RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2278
(413 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 44/267 (16%), Positives = 80/267 (29%), Gaps = 86/267 (32%)
Query: 181 VCGTLKFGK----VDVTEAQVTIICMHMGTVLFGVEFWQYKLFYKFEMRYIIGLMTI-VC 235
+ G L GK +DV + M F + FW + + C
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMD-----FKI-FW----------------LNLKNC 192
Query: 236 CSITLRYMIEVILTCGAGKNGSTVADTSVLSPIIP------LSLFMGPAIY---LKVVSP 286
S + L N ++ +D S + L + Y L V+
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL- 251
Query: 287 HLYEQNPV--------IFILT-----FGLVAARTTNRLVVAHMSKSEMCYTDSSMLGPLA 333
++ I + T ++A TT + + H S + T + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLL 308
Query: 334 LVLNCYFNNILPDRLL----LYLSLI----------WSIYELIRFEKT-----VCLEICK 374
L+C + LP +L LS+I W ++ + +K L + +
Sbjct: 309 KYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 375 -------FLNIELFR------IKVLSV 388
F + +F +LS+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSL 394
Score = 29.1 bits (64), Expect = 3.4
Identities = 29/173 (16%), Positives = 50/173 (28%), Gaps = 37/173 (21%)
Query: 6 SLAMRFD-----MLHFTSSPILN----NKQLKRLGAHKYSCESNSILDAYFQPW-WNYLT 55
L + D +S+ L +L+RL K +L WN
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 56 -QCLPLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLC--ALGIFIYQSLD 112
C L L T + + L++ + IS + + + + LD
Sbjct: 264 LSCKIL-----LTTRFKQVTDFLSAA-----TTTHISLDHHSMTLTPDEVKSLLL-KYLD 312
Query: 113 AVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMFYQC 165
R +++P +S IA I + + NW C
Sbjct: 313 CRPQDLPREVLTTNPR---------RLSI----IAESIRDGLATWDNWKHVNC 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.006
Identities = 46/253 (18%), Positives = 74/253 (29%), Gaps = 95/253 (37%)
Query: 7 LAMRFDMLHFTSSPILNNKQLKRLGAH--KYSCES-NSILDA-YFQPWWNYLTQCLPLWL 62
AM F+ + K K + H Y+ S +L A F TQ
Sbjct: 1689 SAMIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-------TQ------ 1733
Query: 63 APNLITLAGLIVNILTSLILFWYSPDGISYVPRWASF----------LCAL-GIFIYQSL 111
P L + L S G+ +P A+F L +L + S+
Sbjct: 1734 -PALTLMEKAAFEDLKS--------KGL--IPADATFAGHSLGEYAALASLADVM---SI 1779
Query: 112 -DAVD-----GKQARRTQSSSPLGEL--FDHGC-----DSISTVFV-----AIAACISVN 153
V+ G Q + P EL ++G ++ F + +
Sbjct: 1780 ESLVEVVFYRGMTM---QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 154 MGEYPNWMFYQCFCAICLFYCAHWQTYVC-GT-------------LKFGKVDVTEAQVTI 199
G I + + Q YV G +K K+D+ E Q +
Sbjct: 1837 TGW---------LVEIVNYNVENQQ-YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS- 1885
Query: 200 ICMHMGTV---LF 209
+ + V LF
Sbjct: 1886 --LSLEEVEGHLF 1896
Score = 35.4 bits (81), Expect = 0.036
Identities = 51/337 (15%), Positives = 93/337 (27%), Gaps = 126/337 (37%)
Query: 52 NYLTQC-----LPLWLAPNLITLAGLIVNILTSLILFWYSPDGISYVPRWASFLC----A 102
+Y+ P L L G ++T++ I+ W SF A
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--------IAETDSWESFFVSVRKA 299
Query: 103 LGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGCDSISTVFVAIAACISVNMGEYPNWMF 162
+ + + + R + P L S + + N G P+ M
Sbjct: 300 ITVLFFIGV---------RCYEAYPNTSL------PPSIL----EDSLENNEGV-PSPML 339
Query: 163 YQCFCAICLFYCAHWQTYVCGTLKFGKVDVTEAQVTIICMHMGTVLFGVEFWQYKLFYKF 222
+ L +V + V H+
Sbjct: 340 -----------------SISN-LTQEQV---QDYVNKTNSHLP----------------- 361
Query: 223 EMRYIIGLMTIVCCSITLRYMIEVILTCGAGKNGSTVADTSVLS-PIIPLSLFMGPAIYL 281
+ + I+L NG A V+S P P SL+ G + L
Sbjct: 362 AGKQV---------EISLV-------------NG---AKNLVVSGP--PQSLY-GLNLTL 393
Query: 282 -KVVSPHLYEQN--P-----VIFILTFGLVAA-------RTTNRLVVAHMSKSEMCYTDS 326
K +P +Q+ P + F F VA+ + L+ + K+ + +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 327 SMLGPL-----ALVLNCYFNNILPD--RLLLYLSLIW 356
+ P+ L +I ++ L + W
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 34.6 bits (79), Expect = 0.070
Identities = 41/225 (18%), Positives = 63/225 (28%), Gaps = 90/225 (40%)
Query: 254 KNGSTVADTSVLSPIIPLSLFMGPAIYLK-----VVSPHLYEQNPVIFILTF-------- 300
+N S D L IP+S P I + VV+ L P
Sbjct: 220 ENPSNTPDKDYLL-SIPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 301 GLVAARTTNRLVVAHMSKSEMCYTD----------------------------------- 325
GLV A + +A + S +
Sbjct: 276 GLVTA-----VAIA-ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 326 ------SSML---GPLALVLNCY---FNNILPDRLLLYLSLIWSIYELIRFEKTVC---- 369
S ML + Y N+ LP + +SL+ L+ V
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-----VSGPPQ 384
Query: 370 -LEICKFLNIELFRIKVLSVADNNKSKNNQNFNPNTKRILRSNKR 413
L LN+ L + K S +Q+ P ++R L+ + R
Sbjct: 385 SLYG---LNLTLRKAKA-------PSGLDQSRIPFSERKLKFSNR 419
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.51
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 12/28 (42%)
Query: 78 TSLILFWYSPDGISYVPRWASFLCALGI 105
SL L Y+ D P AL I
Sbjct: 27 ASLKL--YADDS---AP-------ALAI 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 1.3
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 31 GAHKYSCESNSILDAYFQPW----W-NYLTQCLPL--W 61
G YS ES L+ F W W N LT C + W
Sbjct: 638 GM--YS-ESKLSLETLFNRWHSESWANQLTVCGAIIGW 672
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 29.0 bits (64), Expect = 2.5
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 354 LIWSIYELIRFEKTVCLEICKFLNIELFRIKVLSVADNNKSKNNQNFNPNTKRILRSNK 412
+ LI + KFLN+ + + + FN + L +K
Sbjct: 185 HVVDGDRLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNEIFNKCLAGSK 243
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit,
alpha/beta family, LEFT-handed crossover, fungal TOXI;
1.75A {Ustilago maydis} SCOP: d.70.1.1
Length = 105
Score = 26.5 bits (58), Expect = 6.6
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 84 WYSPDGISYVPRWASFLCALGIFIYQSLDAVDGKQARRTQSSSPLGELFDHGC 136
W + + V + + A ++ + + + G +A R L L +HGC
Sbjct: 34 WCPGERRAKVCGTGNSISA---YVQSTNNCISGTEACRH-----LTNLVNHGC 78
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 27.4 bits (60), Expect = 7.3
Identities = 9/60 (15%), Positives = 17/60 (28%)
Query: 354 LIWSIYELIRFEKTVCLEICKFLNIELFRIKVLSVADNNKSKNNQNFNPNTKRILRSNKR 413
I LIR ++ +FL + + K + + + S R
Sbjct: 175 HIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGR 234
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying
enzyme, topological knot; 1.85A {Aquifex aeolicus}
Length = 211
Score = 27.2 bits (61), Expect = 8.0
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 310 RLVVAHMSKSEMCYTDSSMLGPLALVL 336
++V +SK + + + P LV+
Sbjct: 99 QIVATWLSKESVNFREVDYTKPTVLVV 125
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural
genomics/proteomics INIT RSGI, structural genomics; HET:
SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Length = 194
Score = 27.1 bits (61), Expect = 8.3
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 310 RLVVAHMSKSEMCYTDSSMLGPLALVL 336
+ + + + + P A++
Sbjct: 95 TVYATALREDARDFREVDYTKPTAVLF 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.451
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,281,348
Number of extensions: 366977
Number of successful extensions: 789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 16
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.2 bits)