RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2278
         (413 letters)



>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
           central and FMN domains {Synechocystis sp. [TaxId:
           1143]}
          Length = 809

 Score = 32.6 bits (74), Expect = 0.086
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 13/55 (23%)

Query: 2   NEVFSLAMRF----DMLHFTS---------SPILNNKQLKRLGAHKYSCESNSIL 43
           N V SLAM      ++L   +         SP++N  +L+ +   +      S L
Sbjct: 83  NLVMSLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEVSTL 137


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 29.5 bits (66), Expect = 0.86
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 2   NEVFSLAMRF----DMLHFTS---------SPILNNKQLKRLGAHKYSCESNSILDAYFQ 48
             V SL  R     ++L             SP+L   + + +  +    ++ + +DA F 
Sbjct: 95  RRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMRDYMG--DTAAEIDATFP 152

Query: 49  PWWN 52
               
Sbjct: 153 VDGG 156


>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
           flavocytochrome cellobiose dehydrogenase (CDH),
           FAD-binding domain {Fungus (Phanerochaete chrysosporium)
           [TaxId: 5306]}
          Length = 360

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 20/129 (15%)

Query: 129 GELFDHGCDSISTVFVAIAACISVNMGEYPN----WMFYQCFCAICLFYCAHWQTYVCGT 184
           G+ +     ++ +  +         + + PN       Y  F  +         TY+   
Sbjct: 141 GQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTA 200

Query: 185 LKFGKVD-VTEAQVTIICMHMGTVLFGVEFWQYKLFYKFEMRYIIGLMTIVCCSITLRYM 243
           L        T   V+ +  +   +L GV+                         I +   
Sbjct: 201 LARPNFTFKTNVMVSNVVRNGSQIL-GVQTNDPT--------------LGPNGFIPVTPK 245

Query: 244 IEVILTCGA 252
             VIL+ GA
Sbjct: 246 GRVILSAGA 254


>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 119

 Score = 25.7 bits (56), Expect = 6.1
 Identities = 4/46 (8%), Positives = 14/46 (30%)

Query: 178 QTYVCGTLKFGKVDVTEAQVTIICMHMGTVLFGVEFWQYKLFYKFE 223
           + +     +    D+ +++      ++      + F   KL     
Sbjct: 57  REFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALS 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,579,017
Number of extensions: 73764
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 15
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.1 bits)