Query psy2278
Match_columns 413
No_of_seqs 208 out of 1579
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:36:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2877|consensus 100.0 5.3E-91 1.2E-95 689.4 28.1 365 17-383 5-378 (389)
2 PLN02359 ethanolaminephosphotr 100.0 2.6E-82 5.7E-87 642.7 31.3 358 19-387 1-388 (389)
3 PTZ00307 ethanolamine phosphot 100.0 2.1E-80 4.6E-85 631.9 27.6 371 7-387 6-415 (417)
4 PLN03039 ethanolaminephosphotr 100.0 4.4E-67 9.5E-72 523.0 23.3 309 70-387 1-336 (337)
5 COG5050 EPT1 sn-1,2-diacylglyc 100.0 3E-64 6.5E-69 486.7 23.5 357 20-384 2-379 (384)
6 PF01066 CDP-OH_P_transf: CDP- 99.6 5.6E-16 1.2E-20 129.7 9.4 76 60-145 1-76 (101)
7 COG0558 PgsA Phosphatidylglyce 99.6 2.6E-14 5.6E-19 133.1 15.2 142 59-211 10-153 (192)
8 TIGR00560 pgsA CDP-diacylglyce 99.3 9E-11 2E-15 108.6 14.1 132 63-202 3-137 (182)
9 COG1183 PssA Phosphatidylserin 99.1 4.3E-10 9.3E-15 107.7 11.2 86 62-158 10-95 (234)
10 PLN02558 CDP-diacylglycerol-gl 99.0 5.9E-09 1.3E-13 98.0 13.1 93 62-162 10-106 (203)
11 KOG3240|consensus 98.9 4.1E-09 8.9E-14 96.9 9.2 106 59-182 11-116 (218)
12 TIGR00473 pssA CDP-diacylglyce 98.9 1.5E-08 3.2E-13 91.2 12.5 74 68-152 1-74 (151)
13 PRK10832 phosphatidylglyceroph 98.8 9.8E-09 2.1E-13 95.1 8.7 74 62-143 4-77 (182)
14 PLN02794 cardiolipin synthase 98.8 2.1E-08 4.6E-13 99.6 10.4 76 62-148 143-218 (341)
15 KOG1617|consensus 98.1 4.6E-06 1E-10 78.6 5.4 112 32-158 39-153 (243)
16 COG0053 MMT1 Predicted Co/Zn/C 66.3 43 0.00094 33.5 9.7 80 93-173 115-194 (304)
17 PF07214 DUF1418: Protein of u 52.1 42 0.00091 28.1 5.5 41 357-397 52-92 (96)
18 PRK09509 fieF ferrous iron eff 44.6 3E+02 0.0064 27.1 11.5 34 117-150 137-170 (299)
19 PF04535 DUF588: Domain of unk 43.6 2.1E+02 0.0045 25.3 9.2 83 69-151 12-106 (149)
20 KOG2877|consensus 42.7 44 0.00095 34.7 5.2 42 345-386 348-389 (389)
21 TIGR01297 CDF cation diffusion 42.2 1.8E+02 0.004 27.7 9.4 32 118-149 117-148 (268)
22 KOG1580|consensus 41.8 24 0.00052 34.5 3.0 30 100-129 299-328 (337)
23 PRK03557 zinc transporter ZitB 29.2 4.8E+02 0.01 26.0 10.2 54 120-173 146-199 (312)
24 TIGR00802 nico high-affinity n 24.3 3.2E+02 0.0069 27.3 7.6 73 39-120 124-204 (280)
25 COG4244 Predicted membrane pro 22.4 6.1E+02 0.013 23.2 9.1 31 92-122 49-79 (160)
No 1
>KOG2877|consensus
Probab=100.00 E-value=5.3e-91 Score=689.36 Aligned_cols=365 Identities=48% Similarity=0.849 Sum_probs=331.4
Q ss_pred CCCCCCCHHHHHHhhcCccccCCCcchhhh-hhhhHHHHhhhCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchh
Q psy2278 17 TSSPILNNKQLKRLGAHKYSCESNSILDAY-FQPWWNYLTQCLPLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPR 95 (413)
Q Consensus 17 ~~~~~ls~~~l~~L~~ykYs~~d~S~l~~~-l~p~w~~~v~~~P~~vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~ 95 (413)
..++++++||+++|+|||||++|+|++++| +||||||+++.+|+|+|||+||++|+++++.+.+++.+|+|+++++.|+
T Consensus 5 ~~~~~l~~~~l~~L~~hkYs~vD~S~Ls~yvl~pfW~~~v~~~P~wmAPNlITL~Gl~~~v~~~Ll~~~ydP~~~~~~P~ 84 (389)
T KOG2877|consen 5 LMGEILSPEQLKRLDEHKYSAVDNSLLSKYVLQPFWNWLVKVFPLWMAPNLITLIGLIFNVITVLLLLYYDPNLDEPAPR 84 (389)
T ss_pred cccCccCHHHHhhHhhccccccCcchhhhhhhhHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence 456889999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHhHHHHHHH
Q psy2278 96 WASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQCFCAICLFYCA 175 (413)
Q Consensus 96 w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~fy~~ 175 (413)
|+|+.+|+++|+||++|++|||||||||+|||+||+||||||++++++..++.++++|+|.++.+.+...++++..||++
T Consensus 85 W~y~a~alglFlYqTlDaiDGkQARRTnsSsPLGELFDHG~DS~stvf~~l~~~s~~~~G~~~~~~~~~~~~~~~~FY~a 164 (389)
T KOG2877|consen 85 WTYFAAALGLFLYQTLDAIDGKQARRTNSSSPLGELFDHGCDSISTVFVTLAVCSAFGLGTSPYWLFLFQFASLVLFYLA 164 (389)
T ss_pred HHHHHHHHHHHHHHhcccccchhhccCCCCCCcHhhhcccchhHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHhhCeeeecCcCcchhHHHHHHHHHHhhhcccccceeccccc-cc--hhhHHHHHHH-HHhhccceeeeeEEEecc
Q psy2278 176 HWQTYVCGTLKFGKVDVTEAQVTIICMHMGTVLFGVEFWQYKLFYK-FE--MRYIIGLMTI-VCCSITLRYMIEVILTCG 251 (413)
Q Consensus 176 ~weey~tg~l~lg~i~~tE~~~~~~~~~l~t~~~G~~~w~~~i~~~-~g--~~~~~~~~~i-~~~~~~~~~~~~vi~~~~ 251 (413)
|||||+||++++|.++.||+|+.+++++++|+++|+++|+++++.. ++ .++.+.++++ .......++ .||++..+
T Consensus 165 hWe~Y~Tg~L~l~~~~gtEgq~~i~~~~l~Tai~G~~~W~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nV~~~~~ 243 (389)
T KOG2877|consen 165 HWEEYHTGTLRLGRFDGTEGQVSIIIVHLLTAIVGPEFWHTPIPTNDVGTKLKYLYALITFALILNSLINY-TNVIKAGG 243 (389)
T ss_pred chhheecceEEEEEEeccchhHHHHHHHHHHHHhcHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHhh-hheeeecc
Confidence 9999999999999999999999999999999999999999987621 33 2333333111 111122356 78887666
Q ss_pred ccCCCCcccccccccchHHHHHHHHHHh--hhccCcccccccchhHHHHHHHHHHHhhhhhhhhhhhcCCCCCccchhhH
Q psy2278 252 AGKNGSTVADTSVLSPIIPLSLFMGPAI--YLKVVSPHLYEQNPVIFILTFGLVAARTTNRLVVAHMSKSEMCYTDSSML 329 (413)
Q Consensus 252 ~~k~~~~~~~~~~l~p~~p~~~~~~~~~--~~~s~~~~i~~~~p~lf~~~~G~vfa~~t~rlIvahmtk~~~~~~~~~ll 329 (413)
.+|+||++++++++.|..|+..++.+.. +..| ++++++.||++|++++|++||+.|+|+|+|||||+|++++|++++
T Consensus 244 ~~kngS~~~~~s~l~p~~~l~~~~~~~~~~~~~s-~~~~~e~h~~~fiL~fG~vfa~~t~rlIvahmt~s~~~l~n~~~l 322 (389)
T KOG2877|consen 244 SGKNGSTIAGTSVLSPSVPLLGVVLFWAMIASKS-PLNVFEPHPILFILMFGFVFAKVTGRLIVAHMTKSEFPLWNWPLL 322 (389)
T ss_pred ccCCcceeeccccccchHHHHHHHHHHHHHhhcC-hhhhccccHHHHHHHHHHHHHHHhhheeeeecccCCccccChHHH
Confidence 7799999999999999999888777655 5567 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCchh--HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCceeEEE
Q psy2278 330 GPLALVLNCYFNNILP--DRLLLYLSLIWSIYELIRFEKTVCLEICKFLNIELFRI 383 (413)
Q Consensus 330 ~~~~l~~~~~~~~~~~--E~~lL~~~~v~~~~~~~hy~~~Vi~qic~~L~I~~F~I 383 (413)
+|.++.++++++...+ |..+++...++...+|+||+..|+.|+|+|++|++|+.
T Consensus 323 ~p~l~~~~~~~~~~~~~~e~~ll~~~~~~~~~~~~~~~l~v~~~f~~h~~i~i~~~ 378 (389)
T KOG2877|consen 323 GPLLLLLLQYFNFYVDRYEYGLLWIALVWSTLGYLHYCLGVVLQFCRHLIIYIFEF 378 (389)
T ss_pred HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999988877 89999999999999999999999999999999996643
No 2
>PLN02359 ethanolaminephosphotransferase
Probab=100.00 E-value=2.6e-82 Score=642.68 Aligned_cols=358 Identities=29% Similarity=0.521 Sum_probs=299.9
Q ss_pred CCCCCHHHHHHhhcCccccCCCcchhhh-hhhhHHHHhhhCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHH
Q psy2278 19 SPILNNKQLKRLGAHKYSCESNSILDAY-FQPWWNYLTQCLPLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWA 97 (413)
Q Consensus 19 ~~~ls~~~l~~L~~ykYs~~d~S~l~~~-l~p~w~~~v~~~P~~vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~ 97 (413)
+.|++||++++||+|||+++|+|++++| ++|+|+++++++|+|++||++|++|+++++++.+++.+++|+++++.|+|+
T Consensus 1 m~yI~~~~L~~L~~YkY~~~d~S~l~~~vl~p~w~~~v~~~P~~~aPN~iTl~G~~~~~~~~~~~~~~~p~~~~~~P~w~ 80 (389)
T PLN02359 1 MGYIGAHGVAALHRYKYSGVDHSYVAKYVLQPFWSRFVNFFPLWMPPNMITLMGFMFLLTSALLGYIYSPHLDTPPPRWV 80 (389)
T ss_pred CceeCHHHHhHHhhCCCcCCCccHHHHHHhHHHHHHHHHhCcCCCCCCchHHHHHHHHHHHHHHHHHhCcccccCCccHH
Confidence 4689999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHhHHHHHHHHH
Q psy2278 98 SFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQCFCAICLFYCAHW 177 (413)
Q Consensus 98 ~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~fy~~~w 177 (413)
++.+|+++++||++|++|||||||||+|||+||+||||||++++++..+..+.+.+.|..+.+. .++++++||++||
T Consensus 81 ~~~~a~~lfly~~~D~~DGkqARrt~~ssplGelfDHg~D~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~Fy~~~W 157 (389)
T PLN02359 81 HFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFETMAFGSTAMCGRDTFWF---WVISAVPFYGATW 157 (389)
T ss_pred HHHHHHHHHHHHHHHhccHHHHhhcCCCCCchhHHhhhhHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765433 3456789999999
Q ss_pred HHHhhCeeeecCcC-cchhHHHHHHHHHHhhhcccccceecccc---ccc---------hhhHHHH-----HHHHHhhcc
Q psy2278 178 QTYVCGTLKFGKVD-VTEAQVTIICMHMGTVLFGVEFWQYKLFY---KFE---------MRYIIGL-----MTIVCCSIT 239 (413)
Q Consensus 178 eey~tg~l~lg~i~-~tE~~~~~~~~~l~t~~~G~~~w~~~i~~---~~g---------~~~~~~~-----~~i~~~~~~ 239 (413)
||||||++++|.+| |||+++++++++++|+++|+++|++++.. .+| ++...++ +.+.+. .
T Consensus 158 e~y~Tg~l~l~~~~g~tEg~~~~~~~~~~t~i~G~~~W~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 235 (389)
T PLN02359 158 EHFFTNTLILPVINGPTEGLMLIYCAHFFTAIVGAEWWAQDFGKSIPFLSWVPFVSEIQTYRIVLFLMIAFAVIPTV--A 235 (389)
T ss_pred HHHhcCeEecCCCCcccHHHHHHHHHHHHHHhcCcHHhcccccccccccccccccccccHHHHHHHHHHHHHHHHHH--H
Confidence 99999999999997 99999999999999999999999988421 111 1111111 111111 1
Q ss_pred ceeeeeEEEeccccCCCCcccccccccchHHHHHHHHHHh-h-hccCcccccccchhHHHHHHHHHHHhhhhhhhhhhhc
Q psy2278 240 LRYMIEVILTCGAGKNGSTVADTSVLSPIIPLSLFMGPAI-Y-LKVVSPHLYEQNPVIFILTFGLVAARTTNRLVVAHMS 317 (413)
Q Consensus 240 ~~~~~~vi~~~~~~k~~~~~~~~~~l~p~~p~~~~~~~~~-~-~~s~~~~i~~~~p~lf~~~~G~vfa~~t~rlIvahmt 317 (413)
.++ +|++ +..++|+++..+ .+++++|+..+..... | +.| |++++++||+++++++|++||+++||+||||||
T Consensus 236 ~~i-~nv~-~~~~~k~~s~~~---~l~~l~P~~~~~~~~~~w~~~s-ps~i~~~~p~l~~~~~G~~~a~~v~rlIvahmt 309 (389)
T PLN02359 236 FNV-SNVY-KVVQARKGSMLL---ALAMLYPFVTLLGGVLIWDYLS-PSDLMRNYPHLVVLGTGLAFGFLVGRMILAHLC 309 (389)
T ss_pred HHH-HHHH-HHHhhcCCChHH---HHhHHHHHHHHHHHHHHHHHhC-hHhHHHcCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233 3443 333445555544 4667778766654444 4 467 899999999999999999999999999999999
Q ss_pred CCCCCccchhhHH----HHHHH--HhhhcC---CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCceeEEEeccc
Q psy2278 318 KSEMCYTDSSMLG----PLALV--LNCYFN---NILPDRLLLYLSLIWSIYELIRFEKTVCLEICKFLNIELFRIKVLS 387 (413)
Q Consensus 318 k~~~~~~~~~ll~----~~~l~--~~~~~~---~~~~E~~lL~~~~v~~~~~~~hy~~~Vi~qic~~L~I~~F~Ik~~~ 387 (413)
|+|+|++|..+.. |.++. ++.+++ ...+|..++++++++++..|+||+++||+|||+||||+||||||++
T Consensus 310 k~~fp~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~s~~~y~hf~~~Vi~qi~~~L~I~~fsI~~~~ 388 (389)
T PLN02359 310 DEPKGLKTNMCMSLLYLPFAIANALTARLNDGVPLVDEFWVLLGYCAFTVSLYLHFATSVIHEITTALGIYCFRITRKE 388 (389)
T ss_pred CCCCchhhHHHHhHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeEEEeCCCC
Confidence 9999999875432 33332 333332 3678999999999999999999999999999999999999999873
No 3
>PTZ00307 ethanolamine phosphotransferase; Provisional
Probab=100.00 E-value=2.1e-80 Score=631.92 Aligned_cols=371 Identities=25% Similarity=0.444 Sum_probs=297.8
Q ss_pred hHhhhhccCCCCCCCCCHHHHHHhhcCccccCCCcchhhh-hhhhHHHHhhhCCCCcCccHHHHHHHHHHHHHHHHHHHH
Q psy2278 7 LAMRFDMLHFTSSPILNNKQLKRLGAHKYSCESNSILDAY-FQPWWNYLTQCLPLWLAPNLITLAGLIVNILTSLILFWY 85 (413)
Q Consensus 7 ~~~~~~~~~~~~~~~ls~~~l~~L~~ykYs~~d~S~l~~~-l~p~w~~~v~~~P~~vaPN~ITl~g~~~~~~~~~l~~~~ 85 (413)
-+||+.+ +..-++|++|+|+++||+|||+++|+|++++| ++||||++++++|+|++||+||++|+++++++.+++.++
T Consensus 6 ~~~~~~~-~~~~~~~i~~~~l~~L~~YkYs~~d~S~l~~yvl~pfw~~~v~~~P~~laPN~ITl~G~~~~~~~~~~~~~~ 84 (417)
T PTZ00307 6 TARRISL-NPLENEYIPPAYLPNLKKYKYSSTDSSIISRYVLQRYWNFIVNLVPMTVAPNCITFTGFLIGMSSAALLLYF 84 (417)
T ss_pred ccceecc-cccceeeeCHHHHhHHHhCCCCCCCCCHHHHHhhHHHHHHHHHHccCCCCCCeeeHHhHHHHHHHHHHHHHh
Confidence 3566654 55666999999999999999999999999999 999999999999999999999999999999999999889
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy2278 86 SPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQC 165 (413)
Q Consensus 86 ~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (413)
+|+.+++.|+|.++.+++++|+||++|++|||||||||++||+||+|||+||++++.+..++++.+++.|.. ..+...
T Consensus 85 ~~~~~~~~p~w~~~~~a~~lfly~~~D~lDGkqARrt~~sSplGelfDhg~D~~~~~~~~~~~~~a~~~~~~--~~~~~~ 162 (417)
T PTZ00307 85 YFFEEGVYPSWVLYYAAFALFAYQTLDAIDGKQARRTGTGSPLGELFDHGCDAFLTPFVLLNVSLATYMTPV--ERFWLS 162 (417)
T ss_pred cccccCCCccHHHHHHHHHHHHHHHHhhcchHHhhhcCCCCCchhHHHhhhhHHHHHHHHHHHHHHhcCCcH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888753 334444
Q ss_pred HHhHHHHHHHHHHHHhhCeeeecCcC-cchhHHHHHHHHHHhhhcccccceeccccccchhhHHHHHH------------
Q psy2278 166 FCAICLFYCAHWQTYVCGTLKFGKVD-VTEAQVTIICMHMGTVLFGVEFWQYKLFYKFEMRYIIGLMT------------ 232 (413)
Q Consensus 166 ~~~~~~fy~~~weey~tg~l~lg~i~-~tE~~~~~~~~~l~t~~~G~~~w~~~i~~~~g~~~~~~~~~------------ 232 (413)
+.+.++||++||||||||++.+|+++ |||+++++++++++|+++|+++|++++....|+++.+++..
T Consensus 163 ~~~~~~fy~~~Weey~Tg~l~l~~~~GptEg~l~~~~~~~~t~~~G~~~W~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 242 (417)
T PTZ00307 163 TISSMSLFTAIWEQFSTGTFDLGYVNGPTEGIILNCVLFIVSGVYGESIWDTPAVGPYDVAYPPVLSSFFPGCSGTVHIE 242 (417)
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCcCCCcHHHHHHHHHHHHHHhcchHHhccccccccccccchhHHHHHhccccccccc
Confidence 55678999999999999999999996 99999999999999999999999987532123332222200
Q ss_pred ----------HHHhh--ccceeeeeEEEeccccCCCCcccccccccchHHHHHHHHHHh-hhccCcccccccchhHHHHH
Q psy2278 233 ----------IVCCS--ITLRYMIEVILTCGAGKNGSTVADTSVLSPIIPLSLFMGPAI-YLKVVSPHLYEQNPVIFILT 299 (413)
Q Consensus 233 ----------i~~~~--~~~~~~~~vi~~~~~~k~~~~~~~~~~l~p~~p~~~~~~~~~-~~~s~~~~i~~~~p~lf~~~ 299 (413)
++.+. ...++ ++++.+++++| .....++|++|+........ ++.+ +++++++||++++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~Nv-~~~~~~~~~~~-----~~~~~~~~llP~~~~~~~~~w~~~~-~s~i~~~~p~l~~~~ 315 (417)
T PTZ00307 243 SVRSVLFLLFLVSCPFTILTNV-VHVVLRPTVHA-----SKVTPMLAALPILTMTALHVHVFVV-FPNLHVKFPFALELS 315 (417)
T ss_pred chhhHHHHHHHHhhHHHHHHHH-HHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHHHHc-cchHHhhCChHHHHH
Confidence 00000 00122 33332211122 23345678899876654433 5566 789999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCCCCccchhhHHHHH-HH-----HhhhcCCc---hhHHHHHHHHHHHHHH---HHHHhHHH
Q psy2278 300 FGLVAARTTNRLVVAHMSKSEMCYTDSSMLGPLA-LV-----LNCYFNNI---LPDRLLLYLSLIWSIY---ELIRFEKT 367 (413)
Q Consensus 300 ~G~vfa~~t~rlIvahmtk~~~~~~~~~ll~~~~-l~-----~~~~~~~~---~~E~~lL~~~~v~~~~---~~~hy~~~ 367 (413)
+|++||++++|||||||||+|+|+||+.+++++. .. .+.+.+.. ..|..++|++++++.. .|.||+++
T Consensus 316 ~G~vfa~~v~RmIvAhmtk~~fp~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~Y~~f~~~ 395 (417)
T PTZ00307 316 YGLLMSITVTRLTLARLSAMPYRTFNWHIVITFLALTAASLMHYAGDASVEHKYVEPSLGWALTGLAVFAAWQYGHMILS 395 (417)
T ss_pred HHHHHHHHhhheeeeeccCCCCcchhhHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998775544 21 12222222 3345578877666666 55699999
Q ss_pred HHHHHhhhcCceeEEEeccc
Q psy2278 368 VCLEICKFLNIELFRIKVLS 387 (413)
Q Consensus 368 Vi~qic~~L~I~~F~Ik~~~ 387 (413)
||+|||+||||+|||||++.
T Consensus 396 Vi~qIc~~L~I~cfsIk~~~ 415 (417)
T PTZ00307 396 AFTQIARYLSISIMSIKPRK 415 (417)
T ss_pred HHHHHHhhhCceEEEecCCC
Confidence 99999999999999998763
No 4
>PLN03039 ethanolaminephosphotransferase; Provisional
Probab=100.00 E-value=4.4e-67 Score=523.03 Aligned_cols=309 Identities=30% Similarity=0.493 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHH
Q psy2278 70 AGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAAC 149 (413)
Q Consensus 70 ~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~ 149 (413)
+|+++.+.+.+++.+|+|+++++.|+|+++.+|+++|+||++|++|||||||||+|||+||+||||||++++++..+..+
T Consensus 1 ~GF~fiv~~~~l~~~y~p~~~~~~P~w~~~~~a~~lf~YqtlD~~DGkqARRt~~sspLGelfDHg~Ds~~~~~~~~~~~ 80 (337)
T PLN03039 1 MGFMFLLTSALLGYIYSPKLDSPPPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFEAMAFG 80 (337)
T ss_pred CceeehHHHHHHHHhcCCCcCCCCCCCHHHHHHHHHHHHHHHhhcchhhhcccCCCCCchHhHhcchhHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHhHHHHHHHHHHHHhhCeeeecCcC-cchhHHHHHHHHHHhhhcccccceecccc---ccc--
Q psy2278 150 ISVNMGEYPNWMFYQCFCAICLFYCAHWQTYVCGTLKFGKVD-VTEAQVTIICMHMGTVLFGVEFWQYKLFY---KFE-- 223 (413)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~~~~fy~~~weey~tg~l~lg~i~-~tE~~~~~~~~~l~t~~~G~~~w~~~i~~---~~g-- 223 (413)
.+.++|....+. .+++.++||++||||||||++++|.+| |||+++++++++++|+++|+++|+++... .+|
T Consensus 81 ~~~~~g~~~~~~---~~~~~~~fy~~~We~y~tg~l~l~~~~g~~e~~~~~~~~~~~t~~~G~~iW~~~~~~~~~~~~~~ 157 (337)
T PLN03039 81 STAMCGRDTFWF---WVISAIPFFGATWEHYFTNTLILPVINGPTEGLALIFCGHFFTAIVGAEWWAQPFGKSIPLFSWV 157 (337)
T ss_pred HHhccCchHHHH---HHHHHHHHHHHHHHHheeeEEEecCcCCCcHHHHHHHHHHHHHHhcCHHHhcCcccccccccccc
Confidence 888888765443 345678899999999999999999995 99999999999999999999999987421 111
Q ss_pred --hhh-----HHHHHHHHHh---hccceeeeeEEEeccccCCCCcccccccccchHHHHHHHHHHh-h-hccCccccccc
Q psy2278 224 --MRY-----IIGLMTIVCC---SITLRYMIEVILTCGAGKNGSTVADTSVLSPIIPLSLFMGPAI-Y-LKVVSPHLYEQ 291 (413)
Q Consensus 224 --~~~-----~~~~~~i~~~---~~~~~~~~~vi~~~~~~k~~~~~~~~~~l~p~~p~~~~~~~~~-~-~~s~~~~i~~~ 291 (413)
... ...++.+... .+..+. +|++ +..++|+++..+. +++++|+..+..... | +.| |++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~nv~-~~~~~k~~s~~~~---~~~l~P~~~~~~~~~~w~~~s-p~~i~~~ 231 (337)
T PLN03039 158 PFLNEIQMSRAILFMMIAFAVIPTLAFNT-SNVY-KVVHSRNGSMLLA---LAMLYPFVTLIAGVLIWDYLS-PIDLIAN 231 (337)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHhcCCChHHH---HHHHHHHHHHHHHHHHHHHhC-hHHHHHc
Confidence 111 1111111110 011122 3443 3334455555544 567777766555444 3 467 8999999
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhhcCCCCCccchhhH----HHHHH--HHhhhcC---CchhHHHHHHHHHHHHHHHHH
Q psy2278 292 NPVIFILTFGLVAARTTNRLVVAHMSKSEMCYTDSSML----GPLAL--VLNCYFN---NILPDRLLLYLSLIWSIYELI 362 (413)
Q Consensus 292 ~p~lf~~~~G~vfa~~t~rlIvahmtk~~~~~~~~~ll----~~~~l--~~~~~~~---~~~~E~~lL~~~~v~~~~~~~ 362 (413)
||+++++++|++||+++||+|||||||+|+|+||..++ +|+++ .++++++ ...+|..+++++++++++.|+
T Consensus 232 ~p~l~~~~~G~~~a~~v~rlIvahmtk~~~p~~~~~~~~~l~~p~~l~~~l~~~~~~g~~~~~e~~~l~~~~~~s~~~y~ 311 (337)
T PLN03039 232 YPHLVVLGTGLAFGFLVGRMILAHLCDEPKGLKTNMCMSLLYLPFALANALTARLNAGVPLVDEFWVLLGYCIFTLSLYA 311 (337)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997543 35433 2245553 267899999999999999999
Q ss_pred HhHHHHHHHHhhhcCceeEEEeccc
Q psy2278 363 RFEKTVCLEICKFLNIELFRIKVLS 387 (413)
Q Consensus 363 hy~~~Vi~qic~~L~I~~F~Ik~~~ 387 (413)
||+++||+|||+||||+||||||++
T Consensus 312 hf~~~Vi~qi~~~L~I~~fsIk~~~ 336 (337)
T PLN03039 312 HFATSVIHEITEALGIYCFRITRKE 336 (337)
T ss_pred HHHHHHHHHHHHHhCceEEEecCCC
Confidence 9999999999999999999999874
No 5
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=100.00 E-value=3e-64 Score=486.73 Aligned_cols=357 Identities=30% Similarity=0.512 Sum_probs=278.5
Q ss_pred CCCCHHHHHHhhcCccccCCCcchhhh-hhhhHHHHhhhCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHH
Q psy2278 20 PILNNKQLKRLGAHKYSCESNSILDAY-FQPWWNYLTQCLPLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWAS 98 (413)
Q Consensus 20 ~~ls~~~l~~L~~ykYs~~d~S~l~~~-l~p~w~~~v~~~P~~vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~ 98 (413)
..++++++++||+|||+++|.|++++| ++|||+|+.+.+|.|+|||+||+.|+++++.+.++.++|+|.++.+.|+|.|
T Consensus 2 m~i~~~~is~l~~y~y~~~DrSlLs~y~L~pfw~~ll~viP~~mAPNliTL~Gl~fiv~nvlt~l~ydp~~~~~~~~w~y 81 (384)
T COG5050 2 MHITSRRISRLKKYKYQSEDRSLLSKYFLKPFWVPLLRVIPYWMAPNLITLCGLIFIVANVLTTLYYDPCLSVDGPRWTY 81 (384)
T ss_pred CCCCHHHHHHHHhhhccccchhhhhHHhhHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHhcccccCCCcchhHH
Confidence 358899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHhHHHHHHHHHH
Q psy2278 99 FLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQCFCAICLFYCAHWQ 178 (413)
Q Consensus 99 ~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~fy~~~we 178 (413)
+..++++|+||++|++||.||||||++|||||+|||+.|++++.+..+.++.++|+|.++..+ +..+..+..||+++||
T Consensus 82 fs~alg~FlYqtfD~lDG~qARRTGt~spLGeLFDH~vDsint~l~~i~~~s~~g~g~s~~~i-~~qfA~l~~FYlstwE 160 (384)
T COG5050 82 FSYALGLFLYQTFDALDGRQARRTGTGSPLGELFDHGVDSINTTLSAIIFVSAFGMGESFLLI-LSQFAPLFVFYLSTWE 160 (384)
T ss_pred HHHHHHHHHHhhccccccHhhhcCCCCCCcHHHHhhhHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876443 3345678899999999
Q ss_pred HHhhCeeeecCc-CcchhHHHHHHHHHHhhhccc-ccceeccccccch--h--hHHHH----------HHHHHhhcccee
Q psy2278 179 TYVCGTLKFGKV-DVTEAQVTIICMHMGTVLFGV-EFWQYKLFYKFEM--R--YIIGL----------MTIVCCSITLRY 242 (413)
Q Consensus 179 ey~tg~l~lg~i-~~tE~~~~~~~~~l~t~~~G~-~~w~~~i~~~~g~--~--~~~~~----------~~i~~~~~~~~~ 242 (413)
|||||+++++.+ ||.|+.+++++.++.|+++|+ .+|+.... -++. + ..+.+ +.+.+... +.
T Consensus 161 EyhTg~lyLa~fsGpvEgIv~~~g~~~~t~i~Gk~~fwH~~~~-sf~~~~~~~~~~t~gs~~~a~v~~~ll~n~v~--~~ 237 (384)
T COG5050 161 EYHTGTLYLARFSGPVEGIVLVCGSFIATGIYGKQLFWHTYAG-SFEWLRKVFDVPTLGSCTFAFVCVALLSNGVC--AF 237 (384)
T ss_pred HHhcceEEEEEecCCcceeeehhHHHHHHhhccccceeecccc-ceeceeeeeeehhhhcchHHHHHHHHHHHHHH--HH
Confidence 999999999999 699999999999999999994 58986532 2220 0 00111 11111110 00
Q ss_pred eeeEEE-eccccCCCCcccccccccchHHHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHhhhhhhhhhhhcCCCC
Q psy2278 243 MIEVIL-TCGAGKNGSTVADTSVLSPIIPLSLFMGPAIYLKVVSPHLYEQNPVIFILTFGLVAARTTNRLVVAHMSKSEM 321 (413)
Q Consensus 243 ~~~vi~-~~~~~k~~~~~~~~~~l~p~~p~~~~~~~~~~~~s~~~~i~~~~p~lf~~~~G~vfa~~t~rlIvahmtk~~~ 321 (413)
-|+.. ...+..+++.+...|++..++|+...+....-+.+..+. +-+ ...+...|+++|.-++|+|++|.+++|+
T Consensus 238 -~n~l~~~~~~~~~~~~~~~~Sai~gllpFf~~~v~i~tl~~~qp~-fI~--l~~il~~gf~~A~~vgrvIvshit~~~f 313 (384)
T COG5050 238 -RNALFYYERTANNCALILHLSAILGLLPFFAYFVSIFTLVPTQPS-FIT--LALILLYGFIFAFRVGRVIVSHITTQPF 313 (384)
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchH-HHH--HHHHHHhhhhhhhhhhhhhhcccccCCC
Confidence 01110 000112333344445555677777655433211110011 111 4577889999999999999999999999
Q ss_pred CccchhhHHHHHH-HHhhh-cCCchh-HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCceeEEEe
Q psy2278 322 CYTDSSMLGPLAL-VLNCY-FNNILP-DRLLLYLSLIWSIYELIRFEKTVCLEICKFLNIELFRIK 384 (413)
Q Consensus 322 ~~~~~~ll~~~~l-~~~~~-~~~~~~-E~~lL~~~~v~~~~~~~hy~~~Vi~qic~~L~I~~F~Ik 384 (413)
|++|.+++.|+++ .+.++ ++..-. ..-+.|..++.+...|..+..++|+++.+.|||+|++||
T Consensus 314 p~~n~p~L~plvl~av~~~~~~vq~~~~~~l~~~~~gLs~gvh~~f~~~iI~~~te~L~i~~LsI~ 379 (384)
T COG5050 314 PMFNPPLLIPLVLYAVPQYSFGVQKNVVEALVWSGLGLSLGVHGMFFNDIIRCFTEWLGIYALSIK 379 (384)
T ss_pred cccChhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeccc
Confidence 9999988888544 33333 221111 122458889999999999999999999999999999998
No 6
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=99.65 E-value=5.6e-16 Score=129.70 Aligned_cols=76 Identities=41% Similarity=0.637 Sum_probs=67.3
Q ss_pred CCcCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhh
Q psy2278 60 LWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSI 139 (413)
Q Consensus 60 ~~vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~ 139 (413)
.|++||++|+.|+++++.+..+..... | +..++++++++..+|++||++|||+|++||+|+++||.+|++
T Consensus 1 ~~~~pN~iT~~~~~~~~~~~~~~~~~~-------~---~~~~~~l~~~~~~~D~~DG~lAR~~~~~S~~G~~lD~~~D~i 70 (101)
T PF01066_consen 1 FWITPNAITLLRLLLGFLAALLLLQGR-------P---LLLAALLLFLAFLLDGLDGWLARRRNQSSPFGAYLDSVADRI 70 (101)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcc-------H---HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHhHHhHHH
Confidence 378999999999999999888776432 2 357788889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy2278 140 STVFVA 145 (413)
Q Consensus 140 ~~~~~~ 145 (413)
......
T Consensus 71 ~~~~~~ 76 (101)
T PF01066_consen 71 SFVALP 76 (101)
T ss_pred HHHHHH
Confidence 998887
No 7
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=99.59 E-value=2.6e-14 Score=133.13 Aligned_cols=142 Identities=19% Similarity=0.254 Sum_probs=102.7
Q ss_pred CCCcCccHHHHHH-HHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhh
Q psy2278 59 PLWLAPNLITLAG-LIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCD 137 (413)
Q Consensus 59 P~~vaPN~ITl~g-~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D 137 (413)
-....||++|+.+ ++..+...+... +. .+..+.+++.++++..+|.+||+.|||.|+.|++|+++|+.+|
T Consensus 10 ~~~~~PN~lTl~r~~l~~~~~~~~~~---~~------~~~~~~~~~l~~~a~l~D~lDG~lAR~~~~~S~~G~~LDp~~D 80 (192)
T COG0558 10 KLGNTPNQLTLLRIFLIPLFALLLLL---PG------LGLLLLALVLFLLAALTDALDGYLARKWGQVSRFGAFLDPVAD 80 (192)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHH---hH------HHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCccchhcchhhH
Confidence 4568999999999 333333333221 11 2555677788889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHH-HHHhHHHHHHHHHHHHhhCeeeecCcCcchhHHHHHHHHHHhhhccc
Q psy2278 138 SISTVFVAIAACISVNMGEYPNWMFYQ-CFCAICLFYCAHWQTYVCGTLKFGKVDVTEAQVTIICMHMGTVLFGV 211 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~fy~~~weey~tg~l~lg~i~~tE~~~~~~~~~l~t~~~G~ 211 (413)
++.+....++++.....+ +.|.... +.-.....|++.+.+..++....|.....|+-.+..+..+.....+.
T Consensus 81 k~~~~~~l~~l~~~~~~~--~~~~~~l~l~r~~~vs~~r~~~~~~g~~~~~~~~~~gk~~t~~~~~~i~~~l~~~ 153 (192)
T COG0558 81 KLLDAALLLGLVALGPVS--PLWLAILILAREILVSYLRALAASLGGRDYVGASGRGKRKTILQMVALLLLLLGL 153 (192)
T ss_pred HHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHHhcCCceECcchhhHHHHHHHHHHHHHHHHHh
Confidence 999998888776533221 4454443 33456788999999998876666766677777666666665555554
No 8
>TIGR00560 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
Probab=99.27 E-value=9e-11 Score=108.62 Aligned_cols=132 Identities=21% Similarity=0.181 Sum_probs=81.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHH
Q psy2278 63 APNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTV 142 (413)
Q Consensus 63 aPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~ 142 (413)
.||.+|+.+++...+-..+... +..+ +.+....+.+...+....|.+||..|||.|+.|++|+++|+.+|++...
T Consensus 3 ipN~lT~~Ri~l~p~~~~~~~~--~~~~---~~~~~~~a~~l~~~a~~tD~lDG~iAR~~~~~S~~G~~LDp~aDk~~~~ 77 (182)
T TIGR00560 3 IPNWLTLFRIIALPIFILFFLE--NVLP---IQVSPFIGALLFIFAAVTDWLDGYLARKWNQVSNFGKFLDPLADKVLVL 77 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH--hccc---chhhHHHHHHHHHHHHHHHHHhHHHHHHcCCCChHHHHHHHHhhHHHHH
Confidence 4999999999765443333322 2111 1222345555566888999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHH-hHHHHHHHHHHHHhhCeeeecCcCc--chhHHHHHHH
Q psy2278 143 FVAIAACISVNMGEYPNWMFYQCFC-AICLFYCAHWQTYVCGTLKFGKVDV--TEAQVTIICM 202 (413)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~fy~~~weey~tg~l~lg~i~~--tE~~~~~~~~ 202 (413)
...++++. .|..|.|....++. -..+...+.+.+..+....-+..+. |-.|++.+..
T Consensus 78 ~~~~~l~~---~~~~p~w~~~li~~Re~~i~~~r~~~~~~g~~~~a~~~GK~kT~~q~~ai~~ 137 (182)
T TIGR00560 78 AVLIILVY---HGYVPAWFVIVIIAREIVISGLRVLAAEKKVVIAANWLGKWKTTAQMVAIGA 137 (182)
T ss_pred HHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHH
Confidence 76655543 34556776654333 2233344444443322333333443 3335554444
No 9
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=99.12 E-value=4.3e-10 Score=107.66 Aligned_cols=86 Identities=29% Similarity=0.358 Sum_probs=72.3
Q ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHH
Q psy2278 62 LAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSIST 141 (413)
Q Consensus 62 vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~ 141 (413)
..||.+|..|.++++.+......+ ++ -.+..+++++..+|.+||+.||++|.+|.+|+-+|+.+|.++.
T Consensus 10 ~~pn~iT~~~~~~G~~sI~~a~~~---------~~--~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsF 78 (234)
T COG1183 10 LLPNLITALGLFLGLLSIVAALEG---------RF--EAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVSF 78 (234)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhc---------CH--HHHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHHh
Confidence 579999999999999998876532 22 2445567788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCch
Q psy2278 142 VFVAIAACISVNMGEYP 158 (413)
Q Consensus 142 ~~~~~~~~~~~~~g~~~ 158 (413)
...+..+.+..+..+.+
T Consensus 79 gVaPA~l~y~~~~~~~~ 95 (234)
T COG1183 79 GVAPALLLYSSGLNTGP 95 (234)
T ss_pred hHHHHHHHHHHhccCCc
Confidence 99998888877766533
No 10
>PLN02558 CDP-diacylglycerol-glycerol-3-phosphate/ 3-phosphatidyltransferase
Probab=98.99 E-value=5.9e-09 Score=98.01 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=65.1
Q ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHH
Q psy2278 62 LAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSIST 141 (413)
Q Consensus 62 vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~ 141 (413)
--||.+|+.+++...+-..++ +.+ +.|....+.....+....|.+||..|||.|+.|.+|+++|..+|.+..
T Consensus 10 ~lPN~LT~~RI~liP~~~~l~--~~~------~~~~~~~A~~lf~~a~lTD~lDG~lAR~~n~~T~~G~~lDPiaDKll~ 81 (203)
T PLN02558 10 TLPTVLTLGRVAAVPLLVATF--YVD------SWWGRTATTSIFIAAAITDWLDGYLARKMKLGTAFGAFLDPVADKLMV 81 (203)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--HHh------chhHHHHHHHHHHHHHHHHHHhHHHHHHcCCCChHHHHHhHHHHHHHH
Confidence 359999999998743333322 221 122223445556688899999999999999999999999999999998
Q ss_pred HHHHHHHHHH----hcCCCchhHHH
Q psy2278 142 VFVAIAACIS----VNMGEYPNWMF 162 (413)
Q Consensus 142 ~~~~~~~~~~----~~~g~~~~~~~ 162 (413)
....+.++.. ...|.-|.|..
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~p~w~~ 106 (203)
T PLN02558 82 AAALILLCSRPLEVAVLGEVPWLFT 106 (203)
T ss_pred HHHHHHHHHhhhhhhhcCcccHHHH
Confidence 7666655431 12355566653
No 11
>KOG3240|consensus
Probab=98.93 E-value=4.1e-09 Score=96.86 Aligned_cols=106 Identities=24% Similarity=0.369 Sum_probs=81.3
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhh
Q psy2278 59 PLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDS 138 (413)
Q Consensus 59 P~~vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~ 138 (413)
+.+--||.|-....+..++++..+.. .| ..+.++.+.+..+|+.||..||+.+|+|.+|+.+|...|+
T Consensus 11 v~~~iPN~iGY~RI~laiisf~vm~~--------~p----~~~~~lY~~S~lLDAfDG~aAR~~NQ~S~fGA~LDmvTDR 78 (218)
T KOG3240|consen 11 VFLYIPNLIGYMRIVLAILSFYVMSS--------NP----TTFSVLYLLSSLLDAFDGWAARKLNQVSRFGAMLDMVTDR 78 (218)
T ss_pred eEEEecchhhHHHHHHHHHHHHHhcc--------Cc----cHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34567999999988888877765531 22 2456677888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHhHHHHHHHHHHHHhh
Q psy2278 139 ISTVFVAIAACISVNMGEYPNWMFYQCFCAICLFYCAHWQTYVC 182 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~fy~~~weey~t 182 (413)
.++..+.+.++... |.++++.. +++.....+||-+.|.
T Consensus 79 ~st~~LL~~L~~~Y-----p~~l~~fq-L~~~lDiaSHwlhm~s 116 (218)
T KOG3240|consen 79 CSTACLLVFLCQFY-----PPYLVFFQ-LSMALDIASHWLHMHS 116 (218)
T ss_pred hhhHHHHHHHHHHc-----ccHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99988877776533 33443332 3455678999998885
No 12
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=98.92 E-value=1.5e-08 Score=91.20 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHH
Q psy2278 68 TLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIA 147 (413)
Q Consensus 68 Tl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~ 147 (413)
|+.++++++.+....... . +..+++++.++..+|.+||+.||++|.+|++|+.+|+.+|.++....+..
T Consensus 1 T~~n~~~g~~ai~~~~~~-------~----~~~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vsfgvaPa~ 69 (151)
T TIGR00473 1 TMLNAFSGFLSILSLLRY-------T----IVRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFGVAPAA 69 (151)
T ss_pred ChHHHHHHHHHHHHHHHC-------c----HHHHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 678888988877765521 1 22456667788999999999999999999999999999999999988877
Q ss_pred HHHHh
Q psy2278 148 ACISV 152 (413)
Q Consensus 148 ~~~~~ 152 (413)
+....
T Consensus 70 l~~~~ 74 (151)
T TIGR00473 70 LAYSI 74 (151)
T ss_pred HHHHH
Confidence 66654
No 13
>PRK10832 phosphatidylglycerophosphate synthetase; Provisional
Probab=98.85 E-value=9.8e-09 Score=95.07 Aligned_cols=74 Identities=32% Similarity=0.503 Sum_probs=55.3
Q ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHH
Q psy2278 62 LAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSIST 141 (413)
Q Consensus 62 vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~ 141 (413)
--||.+|+.++++...-..++ +.+. .|....+.++..+....|.+||..|||.|++|++|+++|..+|.+..
T Consensus 4 ~ipN~lT~~Ri~l~P~~~~~~--~~~~------~~~~~~a~~lf~~a~~TD~lDG~iAR~~~~~S~lG~~LDPlADKll~ 75 (182)
T PRK10832 4 NIPTLLTLFRVILIPFFVLVF--YLPF------TWAPFVCALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVMV 75 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHH--HHcc------chHHHHHHHHHHHHHHHHHHhHHHHHHcCCCChHHHHHhHHHHHHHH
Confidence 359999999999764432222 2211 12224556667788999999999999999999999999999999975
Q ss_pred HH
Q psy2278 142 VF 143 (413)
Q Consensus 142 ~~ 143 (413)
..
T Consensus 76 ~~ 77 (182)
T PRK10832 76 AI 77 (182)
T ss_pred HH
Confidence 43
No 14
>PLN02794 cardiolipin synthase
Probab=98.81 E-value=2.1e-08 Score=99.60 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=59.1
Q ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHH
Q psy2278 62 LAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSIST 141 (413)
Q Consensus 62 vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~ 141 (413)
--||.+|+.++++..+...++. . .+ +..+.+.+.++...|.+||..|||.|+.|++|.++|..+|.+..
T Consensus 143 nIPNlLTl~RIlLvP~~i~~~l--~--------~~-~~~A~~lfiiAglTD~LDGyIARk~n~vS~lGk~LDPLADKllv 211 (341)
T PLN02794 143 NLPNLISISRLVSGPVIGWMIV--N--------EM-YLSAFVGLAISGASDWLDGYVARKMGINSVVGSYLDPLADKVLI 211 (341)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--H--------hh-HHHHHHHHHHHHHHHHhhHHHHHHcCCCChhHHHHhHHHHHHHH
Confidence 4599999999998765544332 1 11 23455566788999999999999999999999999999999987
Q ss_pred HHHHHHH
Q psy2278 142 VFVAIAA 148 (413)
Q Consensus 142 ~~~~~~~ 148 (413)
....+++
T Consensus 212 ~svli~L 218 (341)
T PLN02794 212 GCVALAM 218 (341)
T ss_pred HHHHHHH
Confidence 6555544
No 15
>KOG1617|consensus
Probab=98.08 E-value=4.6e-06 Score=78.56 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=71.8
Q ss_pred cCccccCCCcchhhh-hhhhHHH-HhhhCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHH-HH
Q psy2278 32 AHKYSCESNSILDAY-FQPWWNY-LTQCLPLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLCALGIF-IY 108 (413)
Q Consensus 32 ~ykYs~~d~S~l~~~-l~p~w~~-~v~~~P~~vaPN~ITl~g~~~~~~~~~l~~~~~p~~~~~~p~w~~~~~a~~l~-ly 108 (413)
++.+++..++...++ -.|-=++ +.+ ..+--||++|+..+.+.-+-..+.. ..| +-+++++| .+
T Consensus 39 r~~~~~~~~~~~r~~~s~P~~~~~l~~--kv~tiPN~Ltl~Ri~a~Pli~~lii----------~~~--~t~A~~~Fa~A 104 (243)
T KOG1617|consen 39 RNSFSGSRDSLPRQLASLPPPRPQLKS--KVLTIPNMLTLARIAATPLIGYLII----------DEN--FTAAFGLFAVA 104 (243)
T ss_pred chhhccccccCccccccCCCCcccccc--cccccchHHHHHHHhhhceeeEEEe----------ccc--ccHHHHHHHHH
Confidence 444566555555554 3333221 111 2235699999999888742222111 122 24556665 56
Q ss_pred HHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCch
Q psy2278 109 QSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYP 158 (413)
Q Consensus 109 ~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~ 158 (413)
..-|-+||-.||+.+..|-+|.++|..+|-+......+++.. .+.++-|
T Consensus 105 g~TD~lDGyIARk~~l~S~~Gs~LDPlADkvlit~~~l~m~~-~~liPvp 153 (243)
T KOG1617|consen 105 GITDLLDGYIARKMRLGSIAGSVLDPLADKVLITCLTLCMVY-ADLIPVP 153 (243)
T ss_pred HhHHHHHHHHHhhccccchhhhccChHHHHHHHHHHHHHHHh-hhccCcc
Confidence 789999999999999999999999999998877777666433 3455444
No 16
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=66.25 E-value=43 Score=33.51 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHhHHHH
Q psy2278 93 VPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQCFCAICLF 172 (413)
Q Consensus 93 ~p~w~~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f 172 (413)
.+.+...++.++..+.-.+=...=+.+||+|++.=.-.=.||-.|.++.....+++. ....|........+++++.+.+
T Consensus 115 ~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il 193 (304)
T COG0053 115 PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYIL 193 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHH
Confidence 344444555555555555556667888899988777888999999999988777777 5556643333344555555444
Q ss_pred H
Q psy2278 173 Y 173 (413)
Q Consensus 173 y 173 (413)
+
T Consensus 194 ~ 194 (304)
T COG0053 194 K 194 (304)
T ss_pred H
Confidence 3
No 17
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=52.06 E-value=42 Score=28.06 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHHHHHHhhhcCceeEEEecccccCCccCCCC
Q psy2278 357 SIYELIRFEKTVCLEICKFLNIELFRIKVLSVADNNKSKNN 397 (413)
Q Consensus 357 ~~~~~~hy~~~Vi~qic~~L~I~~F~Ik~~~~~~~~~~~~~ 397 (413)
.....+=-++.++.+..+.+.=.-|+=+++.++.++|.|+|
T Consensus 52 Gi~lMlPAav~ivWR~a~~lap~l~~~~~~~~~~s~~~k~~ 92 (96)
T PF07214_consen 52 GIGLMLPAAVNIVWRVAKGLAPLLIDRPPKSSSRSDREKKN 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHhhcCCCCccccchhhhcc
Confidence 33444555666777777766666677666666656665543
No 18
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=44.58 E-value=3e+02 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=24.8
Q ss_pred HHHHhcCCCCcccchhhhhhhhhHHHHHHHHHHH
Q psy2278 117 KQARRTQSSSPLGELFDHGCDSISTVFVAIAACI 150 (413)
Q Consensus 117 ~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~ 150 (413)
+.+|++++..=.++..|+..|.+......+++..
T Consensus 137 ~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~ 170 (299)
T PRK09509 137 WVVRKTQSQAVRADMLHYQSDVMMNGAILLALGL 170 (299)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566776666689999999999988765555443
No 19
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=43.56 E-value=2.1e+02 Score=25.26 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCC----------CCCchhHHHHHHH-HHHHHHHHhhhhhhHHHHhcC-CCCcccchhhhhh
Q psy2278 69 LAGLIVNILTSLILFWYSPDG----------ISYVPRWASFLCA-LGIFIYQSLDAVDGKQARRTQ-SSSPLGELFDHGC 136 (413)
Q Consensus 69 l~g~~~~~~~~~l~~~~~p~~----------~~~~p~w~~~~~a-~~l~ly~~lD~~DG~~ARrtg-~sSplG~l~Dh~~ 136 (413)
+..+.+.+.+..++..-..+. -.+.|...|++.+ .....|..+-....-..+++| .+++...|++..+
T Consensus 12 ~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~~~~~~~~~f~~ 91 (149)
T PF04535_consen 12 LLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLRSKLLAWFLFIL 91 (149)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhhhhhH
Confidence 344556666666665433210 1245566665554 345578888777777776665 6788999999999
Q ss_pred hhhHHHHHHHHHHHH
Q psy2278 137 DSISTVFVAIAACIS 151 (413)
Q Consensus 137 D~~~~~~~~~~~~~~ 151 (413)
|.+...+..-+.+.+
T Consensus 92 Dqv~~~ll~sa~~Aa 106 (149)
T PF04535_consen 92 DQVLAYLLFSAASAA 106 (149)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998887666554443
No 20
>KOG2877|consensus
Probab=42.67 E-value=44 Score=34.70 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCceeEEEecc
Q psy2278 345 PDRLLLYLSLIWSIYELIRFEKTVCLEICKFLNIELFRIKVL 386 (413)
Q Consensus 345 ~E~~lL~~~~v~~~~~~~hy~~~Vi~qic~~L~I~~F~Ik~~ 386 (413)
.+.+.....+.+++..+.+++-.++.+|.++++|+|++++++
T Consensus 348 ~~~~~~~~~~~~~l~v~~~f~~h~~i~i~~~l~i~~~~~~~~ 389 (389)
T KOG2877|consen 348 ALVWSTLGYLHYCLGVVLQFCRHLIIYIFEFLDIYALRISKK 389 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccceEeeccCC
Confidence 344445566668888899999999999999999999999864
No 21
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=42.19 E-value=1.8e+02 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=22.9
Q ss_pred HHHhcCCCCcccchhhhhhhhhHHHHHHHHHH
Q psy2278 118 QARRTQSSSPLGELFDHGCDSISTVFVAIAAC 149 (413)
Q Consensus 118 ~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~~~ 149 (413)
.++++++.+-..+..|+..|.+......++..
T Consensus 117 ~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~ 148 (268)
T TIGR01297 117 VGHRLGSLALRAAALHVLSDALSSVGVLIGAL 148 (268)
T ss_pred hCccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655567899999999998876655543
No 22
>KOG1580|consensus
Probab=41.84 E-value=24 Score=34.50 Aligned_cols=30 Identities=37% Similarity=0.495 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhcCCCCccc
Q psy2278 100 LCALGIFIYQSLDAVDGKQARRTQSSSPLG 129 (413)
Q Consensus 100 ~~a~~l~ly~~lD~~DG~~ARrtg~sSplG 129 (413)
+.+.+.|..-+.|..|||-|..+...-|+-
T Consensus 299 lgtvlVF~aL~~D~~~GK~a~~t~akkp~~ 328 (337)
T KOG1580|consen 299 LGTVLVFSALTADVVDGKKAPMTAAKKPLA 328 (337)
T ss_pred HHHHHHHHHhhhHhhcCCcCccccccCCCc
Confidence 677788999999999999999888777753
No 23
>PRK03557 zinc transporter ZitB; Provisional
Probab=29.22 E-value=4.8e+02 Score=25.95 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=28.4
Q ss_pred HhcCCCCcccchhhhhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHhHHHHH
Q psy2278 120 RRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQCFCAICLFY 173 (413)
Q Consensus 120 Rrtg~sSplG~l~Dh~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~fy 173 (413)
|+.+++.-.+...|+..|.++.+...++.....-.|..+......++++.+..+
T Consensus 146 ~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~~g~~~~Dpi~~ilis~~i~~ 199 (312)
T PRK03557 146 SEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPILSILVSVLVLR 199 (312)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 334444445788999999988775544443322234332333344444444443
No 24
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=24.35 E-value=3.2e+02 Score=27.28 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=37.5
Q ss_pred CCcchhhhhhhhHHHHhhhCCCCcCccHHHHHHHHHHHH-------HHHHHHHHcCCCCCCchhHHHHHHHHHHHHHH-H
Q psy2278 39 SNSILDAYFQPWWNYLTQCLPLWLAPNLITLAGLIVNIL-------TSLILFWYSPDGISYVPRWASFLCALGIFIYQ-S 110 (413)
Q Consensus 39 d~S~l~~~l~p~w~~~v~~~P~~vaPN~ITl~g~~~~~~-------~~~l~~~~~p~~~~~~p~w~~~~~a~~l~ly~-~ 110 (413)
+.+++.|.++|..+.+-+ |=++=.+|+++++. +.+.+. .....+..|.|..++..++.-..+ .
T Consensus 124 ~rG~~~Rll~~lf~~v~~-------pw~mypvG~LFGLGFDTATEIaLL~is--a~~a~~g~~~~~il~lP~LFtaGM~L 194 (280)
T TIGR00802 124 NRGLLTRLLGPLFRLVTK-------SWHMYPVGFLFGLGFDTATEVALLGLS--ASAAARGLSIAAVLSLPVLFAAGMAL 194 (280)
T ss_pred ccCcHHHHHHHHHHHhcC-------chHHHHHHHHHHcccchHHHHHHHHHH--HHHhccCCChHHHHHHHHHHHhhhHH
Confidence 347788888887764332 33344456666531 111111 111122467776555444433333 4
Q ss_pred hhhhhhHHHH
Q psy2278 111 LDAVDGKQAR 120 (413)
Q Consensus 111 lD~~DG~~AR 120 (413)
.|.+||-.-.
T Consensus 195 ~DT~Dg~lM~ 204 (280)
T TIGR00802 195 FDTADSLFMV 204 (280)
T ss_pred hcCccHHHHH
Confidence 8999987543
No 25
>COG4244 Predicted membrane protein [Function unknown]
Probab=22.42 E-value=6.1e+02 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhhHHHHhc
Q psy2278 92 YVPRWASFLCALGIFIYQSLDAVDGKQARRT 122 (413)
Q Consensus 92 ~~p~w~~~~~a~~l~ly~~lD~~DG~~ARrt 122 (413)
+...|....+.+..++....+-.|+-.|||-
T Consensus 49 ~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~ 79 (160)
T COG4244 49 DVSWWNLFAALIAGFFAVIAGLFEFLLARPG 79 (160)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4556666677777889999999999999993
Done!