RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2275
(625 letters)
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 696
Score = 100 bits (250), Expect = 9e-23
Identities = 53/274 (19%), Positives = 100/274 (36%), Gaps = 10/274 (3%)
Query: 30 PVKPDEVVNLEAPDFFRSFEPLLKATPKRVLANYLLWQVMSFSSTYLTEEMNNRYFKFSS 89
+ +E V + AP++ +P+L R L N + W+ + + L+ F
Sbjct: 283 SITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRK 342
Query: 90 TLRGVTARKPRWQECVD-ETKDLDIAVGALYIRKYFNQDAKANVETMVRLILDETYKYLS 148
L G T+ W+ C + +++ AVG LY+ F ++K VE ++ I + + L
Sbjct: 343 ALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLD 402
Query: 149 TVDWMDPNTRLAAQDKVKAIIPYVAYPQELLG-------EYLYNKVQELVYDEVFEKYT- 200
+ WMD T+ A++K AI + YP +++ EYL +E Y E +
Sbjct: 403 DLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLK 462
Query: 201 -MHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQTSRHPLHQDLHYFPHRPAHRIVAAW 259
K L + + + ++N +G P F +
Sbjct: 463 FSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYG 522
Query: 260 TAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEW 293
I + F + + L + +
Sbjct: 523 GIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQ 556
Score = 98.2 bits (243), Expect = 5e-22
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 45/229 (19%)
Query: 373 MMGASRETAQQELTASLQFESRLRNITKSNEEYRKMSKLSNLVTISHLEHKYPILGTSFS 432
++ + + ++L + + I+ + S N + + FS
Sbjct: 457 IIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQ----PPFFS 512
Query: 433 NDRPSYMNFGSMGWTIGHEITHGFDSTGSRFDKNGTEINWWDPSTREKY----------- 481
+ + +N+G +G IGHEITHGFD G F+K+G ++WW + +
Sbjct: 513 AQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQY 572
Query: 482 -----------------------------KILWLLHLPWAANRPEEPRLPGLQRFSPRQM 512
+ + + EE LPGL + +Q+
Sbjct: 573 GNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLD-LNHKQL 631
Query: 513 FWVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFG 561
F+++ A +CG RPE +++ D H+P +R +G+L NS EF F
Sbjct: 632 FFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFH 680
Score = 56.6 bits (135), Expect = 7e-09
Identities = 29/270 (10%), Positives = 80/270 (29%), Gaps = 27/270 (10%)
Query: 342 LGTSQRSAGRTQRLANPVVKAYLEYMVDIAVMMGA------SRETAQQELTASLQFESRL 395
LG R + AY+++M+ +A ++ E+ ++ E +
Sbjct: 170 LGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEI 229
Query: 396 RNITKSNEEYRKMSKLSNLVTISHLEHKYPILGTSFSNDRPSYMN--FGSMGWTIG--HE 451
N T E+ L N +T++ +++ + + ++ N ++ +I +
Sbjct: 230 ANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEED 289
Query: 452 ITHGFDSTGSRFDKNGTEINWWDPSTREKYKIL-----WLLHLPWAANRPEEPRLPGLQR 506
+ ++ T+ + D ++ + L + L G
Sbjct: 290 VVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTS 349
Query: 507 FSPRQMFWVSAATSYCGLQRPEDLKDNLLNDEHTPPEWRAVGSLANSVEFGRDFGTGSRF 566
+ + + E + + F
Sbjct: 350 ETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREV------------F 397
Query: 567 DKNGTEFNWWDPSTREKYKVKSKCMVDQYG 596
+ + W D T+++ + K+ + ++ G
Sbjct: 398 IQTLDDLTWMDAETKKRAEEKALAIKERIG 427
Score = 53.1 bits (126), Expect = 8e-08
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 560 FGTGSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNG-SVNGVNTL----- 613
G F+K+G +WW + +K +S+CMV QYG + G +NG+NTL
Sbjct: 537 DDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIA 596
Query: 614 --VGLAIA 619
GL A
Sbjct: 597 DNGGLGQA 604
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 67.5 bits (163), Expect = 7e-13
Identities = 99/225 (44%), Positives = 131/225 (58%), Gaps = 18/225 (8%)
Query: 116 GALYIRKYFNQDAKANVETMVRLILDETYKYLSTVDWMDPNTRLAAQDKVKAIIPYVAYP 175
G L I+ I + K L D ++
Sbjct: 23 GFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDV---------------TISKS 67
Query: 176 QELLGEYLYNKVQELVYDEVFEKYTMHKKLLDYVESFIGPHIRAIHSMLINKPPDAGTQT 235
+ E + KVQ+ D+ +Y ++L YVE F GP+I A+H+MLINKPPD+G +T
Sbjct: 68 EYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKT 127
Query: 236 SRHPLHQDLHYFPHRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEG 295
SRHPLHQDLHYFP RP+ IV AWTAME I ++NGCL VLP TH+ H+YP+WEG
Sbjct: 128 SRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSL--KPHDYPKWEG 185
Query: 296 GVNAMYHGIRGFD-SHDKLNLYMERGDTVFFHPLLIHGSGTNVTK 339
GVN M+HGI+ ++ + +++L ME+GDTVFFHPLLIHGSG N T+
Sbjct: 186 GVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQ 230
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2,
SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Length = 308
Score = 52.1 bits (123), Expect = 8e-08
Identities = 35/248 (14%), Positives = 67/248 (27%), Gaps = 34/248 (13%)
Query: 146 YLSTVDWMDPNTRLAAQDKVKAII-----PYVAYPQELLGEYLYNKVQELVYDEVFEKYT 200
++ D P + + + + G + D+ +
Sbjct: 18 FIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLASHI 77
Query: 201 MHKKLLDYVESFIGPHIRAIHSMLINKPPDAG------TQTSRHPLHQDLHYFPHRPAH- 253
++ D VES +GP++ + K P T + + +P
Sbjct: 78 CRPEICDRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFG 137
Query: 254 RIVAAWTAMERIDKDNGCLFVLPRTHRDPGSLLQHEYPEWEGGVNAMYHG---------- 303
+ WTA + NGCL +P T N++
Sbjct: 138 GTITVWTAFTDANIANGCLQFIPGTQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYD 197
Query: 304 --------IRGFDSHDKLNLYMERGDTVFFHPLLIHGSGTNVTKAVLGTSQRSAGRTQRL 355
D + + M+ G + F L+H S + + + + G R
Sbjct: 198 YRQLQIDENWKPDEASAVPMQMKAGQFIIFWSTLMHASYPHSGE----SQEMRMGFASRY 253
Query: 356 ANPVVKAY 363
V Y
Sbjct: 254 VPSFVHVY 261
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 41.5 bits (97), Expect = 2e-04
Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 24/157 (15%)
Query: 226 NKPPDAGTQTSRHPLHQDLHYFP-HRPAHRIVAAWTAMERIDKDNGCLFVLPRTHRDPGS 284
P +A +T + + R WTA+ + G L V+P
Sbjct: 230 YDPWNAAHRT---DVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYI 286
Query: 285 LLQH------------EYPEWEGGVNAMYHGIRGFDSHDKLNLYMERGDTVFFHPLLIHG 332
LL+ P ++ +H + + +E GD+V++H +IH
Sbjct: 287 LLRPLLDDVPEDELCGVAPGRVLPISEQWHPL--LMAALTSIPPLEAGDSVWWHCDVIHS 344
Query: 333 SGTNVTKAVLGTSQRSAGRTQRLANPVVKAYLEYMVD 369
V + A P+ + L Y
Sbjct: 345 ----VAPVENQQGWGNVMYI--PAAPMCEKNLAYARK 375
>d1esfa1 b.40.2.2 (A:1-120) Staphylococcal enterotoxin A, SEA
{Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 27.9 bits (62), Expect = 1.8
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 550 LANSVEFGRDFGTGSRFDKNGTEFNWWDPSTREKYKVKSKCMVDQYGKYVVPEVNGSVNG 609
L +++ F F S ++ +F+ D KYK K VD YG Y + G
Sbjct: 48 LQHTILFKGFFTDHSWYNDLLVDFDSKDIVD--KYKGKK---VDLYGAYYGYQCAGGTPN 102
Query: 610 VNT 612
Sbjct: 103 KTA 105
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 27.7 bits (61), Expect = 1.8
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 133 ETMVRLIL---DETYKYLSTVDWMD-PNTRLAAQDKVKAIIPYVAYPQELLGEYLYNKVQ 188
E +R++ + K ++ D + D+ I P + L + + +
Sbjct: 12 EIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAE 71
Query: 189 ELVYDEVFEKYTMHKKLLDYVES-------FIGPHIRAIHSM 223
+ Y + ++ E FIGP I M
Sbjct: 72 ITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLM 113
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 26.3 bits (58), Expect = 3.8
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 173 AYPQE---LLGEYLYNKVQELVYDE 194
Y Q+ LGE LY KV +E
Sbjct: 15 FYQQKQRQALGEQLYKKVSAKTSNE 39
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 27.2 bits (60), Expect = 4.9
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 60 LANYLLWQVMSFSSTYLTEEMNNRYFKFSSTLRGVTARKPRWQE-CVDETKDLDIAVG-- 116
+ L+Q+ + ++ + R+ K L A++ + + D A+
Sbjct: 78 VYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILV 137
Query: 117 ALYIRKYFNQDAKANVETMVRLILDETYKYLSTVDWMDPNTRLAAQDKVKAIIPYVAY 174
L + + + T + D Y + L + + A+I
Sbjct: 138 GLAGSELIRAGKQYGLTTREEVFADRGY---------QADGSLVPRSQSGALIENEEQ 186
>d1pp0a_ d.103.1.1 (A:) Volvatoxin A2 {Volvariella volvacea,
different isoforms [TaxId: 36659]}
Length = 194
Score = 26.7 bits (59), Expect = 7.4
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 19/87 (21%)
Query: 67 QVMSFSSTYLTEEMNNRYFKFSSTLRGVTARKPRWQECVDETKDLDIAVGALYIRKYFNQ 126
QV+ FS YL E + YF + P ++ +D D++ KY
Sbjct: 19 QVLKFSGKYLKLEQDKAYFDW-----------PGFKTAIDNYTGEDLSF-----DKYDQS 62
Query: 127 ---DAKANVETMVRLILDETYKYLSTV 150
V MV I + + V
Sbjct: 63 TINQQSQEVGAMVDKIAKFLHDAFAAV 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,442,244
Number of extensions: 118856
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 17
Length of query: 625
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 534
Effective length of database: 1,158,166
Effective search space: 618460644
Effective search space used: 618460644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)