEKYFPPEAKADVEEMVKNIKKA 347

Query: 143 TYKYLSTVDWMDPNTRLAAQDKVKAIIPYVAYP 175
             + L  +DWM   T+  A +K+ A+   + YP
Sbjct: 348 FRERLEELDWMSEETKKKALEKLDAMTVKIGYP 380



 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 358 PVVKAYLEYMVDIAVMMGASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNLVTI 417
            + +AY +Y+  +  + G   + A++     + FE++L   + S EE R  +KL N +T+
Sbjct: 153 KIREAYKKYIAKLLKLAGLDEDEAEKAAEDVVAFETKLAKASWSREELRDPAKLYNPMTL 212

Query: 418 SHLEHKYPIL 427
           + L+   P L
Sbjct: 213 AELQALAPGL 222


>gnl|CDD|218716 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH).  This family is
           made up of several eukaryotic phytanoyl-CoA dioxygenase
           (PhyH) proteins, ectoine hydroxylases and a number of
           bacterial deoxygenases. PhyH is a peroxisomal enzyme
           catalyzing the first step of phytanic acid
           alpha-oxidation. PhyH deficiency causes Refsum's disease
           (RD) which is an inherited neurological syndrome
           biochemically characterized by the accumulation of
           phytanic acid in plasma and tissues.
          Length = 213

 Score =  111 bits (278), Expect = 8e-28
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 202 HKKLLDYVESFIGP-------HIRAIHSMLINKPPDAGTQTSRHPLHQDLHYFPHRPAHR 254
              L D   + +G               + I K P  G +    P HQD  + P RPA  
Sbjct: 68  PFYLADLARAILGSPVYVALGLQSMYQDLSIFKQPGTGGEV--SPWHQDYTFLPTRPAEL 125

Query: 255 IVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEGGVNAMYHGIRGFDSHDKLN 314
           +V  W A++   ++NGCL  +P +H+     L    P   G +N        +D    + 
Sbjct: 126 VVNVWIALDDATEENGCLRFIPGSHKWEVGDLTRRLPYDPGHLN--DDEAPKYDEEPAVP 183

Query: 315 LYMERGDTVFFHPLLIHGSGTNVTKA 340
           + M+ GD V FHP L+HGSG N +  
Sbjct: 184 VPMKAGDAVLFHPRLLHGSGANRSDK 209


>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 654

 Score = 96.7 bits (241), Expect = 7e-21
 Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 6/147 (4%)

Query: 33  PDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKF-SSTL 91
           PD+V+ +E P + + F  LL          +L W+++  ++ YLTE++ + +F F   TL
Sbjct: 256 PDKVIVVENPFYLKEFASLLAEENWADWKAWLRWKLIRAAAPYLTEDLVDEHFDFYGRTL 315

Query: 92  RGVTARKPRWQECVDETKDL-DIAVGALYIRKYFNQDAKANVETMV-RLILDETYK-YLS 148
            G    + RW+  V+  + L   A+G LY+++YF  +AKA++E +V  LI  + YK  +S
Sbjct: 316 SGQPEARDRWKRAVNLAERLFGEAIGLLYVKRYFPPEAKADMEELVANLI--KAYKARIS 373

Query: 149 TVDWMDPNTRLAAQDKVKAIIPYVAYP 175
            +DWM P TR  A +K+      + YP
Sbjct: 374 KLDWMTPETREKALEKLNKFTAKIGYP 400



 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 32/162 (19%)

Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKY--------- 481
           F  +  S  N+G +G  IGHEI HGFD  G++FD +G   +WW       +         
Sbjct: 474 FDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDWWTDEDAAAFKERTKKLVA 533

Query: 482 --------------KILWL---------LHLPWAANRPEEPRLPGLQRFSPRQMFWVSAA 518
                           L +         L +   A +      P +  F+  Q F+++ A
Sbjct: 534 QFDGYEPEGGKDNGNALTVGENIADLGGLAIALDAYKLSLDPAPVIDGFTGLQRFFLNWA 593

Query: 519 TSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDF 560
             +    RPE+ +  L  D H+P E+R  G + N  EF   F
Sbjct: 594 QIWRMKARPEEQQMRLSVDPHSPAEFRVNGPVRNMDEFYEAF 635



 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 555 EFGRDFGT-GSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGSVNGVNT- 612
           E G  F   G++FD +G   +WW       +K ++K +V Q+  Y  PE         T 
Sbjct: 494 EIGHGFDDQGAKFDGDGNLNDWWTDEDAAAFKERTKKLVAQFDGY-EPEGGKDNGNALTV 552

Query: 613 ------LVGLAIAI 620
                 L GLAIA+
Sbjct: 553 GENIADLGGLAIAL 566


>gnl|CDD|216499 pfam01431, Peptidase_M13, Peptidase family M13.  Mammalian enzymes
           are typically type-II membrane anchored enzymes which
           are known, or believed to activate or inactivate
           oligopeptide (pro)-hormones such as opioid peptides. The
           family also contains a bacterial member believed to be
           involved with milk protein cleavage.
          Length = 206

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 39/177 (22%)

Query: 424 YPILGTSFSND-RPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKYK 482
             IL   F ND  P  +N+G +G+ +GHEI HGFD  G +FDK+G    WW      ++K
Sbjct: 15  AGILVPPFFNDLYPPAVNYGGIGFVLGHEIMHGFDDQGIQFDKDGNLCGWWTDEDEAEFK 74

Query: 483 ILWL-----------------------------------LHLPWAA---NRPEEPRLPGL 504
                                                  L +   A       E RLPGL
Sbjct: 75  DAAQCLIDQYDEYGDPDAVKPDCWNGATTFGENIADLGGLRIALKAYAKKSANEQRLPGL 134

Query: 505 QRFSPRQMFWVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFG 561
           +  +P Q+F+ + A S+C   RP++    LL D H+P E R  G++ N   F   F 
Sbjct: 135 ENLTPDQLFFETYAQSWCRKSRPKNSLTQLLVDPHSPLELRVNGAVRNMPAFYSAFN 191



 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 563 GSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVP--EVNGSVNGVNT-------L 613
           G +FDK+G    WW      ++K  ++C++DQY +Y  P        NG  T       L
Sbjct: 52  GIQFDKDGNLCGWWTDEDEAEFKDAAQCLIDQYDEYGDPDAVKPDCWNGATTFGENIADL 111

Query: 614 VGLAIAIAIAS 624
            GL IA+   +
Sbjct: 112 GGLRIALKAYA 122


>gnl|CDD|227609 COG5285, COG5285, Protein involved in biosynthesis of mitomycin
           antibiotics/polyketide fumonisin [Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 299

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 221 HSMLINKPPDAGTQ-TSRHPLHQDLHYF-PHRPAHRIVAAWTAMERIDKDNGCLFVLPRT 278
           H  ++ K P            HQD     P  PA   V AW A+    +DNG   V+P +
Sbjct: 115 HGHVLWKMPGFQKPGAVATRWHQDYPLVSPGYPAL--VNAWIALCDFTEDNGATLVVPGS 172

Query: 279 HR-DPGSLLQHEYPEWEGGVNAMYHGIRGFDSHDKLNLYMERGDTVFFHPLLIHGSGTNV 337
           H+ D         PE              +   + + + +E+GD + F+  L H +G N 
Sbjct: 173 HKWDVI-------PERPDHET--------YLERNAVPVELEKGDALLFNGSLWHAAGANR 217

Query: 338 TKA 340
           T A
Sbjct: 218 TSA 220


>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein.  The Polycystin
            Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
            huge protein of 4303aas. Its repeated leucine-rich (LRR)
            segment is found in many proteins. It contains 16
            polycystic kidney disease (PKD) domains, one LDL-receptor
            class A domain, one C-type lectin family domain, and
            16-18 putative TMSs in positions between residues 2200
            and 4100. Polycystin-L has been shown to be a cation
            (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two
            members of the PCC family (polycystin 1 and 2) are
            mutated in autosomal dominant polycystic kidney disease,
            and polycystin-L is deleted in mice with renal and
            retinal defects. Note: this model is restricted to the
            amino half for technical reasons.
          Length = 2740

 Score = 37.0 bits (85), Expect = 0.038
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 418  SHLEHKYPILGTSFSNDRP-SYM-NFGSMGWTIGHEITHGFDSTG 460
            ++LE   P L ++F   R  SY+ +FG  G   G EI H F+S G
Sbjct: 1440 NNLELGQPYLFSAFGRARNASYLWDFGDGGLLEGPEILHAFNSPG 1484


>gnl|CDD|130823 TIGR01762, chlorin-enz, chlorinating enzyme.  This model represents
           a a group of highly homologous enzymes related to
           dioxygenases which chlorinate amino acid methyl groups.
           BarB1 and BarB2 are proposed to trichlorinate one of the
           methyl groups of a leucine residue in the biosynthesis
           of barbamide in the cyanobacterium Lyngbya majuscula.
           SyrB2 is proposed to chlorinate the methyl group of
           threonine in the biosynthesis of syringomycin in
           Pseudomonas syringae. CmaB is proposed to chlorinate the
           beta-methyl group of alloisoleucine in the process of
           ring closure in the biosynthesis of coronamic acid, a
           component of coronatine also in Pseudomonas syringae.
          Length = 288

 Score = 34.5 bits (79), Expect = 0.15
 Identities = 44/207 (21%), Positives = 67/207 (32%), Gaps = 52/207 (25%)

Query: 193 DEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINK-PPDAGTQTSRHPLHQ--------- 242
           D+    +    ++   VES +GP++    +    K P D GT       HQ         
Sbjct: 64  DDFLASHICRPEICHRVESILGPNVLCWRTEFFPKYPGDEGTD-----WHQADTFANASG 118

Query: 243 --DLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEG----- 295
              L +  +      +  WTA      +NGC+  +P TH          Y E        
Sbjct: 119 KPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHN------SMNYDETRRMTFEP 172

Query: 296 -GVNAMYHG--IRGFDSHD----------------KLNLYMERGDTVFFHPLLIHGSGTN 336
              N++  G   RGF  +D                 + + M+ G  + F   L+H S  N
Sbjct: 173 DANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWSTLMHASYPN 232

Query: 337 VTKAVLGTSQRSAGRTQRLANPVVKAY 363
             +     SQ   G   R     V  Y
Sbjct: 233 SGE-----SQMRMGFASRYVPSFVHVY 254


>gnl|CDD|131461 TIGR02408, ectoine_ThpD, ectoine hydroxylase.  Both ectoine and
           hydroxyectoine are compatible solvents that serve as
           protectants against osmotic and thermal stresses. A
           number of genomes synthesize ectoine. This enzyme allows
           conversion of ectoine to hydroxyectoine, which may be
           more effective for some purposes, and is found in a
           subset of ectoine-producing organisms.
          Length = 277

 Score = 33.3 bits (76), Expect = 0.34
 Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 25/136 (18%)

Query: 220 IHSMLIN-KPPDAGTQTSRHPLHQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRT 278
           +H   IN KP   GT    H   +  H     P+ R V+   A+   ++ NG L ++P +
Sbjct: 109 VHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGS 168

Query: 279 HRD-------------PGSLLQHEY--PEWEGGVNAM-YHGIRGFDSHDKLNLYMERGDT 322
           HR                SL + EY  P+           GI  F          + G  
Sbjct: 169 HRTFISCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTG--------KAGSA 220

Query: 323 VFFHPLLIHGSGTNVT 338
           V+F    +HGSG+N+T
Sbjct: 221 VWFDCNTMHGSGSNIT 236


>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
          Length = 480

 Score = 30.4 bits (69), Expect = 3.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 441 FGSMGWTIG---HEITHGFDSTGSRF 463
           FGSMG+       EI  G + +G RF
Sbjct: 279 FGSMGFFDAPQVREIAAGLERSGHRF 304


>gnl|CDD|152533 pfam12098, DUF3574, Protein of unknown function (DUF3574).  This
           family of proteins is functionally uncharacterized. This
           protein is found in bacteria and viruses. Proteins in
           this family are typically between 144 to 163 amino acids
           in length. This protein has a conserved TPRF sequence
           motif.
          Length = 104

 Score = 28.0 bits (63), Expect = 5.7
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 451 EITHGFDSTGSRFDKNGTEINWWDPST----REKYKILWLLHLPWAANRP--EEPRLPGL 504
           E+T  F    + FD  G    W D +T    RE  K++ ++H    A R   E  R    
Sbjct: 29  EVTPRFPDGLTVFDAYG---QWRDRATGRIVRENSKVVIIVHPDTPAKRADIEAIREAYK 85

Query: 505 QRFSPRQMFWVSAAT 519
           QRF  + +  V    
Sbjct: 86  QRFHQQSVLRVDQPV 100


>gnl|CDD|224749 COG1836, COG1836, Predicted membrane protein [Function unknown].
          Length = 247

 Score = 28.8 bits (65), Expect = 7.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 604 NGSVNGVNTLVGLAIAIAIA 623
           N  VN + T +G  I I I 
Sbjct: 224 NEGVNFLATFLGAIIGILIF 243


>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
          Length = 773

 Score = 29.1 bits (66), Expect = 9.1
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 359 VVKAYLEYMVDIAVMMGASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNLV 415
            ++ YLE + + A   G S+  A + L    +F   +R   + + E+ K+ KL  +V
Sbjct: 302 ALRRYLERLREEARSSGGSK--ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIV 356


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,625,974
Number of extensions: 3204378
Number of successful extensions: 2749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2735
Number of HSP's successfully gapped: 33
Length of query: 625
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 522
Effective length of database: 6,369,140
Effective search space: 3324691080
Effective search space used: 3324691080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)