BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2279
(830 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFS|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
pdb|3PFS|B Chain B, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 3
Length = 158
Score = 149 bits (377), Expect = 4e-36, Method: Composition-based stats.
Identities = 68/116 (58%), Positives = 87/116 (75%), Gaps = 5/116 (4%)
Query: 716 FEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANNYT----EPV 770
E L+LVWAKCRGYP YPALII+P+MP G +HNGVPIP PP DVL L E +
Sbjct: 37 LEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKL 96
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVH 826
+LVLFFD KRTWQWLPR+K+ PLG+ D +D++K++E RK + RK+V+ AY A++H
Sbjct: 97 FLVLFFDNKRTWQWLPRDKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIH 152
>pdb|3L42|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger Containing
Protein 1
pdb|3MO8|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 1 In Complex With Trimethylated H3k36 Peptide
Length = 130
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 84/118 (71%), Gaps = 5/118 (4%)
Query: 716 FEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANNYT----EPV 770
+ L LVWAKCRGYP YPALII+P+MP G H+GVPIP PP +VL L T E +
Sbjct: 6 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHL 65
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828
YLVLFFD KRTWQWLPR KL PLG+ +LD+ K++E RK RK+V+ AY AL H++
Sbjct: 66 YLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRS 123
>pdb|2X35|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4W|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|I Chain I, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|K Chain K, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|M Chain M, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|O Chain O, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 132
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 84/118 (71%), Gaps = 5/118 (4%)
Query: 716 FEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANNYT----EPV 770
+ L LVWAKCRGYP YPALII+P+MP G H+GVPIP PP +VL L T E +
Sbjct: 10 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHL 69
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828
YLVLFFD KRTWQWLPR KL PLG+ +LD+ K++E RK RK+V+ AY AL H++
Sbjct: 70 YLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRS 127
>pdb|3LYI|A Chain A, Pwwp Domain Of Human Bromodomain-Containing Protein 1
pdb|3LYI|B Chain B, Pwwp Domain Of Human Bromodomain-Containing Protein 1
Length = 126
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 85/118 (72%), Gaps = 7/118 (5%)
Query: 715 TFEQLQLVWAKCRGYPWYPALIINPQMPL--GYIHNGVPIPSPPEDVLALANNYT----E 768
E L++VWAKC GYP YPALII+P+MP G+ HNGV IP+PP DVL + + E
Sbjct: 3 VLEPLKVVWAKCSGYPSYPALIIDPKMPRVPGH-HNGVTIPAPPLDVLKIGEHMQTKSDE 61
Query: 769 PVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVH 826
++LVLFFD KR+WQWLP++K+ PLGI + +D++K+ME R + RKAV+ A+ A+ H
Sbjct: 62 KLFLVLFFDNKRSWQWLPKSKMVPLGIDETIDKLKMMEGRNSSIRKAVRIAFDRAMNH 119
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 116 bits (291), Expect = 4e-26, Method: Composition-based stats.
Identities = 50/96 (52%), Positives = 70/96 (72%)
Query: 481 KARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENC 540
+ +DTG+IF EPV + EVPDY D IK+PMD TM ++A +YL+ +DFE DFNL+V NC
Sbjct: 20 QEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNC 79
Query: 541 LTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAG 576
L YN KDTIFY+A +++++ GGA++ QA + G
Sbjct: 80 LKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG 115
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger
Length = 87
Score = 116 bits (291), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 239 IPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIRDHSGVEPVV 298
IP ARWKLTCY+CKQ+GVGA IQCHK NCY AFHVTCAQ+AGLYM M+ +++ +G
Sbjct: 11 IPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTF 70
Query: 299 -VQKLAYCDAHTPP 311
V+K AYCD HTPP
Sbjct: 71 SVRKTAYCDVHTPP 84
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 112 bits (280), Expect = 8e-25, Method: Composition-based stats.
Identities = 47/60 (78%), Positives = 53/60 (88%)
Query: 129 QDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSR 188
Q +ID++AVC IC DGE QNSNVILFCDMCNLAVHQ+CYGVPYIPEGQWLCR CL + +R
Sbjct: 10 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 69
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/58 (79%), Positives = 52/58 (89%)
Query: 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSR 188
+ID++AVC IC DGE QNSNVILFCDMCNLAVHQ+CYGVPYIPEGQWLCR CL + +R
Sbjct: 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 483 RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542
+D IF +PV + EVPDY D IK PMD TM +++A Y +L +FE DF+L+++NC+
Sbjct: 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMK 87
Query: 543 YNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQI-GSILPGTSA 589
YN +DT+FY+A ++++ GG ++ QA + ++ G ++ G LP A
Sbjct: 88 YNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERPA 135
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 483 RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542
+D F PV P Y+ +IK PMD TM +K+ AN+Y S+ +F+ DF LM +N +T
Sbjct: 28 KDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMT 87
Query: 543 YNEKDTIFYKAGIKMKQVGGALINQ 567
YN DT++YK K+ G ++++
Sbjct: 88 YNRPDTVYYKLAKKILHAGFKMMSK 112
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 483 RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542
+D F PV P Y+ +IK PMD +TM K+K N Y S+E+ +++F LM N +
Sbjct: 23 KDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82
Query: 543 YNEKDTIFYKAGIKMKQVGGALINQ 567
YN+ +TI+YKA K+ G +++Q
Sbjct: 83 YNKPETIYYKAAKKLLHSGMKILSQ 107
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FL+PV+ EVPDY D IK+PMDL+TM K+++N+Y +EDF D L+ NC YN ++T
Sbjct: 34 FLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENT 93
Query: 549 IFYKAGIKMKQV 560
+YK ++++
Sbjct: 94 SYYKYANRLEKF 105
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FL PV++ VP Y VIK+PMD +T+ K+ + QY +LE F D L+ +NC T+NE D+
Sbjct: 34 FLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 93
Query: 549 IFYKAGIKMKQ 559
+AG M++
Sbjct: 94 DIGRAGHNMRK 104
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 488 IFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547
+F +PVD EVPDY VIKQPMDL+++ +K+ ++YL+++D+ D +L+ N L YN
Sbjct: 30 VFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD- 88
Query: 548 TIFYKAGIKMKQVGGALINQAAKTLNDAGF 577
+ G LI A L D +
Sbjct: 89 ----------RDPGDRLIRHRACALRDTAY 108
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD + PDY VIK+PMDL TM +V+ Y L +F D + +NC YN D+
Sbjct: 34 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTAIFDNCRYYNPSDS 93
Query: 549 IFYK 552
FY+
Sbjct: 94 PFYQ 97
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 487 DIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
+IF +PVD+ EV DY +VIK+PMDL+T+ K+ + YL+ +DF D +L+ N L YN
Sbjct: 31 NIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 90
Query: 547 DTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQIGSIL 584
K G +I A TL D I + L
Sbjct: 91 -----------KDPGDKIIRHRACTLKDTAHAIIAAEL 117
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD + PDY VIK+PMDL TM +V+ Y L +F D + +NC YN D+
Sbjct: 93 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152
Query: 549 IFYKAG 554
FY+
Sbjct: 153 PFYQCA 158
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD + PDY VIK+PMDL TM +V+ Y L +F D + +NC YN D+
Sbjct: 93 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152
Query: 549 IFYKAG 554
FY+
Sbjct: 153 PFYQCA 158
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FL PV++ VP Y VIK+PMD +T+ K+ + QY +LE F D L+ +NC T+NE D+
Sbjct: 31 FLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 90
Query: 549 IFYKAGIKMKQ 559
+AG M++
Sbjct: 91 DIGRAGHNMRK 101
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD + PDY VIK+PMDL TM +V+ Y L +F D + +NC YN D+
Sbjct: 34 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 93
Query: 549 IFYK 552
FY+
Sbjct: 94 PFYQ 97
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD + PDY VIK+PMDL TM +V+ Y L +F D + +NC YN D+
Sbjct: 41 FLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 100
Query: 549 IFYK 552
FY+
Sbjct: 101 PFYQ 104
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD + PDY VIK+P DL T +V+ Y L +F D + +NC YN D+
Sbjct: 93 FLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADXTKIFDNCRYYNPSDS 152
Query: 549 IFYKAG 554
FY+
Sbjct: 153 PFYQCA 158
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKAN--QYLSLEDFENDFNLMVENCLTYNEK 546
F +PV + VPDY +IK PMDL+T+ +++ + Y EDF DF L+ +NC +NE
Sbjct: 102 FQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 160
Query: 547 DTIFYKAGIKMKQVGGALI 565
D+ AGIK++ L+
Sbjct: 161 DSEVANAGIKLENYFEELL 179
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 146 CQNSNVILFCDMCNLAVHQDCYGVPYI---PEGQWLCRRC--LHTPSRAVDCVLCPNNG- 199
CQN +L C+ C H C+ VP + P G+W+C C L P DC +N
Sbjct: 10 CQNGGELLCCEKCPKVFHLSCH-VPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSE 68
Query: 200 -----GAFKLT--DRGAWAHVVCALWIPEVRFANTVFLEPI 233
G KLT D+ ++ L+ E+ A F +P+
Sbjct: 69 KKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLA---FQDPV 106
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVDV + + DY D+IK PMD++T+ +K++A +Y ++F D LM NC YN
Sbjct: 44 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 103
Query: 547 D 547
D
Sbjct: 104 D 104
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKAN--QYLSLEDFENDFNLMVENCLTYNEK 546
F +PV + VPDY +IK PMDL+T+ +++ + Y EDF DF L+ +NC +NE
Sbjct: 41 FQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99
Query: 547 DTIFYKAGIKMKQVGGALI 565
D+ AGIK++ L+
Sbjct: 100 DSEVANAGIKLENYFEELL 118
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVDV + + DY D+IK PMD++T+ +K++A +Y ++F D LM NC YN
Sbjct: 46 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105
Query: 547 D 547
D
Sbjct: 106 D 106
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 481 KARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENC 540
K+ + F+EPV E P Y +VI+ PMDL TM+ ++K Y+S + F D + NC
Sbjct: 26 KSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNC 85
Query: 541 LTYNEKDTIFYKAGIKMKQVGGALINQAA 569
YN ++ +YK +++ + I +A
Sbjct: 86 KEYNPPESEYYKCANILEKFFFSKIKEAG 114
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVDV + + DY D+IK PMD++T+ +K++A +Y ++F D LM NC YN
Sbjct: 25 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 84
Query: 547 D 547
D
Sbjct: 85 D 85
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 489 FLEPVD--VIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD ++ +PDY D++K PMDL+T+ K+ QY + +D LM N YN K
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 547 DTIFYKAGIKMKQVGGALINQAAKTLN 573
+ YK K+ +V I+ ++L
Sbjct: 98 TSRVYKYCSKLSEVFEQEIDPVMQSLG 124
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F+EPV E P Y +VI+ PMDL TM+ ++K Y+S + F D + NC YN ++
Sbjct: 36 FMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPES 95
Query: 549 IFYKAGIKMKQVGGALINQAA 569
+YK +++ + I +A
Sbjct: 96 EYYKCANILEKFFFSKIKEAG 116
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVDV + + DY D+IK PMD++T+ +K+++ +Y ++F D LM NC YN
Sbjct: 33 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92
Query: 547 D 547
D
Sbjct: 93 D 93
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 489 FLEPVD--VIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD ++ +PDY D++K PMDL+T+ K+ QY + +D LM N YN K
Sbjct: 35 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 94
Query: 547 DTIFYKAGIKMKQVGGALINQAAKTLN 573
+ YK K+ +V I+ ++L
Sbjct: 95 TSRVYKFCSKLAEVFEQEIDPVMQSLG 121
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 489 FLEPVD--VIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD ++ +PDY D++K PMDL+T+ K+ QY + +D LM N YN K
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92
Query: 547 DTIFYKAGIKMKQVGGALINQAAKTLN 573
+ YK K+ +V I+ ++L
Sbjct: 93 TSRVYKFCSKLAEVFEQEIDPVMQSLG 119
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
FLEPVD P+Y +IK PMD+++M K+ Y + E+F ND M NC YN + +
Sbjct: 37 FLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESS 96
Query: 549 IFYK 552
+ K
Sbjct: 97 EYTK 100
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD +E+ DY D+IK PMDL+T+ K+ +Y + F D LM NC YN
Sbjct: 31 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 90
Query: 547 D 547
D
Sbjct: 91 D 91
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F+EPV E PDY +VI+ P+DL TMT ++++ Y++ + F D ++ NC YN D+
Sbjct: 24 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 83
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IKQPMD+ T+ +++ N Y + + DFN M NC YN+
Sbjct: 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD +E+ DY D+IK PMDL+T+ K+ +Y + F D LM NC YN
Sbjct: 36 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 95
Query: 547 D 547
D
Sbjct: 96 D 96
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IKQPMD+ T+ +++ N Y + + DFN M NC YN+
Sbjct: 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F+EPV E PDY +VI+ P+DL TMT ++++ Y++ + F D ++ NC YN D+
Sbjct: 28 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 87
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 481 KARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENC 540
+ R IFL E+PDY IK+PMD+ + + + AN+Y ++ DF +M N
Sbjct: 34 RGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNA 93
Query: 541 LTYNEKDTIFYKAGIKMKQV 560
TYNE +++ YK + + +V
Sbjct: 94 CTYNEPESLIYKDALVLHKV 113
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 481 KARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENC 540
+ R IFL E+PDY IK+PMD+ + + + AN+Y ++ DF +M N
Sbjct: 34 RGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNA 93
Query: 541 LTYNEKDTIFYKAGIKMKQV 560
TYNE +++ YK + + +V
Sbjct: 94 CTYNEPESLIYKDALVLHKV 113
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD I++ PDY +IK PMD+ T+ +++ N Y S + DFN M NC YN+
Sbjct: 42 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNK 100
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD I++ PDY +IK PMD+ T+ +++ N Y S + DFN M NC YN+
Sbjct: 40 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNK 98
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD I++ PDY +IK PMD+ T+ +++ N Y S + DFN M NC YN+
Sbjct: 38 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNK 96
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 487 DIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
+IF +PV DY +VIK+PMDL+T+ K+ + YL+ +DF D +L+ N L YN
Sbjct: 31 NIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85
Query: 547 DTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQIGSIL 584
K G +I A TL D I + L
Sbjct: 86 -----------KDPGDKIIRHRACTLKDTAHAIIAAEL 112
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD + + DY D+IK PMDL+T+ K++ Y ++F D LM NC YN
Sbjct: 31 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 90
Query: 547 D 547
D
Sbjct: 91 D 91
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD + + DY D+IK PMDL+T+ K++ Y ++F D LM NC YN
Sbjct: 29 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 88
Query: 547 D 547
D
Sbjct: 89 D 89
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVD + + DY D+IK PMDL+T+ K++ Y ++F D LM NC YN
Sbjct: 25 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 84
Query: 547 DTIFYKAGIKMKQV 560
D K++ V
Sbjct: 85 DHDVVAMARKLQDV 98
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 53/95 (55%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F++ E+P+Y ++I++P+D + +++ ++Y SL D E D L+ +N
Sbjct: 32 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQ 91
Query: 542 TYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAG 576
T+N + ++ Y+ I ++ V ++ + K + G
Sbjct: 92 TFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 51/89 (57%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F++ E+P+Y ++I++P+D + +++ ++Y SL D E D L+ +N
Sbjct: 28 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQ 87
Query: 542 TYNEKDTIFYKAGIKMKQVGGALINQAAK 570
T+N + ++ Y+ I ++ V ++ + K
Sbjct: 88 TFNLEGSLIYEDSIVLQSVFTSVRQKIEK 116
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 484 DTGDIFLEPVDVI----EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVEN 539
+ G + EP + + PDY IK P+ L + K+K +Y +L+ E D NLM EN
Sbjct: 35 NQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94
Query: 540 CLTYNEKDTIFYKAGIKMKQVGGALINQAAK 570
YN ++ YK +K++QV A + A+
Sbjct: 95 AKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F++ E+P+Y ++I++P+D + +++ ++Y SL D E D L+ +N
Sbjct: 33 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQ 92
Query: 542 TYNEKDTIFYKAGIKMKQVGGAL 564
T+N + ++ Y+ I ++ V ++
Sbjct: 93 TFNLEGSLIYEDSIVLQSVFTSV 115
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IK PMD+ T+ +++ N Y + ++ DFN M NC YN+
Sbjct: 46 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 104
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IK PMD+ T+ +++ N Y + ++ DFN M NC YN+
Sbjct: 62 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 120
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IK PMD+ T+ +++ N Y + ++ DFN M NC YN+
Sbjct: 42 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IK PMD+ T+ +++ N Y + ++ DFN M NC YN+
Sbjct: 42 FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F +PVDV + + DY D+IK P D +T+ +K+++ +Y ++F D L NC YN
Sbjct: 31 FYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPP 90
Query: 547 DTIFYKAGIKMKQV 560
D K++ V
Sbjct: 91 DHEVVAXARKLQDV 104
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F + ++ PDY +IK+P+DL T+ +++ Y S+ D +L+ +N
Sbjct: 29 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 88
Query: 542 TYNEKDTIFYKAGIKMKQV 560
TYNE + +K +K++
Sbjct: 89 TYNEPGSQVFKDANSIKKI 107
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F + ++ PDY +IK+P+DL T+ +++ Y S+ D +L+ +N
Sbjct: 28 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 87
Query: 542 TYNEKDTIFYKAGIKMKQV 560
TYNE + +K +K++
Sbjct: 88 TYNEPGSQVFKDANSIKKI 106
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F PV+ VPDY VI PMDL T+ + ++Y S E F +D NL++ N + YN ++
Sbjct: 191 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250
Query: 549 IFYKAG 554
+ K
Sbjct: 251 QYTKTA 256
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544
F PV+ V DY +I +PMDL T+ V+ Y S E+F L+V+N TYN
Sbjct: 68 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F + ++ PDY +IK+P+DL T+ +++ Y S+ D +L+ +N
Sbjct: 26 GRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAK 85
Query: 542 TYNEKDTIFYKAGIKMKQV 560
TYNE + +K +K++
Sbjct: 86 TYNEPGSQVFKDANSIKKI 104
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F PV+ VPDY VI PMDL T+ + ++Y S E F +D NL++ N + YN ++
Sbjct: 170 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 229
Query: 549 IFYKAG 554
+ K
Sbjct: 230 QYTKTA 235
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544
F PV+ V DY +I +PMDL T+ V+ Y S E+F L+V+N TYN
Sbjct: 47 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 102
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IKQP D T+ +++ N Y + + DFN NC YN+
Sbjct: 33 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNK 91
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F PV+ VPDY VI PMDL T+ + ++Y S E F +D NL++ N + YN ++
Sbjct: 158 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 217
Query: 549 IFYKAG 554
+ K
Sbjct: 218 QYTKTA 223
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544
F PV+ V DY +I +PMDL T+ V+ Y S E+F L+V+N TYN
Sbjct: 35 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R ++F++ E+P+Y ++I++P+D + +++ ++Y SL D E D L+ N
Sbjct: 33 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQ 92
Query: 542 TYNEKDTIFYKAGIKMKQV 560
T+N + + Y+ I ++ V
Sbjct: 93 TFNLEGSQIYEDSIVLQSV 111
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IKQP D T+ +++ N Y + + DFN NC YN+
Sbjct: 27 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNK 85
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F PVD + ++PDY +IK PMDL T+ +++ Y + DFN M NC YN+
Sbjct: 34 FQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNK 92
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 489 FLEPVDVIEV--PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545
F +PVD +++ PDY +IK PMDL T+ +++ Y + DFN M NC YN+
Sbjct: 35 FQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNK 93
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F PV+ VPDY VI PMDL T+ + ++Y S E F +D NL++ N + YN ++
Sbjct: 51 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 110
Query: 549 IFYKAGIKMKQV 560
+ K ++ V
Sbjct: 111 QYTKTAQEIVNV 122
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 486 GDIFLEPVDVIE--VPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543
G IF + VD + PDY DVIK P + + K+K QY +F D L+ +NC Y
Sbjct: 39 GHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLY 98
Query: 544 NEKDTIFYKAG 554
N +++ G
Sbjct: 99 NTSNSVVAITG 109
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN-EKD 547
F +PVD++E PDY D+I PMD T+ ++A Y S + D L+ N Y K
Sbjct: 42 FRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKR 101
Query: 548 TIFYKAGIKM 557
+ Y +++
Sbjct: 102 SRIYSMSLRL 111
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY--NEK 546
F +PVD++E PDY D+I PMD T+ + A Y S +F D L+ N Y N++
Sbjct: 31 FRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKR 90
Query: 547 DTIF 550
I+
Sbjct: 91 SKIY 94
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 489 FLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546
F PVD + + +Y DV+K PMDL T+ K+ +Y +F D LM NC YN
Sbjct: 38 FYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPP 97
Query: 547 D 547
D
Sbjct: 98 D 98
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F PV+ VPDY +I P+DL T+ + ++Y S E F +D NL++ N + YN ++
Sbjct: 48 FHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 107
Query: 549 IFYKAG 554
+ K
Sbjct: 108 QYTKTA 113
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F+E VD E+P+Y +++ PM L+ + ++ QY + DF D L+ +N +N+
Sbjct: 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 293
Query: 549 IFYKAGIKMKQVGGALINQ 567
+ YK + LI +
Sbjct: 294 LIYKDATTLTNYFNYLIQK 312
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 499 PDYADVIKQPMDLTTMTNKVKANQYLSLED----FENDFNLMVENCLTYNEKDTIFYKAG 554
P Y I+QPM + N++K+ Y ED F D L+ +NC YNE D++ K
Sbjct: 111 PQYYYKIQQPMSI----NEIKSRDY-EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNS 165
Query: 555 IKM 557
+++
Sbjct: 166 MQV 168
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F+E VD E+P+Y +++ PM L+ + ++ QY + DF D L+ +N +N+
Sbjct: 219 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 278
Query: 549 IFYKAGIKMKQVGGALINQ----AAKTLNDAG 576
+ YK + LI + + LN+ G
Sbjct: 279 LIYKDATTLTNYFNYLIQKEFFPELQDLNERG 310
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 499 PDYADVIKQPMDLTTMTNKVKANQYLSLED----FENDFNLMVENCLTYNEKDTIFYKAG 554
P Y I+QPM + N++K+ Y ED F D L+ +NC YNE D++ K
Sbjct: 96 PQYYYKIQQPMSI----NEIKSRDY-EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNS 150
Query: 555 IKM 557
+++
Sbjct: 151 MQV 153
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 499 PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKM 557
PDY +V+ QP+DL + K+K +Y + DF L+ N +Y + D+ YKA K+
Sbjct: 42 PDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKL 100
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVK---ANQYLSLEDFENDFNLMVENCLTYNE 545
F EPV +P+Y +IK+PMDL+T+ K++ + Y +DF D L+ +NC +NE
Sbjct: 102 FQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNE 160
Query: 546 --------KDT--IFYKAGIKMKQVGGAL 564
DT I KA ++ Q G A+
Sbjct: 161 MMKVVQVYADTQEINLKADSEVAQAGKAV 189
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 146 CQNSNVILFCDMCNLAVHQDCYGVPYI---PEGQWLCRRC--LHTPSRAVDC 192
CQN +L C+ C H C+ VP + P G W+C C + P DC
Sbjct: 13 CQNGGDLLCCEKCPKVFHLTCH-VPTLLSFPSGDWICTFCRDIGKPEVEYDC 63
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541
R D+F+ + PDY +I +PMDL + + ++ ++Y E D LM N
Sbjct: 45 GRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104
Query: 542 TYNEKDTIFY 551
YNE+ + Y
Sbjct: 105 HYNEEGSQVY 114
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 146 CQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRC 182
C+ S +L CD C+ H DC P IP+G W+C RC
Sbjct: 15 CRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F E VD E+P+Y +++ P L+ + ++ QY + DF D L+ +N +N+
Sbjct: 178 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 237
Query: 549 IFYKAGIKMKQVGGALINQ----AAKTLNDAG 576
+ YK + LI + + LN+ G
Sbjct: 238 LIYKDATTLTNYFNYLIQKEFFPELQDLNERG 269
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548
F E VD E+P+Y +++ P L+ + ++ QY + DF D L+ +N +N+
Sbjct: 184 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 243
Query: 549 IFYKAGIKMKQVGGALINQ----AAKTLNDAG 576
+ YK + LI + + LN+ G
Sbjct: 244 LIYKDATTLTNYFNYLIQKEFFPELQDLNERG 275
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI------PEGQWLCRRCL 183
VC IC + + N ++ CD C HQ C+ P+I + +WLCR+C+
Sbjct: 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCH-TPHIDSSVIDSDEKWLCRQCV 59
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 146 CQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRC 182
C+ S +L CD C+ H DC P IP+G W+C RC
Sbjct: 11 CRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 138 CCICNDGECQNSNVILFCDMCNLAVHQDCYG--VPYIPEGQWLCRRC 182
C +C DG +L CD C + H C +P IP G+WLC RC
Sbjct: 12 CRVCKDG-----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCY--GVPYIPEGQWLCRRCL 183
D +C +C+ G+ + +LFCD C+ H C +P IP G W C +C+
Sbjct: 15 DSYICQVCSRGD--EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64
>pdb|2GFU|A Chain A, Nmr Solution Structure Of The Pwwp Domain Of Mismatch
Repair Protein Hmsh6
Length = 134
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLF 775
F LVWAK GYPW+P+L+ N P + + V+ V F
Sbjct: 23 FSPGDLVWAKMEGYPWWPSLVYN---------------HPFDGTFIREKGKSVRVH-VQF 66
Query: 776 FDTKRTWQWLPRNKLEPL--GITDELDQIKLMESRKPADRKAVKKAYQEAL 824
FD T W+ + L+P + E + S KP +A+++A EAL
Sbjct: 67 FDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRA-DEAL 116
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLH 184
+E C +C DG ++ CD C A H C P IP G W C CL
Sbjct: 4 NEDECAVCRDG-----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 51
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 147 QNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRC 182
+N++ +LFCD C+ H +C P +P+G W+C+ C
Sbjct: 70 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 147 QNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRC 182
+N++ +LFCD C+ H +C P +P+G W+C+ C
Sbjct: 72 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 139 CICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRC 182
CIC G + ++ CD C++ H DC G+ +IP+ +LC RC
Sbjct: 31 CIC--GFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPD-TYLCERC 73
>pdb|2DAQ|A Chain A, Solution Structure Of Second Pwwp Domain Of Whsc1l1
Protein
Length = 110
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 720 QLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTK 779
Q+VW K Y W+PA I NP+ S P ++ L ++ + + V FF +
Sbjct: 13 QIVWVKLGNYRWWPAEICNPR-------------SVPLNIQGLKHDLGD--FPVFFFGS- 56
Query: 780 RTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
+ W+ + ++ P D K + + K KKA +EA
Sbjct: 57 HDYYWVHQGRVFPYVEGD-----KSFAEGQTSINKTFKKALEEA 95
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHT 185
+E C +C DG ++ CD C A H C P IP G W C CL
Sbjct: 7 NEDECAVCRDG-----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 138 CCICNDGECQNSNVILFCDMCNLAVHQDCY--GVPYIPEGQWLCRRC 182
C +C DG +L CD C + H C + +P+G+W C RC
Sbjct: 12 CRVCKDG-----GELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 144 GECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRC 182
G +N + +LFCD C+ H C P PEG W C C
Sbjct: 65 GTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2L89|A Chain A, Solution Structure Of Pdp1 Pwwp Domain Reveals Its Unique
Binding Sites For Methylated H4k20 And Dna
Length = 108
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 722 VWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRT 781
+ K GYPW+PAL++ + +D L N+ +Y VLFF
Sbjct: 12 ILVKAPGYPWWPALLLRRK--------------ETKDSLN-TNSSFNVLYKVLFF-PDFN 55
Query: 782 WQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVHKTP 829
+ W+ RN ++PL + E+ + RK K + +AY+ + KTP
Sbjct: 56 FAWVKRNSVKPL-LDSEIAKFLGSSKRK---SKELIEAYEAS---KTP 96
>pdb|3FLG|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta
pdb|3QKJ|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|B Chain B, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|C Chain C, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
pdb|3QKJ|D Chain D, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With A
Bis-Tris Molecule
Length = 151
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 721 LVWAKCRGYPWYPALIIN 738
LVW K +G+ W+PA++++
Sbjct: 24 LVWGKIKGFSWWPAMVVS 41
>pdb|1KHC|A Chain A, Crystal Structure Of The Pwwp Domain Of Mammalian Dna
Methyltransferase Dnmt3b
Length = 147
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 721 LVWAKCRGYPWYPALIIN 738
LVW K +G+ W+PA++++
Sbjct: 17 LVWGKIKGFSWWPAMVVS 34
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169
++ D A+ CIC + N+ ++ CD C H DC G+
Sbjct: 10 EVYDPNALYCICR--QPHNNRFMICCDRCEEWFHGDCVGI 47
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 146 CQNSNVILFCDMCNLAVHQDCY--GVPYIPEGQWLCRRC 182
CQ I+ CD C A H C + PEG+W C C
Sbjct: 17 CQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>pdb|3LLR|A Chain A, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|B Chain B, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|C Chain C, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|D Chain D, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
pdb|3LLR|E Chain E, Crystal Structure Of The Pwwp Domain Of Human Dna
(Cytosine-5-)- Methyltransferase 3 Alpha
Length = 154
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 720 QLVWAKCRGYPWYPALIIN 738
+LVW K RG+ W+P I++
Sbjct: 21 ELVWGKLRGFSWWPGRIVS 39
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 500 DYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543
DY + I P+DL T+ ++ Y ++E F+ D + N Y
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 146 CQNSNVILFCDMCNLAVHQDCY--GVPYIPEGQWLCRRC 182
CQ ++ C+ C H DC+ + +P +W C C
Sbjct: 8 CQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,573,695
Number of Sequences: 62578
Number of extensions: 891554
Number of successful extensions: 2362
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2237
Number of HSP's gapped (non-prelim): 135
length of query: 830
length of database: 14,973,337
effective HSP length: 107
effective length of query: 723
effective length of database: 8,277,491
effective search space: 5984625993
effective search space used: 5984625993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)