Query psy2278
Match_columns 413
No_of_seqs 208 out of 1579
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 20:36:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x9ya2 d.17.1.4 (A:41-211) St 11.4 55 0.004 26.3 2.2 24 378-401 72-95 (171)
2 d1bh9b_ a.22.1.3 (B:) TAF(II)2 10.1 89 0.0065 22.7 2.9 47 22-75 1-47 (89)
3 d1texa_ c.37.1.5 (A:) Stf0 sul 9.6 41 0.003 26.6 0.9 16 366-381 217-232 (265)
4 d1jnda2 d.26.3.1 (A:279-370) I 8.7 67 0.0049 23.5 1.7 9 392-400 82-90 (92)
5 d1jida_ d.201.1.1 (A:) SRP19 { 5.1 2.7E+02 0.019 20.7 3.6 16 368-383 44-59 (114)
6 d2a5yb1 a.4.5.80 (B:386-543) C 4.6 74 0.0054 24.3 -0.2 25 108-132 35-59 (158)
7 d1d1da1 a.28.3.1 (A:151-230) R 4.1 89 0.0065 22.2 -0.1 14 397-410 44-57 (80)
8 d1zcha1 d.90.1.1 (A:1-249) Hyp 3.8 2.4E+02 0.017 23.2 2.7 30 1-32 1-32 (249)
9 d2fbqa2 a.121.1.1 (A:81-214) T 3.7 4.7E+02 0.034 19.1 4.3 58 86-143 69-127 (134)
10 d1uura2 b.2.5.5 (A:360-576) ST 3.6 4.2E+02 0.031 21.5 3.9 46 9-56 163-209 (217)
No 1
>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus aureus [TaxId: 1280]}
Probab=11.41 E-value=55 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.5
Q ss_pred ceeEEEecccccCCccCCCCCCCC
Q psy2278 378 IELFRIKVLSVADNNKSKNNQNFN 401 (413)
Q Consensus 378 I~~F~Ik~~~~~~~~~~~~~~~~~ 401 (413)
+++.||.|+...|-++||++++..
T Consensus 72 ~YvvTiSPK~~~d~n~sk~~~nYs 95 (171)
T d1x9ya2 72 VYTLTLSPKNKDDLNKSKEDMNYS 95 (171)
T ss_dssp EEEEEEEECSGGGGGSCTTTSCEE
T ss_pred EEEEEeCCCCCCchhhhhhcccce
Confidence 578899999999999999888743
No 2
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.09 E-value=89 Score=22.71 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCHHHHHHhhcCccccCCCcchhhhhhhhHHHHhhhCCCCcCccHHHHHHHHHH
Q psy2278 22 LNNKQLKRLGAHKYSCESNSILDAYFQPWWNYLTQCLPLWLAPNLITLAGLIVN 75 (413)
Q Consensus 22 ls~~~l~~L~~ykYs~~d~S~l~~~l~p~w~~~v~~~P~~vaPN~ITl~g~~~~ 75 (413)
.|++|+++.+.|+=++-.++-+ +.+.+.+. -..+.||+++.++.+.=
T Consensus 1 Fs~eQ~~RyE~fRRs~~~K~~v----krl~~~~~---g~sv~~~v~i~v~giaK 47 (89)
T d1bh9b_ 1 FSEEQLNRYEMYRRSAFPKAAI----KRLIQSIT---GTSVSQNVVIAMSGISK 47 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHH----HHHHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH----HHHHHHHc---CCCCChhHHHHHHHHHH
Confidence 4899999999998777554443 44443333 45688998877665554
No 3
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]}
Probab=9.55 E-value=41 Score=26.57 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=13.4
Q ss_pred HHHHHHHhhhcCceeE
Q psy2278 366 KTVCLEICKFLNIELF 381 (413)
Q Consensus 366 ~~Vi~qic~~L~I~~F 381 (413)
-.++.+||++||+..-
T Consensus 217 ~~~~~~I~~fLgl~~~ 232 (265)
T d1texa_ 217 TEVVGTVLEALGQDPR 232 (265)
T ss_dssp HHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhCcCcc
Confidence 4699999999999743
No 4
>d1jnda2 d.26.3.1 (A:279-370) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.70 E-value=67 Score=23.45 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=6.0
Q ss_pred ccCCCCCCC
Q psy2278 392 NKSKNNQNF 400 (413)
Q Consensus 392 ~~~~~~~~~ 400 (413)
+++.+||||
T Consensus 82 ~~~~~~qWV 90 (92)
T d1jnda2 82 GQITEGIWV 90 (92)
T ss_dssp TTBCCCEEE
T ss_pred CCCcCCEee
Confidence 445678886
No 5
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.08 E-value=2.7e+02 Score=20.69 Aligned_cols=16 Identities=13% Similarity=0.424 Sum_probs=13.0
Q ss_pred HHHHHhhhcCceeEEE
Q psy2278 368 VCLEICKFLNIELFRI 383 (413)
Q Consensus 368 Vi~qic~~L~I~~F~I 383 (413)
=|.+.|..||++|..-
T Consensus 44 EI~~a~~~lgl~~~~E 59 (114)
T d1jida_ 44 EIQDVCSAVGLNVFLE 59 (114)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEe
Confidence 4678899999999943
No 6
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.57 E-value=74 Score=24.28 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHhhhhhhHHHHhcCCCCcccchh
Q psy2278 108 YQSLDAVDGKQARRTQSSSPLGELF 132 (413)
Q Consensus 108 y~~lD~~DG~~ARrtg~sSplG~l~ 132 (413)
+.--|.+|.++|.|.+.-|..|+++
T Consensus 35 snee~qlddevadrlkrlskrgall 59 (158)
T d2a5yb1 35 SNEEEQLDDEVADRLKRLSKRGALL 59 (158)
T ss_dssp ----CCCTHHHHHHHHHTTTBSSCS
T ss_pred CChHhhhhHHHHHHHHHHHhccchh
Confidence 4557999999999999888888865
No 7
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=4.07 E-value=89 Score=22.17 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=10.4
Q ss_pred CCCCCccccchhhc
Q psy2278 397 NQNFNPNTKRILRS 410 (413)
Q Consensus 397 ~~~~~~~~~~~~~~ 410 (413)
-||-||..|.|||+
T Consensus 44 ~qNANpdCk~iLra 57 (80)
T d1d1da1 44 RQKSQPDIQQLIRA 57 (80)
T ss_dssp TTSSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHh
Confidence 36777888888876
No 8
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}
Probab=3.78 E-value=2.4e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=20.3
Q ss_pred CccchhhH--hhhhccCCCCCCCCCHHHHHHhhc
Q psy2278 1 MNEVFSLA--MRFDMLHFTSSPILNNKQLKRLGA 32 (413)
Q Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~ls~~~l~~L~~ 32 (413)
|||+...- ||+ ...+..+.+++|+++.+-+
T Consensus 1 MNd~ie~i~~RRS--iR~F~~~pV~~e~i~~il~ 32 (249)
T d1zcha1 1 MNEVIKSLTDHRS--IRSYTDEPVAQEQLDQIIE 32 (249)
T ss_dssp CCHHHHHHHTCCC--CCCBCSCCCCHHHHHHHHH
T ss_pred ChHHHHHHHHCcc--cccCCCCCCCHHHHHHHHH
Confidence 88877653 444 2334458999999998844
No 9
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.72 E-value=4.7e+02 Score=19.13 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=31.9
Q ss_pred cCCCCCCchhHHH-HHHHHHHHHHHHhhhhhhHHHHhcCCCCcccchhhhhhhhhHHHH
Q psy2278 86 SPDGISYVPRWAS-FLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVF 143 (413)
Q Consensus 86 ~p~~~~~~p~w~~-~~~a~~l~ly~~lD~~DG~~ARrtg~sSplG~l~Dh~~D~~~~~~ 143 (413)
.|+...+.-.|-+ +..+.+++...--|.++..-....++.+...++.||..+-++..+
T Consensus 69 lP~l~~~el~wr~~f~vga~~~~l~~~~~~~~l~~~~~~~~~d~e~~~~~Li~F~~aGl 127 (134)
T d2fbqa2 69 APKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFGVNTSTEQVMHLMVPFFAAGM 127 (134)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHcchHHHHhcccccCCCCCHHHHHHHHHHHHHHHh
Confidence 4655444444532 222333333333455555544456666778888888887665543
No 10
>d1uura2 b.2.5.5 (A:360-576) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}
Probab=3.57 E-value=4.2e+02 Score=21.52 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=35.1
Q ss_pred hhhhccCCCCCCCCCHHHHHHhhcCccccCCCcchhhh-hhhhHHHHhh
Q psy2278 9 MRFDMLHFTSSPILNNKQLKRLGAHKYSCESNSILDAY-FQPWWNYLTQ 56 (413)
Q Consensus 9 ~~~~~~~~~~~~~ls~~~l~~L~~ykYs~~d~S~l~~~-l~p~w~~~v~ 56 (413)
++-+|.--+-.|+|+.-+++.+.++-+-+ ++.++.- ...||.|.=+
T Consensus 163 ~AT~Q~~~~p~R~Ls~~e~~Yi~~~fFg~--k~~v~~~~fdsFW~wFGk 209 (217)
T d1uura2 163 IATKQDPVRPKRPLSSYDLKYIQTHFFGN--RSIIHQQDFDKFWVWFGK 209 (217)
T ss_dssp HHTTCCSSSCSSCCCHHHHHHHHHHTTTT--CSEEEHHHHHHHHHHHHH
T ss_pred hhhccCccccCcccchhhhhhhhhhhcCC--ccccchhHhhHHHHHhch
Confidence 34445555667899999999998777755 7888888 8999988643
Done!