Query psy2278
Match_columns 413
No_of_seqs 208 out of 1579
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 18.0 25 0.00084 33.0 -0.2 48 98-145 111-158 (283)
2 2jvw_A Uncharacterized protein 11.9 28 0.00095 27.3 -1.3 26 362-390 26-51 (88)
3 3o6q_B Stage II sporulation pr 11.6 25 0.00086 25.1 -1.5 19 395-413 28-46 (56)
4 3j1z_P YIIP, cation efflux fam 10.0 79 0.0027 30.0 0.8 32 116-147 138-169 (306)
5 1bh9_B TAFII28; histone fold, 8.9 1.6E+02 0.0054 23.0 2.1 47 22-75 1-47 (89)
6 3abd_X REV3, HREV3, DNA polyme 8.0 74 0.0025 22.1 -0.2 23 386-409 11-33 (52)
7 2bn5_A PSI; nuclear protein, s 7.7 1.4E+02 0.0048 19.1 1.0 12 172-183 3-14 (33)
8 2ezd_A High mobility group pro 7.2 2.2E+02 0.0076 17.1 1.6 17 384-400 3-20 (26)
9 2ki0_A DS119; beta-alpha-beta, 6.2 1.9E+02 0.0066 18.2 1.1 11 23-33 13-23 (36)
10 1ter_A Tertiapin; toxin; NMR { 5.8 81 0.0028 18.6 -0.8 10 309-318 6-15 (26)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=17.99 E-value=25 Score=32.99 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHHHH
Q psy2278 98 SFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVA 145 (413)
Q Consensus 98 ~~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~~~ 145 (413)
.+++++++.+...+=..-.+.+|++++..-.+...|+..|.++.....
T Consensus 111 l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vl 158 (283)
T 3h90_A 111 VIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAIL 158 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333332334567788887777899999999998876433
No 2
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=11.95 E-value=28 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHhHHHHHHHHhhhcCceeEEEecccccC
Q psy2278 362 IRFEKTVCLEICKFLNIELFRIKVLSVAD 390 (413)
Q Consensus 362 ~hy~~~Vi~qic~~L~I~~F~Ik~~~~~~ 390 (413)
-||++. ++.+.++|+||+-.|...++
T Consensus 26 ~~YGW~---~L~~~i~I~CF~~~PSikSS 51 (88)
T 2jvw_A 26 EHYGWE---ELSYMVNINCFKKDPSIKSS 51 (88)
T ss_dssp HHTCHH---HHHHHTTSSSTTSSCCHHHH
T ss_pred HHhCHH---HHHhhcccccCCCCCchHHH
Confidence 355555 57788999999998866554
No 3
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=11.62 E-value=25 Score=25.10 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.2
Q ss_pred CCCCCCCccccchhhccCC
Q psy2278 395 KNNQNFNPNTKRILRSNKR 413 (413)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~ 413 (413)
-.+--+.|-|.||++.|+|
T Consensus 28 ~~~y~vSPhT~rIfK~Ner 46 (56)
T 3o6q_B 28 VASYQVSPHTARIFKENER 46 (56)
T ss_dssp ECCCCCCHHHHHHHHHHHH
T ss_pred ccccccChhHHHHHHHhHH
Confidence 3456689999999999875
No 4
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=9.98 E-value=79 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=22.5
Q ss_pred hHHHHhcCCCCcccchhhhhhhhhHHHHHHHH
Q psy2278 116 GKQARRTQSSSPLGELFDHGCDSISTVFVAIA 147 (413)
Q Consensus 116 G~~ARrtg~sSplG~l~Dh~~D~~~~~~~~~~ 147 (413)
-+.+|++++..-.+...|+..|.+......++
T Consensus 138 ~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~ 169 (306)
T 3j1z_P 138 KRALAATNSTVVEADSLHYKSDLFLNAAVLLA 169 (306)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCT
T ss_pred HHhccccCCHHHHHHHHhhcchhhhhhHHHHH
Confidence 34556666666678999999999887654443
No 5
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=8.92 E-value=1.6e+02 Score=23.04 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred CCHHHHHHhhcCccccCCCcchhhhhhhhHHHHhhhCCCCcCccHHHHHHHHHH
Q psy2278 22 LNNKQLKRLGAHKYSCESNSILDAYFQPWWNYLTQCLPLWLAPNLITLAGLIVN 75 (413)
Q Consensus 22 ls~~~l~~L~~ykYs~~d~S~l~~~l~p~w~~~v~~~P~~vaPN~ITl~g~~~~ 75 (413)
+|+||+++-..|+=++-.++- .+.+.+.+. -..+.+|++..+|.+.=
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~----vKrl~~~~~---~~~v~~~v~i~v~glaK 47 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAA----IKRLIQSIT---GTSVSQNVVIAMSGISK 47 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHH----HHHHHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHc---CCCCCccHHHHHHHHHH
Confidence 588999999888877544333 344444333 44677888877655443
No 6
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=8.03 E-value=74 Score=22.09 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=4.8
Q ss_pred ccccCCccCCCCCCCCccccchhh
Q psy2278 386 LSVADNNKSKNNQNFNPNTKRILR 409 (413)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.+-.+-.|+|+| ++.|.+.+||+
T Consensus 11 rSi~S~SQ~k~~-~~t~~~~~ILK 33 (52)
T 3abd_X 11 RSTSSPSQSKNG-SFTPRTANILK 33 (52)
T ss_dssp ------------------CTTEEE
T ss_pred cccCCHHHhhcc-CCCCCcccccc
Confidence 344455678887 78888888875
No 7
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=7.73 E-value=1.4e+02 Score=19.14 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhC
Q psy2278 172 FYCAHWQTYVCG 183 (413)
Q Consensus 172 fy~~~weey~tg 183 (413)
-|..+|.||+..
T Consensus 3 DYSaQW~eYYrs 14 (33)
T 2bn5_A 3 DYSAQWAEYYRS 14 (33)
T ss_dssp TTHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 477899999863
No 8
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=7.23 E-value=2.2e+02 Score=17.10 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=10.5
Q ss_pred ecccccCCcc-CCCCCCC
Q psy2278 384 KVLSVADNNK-SKNNQNF 400 (413)
Q Consensus 384 k~~~~~~~~~-~~~~~~~ 400 (413)
+|++-+.|++ |||-.+-
T Consensus 3 tpKrpRgRpkGSKNk~~~ 20 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGAA 20 (26)
T ss_dssp SCCCCSSCCTTCCCCSCC
T ss_pred CCcCCCCCcCcccccCcc
Confidence 4566666666 7776543
No 9
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=6.20 E-value=1.9e+02 Score=18.20 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=9.1
Q ss_pred CHHHHHHhhcC
Q psy2278 23 NNKQLKRLGAH 33 (413)
Q Consensus 23 s~~~l~~L~~y 33 (413)
+||+|++||+-
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 78999998864
No 10
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=5.80 E-value=81 Score=18.60 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=7.8
Q ss_pred hhhhhhhhcC
Q psy2278 309 NRLVVAHMSK 318 (413)
Q Consensus 309 ~rlIvahmtk 318 (413)
.|+|+-|||=
T Consensus 6 nriiiphmcw 15 (26)
T 1ter_A 6 NRIIIPHMCW 15 (26)
T ss_dssp TSSSCCHHHH
T ss_pred CcEechhHHH
Confidence 5788889883
Done!