RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2275
(625 letters)
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded
beta-helix, structural GENO structural genomics
consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo
sapiens} SCOP: b.82.2.9
Length = 308
Score = 177 bits (451), Expect = 5e-51
Identities = 93/161 (57%), Positives = 120/161 (74%), Gaps = 3/161 (1%)
Query: 180 GEYLYNKVQELVYDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHP 239
E + KVQ+ D+ +Y ++L YVE F GP+I A+H+MLINKPPD+G +TSRHP
Sbjct: 84 SEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHP 143
Query: 240 LHQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEGGVNA 299
LHQDLHYFP RP+ IV AWTAME I ++NGCL VLP TH+ L H+YP+WEGGVN
Sbjct: 144 LHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGS--LKPHDYPKWEGGVNK 201
Query: 300 MYHGIRGFD-SHDKLNLYMERGDTVFFHPLLIHGSGTNVTK 339
M+HGI+ ++ + +++L ME+GDTVFFHPLLIHGSG N T+
Sbjct: 202 MFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQ 242
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 167 bits (425), Expect = 3e-44
Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 30 PVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKFSS 89
+ +E V + AP++ +P+L R L N + W+ + + L+ F
Sbjct: 283 SITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRK 342
Query: 90 TLRGVTARKPRWQECVDETKD-LDIAVGALYIRKYFNQDAKANVETMVRLILDETYKYLS 148
L G T+ W+ C + ++ AVG LY+ F ++K VE ++ I + + L
Sbjct: 343 ALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLD 402
Query: 149 TVDWMDPNTRLAAQDKVKAIIPYVAYPQELLGEYLYNKVQELVYDEVFEKYTMHKKLLDY 208
+ WMD T+ A++K AI + YP +++ + + + + + +Y
Sbjct: 403 DLTWMDAETKKRAEEKALAIKERIGYPDDIVSN-------DNKLNNEYLELNYKED--EY 453
Query: 209 VESFIGPHIRAIHSML--INKPPD 230
E+ I + L + + D
Sbjct: 454 FENIIQNLKFSQSKQLKKLREKVD 477
Score = 149 bits (379), Expect = 3e-38
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 41/171 (23%)
Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKYK-------- 482
FS + + +N+G +G IGHEITHGFD G F+K+G ++WW + +K
Sbjct: 511 FSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVY 570
Query: 483 --------ILWLLHL------------------------PWAANRPEEPRLPGLQRFSPR 510
+ HL + EE LPGL + +
Sbjct: 571 QYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLD-LNHK 629
Query: 511 QMFWVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFG 561
Q+F+++ A +CG RPE +++ D H+P +R +G+L NS EF F
Sbjct: 630 QLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFH 680
Score = 75.9 bits (187), Expect = 1e-14
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 562 TGSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGS-VNGVNTL 613
G F+K+G +WW + +K +S+CMV QYG + G +NG+NTL
Sbjct: 539 NGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTL 591
Score = 57.1 bits (138), Expect = 1e-08
Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 357 NPVVKAYLEYMVDIAVMM------GASRETAQQELTASLQFESRLRNITKSNEEYRKMSK 410
AY+++M+ +A ++ E+ ++ E + N T E+
Sbjct: 185 KEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPML 244
Query: 411 LSNLVTISHLEHKYPILGTSFSNDRPSYMN 440
L N +T++ +++ + + ++ N
Sbjct: 245 LYNKMTLAQIQNNFSLEINGKPFSWLNFTN 274
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 159 bits (405), Expect = 9e-42
Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 30 PVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKFSS 89
+ E + + ++ L+ T + +L NY++W ++ +S++L + + KF
Sbjct: 260 EINESEPIVVYDKEYLEQISTLINTTDRCLLNNYMIWNLVRKTSSFLDQRFQDADEKFME 319
Query: 90 TLRGVT-ARKPRWQECVDETKD-LDIAVGALYIRKYFNQDAKANVETMVRLILDETYKYL 147
+ G PRW+ CV +T++ L A+G ++++ F +D+K+ ++ I + L
Sbjct: 320 VMYGTKKTSLPRWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESL 379
Query: 148 STVDWMDPNTRLAAQDKVKAIIPYVAYPQELL 179
ST+ WMD TR +A++K AI + YP ++
Sbjct: 380 STLKWMDEETRKSAKEKADAIYNMIGYPNFIM 411
Score = 138 bits (349), Expect = 2e-34
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 38/168 (22%)
Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKY--------- 481
++ P +NFG +G +GHE+TH FD G +DK+G WW S+ E +
Sbjct: 488 YTRSSPKALNFGGIGVVVGHELTHAFDDQGREYDKDGNLRPWWKNSSVEAFKRQTECMVE 547
Query: 482 ----------------------------KILWLLHLPWAANRPEEPRLPGLQRFSPRQMF 513
K + + W E LP L + Q+F
Sbjct: 548 QYSNYSVNGEPVNGRHTLGENIADNGGLKAAYRAYQNWVKKNGAEHSLPTLG-LTNNQLF 606
Query: 514 WVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFG 561
++ A +C ++ PE + L+ D H+P +R +GSL+NS EF F
Sbjct: 607 FLGFAQVWCSVRTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFR 654
Score = 74.0 bits (182), Expect = 7e-14
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 562 TGSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGSVNGVNTL-------V 614
G +DK+G WW S+ E +K +++CMV+QY Y V VNG +TL
Sbjct: 516 QGREYDKDGNLRPWWKNSSVEAFKRQTECMVEQYSNYSVNGEP--VNGRHTLGENIADNG 573
Query: 615 GLAIA 619
GL A
Sbjct: 574 GLKAA 578
Score = 58.6 bits (142), Expect = 4e-09
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 356 ANPVVKAYLEYMVDIAVMMGAS-RETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNL 414
V+ YL YMV + ++G E + ++ L FE+ L NIT E+ R + +
Sbjct: 174 NEKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETALANITIPQEKRRDEELIYHK 233
Query: 415 VTISHLEHKYP 425
VT + L+ P
Sbjct: 234 VTAAELQTLAP 244
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A
{Virgibacillus salexigens}
Length = 310
Score = 152 bits (385), Expect = 1e-41
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 192 YDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHPLHQDLHYFPHRP 251
D F+ K++LD V +G + S + KP G + H + H P
Sbjct: 100 DDNYFQDVANDKRILDIVRHLLGSDVYVHQSRINYKPGFKGKEFDWHSDFETWHVEDGMP 159
Query: 252 AHRIVAAWTAMERIDKDNGCLFVLPRTHRDP-GSLLQHEYPEWEGGVNAMYHGIRGFDSH 310
R ++ A+ NG L ++P +H + + ++ + G+ +S
Sbjct: 160 RMRAISVSIALSDNYSFNGPLMLIPGSHNYFVSCVGETPDNNYKESLKKQKLGVPDEESL 219
Query: 311 DKLNLY--------MERGDTVFFHPLLIHGSGTNVT 338
+L + G F +HGS +N+T
Sbjct: 220 RELTRIGGGISVPTGKAGSVTLFESNTMHGSTSNIT 255
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 156 bits (396), Expect = 2e-40
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Query: 29 SPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKF- 87
S + + PD+ +F L + + W+++ + +LT + F+F
Sbjct: 288 SAPDAMTELVVRQPDYLVTFASLWASVNVEDWKCWARWRLIRARAPWLTRALVAEDFEFY 347
Query: 88 SSTLRGVTARKPRWQECVDETKD-LDIAVGALYIRKYFNQDAKANVETMVRLILDETYKY 146
TL G + RW+ V ++ + AVG LY++++F DAK+ ++T+V + +
Sbjct: 348 GRTLTGAQQLRDRWKRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRIS 407
Query: 147 LSTVDWMDPNTRLAAQDKVKAIIPYVAYPQELL 179
+S +DWM P TR A K+ V YP +
Sbjct: 408 ISELDWMTPQTRQRALAKLNKFTAKVGYPIKWR 440
Score = 133 bits (336), Expect = 9e-33
Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 40/171 (23%)
Query: 431 FSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREK---------- 480
F N+G +G IGHEI HGFD G+++D +G ++WW R +
Sbjct: 510 FDPQADEAANYGGIGAVIGHEIGHGFDDQGAKYDGDGNLVDWWTDDDRTEFAARTKALIE 569
Query: 481 ----YKILWLLHLPWAAN--------------------------RPEEPRLPGLQRFSPR 510
Y L+ P + P + +
Sbjct: 570 QYHAYTPRDLVDHPGPPHVQGAFTIGENIGDLGGLSIALLAYQLSLNGNPAPVIDGLTGM 629
Query: 511 QMFWVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFG 561
Q + A + R + L D H+PPE+R G + N F + F
Sbjct: 630 QRVFFGWAQIWRTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFD 680
Score = 70.5 bits (173), Expect = 7e-13
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 563 GSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGS-----VNGVNTLV--- 614
G+++D +G +WW R ++ ++K +++QY Y ++ V G T+
Sbjct: 539 GAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPHVQGAFTIGENI 598
Query: 615 ----GLAIA 619
GL+IA
Sbjct: 599 GDLGGLSIA 607
Score = 58.9 bits (143), Expect = 3e-09
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 358 PVVKAYLEYMVDIAVMM-GASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNLVT 416
V+ AY ++ + ++ G + + E++L + + R NL T
Sbjct: 207 AVLAAYPGHIARMFGLVYGGESRDHAKTADRIVALETKLADAHWDVVKRRDADLGYNLRT 266
Query: 417 ISHLEHKYP 425
+ L+ +
Sbjct: 267 FAQLQTEGA 275
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate
dependent hydroxylase...; double stranded barrel helix,
dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis}
PDB: 2rdn_A* 2rdr_A* 2rds_A*
Length = 288
Score = 140 bits (355), Expect = 8e-38
Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 36/233 (15%)
Query: 116 GALYIRKYFNQDAKANVETMVRLILDETYKYLSTVDWMDPNTRLAAQDKVKAIIPYVAYP 175
G L++R ++D V+ + ++ + L + DP+ A
Sbjct: 32 GYLFLRNVLDRDL-------VKTVAEQMREGLVALGAADPH----------------ATL 68
Query: 176 QELLGEYLYNKVQELVYDE-VFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQ 234
+EL + + + ++D ++ + + + E G + S I P
Sbjct: 69 EELTIDSFESVDEVAMHDYVKYDAFWNNPSTIKVFEQVFGEPVFVFLSTTIRYYPSQAGS 128
Query: 235 -----TSRHPLHQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHE 289
P HQD Y P W + R +++G + + +HR H
Sbjct: 129 EEPSFHYLTPFHQDGFYIG--PNQDFRTFWIPLIRTTRESGGVALADGSHRRG--KRDHV 184
Query: 290 YPEWEGGVNAMYHGIR---GFDSHDKLNLYMERGDTVFFHPLLIHGSGTNVTK 339
E GI + L+ ME GD + FH + H S N++K
Sbjct: 185 LNESFRRFGHPVRGIPPTEVSEDEHLLHSPMEPGDILLFHAHMCHKSIPNLSK 237
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural
GE structural genomics consortium, SGC, oxidoreductase;
1.90A {Homo sapiens} PDB: 3obz_A*
Length = 291
Score = 130 bits (327), Expect = 6e-34
Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 13/227 (5%)
Query: 120 IRKYFNQDAKANVETMVRLILDETYKYLSTVDWMDPNTRLAAQDKVKAIIPYVAYPQELL 179
+++ + + T + + L++ DK++ + ++
Sbjct: 32 MQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGN 91
Query: 180 ----GEYLYNKVQELVY--DEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGT 233
E NK+ ++ D VF+ T K+ S + SM I K P G
Sbjct: 92 FLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGG 151
Query: 234 QTSRHPLHQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEW 293
+ HQD + P R++ W A+E +NGCL+ +P +H + +
Sbjct: 152 EV---SPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSG--VSRRMVRAP 206
Query: 294 EGGV-NAMYHGIRGFDSHDKL-NLYMERGDTVFFHPLLIHGSGTNVT 338
G + G + ++RG V H ++H S N++
Sbjct: 207 VGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLS 253
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin,
halogenase, biosynthetic protein; HET: DSU AKG; 1.60A
{Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A*
2fcv_A*
Length = 313
Score = 113 bits (284), Expect = 6e-28
Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 37/191 (19%)
Query: 180 GEYLYNKVQELVYDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHP 239
G + D+ + ++ D VES +GP++ + K P
Sbjct: 62 GGTNIANYDRHLDDDFLASHICRPEICDRVESILGPNVLCWRTEFFPKYPGDEGT----D 117
Query: 240 LHQDLHYFPH-----------RPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQH 288
HQ + + WTA + NGCL +P T
Sbjct: 118 WHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPGTQNSM--NYDE 175
Query: 289 EYPEWE----------GGVNAMYHGIR----------GFDSHDKLNLYMERGDTVFFHPL 328
GV + G D + + M+ G + F
Sbjct: 176 TKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWST 235
Query: 329 LIHGSGTNVTK 339
L+H S + +
Sbjct: 236 LMHASYPHSGE 246
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A
{Streptomyces} PDB: 3gjb_A*
Length = 319
Score = 113 bits (284), Expect = 7e-28
Identities = 37/254 (14%), Positives = 73/254 (28%), Gaps = 46/254 (18%)
Query: 146 YLSTVDWMDPNTRLAAQDKVKAII--PYVAYPQELLGEYLYNKVQELVYDEVFEKYTMHK 203
Y+ V +P + ++ + +A + G+ + + ++ ++ M
Sbjct: 25 YIGPVKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIMRP 84
Query: 204 KLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHPLHQDLHYFPHRP------------ 251
+++D V S IG ++ S K HQ +
Sbjct: 85 EIVDRVGSLIGRNLLCWRSEFFPKYQGDE----GTDWHQAATFAHATGKPQIIWPSDEGR 140
Query: 252 --AHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPE-------WEGGVNAMYH 302
+ WTA + NGCL ++P TH + + +
Sbjct: 141 PAFIGTITVWTAFTHSTEQNGCLQLMPGTHTSM--NYDESKGMDYDADAINQREKDGIKR 198
Query: 303 GIRG-------------FDSHDKLNLYMERGDTVFFHPLLIHGSGTNVTKAVLGTSQRSA 349
G G D + ++ G+ V F +H S + +
Sbjct: 199 GFFGYDYRSLQKDPDWKPDESQAYPMVLKPGEAVIFWSNTMHASLPHTGS----KTDYRM 254
Query: 350 GRTQRLANPVVKAY 363
G R V+ Y
Sbjct: 255 GFAARYVPTQVQVY 268
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal
cryptic chlorination, biosynthetic protein; HET: AKG;
2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Length = 344
Score = 80.0 bits (196), Expect = 2e-16
Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 28/212 (13%)
Query: 151 DWMDPNTRLAAQDKVKAIIPYVAYPQEL-LGEYLYNKVQELVYDEVFEKYTMHKKLLDYV 209
+ + Q K ++ I +L + + + + ++ L +
Sbjct: 52 SAIKTIQKTLDQAKQESQISKEKVTLKLGGIDDIDTNDHAYDLVKYDFVSSFIQEKLALL 111
Query: 210 ESFIGPHIRAIHSMLINKPPDAGTQTSRHPLHQDLHYFPH-RPAHRIVAAWTAMERIDKD 268
G ++ +H+ L + P+ P H + F + + W +++I K+
Sbjct: 112 NYITGKNLMIMHNALFSVEPN----HKGLPWHVGVGSFSFTKTEDFGASIWIPLDKITKE 167
Query: 269 NGCLFVLPRTHRDPG----------SLLQHEYPEWEGGVNAMYHGIRGFDS--------- 309
+ T PG ++ E +G +N +
Sbjct: 168 HRGGMQYVSTKIFPGQFYYSVFDLHLKNNIKWDESQGDLNEYVANANTIYNKITEDVIDY 227
Query: 310 ---HDKLNLYMERGDTVFFHPLLIHGSGTNVT 338
GD FF+ ++H S
Sbjct: 228 TIKDGYEEDEYNLGDAFFFNKYVLHQSVPLKP 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 3e-08
Identities = 71/449 (15%), Positives = 129/449 (28%), Gaps = 167/449 (37%)
Query: 154 DPNTRLAAQDKVKAIIPYVAYPQELLGEYL-Y--NKVQELV---YDEVFEKYTMHKKLLD 207
+P AA D+ P EL+G++L Y + V+ +D+V L
Sbjct: 43 EPTEGFAADDEPTT-------PAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLT 89
Query: 208 YVES-FIGPHIRAIHSMLINKPPDAGTQTSRHPLHQDL--HYFPHRPAHRIVAAWTAMER 264
E+ ++ IH++ + T + ++L +Y A +R
Sbjct: 90 EFENCYLEG--NDIHALAAKLLQENDTTLVK---TKELIKNYI---------TARIMAKR 135
Query: 265 IDKDNGCLFVLPRTHRDPGSLLQHE-------YPEWEG-GVNAMYHGIRGFDSHDKL-NL 315
P + +L + + G G Y F ++L +L
Sbjct: 136 -----------PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-----F---EELRDL 176
Query: 316 YMERGDTVFFHPLLIHGSGTNVTKAVLGTSQRSAGRTQRLANPVVKAYLEYMVDIAVMMG 375
Y T +H L+ ++ + SA L
Sbjct: 177 Y----QT--YHVLV---------GDLI---KFSAETLSELI------------------- 199
Query: 376 ASRETAQQELTASLQFESRLRN-ITKSNEEYRKMSKLSNLVTISHLEHKYPILG-TSFSN 433
+ A++ T L L N +++Y L + + IS P++G ++
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDY-----LLS-IPIS-----CPLIGVIQLAH 248
Query: 434 DRPSYMNFG-SMGWTIGH-------EITHGFD----------STGSRFDKNGTEINWWDP 475
Y+ +G+T G H + F + +
Sbjct: 249 ----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA----- 299
Query: 476 STREKYKILWLLHLPWAANR--PEEPRLPGLQRFS-------PRQMFWVSAATSYCGLQR 526
I L + P P + S P M +S L +
Sbjct: 300 -------ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS------NLTQ 346
Query: 527 PEDLKDNL--LNDEHTPPEWRAVGSLANS 553
E ++D + N H P + SL N
Sbjct: 347 -EQVQDYVNKTN-SHLPAGKQVEISLVNG 373
Score = 50.4 bits (120), Expect = 2e-06
Identities = 86/559 (15%), Positives = 154/559 (27%), Gaps = 201/559 (35%)
Query: 14 ELAGRGLDKPDLSHLSPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSS 73
EL G+ L ++S +L P F+ +L L + F +
Sbjct: 59 ELVGKFL-----GYVS--------SLVEPSKVGQFDQVLNL---------CLTE---FEN 93
Query: 74 TYLTEEMNNRYFKFSSTLRGVTARKPRWQECVDETKDLDIAVGALYIRKYFNQDAKANVE 133
YL N+ + + A+ + + D + I+ Y A
Sbjct: 94 CYLEG--ND--------IHALAAK-------LLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 134 TMVRLILDETYKYLSTVDWMDPNTRL--AAQDKVKAIIPYVAYP-QELLGEYLYNKVQEL 190
+ N+ L A + A + + Q +Y +EL
Sbjct: 137 FDKK-----------------SNSALFRAVGEG-NAQL-VAIFGGQGNTDDYF----EEL 173
Query: 191 VYDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLIN---KPPDAG-------------TQ 234
++++ Y +G I+ L DA
Sbjct: 174 R--DLYQTY----------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 235 TSRHP----------------LHQDLHYF---------P--HRPAHR--------IVAA- 258
S P + Q HY P R + +V A
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 259 -------WTAMERIDKDN-GCLF--------VLPRTHRDPGSLLQHEYPEWEGGVNAMYH 302
W + + LF P T P S+L+ EG + M
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLENNEGVPSPML- 339
Query: 303 GIRGFD-----SH-DKLNLYMERGDTVF---------F----HPLLIHGSGTNV--TKAV 341
I + +K N ++ G V P ++G + KA
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 342 LGTSQRSAGRTQRLANPVVKAYL--------EYMVDIAVMMGASRETAQQELTASLQFE- 392
G Q ++R + +L +V AS + + ++ F
Sbjct: 400 SGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVP------ASDLINKDLVKNNVSFNA 452
Query: 393 SRLRNI----TKSNEEYRKMSK--LSNLV-TISHLEHKYPILGTSFSNDRPSYM-NFGSM 444
++ I T + R +S +V I L P+ + + + +++ +FG
Sbjct: 453 KDIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRL----PVKWETTTQFKATHILDFGPG 507
Query: 445 GWT-IGHEITHGFDSTGSR 462
G + +G D TG R
Sbjct: 508 GASGLGVLTHRNKDGTGVR 526
Score = 41.2 bits (96), Expect = 0.001
Identities = 73/425 (17%), Positives = 126/425 (29%), Gaps = 157/425 (36%)
Query: 3 FVRRAFAGRKNELA----------GRGLDKPD-LSHLSPVKPDEVVNLEAPDFFRSFEPL 51
++ + A +EL +GL+ + L + S PD+ L P S PL
Sbjct: 187 LIKFS-AETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLSIP---ISC-PL 240
Query: 52 LKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKFSSTLRGVTARKPRWQECVDETKDL 111
+ LA+Y+ V + + E+ + L+G T ++ L
Sbjct: 241 IGVIQ---LAHYV---VTAKLLGFTPGELRSY-------LKGATGH----------SQGL 277
Query: 112 DIAVGALYIRKYFNQDAKAN-VETMVRLILDETYKYLSTVDWMDPNTRLAAQDKVKAIIP 170
V A+ I A+ + E+ + K ++ + ++ + + P
Sbjct: 278 ---VTAVAI-------AETDSWESFFVSVR----KAITVLFFIG----VRCYEAY----P 315
Query: 171 YVAYPQELLGEYLYNK---------VQELVYDEVFEKYTMHKKLLDYVESFIGPHIRAIH 221
+ P +L + L N + L ++V ++ S + P + +
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-------DYVNKTNSHL-PAGKQVE 367
Query: 222 SMLINK--------PP---------------DAGTQTSRHPLHQDLHYFPHR------PA 252
L+N PP +G SR P + F +R P
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 253 HRIVAAWTAMERIDKD---NGCLF-----VLPRTHRDPGSLLQHEYPE------------ 292
H + A + I+KD N F +P GS L+
Sbjct: 428 HSHLLV-PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 293 ---WEGGVNAMYHGIRGFDSH--DKLNLYMERGDTVFFHPLLIHGSGTNVTKAVLGTSQR 347
WE +H D F P G G + GT R
Sbjct: 487 PVKWETTTQFKA-------THILD-------------FGPGGASGLGVLTHRNKDGTGVR 526
Query: 348 --SAG 350
AG
Sbjct: 527 VIVAG 531
Score = 35.8 bits (82), Expect = 0.048
Identities = 45/284 (15%), Positives = 87/284 (30%), Gaps = 93/284 (32%)
Query: 175 PQELL-------GEYLYNKVQELVYDEVFEKYTMHKKLLDYVE------SFIGPHIRAIH 221
P L G+ + ++++ + + +K+ + +F
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE------ 1722
Query: 222 SMLINKPPDAGTQ-TSRHPLHQDLHYFPHRPAHRI----VAAWTAMERIDKDNGCLFVLP 276
L++ TQ T Q PA + AA+ + K G L
Sbjct: 1723 KGLLSA-----TQFT------Q--------PA--LTLMEKAAFEDL----KSKG-LIPAD 1756
Query: 277 RT---HRDPGSLLQHEYPEWEGGVNAMYH--GIRGFDSHDKLNLYMERGDTVFFHPLLIH 331
T H SL EY A+ + + + + RG T+
Sbjct: 1757 ATFAGH----SL--GEY-------AALASLADVMSIE--SLVEVVFYRGMTMQVAVPRDE 1801
Query: 332 GSGTNVTKAVLGTSQRSAGRTQRLANPVVKAYLE---YMVDIA---------VMMGASRE 379
+N + + +A +Q VV+ + ++V+I V G R
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR- 1860
Query: 380 TAQQELTASLQFESRLRNITKSNEEYRKMSKLSNLVTISHLEHK 423
A +T L F +L+ I + +L +++ +E
Sbjct: 1861 -ALDTVTNVLNF-IKLQKI--------DIIELQKSLSLEEVEGH 1894
Score = 31.2 bits (70), Expect = 1.4
Identities = 60/339 (17%), Positives = 90/339 (26%), Gaps = 100/339 (29%)
Query: 327 PLLI-HGSGTNVTKAVLGTSQRSAGRTQRLANPVVKAYLEYMVDIAVMMGASRETAQQEL 385
PL + HGS + VL S +L K E A T EL
Sbjct: 8 PLTLSHGS----LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA---ADDEPTTPAEL 60
Query: 386 TAS-LQFESRLRNITKSNEEYRKMSKLSNLVTISHLEHKYPILGTSFSNDRPSYMNFGSM 444
L + S L ++ ++ L ++ E+ Y L ND
Sbjct: 61 VGKFLGYVSSLVE-PSKVGQFDQVLNLC----LTEFENCY--LE---GND---------- 100
Query: 445 GWTIGHEITHGFD-STGSRFDKNGTEINWWDPSTREKYKILWLLHLPWAANRPEEPRLPG 503
I H + + K I + + P ++ L
Sbjct: 101 ---I-HALAAKLLQENDTTLVKTKELI-------KNYITARIMAKRP--FDKKSNSAL-- 145
Query: 504 LQRFSPRQMFWVSAATS-----Y--CGLQ-RPED----LKDNLLNDEHTPPEWRAVGSLA 551
A G Q +D L+D L + VG L
Sbjct: 146 -----------FRAVGEGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHV----LVGDLI 188
Query: 552 NSV-----EFGRDFGTGSRFDKNGTEFNWW--DPSTR--EKYKVKSK------CMVDQYG 596
E R + G W +PS + Y + ++ Q
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI-QLA 247
Query: 597 KYVV--------P-EVNGSVNGVNTLV-GLAIAIAIASS 625
YVV P E+ + G GL A+AIA +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 1e-07
Identities = 58/464 (12%), Positives = 130/464 (28%), Gaps = 122/464 (26%)
Query: 91 LRGVTARKPRWQECVDETKDLDIAVGALYIRKYFNQDAKANVETMVRLILDETYKYLSTV 150
+ + +++ E D G L + + V+ V +L YK+L +
Sbjct: 42 PKSILSKE----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS- 96
Query: 151 DWMDPNTRLAAQDKVKAIIPYVAYPQELLGEYLYNKVQELVYDEV--FEKYTMHKKLLDY 208
+ + + ++ Y ++ + LYN Q V + Y ++ L
Sbjct: 97 -------PIKTEQRQPSM-MTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 209 VESFIGPHIRAIHSMLINKPPDAGT-------QTSRHPLHQDLHYFPHRPAHRIVAAWTA 261
+ ++ I + G+ Q F W
Sbjct: 147 LRP--AKNV-LIDGV-------LGSGKTWVALDVCLSYKVQCKMDFK--------IFWLN 188
Query: 262 MERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEGGVNAMYHGIRGFDS-HDKLNLYMERG 320
++ + L +L LL P W + + S +L ++
Sbjct: 189 LKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-- 239
Query: 321 DTVFFHPLLI--HGSGTNVTKA------VLGTSQRSAGRTQRLANPVVKAYLEYMVDIAV 372
+ + LL+ + A +L T+ R T L+ + ++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHI--SLDHHSM 296
Query: 373 MMGASRETAQ----------QEL----------TASLQFESRLRNITKSNEEYRKM--SK 410
+ E Q+L S+ +R+ + + ++ + K
Sbjct: 297 TLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDK 354
Query: 411 LSNLVTISHLEHKYPILGTSFSNDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKN---- 466
L+ ++ S L P + R + + F +
Sbjct: 355 LTTIIESS-LNVLEP------AEYRKMFDRLS---------V----------FPPSAHIP 388
Query: 467 -GT-EINWWDPSTREKYKILWLLHLPWAANR-PEEPR--LPGLQ 505
+ W+D + ++ LH + P+E +P +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Score = 46.8 bits (110), Expect = 2e-05
Identities = 55/378 (14%), Positives = 108/378 (28%), Gaps = 109/378 (28%)
Query: 21 DKPDLSHLSPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEM 80
K LS + E +L YL L E+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLD---CRPQD--LPREV 322
Query: 81 ---NNRYFK-FSSTLRGVTARKPRWQ--ECVDETKDLDIAVGAL---YIRKY------FN 125
N R + ++R A W+ C T ++ ++ L RK F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 126 QDAK-----------ANVETMVRLILDETYKYLSTVDWMDPNTRLAAQDKVKAIIPYVAY 174
A +++ V +++++ +KY L + ++ I
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-----------SLVEKQPKESTI----- 426
Query: 175 PQELLGEYLYNKVQELVYDEVFEKYTMHKKLLD-YVESFIGPHIRAIHSMLINKPPDAGT 233
+ YL KV+ +Y +H+ ++D Y P
Sbjct: 427 --SIPSIYLELKVKLE------NEYALHRSIVDHY------------------NIPKTFD 460
Query: 234 QTSRHPLHQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSL---LQHEY 290
P + D +++ H H +E ++ LF D L ++H+
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH-----LKNIEHPERMT--LF--RMVFLDFRFLEQKIRHDS 511
Query: 291 PEWE--GGVNAMYHGIRGFDSH--DKLNLYMERGDTV--FFH---PLLIHGSGTNV---- 337
W G + ++ + + D Y + + F LI T++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 338 ----TKAVLGTSQRSAGR 351
+A+ + + R
Sbjct: 572 LMAEDEAIFEEAHKQVQR 589
Score = 35.6 bits (81), Expect = 0.059
Identities = 35/283 (12%), Positives = 83/283 (29%), Gaps = 72/283 (25%)
Query: 351 RTQRL-------ANPVVKAYLEYMV--DIAVMMGASRETAQQELTASLQFESRLRNITKS 401
T RL +V+ ++E ++ + +M + +Q + + + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 402 NEEYRKMSKLSNLVTISHLEHKYPILGTSFSNDRPSYMNFGSMGWTIGHEITHGFDSTGS 461
N+ + K + V+ K L + RP+ + + G +G
Sbjct: 123 NQVFAKYN-----VSRLQPYLK---LRQALLELRPA-----------KNVLIDGVLGSG- 162
Query: 462 RFDKNGTEINWWDPSTREKYKILWLLHLPWAANRPEEPRLPGLQRFSPRQMFWVSAATSY 521
K W+ A + +Q ++FW++
Sbjct: 163 ---KT------------------WV-----AL---DVCLSYKVQCKMDFKIFWLNLK--N 191
Query: 522 CGLQRPEDLKDNLLNDEHT-PPEWRAVGSLANSVEFGRDFGTG--SRF--DKNGTEF--- 573
C PE + + L + P W + +++++ R K
Sbjct: 192 C--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 574 --NWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGSVNGVNTLV 614
N + + + K ++ K V ++ + +L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Score = 35.2 bits (80), Expect = 0.078
Identities = 73/473 (15%), Positives = 142/473 (30%), Gaps = 121/473 (25%)
Query: 181 EYLYNKVQELVYDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHPL 240
+Y Y + V+++ F K + D +S + I ++ DA + T R L
Sbjct: 15 QYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSK--EEIDHII--MSKDAVSGTLR--L 67
Query: 241 HQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTH---RDPGSLLQHEYPEWEGGV 297
L + V E + + F++ R P S++ Y E
Sbjct: 68 FWTLLSKQEEMVQKFVE-----EVLRINYK--FLMSPIKTEQRQP-SMMTRMYIEQ---R 116
Query: 298 NAMYHGIRGFDSHD----------KLNLY-MERGDTVFFHPLLIHGSGTNVTKAVL-GTS 345
+ +Y+ + F ++ + L + V +L GSG K +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSG----KTWVALDV 170
Query: 346 QRSAGRTQRLANPV----------VKAYLEYMVDI-AVMMGASRETAQQELTASLQFES- 393
S ++ + + LE + + + + L+ S
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 394 --RLRNITKSNEEYRK----MSKLSNLVTISHLEHKYPILGTSFSNDRPSYMNFGSMGWT 447
LR + KS + Y + + N + IL T+ +
Sbjct: 231 QAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFK------------ 275
Query: 448 IGHEITHGFDSTGSRFDKNGTEINWWDPSTREKYKILWLLHLPWAANRPEEPRLPGLQRF 507
++T D + + + + T ++ K L L + RP++
Sbjct: 276 ---QVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQD--------- 317
Query: 508 SPRQMFWVS-AATSYCGLQRPEDLKDNLLNDEHTPPEWRAVG----------SLAN--SV 554
PR++ + S E ++D L T W+ V SL
Sbjct: 318 LPREVLTTNPRRLSIIA----ESIRDGL----ATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 555 EFGRDFGTGSRFDKN-----GT-EFNWWDPSTREKYKV----KSKCMVDQYGK 597
E+ + F S F + W+D + V +V++ K
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.16
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 522 CGLQRPEDLKDNLLNDEHTPPEWRA 546
CGL L D L+ D EWR
Sbjct: 48 CGLV----LSDKLV-DTR--SEWRT 65
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.70A {Escherichia coli} PDB:
2dbi_A 2csg_A*
Length = 461
Score = 34.0 bits (77), Expect = 0.16
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 230 DAGTQTSRHPLHQDLHYFP-HRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQ- 287
D R + + R WTA+ + G L V+P LL+
Sbjct: 273 DPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYVLLRP 332
Query: 288 -------HEYPEWEGG----VNAMYHG--IRGFDSHDKLNLYMERGDTVFFHPLLIHG 332
E G V+ +H I S K +E GD+V++H +IH
Sbjct: 333 LLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPK----LEAGDSVWWHCDVIHS 386
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK
structural genomi research consortium, TIM barrel; HET:
PLP; 1.90A {Agrobacterium tumefaciens}
Length = 244
Score = 30.2 bits (69), Expect = 1.9
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 167 AIIPYVAYPQELLGEYLYNKVQELVYDEVFEKYTMHKKLLDYVE-SFIGP 215
AI P + Q + GE N+VQE K+ K+ +E IGP
Sbjct: 44 AIQPVIDAGQRVFGE---NRVQEAQ-----GKWPALKEKTSDIELHLIGP 85
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 29.5 bits (67), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 438 YMNFGSMGWTIG----HEITHGFDSTGSRF 463
++ FGSMG + G EI G +G RF
Sbjct: 280 FLCFGSMGVSFGPSQIREIALGLKHSGVRF 309
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis,
light-harvesting, membrane protein, chloroplast,
chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD;
2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Length = 232
Score = 29.2 bits (64), Expect = 4.0
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%)
Query: 474 DPSTREKYKILWLLHLPWA------ANRPEEPRLPGLQRFSPRQMFWVSAATSYCGLQRP 527
DP T K + L ++H WA + PE G++ +++ + + +
Sbjct: 54 DPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLD 111
Query: 528 EDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFGTGSRFDKNGT-EFNWWDPSTREKYKV 586
+L++ + W L +VE R G + +DP
Sbjct: 112 YLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPE 171
Query: 587 KSKCMVDQ 594
+ +
Sbjct: 172 AFAELKVK 179
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A*
2c6n_A* 2c6f_A*
Length = 629
Score = 29.4 bits (65), Expect = 4.2
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 65 LWQVMSFSSTYLTEEMNNRYFKFSSTLRGVTARKPRWQECVDETKDLDIAVGALYIRKYF 124
W+ FS N ++ + +G+ R + D + YIR +
Sbjct: 444 QWRWGVFSGRTPPSRYNFDWWYLRTKYQGICPPVTRNETHFDAGAKFHVPNVTPYIRYFV 503
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 28.5 bits (64), Expect = 7.6
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 15 LAGRGLDKPD-LSHLSPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSS 73
RG+D P+ + + V+ P + + + + N +L + +S
Sbjct: 310 KLTRGVDLPERIKY--------VIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIF 361
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 28.8 bits (63), Expect = 8.0
Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 13/103 (12%)
Query: 355 LANPVVKAYLEYMVDIAVMMGASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNL 414
+ + + + + + + + L + S S
Sbjct: 846 INHLIFRGGAQITFLATFDV-SPKAVLGDRLLLTANVSSENNTPRTSK----------TT 894
Query: 415 VTIS-HLEHKYPILGTSFSNDRPSYMNFGSMGWTIGHEITHGF 456
+ +++ + +S Y+NF H H +
Sbjct: 895 FQLELPVKYAVYTVVSSHEQ-FTKYLNFSESEEKESHVAMHRY 936
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na
open conformation, chloride ION binding site; HET: NAG;
2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A
3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A
3scl_A
Length = 615
Score = 28.7 bits (63), Expect = 8.0
Identities = 16/102 (15%), Positives = 32/102 (31%)
Query: 25 LSHLSPVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRY 84
L + + PD + E F + L W+ M F ++ ++
Sbjct: 418 LKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKW 477
Query: 85 FKFSSTLRGVTARKPRWQECVDETKDLDIAVGALYIRKYFNQ 126
++ + GV P + D ++ +IR Y
Sbjct: 478 WEMKREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRT 519
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,926,907
Number of extensions: 609409
Number of successful extensions: 1218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 47
Length of query: 625
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 526
Effective length of database: 3,937,614
Effective search space: 2071184964
Effective search space used: 2071184964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)