Query psy2279
Match_columns 830
No_of_seqs 579 out of 2651
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:37:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0955|consensus 100.0 5E-123 1E-127 1102.3 38.8 780 36-820 118-1051(1051)
2 KOG0954|consensus 100.0 4.5E-77 9.7E-82 665.2 18.7 427 8-466 129-587 (893)
3 COG5141 PHD zinc finger-contai 100.0 4.7E-72 1E-76 600.3 18.9 450 57-539 111-583 (669)
4 KOG0956|consensus 100.0 2.8E-42 6E-47 383.2 5.1 168 137-311 7-183 (900)
5 cd05839 BR140_related The PWWP 100.0 1.3E-36 2.9E-41 277.7 8.3 110 716-826 1-111 (111)
6 KOG0957|consensus 100.0 7.4E-33 1.6E-37 299.0 3.1 170 136-313 120-303 (707)
7 PF13832 zf-HC5HC2H_2: PHD-zin 99.9 7E-26 1.5E-30 211.0 7.2 110 190-308 1-110 (110)
8 cd05512 Bromo_brd1_like Bromod 99.9 2.7E-23 5.8E-28 189.1 9.1 97 468-564 1-97 (98)
9 cd05513 Bromo_brd7_like Bromod 99.9 4.5E-23 9.7E-28 187.3 10.0 97 468-564 1-97 (98)
10 cd05497 Bromo_Brdt_I_like Brom 99.9 9.1E-23 2E-27 188.6 10.5 101 467-567 4-106 (107)
11 cd05496 Bromo_WDR9_II Bromodom 99.9 1.5E-22 3.2E-27 190.0 12.0 108 469-576 6-114 (119)
12 cd05508 Bromo_RACK7 Bromodomai 99.9 1.7E-22 3.6E-27 183.9 10.3 96 468-564 3-98 (99)
13 cd05505 Bromo_WSTF_like Bromod 99.9 1.7E-22 3.6E-27 183.4 10.1 94 471-564 3-96 (97)
14 cd05495 Bromo_cbp_like Bromodo 99.9 3.3E-22 7.2E-27 185.2 11.5 101 469-569 4-107 (108)
15 cd05507 Bromo_brd8_like Bromod 99.9 4.9E-22 1.1E-26 183.0 10.9 99 469-567 4-102 (104)
16 cd05509 Bromo_gcn5_like Bromod 99.9 5.3E-22 1.1E-26 182.1 10.7 100 468-567 1-100 (101)
17 cd05503 Bromo_BAZ2A_B_like Bro 99.9 6.7E-22 1.4E-26 179.9 10.2 95 471-565 3-97 (97)
18 cd05511 Bromo_TFIID Bromodomai 99.9 1.4E-21 3.1E-26 182.2 11.9 107 469-575 1-107 (112)
19 cd05510 Bromo_SPT7_like Bromod 99.9 1.1E-21 2.4E-26 182.5 10.7 102 467-568 6-109 (112)
20 cd05504 Bromo_Acf1_like Bromod 99.9 1.4E-21 3.1E-26 182.9 11.0 102 467-568 11-112 (115)
21 cd05528 Bromo_AAA Bromodomain; 99.8 2.2E-21 4.8E-26 180.6 9.8 103 467-569 2-108 (112)
22 cd05516 Bromo_SNF2L2 Bromodoma 99.8 5.1E-21 1.1E-25 177.1 10.3 99 469-567 2-106 (107)
23 cd05502 Bromo_tif1_like Bromod 99.8 1.1E-20 2.4E-25 175.7 11.2 99 470-569 6-107 (109)
24 cd05506 Bromo_plant1 Bromodoma 99.8 1.4E-20 3.1E-25 172.0 10.5 96 470-565 2-99 (99)
25 cd05837 MSH6_like The PWWP dom 99.8 3.6E-21 7.9E-26 178.7 6.4 97 715-825 2-101 (110)
26 cd05501 Bromo_SP100C_like Brom 99.8 3.9E-20 8.5E-25 168.2 11.7 95 472-569 6-100 (102)
27 cd05499 Bromo_BDF1_2_II Bromod 99.8 2.3E-20 5E-25 171.5 10.3 95 471-565 3-102 (102)
28 cd05500 Bromo_BDF1_2_I Bromodo 99.8 2.7E-20 5.8E-25 171.3 10.6 95 470-564 6-102 (103)
29 cd05498 Bromo_Brdt_II_like Bro 99.8 3.6E-20 7.8E-25 170.3 10.5 95 471-565 3-102 (102)
30 cd05519 Bromo_SNF2 Bromodomain 99.8 4.5E-20 9.7E-25 169.8 10.1 96 469-564 1-102 (103)
31 cd05515 Bromo_polybromo_V Brom 99.8 6.9E-20 1.5E-24 169.0 10.5 97 470-566 2-104 (105)
32 cd05524 Bromo_polybromo_I Brom 99.8 7.4E-20 1.6E-24 170.8 10.6 100 470-569 4-109 (113)
33 cd05525 Bromo_ASH1 Bromodomain 99.8 9.5E-20 2E-24 168.0 10.7 96 469-564 3-104 (106)
34 cd05520 Bromo_polybromo_III Br 99.8 1.2E-19 2.5E-24 166.7 9.6 96 468-563 4-101 (103)
35 cd05517 Bromo_polybromo_II Bro 99.8 1.4E-19 3.1E-24 166.2 10.1 94 470-563 2-101 (103)
36 cd05518 Bromo_polybromo_IV Bro 99.8 1.6E-19 3.4E-24 165.8 10.0 82 482-563 20-101 (103)
37 smart00297 BROMO bromo domain. 99.8 2E-19 4.4E-24 166.3 10.4 101 467-567 6-106 (107)
38 cd05529 Bromo_WDR9_I_like Brom 99.8 3.3E-19 7.2E-24 170.1 11.4 96 471-566 27-126 (128)
39 PF10513 EPL1: Enhancer of pol 99.8 8.4E-20 1.8E-24 181.4 7.0 98 20-118 50-160 (160)
40 KOG1474|consensus 99.8 1.5E-19 3.2E-24 214.4 10.1 113 465-577 219-333 (640)
41 cd05492 Bromo_ZMYND11 Bromodom 99.8 5.6E-19 1.2E-23 162.9 11.3 101 470-570 2-108 (109)
42 cd05522 Bromo_Rsc1_2_II Bromod 99.8 6.7E-19 1.4E-23 162.2 10.2 97 468-564 1-103 (104)
43 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.9E-18 4.2E-23 159.2 10.4 96 469-566 2-103 (106)
44 cd05840 SPBC215_ISWI_like The 99.7 8.9E-19 1.9E-23 157.5 5.6 92 716-825 1-92 (93)
45 PF00439 Bromodomain: Bromodom 99.7 3.8E-18 8.2E-23 150.9 9.1 84 473-556 1-84 (84)
46 cd04369 Bromodomain Bromodomai 99.7 1.2E-17 2.5E-22 151.0 9.5 95 470-564 2-98 (99)
47 cd05162 PWWP The PWWP domain, 99.7 6.6E-18 1.4E-22 150.7 5.6 87 716-826 1-87 (87)
48 KOG1245|consensus 99.7 4.3E-17 9.3E-22 204.2 12.0 94 473-567 1306-1399(1404)
49 PF13771 zf-HC5HC2H: PHD-like 99.6 2E-16 4.4E-21 141.9 3.8 88 212-309 1-90 (90)
50 cd05526 Bromo_polybromo_VI Bro 99.6 2.2E-15 4.9E-20 138.6 10.4 99 469-569 4-108 (110)
51 smart00293 PWWP domain with co 99.6 3.7E-16 8.1E-21 130.8 4.4 63 716-794 1-63 (63)
52 cd05834 HDGF_related The PWWP 99.6 9.6E-16 2.1E-20 135.1 4.9 60 715-797 2-61 (83)
53 PF00855 PWWP: PWWP domain; I 99.6 2.9E-16 6.2E-21 139.6 1.4 59 716-794 1-59 (86)
54 cd05838 WHSC1_related The PWWP 99.6 1.3E-15 2.7E-20 137.9 5.1 87 717-819 2-88 (95)
55 cd05835 Dnmt3b_related The PWW 99.6 9.8E-16 2.1E-20 136.5 3.4 86 716-822 1-86 (87)
56 cd05841 BS69_related The PWWP 99.6 2.3E-15 5.1E-20 131.3 4.7 78 715-826 6-83 (83)
57 cd05836 N_Pac_NP60 The PWWP do 99.6 2.8E-15 6.1E-20 133.1 5.0 63 716-797 1-63 (86)
58 COG5076 Transcription factor i 99.5 8.2E-14 1.8E-18 156.6 9.4 92 484-575 164-255 (371)
59 KOG1080|consensus 99.3 1.4E-12 2.9E-17 158.4 6.0 143 135-285 573-716 (1005)
60 cd06080 MUM1_like Mutated mela 99.3 6.4E-12 1.4E-16 109.2 5.3 57 716-797 1-57 (80)
61 KOG1472|consensus 99.3 4.2E-12 9.2E-17 148.3 5.6 105 466-570 604-708 (720)
62 PF13831 PHD_2: PHD-finger; PD 99.1 1.3E-11 2.9E-16 91.0 0.3 35 149-183 1-36 (36)
63 KOG0008|consensus 98.8 9.2E-09 2E-13 124.7 9.1 98 471-568 1385-1482(1563)
64 cd05494 Bromodomain_1 Bromodom 98.8 4.2E-09 9E-14 98.7 4.1 73 473-545 8-89 (114)
65 cd05491 Bromo_TBP7_like Bromod 98.7 8.3E-09 1.8E-13 95.6 4.5 42 507-548 63-104 (119)
66 KOG1827|consensus 98.6 1E-07 2.2E-12 110.6 9.0 100 468-567 52-157 (629)
67 KOG1828|consensus 98.5 2.8E-08 6.1E-13 107.5 0.7 103 465-567 16-118 (418)
68 KOG0008|consensus 98.5 1.9E-07 4.1E-12 113.6 7.6 100 469-568 1262-1361(1563)
69 KOG0386|consensus 98.4 2.3E-07 4.9E-12 110.7 6.7 100 471-570 1027-1132(1157)
70 KOG1904|consensus 98.3 4.2E-07 9.1E-12 103.5 5.5 63 714-797 11-73 (496)
71 KOG1828|consensus 98.3 4.9E-07 1.1E-11 98.1 4.5 95 464-559 204-298 (418)
72 KOG1472|consensus 98.1 1.4E-06 3.1E-11 102.7 3.3 68 483-550 301-368 (720)
73 PF00628 PHD: PHD-finger; Int 98.1 1.4E-06 3.1E-11 69.6 1.5 45 137-183 1-49 (51)
74 smart00249 PHD PHD zinc finger 98.0 5.8E-06 1.2E-10 64.0 3.3 44 137-182 1-47 (47)
75 KOG1244|consensus 98.0 2.9E-06 6.2E-11 87.9 1.8 48 135-184 281-330 (336)
76 KOG4323|consensus 97.9 1.3E-05 2.7E-10 90.5 5.1 142 131-310 79-223 (464)
77 KOG1512|consensus 97.8 4.4E-06 9.5E-11 87.0 0.8 47 136-184 315-363 (381)
78 KOG4323|consensus 97.6 2.9E-05 6.4E-10 87.7 2.4 52 135-186 168-225 (464)
79 KOG4299|consensus 97.2 0.00011 2.4E-09 84.8 1.3 49 135-185 253-305 (613)
80 PF15446 zf-PHD-like: PHD/FYVE 97.2 0.00028 6E-09 69.2 3.7 65 137-201 1-83 (175)
81 KOG0825|consensus 97.1 0.0002 4.4E-09 83.5 1.9 49 134-184 214-265 (1134)
82 KOG1084|consensus 97.1 0.00018 4E-09 80.8 1.6 108 179-309 213-321 (375)
83 KOG1474|consensus 97.0 0.00016 3.5E-09 87.0 0.2 89 481-569 5-95 (640)
84 cd05493 Bromo_ALL-1 Bromodomai 96.4 0.004 8.6E-08 59.5 4.7 66 508-573 59-124 (131)
85 KOG1973|consensus 96.1 0.0023 5E-08 69.4 1.4 49 133-185 217-268 (274)
86 KOG4443|consensus 95.6 0.0048 1.1E-07 71.8 1.3 48 134-183 67-116 (694)
87 KOG0383|consensus 95.4 0.0077 1.7E-07 72.2 2.1 45 134-183 46-92 (696)
88 COG5076 Transcription factor i 95.2 0.0064 1.4E-07 68.9 0.5 94 476-569 271-364 (371)
89 COG5034 TNG2 Chromatin remodel 94.6 0.016 3.6E-07 60.5 1.8 48 133-184 219-269 (271)
90 PF14446 Prok-RING_1: Prokaryo 93.4 0.051 1.1E-06 43.8 2.1 34 134-168 4-37 (54)
91 KOG1473|consensus 92.8 0.086 1.9E-06 64.9 3.6 111 135-279 344-460 (1414)
92 cd04718 BAH_plant_2 BAH, or Br 92.5 0.066 1.4E-06 52.3 1.8 25 161-185 1-27 (148)
93 smart00249 PHD PHD zinc finger 92.3 0.13 2.9E-06 39.2 3.0 32 247-280 1-33 (47)
94 KOG1081|consensus 89.2 0.19 4.2E-06 58.4 1.9 55 714-793 134-188 (463)
95 KOG0957|consensus 89.1 0.14 3E-06 58.1 0.5 47 135-183 544-596 (707)
96 KOG4443|consensus 88.9 0.2 4.3E-06 58.9 1.7 75 135-217 18-99 (694)
97 KOG1044|consensus 87.8 0.31 6.8E-06 56.4 2.3 99 177-281 114-224 (670)
98 PF08169 RBB1NT: RBB1NT (NUC16 86.5 1.3 2.8E-05 40.2 5.0 67 730-827 22-88 (96)
99 KOG1512|consensus 85.5 0.42 9.1E-06 50.8 1.6 56 134-196 257-321 (381)
100 KOG4299|consensus 85.0 1.1 2.4E-05 52.8 4.8 45 135-184 47-94 (613)
101 PF00628 PHD: PHD-finger; Int 84.2 0.68 1.5E-05 36.6 2.0 31 247-279 1-32 (51)
102 PF02318 FYVE_2: FYVE-type zin 83.8 1.7 3.7E-05 41.1 4.8 50 134-184 53-102 (118)
103 KOG0644|consensus 83.6 0.95 2.1E-05 54.6 3.6 59 505-563 1050-1108(1113)
104 KOG0732|consensus 82.8 1.1 2.5E-05 56.1 4.0 64 484-547 531-601 (1080)
105 KOG1244|consensus 82.8 0.64 1.4E-05 49.2 1.6 101 110-217 194-312 (336)
106 KOG1973|consensus 82.0 0.54 1.2E-05 51.1 0.8 31 246-277 220-251 (274)
107 PF00130 C1_1: Phorbol esters/ 80.4 1.4 3.1E-05 35.1 2.5 37 133-169 9-45 (53)
108 KOG0954|consensus 79.8 0.78 1.7E-05 54.6 1.1 28 247-277 325-352 (893)
109 PF11717 Tudor-knot: RNA bindi 79.6 0.89 1.9E-05 37.0 1.1 53 716-791 1-54 (55)
110 PF05502 Dynactin_p62: Dynacti 78.4 1.8 4E-05 50.8 3.6 82 150-253 3-94 (483)
111 cd00029 C1 Protein kinase C co 77.4 1.3 2.8E-05 34.6 1.4 35 134-168 10-44 (50)
112 COG5194 APC11 Component of SCF 77.1 0.92 2E-05 39.4 0.5 32 247-278 22-65 (88)
113 PF07649 C1_3: C1-like domain; 76.8 1.2 2.6E-05 31.5 0.9 28 137-166 2-29 (30)
114 PF14569 zf-UDP: Zinc-binding 75.2 0.68 1.5E-05 40.1 -0.8 49 135-184 9-59 (80)
115 smart00333 TUDOR Tudor domain. 75.0 1.7 3.7E-05 35.0 1.5 53 715-794 2-54 (57)
116 PF15057 DUF4537: Domain of un 73.5 2.3 5E-05 40.7 2.2 57 713-793 53-112 (124)
117 COG5034 TNG2 Chromatin remodel 72.7 2.6 5.6E-05 44.6 2.5 32 245-277 221-253 (271)
118 PF13901 DUF4206: Domain of un 71.9 2.6 5.6E-05 43.8 2.3 42 136-184 153-197 (202)
119 PF11793 FANCL_C: FANCL C-term 71.7 1.8 3.9E-05 37.1 0.9 35 135-169 2-39 (70)
120 PF10367 Vps39_2: Vacuolar sor 70.8 4 8.8E-05 37.2 3.2 35 130-167 73-107 (109)
121 KOG2261|consensus 70.3 2.8 6E-05 50.9 2.4 93 366-462 75-177 (716)
122 KOG0383|consensus 70.2 2.7 5.8E-05 51.1 2.2 77 157-281 1-79 (696)
123 PF07227 DUF1423: Protein of u 69.9 3.2 7E-05 47.4 2.7 14 207-220 152-165 (446)
124 KOG4217|consensus 69.3 1.8 4E-05 49.2 0.6 36 200-253 294-329 (605)
125 smart00109 C1 Protein kinase C 68.8 2.2 4.9E-05 32.9 0.9 34 134-168 10-43 (49)
126 KOG2261|consensus 68.5 3 6.4E-05 50.7 2.2 38 73-119 21-58 (716)
127 PF07227 DUF1423: Protein of u 67.2 3.9 8.5E-05 46.8 2.6 31 137-167 130-161 (446)
128 PF03107 C1_2: C1 domain; Int 63.5 5.7 0.00012 28.2 2.0 27 137-166 2-29 (30)
129 PF10621 FpoO: F420H2 dehydrog 60.3 2.3 5E-05 39.2 -0.6 49 154-202 3-73 (119)
130 PF07649 C1_3: C1-like domain; 58.2 6.6 0.00014 27.7 1.5 28 247-276 2-30 (30)
131 PF07282 OrfB_Zn_ribbon: Putat 57.6 12 0.00025 31.6 3.3 36 134-169 27-63 (69)
132 PLN02400 cellulose synthase 57.4 7.3 0.00016 49.3 2.8 50 135-185 36-87 (1085)
133 PLN02638 cellulose synthase A 57.2 6.4 0.00014 49.8 2.3 49 135-184 17-67 (1079)
134 PLN02436 cellulose synthase A 57.1 6.8 0.00015 49.5 2.4 50 135-185 36-87 (1094)
135 KOG0825|consensus 54.5 5.1 0.00011 48.3 0.8 31 245-277 215-247 (1134)
136 PLN02195 cellulose synthase A 52.7 8.7 0.00019 48.2 2.4 48 136-184 7-56 (977)
137 PF03107 C1_2: C1 domain; Int 52.6 10 0.00022 26.8 1.8 28 247-276 2-30 (30)
138 PLN02915 cellulose synthase A 52.4 8.9 0.00019 48.4 2.4 50 134-184 14-65 (1044)
139 KOG2114|consensus 52.0 12 0.00026 45.9 3.3 42 134-184 839-880 (933)
140 KOG3799|consensus 50.3 13 0.00028 35.6 2.6 53 130-183 60-114 (169)
141 PF14446 Prok-RING_1: Prokaryo 50.2 13 0.00029 30.3 2.2 38 245-284 5-44 (54)
142 PF08746 zf-RING-like: RING-li 50.1 11 0.00024 29.1 1.8 30 248-278 1-30 (43)
143 PF12906 RINGv: RING-variant d 49.0 2.4 5.3E-05 33.3 -2.1 31 138-169 1-34 (47)
144 cd04508 TUDOR Tudor domains ar 48.3 7.7 0.00017 30.0 0.6 46 719-791 1-47 (48)
145 PF10367 Vps39_2: Vacuolar sor 48.2 9.9 0.00021 34.6 1.5 30 246-278 79-109 (109)
146 PF13639 zf-RING_2: Ring finge 48.0 7.6 0.00016 29.7 0.6 32 136-169 1-32 (44)
147 PLN02189 cellulose synthase 47.6 12 0.00025 47.5 2.3 49 135-184 34-84 (1040)
148 PF12861 zf-Apc11: Anaphase-pr 45.8 10 0.00022 33.8 1.1 33 246-278 22-63 (85)
149 PF13832 zf-HC5HC2H_2: PHD-zin 44.6 13 0.00028 34.4 1.7 29 135-167 55-85 (110)
150 PF00641 zf-RanBP: Zn-finger i 41.7 12 0.00026 26.3 0.7 24 174-197 2-26 (30)
151 smart00744 RINGv The RING-vari 41.0 10 0.00022 30.1 0.3 31 137-168 1-34 (49)
152 PF10080 DUF2318: Predicted me 40.7 14 0.00029 34.3 1.1 34 135-168 35-68 (102)
153 KOG2807|consensus 39.4 20 0.00043 39.4 2.3 84 172-277 272-361 (378)
154 PF12861 zf-Apc11: Anaphase-pr 39.2 17 0.00037 32.4 1.5 50 133-183 19-78 (85)
155 KOG0695|consensus 38.4 12 0.00025 41.5 0.3 39 134-172 140-178 (593)
156 KOG1246|consensus 38.0 24 0.00052 45.0 3.1 50 135-187 155-206 (904)
157 PHA02862 5L protein; Provision 37.7 14 0.0003 36.1 0.7 51 135-199 2-52 (156)
158 PF11781 RRN7: RNA polymerase 36.9 21 0.00045 26.6 1.4 26 136-161 9-34 (36)
159 KOG1827|consensus 36.6 6.2 0.00013 47.2 -2.2 75 486-560 213-287 (629)
160 KOG1080|consensus 36.4 32 0.00069 43.9 3.7 92 714-819 190-288 (1005)
161 PF11793 FANCL_C: FANCL C-term 35.5 21 0.00045 30.6 1.4 33 246-278 3-39 (70)
162 KOG2932|consensus 35.1 21 0.00045 38.9 1.6 43 150-196 88-130 (389)
163 KOG3612|consensus 34.8 17 0.00037 42.5 1.0 52 498-549 145-196 (588)
164 KOG2930|consensus 34.3 7 0.00015 35.8 -1.8 32 247-278 48-92 (114)
165 smart00743 Agenet Tudor-like d 34.0 23 0.0005 29.0 1.4 25 715-739 2-27 (61)
166 KOG0804|consensus 32.9 19 0.00041 41.2 0.9 60 132-196 172-235 (493)
167 TIGR00595 priA primosomal prot 32.6 58 0.0013 38.7 5.0 76 102-197 182-261 (505)
168 PRK14873 primosome assembly pr 32.4 63 0.0014 39.8 5.3 77 102-198 353-431 (665)
169 KOG1844|consensus 32.3 28 0.0006 41.2 2.2 49 136-185 86-135 (508)
170 KOG0782|consensus 32.1 12 0.00026 43.7 -0.8 85 149-278 196-295 (1004)
171 KOG3896|consensus 31.4 39 0.00085 37.3 2.9 46 148-196 20-74 (449)
172 KOG1084|consensus 31.4 16 0.00035 41.6 0.0 115 188-313 122-253 (375)
173 KOG2041|consensus 31.0 83 0.0018 38.3 5.6 63 134-200 1116-1185(1189)
174 PF13771 zf-HC5HC2H: PHD-like 30.2 35 0.00076 30.1 2.0 30 135-168 36-67 (90)
175 PF10235 Cript: Microtubule-as 29.8 28 0.0006 31.5 1.2 33 154-198 46-78 (90)
176 PF10497 zf-4CXXC_R1: Zinc-fin 29.2 42 0.00091 31.2 2.4 59 136-201 8-82 (105)
177 KOG4477|consensus 28.2 28 0.00061 35.1 1.1 34 169-202 17-51 (228)
178 smart00547 ZnF_RBZ Zinc finger 28.2 35 0.00077 22.9 1.3 23 175-197 1-24 (26)
179 PHA02929 N1R/p28-like protein; 28.1 92 0.002 33.3 5.0 35 134-168 173-210 (238)
180 COG1198 PriA Primosomal protei 27.8 72 0.0016 39.5 4.7 78 103-198 405-484 (730)
181 KOG4628|consensus 27.4 38 0.00083 38.0 2.1 46 136-184 230-275 (348)
182 cd00162 RING RING-finger (Real 27.0 25 0.00055 25.8 0.5 42 137-183 1-42 (45)
183 PF04108 APG17: Autophagy prot 26.9 8.8E+02 0.019 28.0 13.2 110 436-572 52-163 (412)
184 KOG0644|consensus 25.7 24 0.00052 43.3 0.2 70 489-559 86-185 (1113)
185 KOG1493|consensus 25.2 25 0.00054 30.6 0.1 33 247-279 22-63 (84)
186 KOG4718|consensus 24.9 46 0.00099 34.6 1.9 89 77-169 106-211 (235)
187 PF12773 DZR: Double zinc ribb 24.6 54 0.0012 25.6 2.0 38 138-185 1-38 (50)
188 PRK14559 putative protein seri 24.4 47 0.001 40.6 2.3 23 137-162 3-25 (645)
189 PF08792 A2L_zn_ribbon: A2L zi 23.9 58 0.0012 23.8 1.8 28 135-162 3-31 (33)
190 KOG0696|consensus 23.7 19 0.00041 41.1 -1.1 37 133-169 54-90 (683)
191 PHA02825 LAP/PHD finger-like p 23.3 38 0.00083 33.7 1.0 35 134-169 7-41 (162)
192 PRK14890 putative Zn-ribbon RN 22.8 89 0.0019 26.0 2.9 50 136-199 8-58 (59)
193 KOG1829|consensus 22.5 27 0.00058 41.8 -0.2 30 150-184 529-558 (580)
194 KOG1280|consensus 22.3 76 0.0016 35.4 3.1 80 150-255 6-89 (381)
195 KOG3038|consensus 22.2 61 0.0013 34.7 2.3 41 713-780 196-240 (264)
196 PF13922 PHD_3: PHD domain of 22.1 12 0.00026 31.5 -2.2 23 149-171 40-62 (69)
197 PF12678 zf-rbx1: RING-H2 zinc 21.9 43 0.00093 28.8 0.9 32 247-278 21-61 (73)
198 KOG1044|consensus 21.6 37 0.00081 40.1 0.6 58 154-217 162-220 (670)
199 PRK05580 primosome assembly pr 21.6 1.2E+02 0.0025 37.6 4.9 78 101-198 349-430 (679)
200 TIGR02606 antidote_CC2985 puta 21.3 1.2E+02 0.0026 25.9 3.6 27 512-538 12-38 (69)
201 PF12678 zf-rbx1: RING-H2 zinc 20.1 65 0.0014 27.7 1.7 34 135-168 19-60 (73)
202 KOG4215|consensus 20.1 54 0.0012 36.8 1.4 58 134-196 18-78 (432)
No 1
>KOG0955|consensus
Probab=100.00 E-value=5.3e-123 Score=1102.33 Aligned_cols=780 Identities=46% Similarity=0.792 Sum_probs=622.5
Q ss_pred CCCCCceEEEcCCCCCCCCCCCCcCceecccCChhhcccccccCCChhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q psy2279 36 TKLPEPCFKELDDYKHLDSISRPTAYIRFIEKNADELDEEVEYDMDEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRL 115 (830)
Q Consensus 36 ~~lP~p~~~~~~~~~~~~~~~~p~~Yir~~e~~~ee~~~~~eYDmDe~D~~wL~~~N~~r~~~~~~~~s~~~fE~~md~L 115 (830)
..+|++.++.++.+....++.+|..|+++++...++++..++|||||+|..||..+|+.|...+...++.++||.+||++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~e~~y~~de~d~~wl~~~n~~~~~~~~~~v~~~~~~~~~dr~ 197 (1051)
T KOG0955|consen 118 PRSPQHKVREFELLRPMDAPPRPNFYYDEIEKSKETLDEEVEYDLDEEDYSWLDIMNELRTRNGVFDVSIDTFELLVDRL 197 (1051)
T ss_pred ccChhhhheeccccccccCCCCCCcchhhhccchhhhccccccchHHHHHHHHhhhhHHHhhcCCccccccchhhhhhhH
Confidence 35788999999877778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCC--CCCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccc
Q psy2279 116 EKECQFQMSHTQSQ--DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCV 193 (830)
Q Consensus 116 EkE~~~~~~~~~~~--~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~ 193 (830)
|||++|.....+.+ ..+++|.+|+||.++++.|.|.|||||+|+++|||+|||+++||||+|+|++|.+++.+.+.|+
T Consensus 198 eke~~f~~~e~~~~~~~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~ 277 (1051)
T KOG0955|consen 198 EKESYFKNYELGDPKDALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCL 277 (1051)
T ss_pred HHHHHhhhhhccCCCccccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceE
Confidence 99999988776554 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccCCCcccccccccCCceeeccCcccCCccccccccccccCcccccccCCCCcceeeecCCCCCcccch
Q psy2279 194 LCPNNGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHV 273 (830)
Q Consensus 194 lC~~~gGa~k~t~~~~W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHv 273 (830)
+||..|||||+|++|+|+|++||+|+|||.|+|+.+++||++|++|+..||+|.|++|++++.||||||+..+|++||||
T Consensus 278 ~cp~~~gAFkqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hv 357 (1051)
T KOG0955|consen 278 LCPSKGGAFKQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHV 357 (1051)
T ss_pred eccCCCCcceeccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999997799999999999999999
Q ss_pred hhhhhcCcccccccccCCC-CCCceeeeEEEeCCCCCCCCCCCC-CCC-------------CCCchHHHHHHHH-HHhhh
Q psy2279 274 TCAQQAGLYMNMDTIRDHS-GVEPVVVQKLAYCDAHTPPDVQHR-PRL-------------PAPSDEKLKNARL-VLAKK 337 (830)
Q Consensus 274 tCA~~aG~~~~~~~~~~~~-~~~~~~v~~~~~C~~H~~~~~~~~-~~~-------------~~~~~~k~~~~~~-~~~~~ 337 (830)
|||+++|++|+++.+.+.+ ++....|.+.+||++|+|++.... .+. ....+.+.+++++ +..++
T Consensus 358 tca~~agl~m~~~~~~~~s~~~~s~~v~~~syC~~H~pp~~~~g~~d~~~~~~el~~~~~~~~~~r~k~~~~~~~~~~~~ 437 (1051)
T KOG0955|consen 358 TCARRAGLYMKSNTVKELSKNGTSQSVNKISYCDKHTPPGDAEGLKDGDLKLLELTKVDTTEAFKRNKAKKARKFALAPK 437 (1051)
T ss_pred hhHhhcCceEeecccccccccccccccceeeeccCCCCchhhhhhhhcchhhhhhhhhhhhhHHHhhHhhhccccccccc
Confidence 9999999999988888764 556667889999999999963221 000 1123334445555 55667
Q ss_pred ccCCCccccCCCChhhHHHHhhhccCchhhHHHHHHHHHHHHhhhccCCCCcccccccchhccccccccccCCCCCCCch
Q psy2279 338 RVSVPTVSIPTIPPERVQDIAQLISVPKKSQLMNRLIAYWTIKRQLRNGVPLLRRLQSSHQARRDEHCKIMSNTPENGNI 417 (830)
Q Consensus 338 ~~~~p~~~~p~~~~~~~~~i~~~~~i~~~~~~v~~i~~YW~LKR~~r~g~PLlrRLq~~~~~~~~~~~~~~~~~~~~~~~ 417 (830)
.+..|++.+|++|.+++++|+..+.++.+.+|+++||.||.+||+.|+|+||++|||....++++.+++ ...+ +.+.
T Consensus 438 ~~~~p~~~~p~vp~~rls~i~~~~~~~~~~~~~~~i~~~w~~kR~~r~g~pLl~~lq~~~~s~rn~~~~--~~~~-D~~~ 514 (1051)
T KOG0955|consen 438 CTPNPTSKVPTVPPHRLSKIVDRLTLQRKPQFMDRICKYWYLKRLSRNGAPLLGRLQSLSKSSRNKEQV--GREG-DLKN 514 (1051)
T ss_pred cCCCcccccccchHHHHHhhcccccccCcchhhhhhhhhHHHHHHhhCCcchhhhhhhhhhccccchhc--cccc-Cccc
Confidence 888999999999999999999999999999999999999999999999999999999999888886643 2334 5677
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHhhcccCCcccccCCCCC
Q psy2279 418 TELYHELKYWQCLRQDLERARLLCELVRKREKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIE 497 (830)
Q Consensus 418 ~~l~~rl~~~~~LR~DLEr~R~L~elVrKREKlKre~~k~~eei~e~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~ 497 (830)
.++.+.+++|+.|++||++++.|++++++|+++++.+...+...+...+.|+..+++.+++.++..|...+|..||+..+
T Consensus 515 ~~~~d~~k~~~~L~~~~~s~~~l~e~~r~r~~lk~~~~~~~~~~~~~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e 594 (1051)
T KOG0955|consen 515 KARVDSLKYWQALRLDLESAQLLVELTRKREKLKRILVKSQKEALELGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSE 594 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhchhhhhhcccCchHHHHHHHHHHHhhcccccCceeeccChhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Q psy2279 498 VPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAG- 576 (830)
Q Consensus 498 ~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~e~~~- 576 (830)
+|||.++|++||||.+|+.+++.+.|.++++|++|+.||+.||+.||..++.+|++|.+++++....+.+++++.+...
T Consensus 595 ~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~ 674 (1051)
T KOG0955|consen 595 LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPESEGL 674 (1051)
T ss_pred cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCCCCCCCCCCCCCCC------CCCcc-cccchhh------------------------------------hhhhhhhh
Q psy2279 577 -FDQIGSILPGTSAKGV------NSSDV-VHMEETS------------------------------------KAENNKQE 612 (830)
Q Consensus 577 -~~~~~~~~~~~~~~~~------~~~d~-~~~~~~~------------------------------------~~~~~~~~ 612 (830)
+.+.+++.+....... +|++. .....+. +++++..+
T Consensus 675 ~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~s~~r 754 (1051)
T KOG0955|consen 675 LDRESLSHHDHLVKKLERPYRPNLWAPEEPQVDLETFINLSKEHDLKIPLDKNEKKKATKLSIPRNRDSRIIRKEKSRLR 754 (1051)
T ss_pred cchhhhcccchhhhhhccCCccccccccccccccccccccChhhhhccccccchhhhhhhcccccccccccchhhHHHHh
Confidence 3344454444433211 23221 0001110 01111111
Q ss_pred hccC-------CcccccCC------------CCCCCCC--CCCCCcccc--c-------------------cCCC-----
Q psy2279 613 EKKN-------STDVVMGM------------SSKDTKN--FKSPEITTR--K-------------------RHGN----- 645 (830)
Q Consensus 613 ~~~~-------~~~~~~~~------------~rrts~~--~~~p~~~~~--~-------------------~~~~----- 645 (830)
.... +.+...|+ +++++.. .++|..... + .+.+
T Consensus 755 ~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~ 834 (1051)
T KOG0955|consen 755 KCGIVDTETSGSPSIPSGGEKTVKKDGLNSKNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQ 834 (1051)
T ss_pred hccCcCccccCCCCCCCccccchhcccccccccccccchhhcCCCCCCCCCCccccccccCchhhHhhcccccccccccc
Confidence 1000 00000100 1111100 011111000 0 0000
Q ss_pred -CCCCCcccCCC------CCCCccccccCCCCccCCCCCCCCCCCCCCCCCCCCCCCC--C-CCCCC--------CC---
Q psy2279 646 -KKKGAQEELSV------PESDSFKVYRSGGELKGEAFDSAEEGGEDGEENSSCSECS--S-SCDSS--------DS--- 704 (830)
Q Consensus 646 -~~~~~~~~~s~------~~~~~~~~~r~~~~~~~~~s~s~s~~~~~s~~~~~~s~~~--~-~~~~~--------~~--- 704 (830)
+...+.+..+. .....+-+++ +...+.+.+++.++.++.+.++.+++.|. + -.+++ .+
T Consensus 835 n~t~~~~~~~~~~~~~~~~~~~~~g~g~-~~~tP~~~~e~~~~~ss~~p~~~s~~~~p~~~~~~~s~~r~~ta~~~sa~~ 913 (1051)
T KOG0955|consen 835 NPTASANNLASTSCSVTKATFTGNGVGG-DVKTPKRPSEPSSIISSLSPSSKSTSICPKHGVCKPSGERMPTASVTSADI 913 (1051)
T ss_pred CCCcccccccccccccccCCccCCCCCc-cccCCCCcCCccccccccCCcCCccccCCccccCCcccccCCccccccccc
Confidence 00000000000 0000011111 11122222222222222222222222222 0 00010 00
Q ss_pred --CCC-----------CCCCCC-----CCCCccchhhhhccCCCCCceEeeCCCCCC-CcccCCCCCCCCcHHHHhhhcC
Q psy2279 705 --ESG-----------SSVSGS-----HTFEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANN 765 (830)
Q Consensus 705 --~~~-----------~~~~~~-----~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~-g~~h~~~~~~~pp~~~~~~~~~ 765 (830)
..| +.+..+ ..|+++++|||||+||||||++|++|+||+ |.+||| |||+||.+|++++++
T Consensus 914 ~~~~~g~~ak~~~~~~~~l~~~~~~~~~~l~~~~~~~akc~g~~s~~~l~l~p~~~~~~~~~~g-~~~~p~~dv~~l~eq 992 (1051)
T KOG0955|consen 914 SNINGGGYAKCSKSPYSVLFPEKGLSVGKLEELKLVWAKCRGYPSYPALILDPKMPREGNFHNG-PDPAPPTDVLALPEQ 992 (1051)
T ss_pred cccccceeeeecCCchhhhcccccCCccceeehhceeehhcCCccchhhhcccccccccCccCC-CCCCCCcccccchHH
Confidence 001 012111 338899999999999999999999999999 999999 999999999999753
Q ss_pred ----CCCCeEEEEEcCCCCCcccccCCCcccCCCChhhhhhhhcccCChhHHHHHHHHH
Q psy2279 766 ----YTEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAY 820 (830)
Q Consensus 766 ----~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~~~~~d~~~~~~~~~~~~rk~~~~a~ 820 (830)
..+.+++|+|||++++|||+|++++.+||+|.+.|+.+|.+|++..+||+|+.||
T Consensus 993 ~~~~~~~~l~~~L~~~n~~~~~~~~~s~~~~l~~~~~~d~~~~~~~~~~~~r~~~~~~~ 1051 (1051)
T KOG0955|consen 993 RTNKAPETLFLVLFFDNKRCWQWLPRSKVLELGVDSTSDKIKMLEGRNIEIRKSVQIAY 1051 (1051)
T ss_pred HhcccChhheEEEeecccccccccCCCCcccccchhhhhhhhhccCCChhhhccccccC
Confidence 7899999999999999999999999999999999999999999999999999986
No 2
>KOG0954|consensus
Probab=100.00 E-value=4.5e-77 Score=665.24 Aligned_cols=427 Identities=34% Similarity=0.598 Sum_probs=349.4
Q ss_pred ccccccccccchhHHHHHHhhccCCcccCCCCCceEEEcCCCCCCC-CCCCCcCceecccCChhh----------ccccc
Q psy2279 8 DFEHEYGQASSDNRQLVLEALQRSQEAVTKLPEPCFKELDDYKHLD-SISRPTAYIRFIEKNADE----------LDEEV 76 (830)
Q Consensus 8 ~~~~~~~~~~~~~~q~~~~~v~~~~~~~~~lP~p~~~~~~~~~~~~-~~~~p~~Yir~~e~~~ee----------~~~~~ 76 (830)
+.-.+|..+..+|+|+|++|||||+++ ..||+|+|++++....+. -|.+|..||......+.| .++.|
T Consensus 129 ~~p~~y~~~~D~wk~ewekgvQvpasp-d~lpqp~v~~dse~v~~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tc 207 (893)
T KOG0954|consen 129 LNPDEYLDFADPWKQEWEKGVQVPASP-DTLPQPSVRVDSEDVQPETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTC 207 (893)
T ss_pred cCccceeecCCccchhhhccccccCCC-CcCCCcceeccchhcchhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhh
Confidence 333556778899999999999999996 999999999998533344 379999999987654333 35689
Q ss_pred ccCCChhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhhhhhccCCCC-----CCCCCCcccccccCCCcCCCCc
Q psy2279 77 EYDMDEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQ-----DIIDDEAVCCICNDGECQNSNV 151 (830)
Q Consensus 77 eYDmDe~D~~wL~~~N~~r~~~~~~~~s~~~fE~~md~LEkE~~~~~~~~~~~-----~~~~~d~~C~VC~~~e~~~~n~ 151 (830)
.||+|..|.+||+.+|+.|+..|..++.+.+||+||..||.+++.++...... ..++||..|+||..+++++.|+
T Consensus 208 rydid~~d~awL~~~n~e~~~~G~~~l~~~~~eRiieelE~~c~kqi~~~l~~eeglgie~dedviCDvCrspD~e~~ne 287 (893)
T KOG0954|consen 208 RYDIDDMDPAWLQLVNEERAEMGSLELDEGTFERIIEELERRCKKQINHALETEEGLGIEYDEDVICDVCRSPDSEEANE 287 (893)
T ss_pred hcccccccHHHHHHhcchHHhhCCcccchHHHHHHHHHHHHHHHHHHHhhhhhcccceeeccccceeceecCCCccccce
Confidence 99999999999999999999999999999999999999999999888765433 6788999999999999999999
Q ss_pred eEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCCCCcccccCC-CcccccccccCCceeeccCccc
Q psy2279 152 ILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRG-AWAHVVCALWIPEVRFANTVFL 230 (830)
Q Consensus 152 iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~-~W~Hv~Calw~pev~f~n~~~~ 230 (830)
|||||+||++|||.||||..+|+|+|+|+.|... ..+.|+|||++|||||.+.+| +|+|++||||||||+|++...|
T Consensus 288 MVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg--~~ppCvLCPkkGGamK~~~sgT~wAHvsCALwIPEVsie~~ekm 365 (893)
T KOG0954|consen 288 MVFCDKCNICVHQACYGILEVPEGPWLCRTCALG--IEPPCVLCPKKGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKM 365 (893)
T ss_pred eEEeccchhHHHHhhhceeecCCCCeeehhcccc--CCCCeeeccccCCcccccCCCCeeeEeeeeeccceeeccCHhhc
Confidence 9999999999999999999999999999999987 567899999999999999877 8999999999999999999999
Q ss_pred CCccccccccccccCcccccccCCCCcceeeecCCCCCcccchhhhhhcCcccccccccCCCCCCceeeeEEEeCCCCCC
Q psy2279 231 EPIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAHTP 310 (830)
Q Consensus 231 ~pi~~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~~~~~~~~~~~~~~~~~~v~~~~~C~~H~~ 310 (830)
+||+.++.||..||.|.|.+|+.+ .||||||+.++|.++|||+||+.+|+.|+...... ..+.+.+||.+|+.
T Consensus 366 ePItkfs~IpesRwslvC~LCk~k-~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~------D~v~~~s~c~khs~ 438 (893)
T KOG0954|consen 366 EPITKFSHIPESRWSLVCNLCKVK-SGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKEN------DEVKFKSYCSKHSD 438 (893)
T ss_pred CcccccCCCcHHHHHHHHHHhccc-CcceEEecccchhhhccchhhhhcCCeeeeeeccC------Cchhheeecccccc
Confidence 999999999999999999999998 89999999999999999999999999998754332 23667889999986
Q ss_pred CCCCC------CCCC-----CCCc--hHHHHHHHHHHhhhccCCCccccCCCCh--hhHHHHhhhccCchhhHHHHHHHH
Q psy2279 311 PDVQH------RPRL-----PAPS--DEKLKNARLVLAKKRVSVPTVSIPTIPP--ERVQDIAQLISVPKKSQLMNRLIA 375 (830)
Q Consensus 311 ~~~~~------~~~~-----~~~~--~~k~~~~~~~~~~~~~~~p~~~~p~~~~--~~~~~i~~~~~i~~~~~~v~~i~~ 375 (830)
-.-.. +... .... ..+....|.- +-.. ++..+. -+++.|+..+.+. ...|..||+
T Consensus 439 ~~~~~s~g~~~e~p~p~~~~p~~~~~e~~~~s~r~q---~l~~-----~e~ef~~~v~~~diae~l~~~--e~~vs~iyn 508 (893)
T KOG0954|consen 439 HREGKSLGNEAESPHPRCHLPEQSVGEGHRSSDRAQ---KLQE-----LEGEFYDIVRNEDIAELLSMP--EFAVSAIYN 508 (893)
T ss_pred cccccccccccCCCCccccChhhhhhhhhhhhHHHH---HHhh-----cchhHhhhhhHHHHHHHhcCc--hHHHHHHHH
Confidence 44110 0000 0000 0001111100 0000 222222 3677788777654 378999999
Q ss_pred HHHHhhhccCCCCcccccccchhccccccccccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 376 YWTIKRQLRNGVPLLRRLQSSHQARRDEHCKIMSNTPENGNITELYHELKYWQCLRQDLERARLLCELVRKREKMKRELI 455 (830)
Q Consensus 376 YW~LKR~~r~g~PLlrRLq~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~~~LR~DLEr~R~L~elVrKREKlKre~~ 455 (830)
||+|||.+|++.+||..+..+...- . ....+..+.+++.+.+||+||||+|+++.++..|+++++...
T Consensus 509 ywklkrks~~n~~lippk~d~~~~i-----------~-kk~~~~~kv~~kl~ahlrqdlerv~~~~~~~trrekas~s~~ 576 (893)
T KOG0954|consen 509 YWKLKRKSRFNKELIPPKSDEVGLI-----------A-KKLEDLGKVRVKLVAHLRQDLERVRNLCYTKTRREKASNSYA 576 (893)
T ss_pred HHHHhhhccCCCcCCCCcchhccch-----------h-hHHHHhhhhhhHHHHHHHHHHHHhhcccchhcccchhhhhHH
Confidence 9999999999999999887752111 1 223345678899999999999999999999999999999999
Q ss_pred HHHhhhhhccc
Q psy2279 456 KVTEACTMIKL 466 (830)
Q Consensus 456 k~~eei~e~~l 466 (830)
++.++++-.++
T Consensus 577 ki~eq~f~~ql 587 (893)
T KOG0954|consen 577 KIDEQLFPDQL 587 (893)
T ss_pred HHHhHHHHHHH
Confidence 99888775555
No 3
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-72 Score=600.32 Aligned_cols=450 Identities=28% Similarity=0.466 Sum_probs=341.4
Q ss_pred CCcCceecccCCh-hhcccccccCCChhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhhhhhccCCCC----CC
Q psy2279 57 RPTAYIRFIEKNA-DELDEEVEYDMDEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQ----DI 131 (830)
Q Consensus 57 ~p~~Yir~~e~~~-ee~~~~~eYDmDe~D~~wL~~~N~~r~~~~~~~~s~~~fE~~md~LEkE~~~~~~~~~~~----~~ 131 (830)
.|..|-.|+.-+. .-+...+.|||||.|+.||.++|+..-. ..+|++.||++|++||+||++-....... ..
T Consensus 111 s~~e~~Kfi~i~p~~~~~f~v~YdlDe~D~m~l~Ylne~~~~---e~vS~e~fEii~t~lE~EWf~~e~~lp~k~vepi~ 187 (669)
T COG5141 111 SHDEGKKFIDIEPPRGLFFSVIYDLDEYDTMWLRYLNESAID---ENVSEEAFEIIVTRLEKEWFFFEHGLPDKHVEPIE 187 (669)
T ss_pred ChhhhhhceeccCCcCccCceeecccchhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHhhhccCccccccccC
Confidence 3456666664433 3345689999999999999999987443 45999999999999999998877654322 22
Q ss_pred CC--CCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCCCCcccccCCC
Q psy2279 132 ID--DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRGA 209 (830)
Q Consensus 132 ~~--~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~~ 209 (830)
.+ -|..|.+|.+.+++|.|.|||||||+++|||+||||+.+|+|.|+|++|..++..-..|.+||..+||||+|++|+
T Consensus 188 ~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgr 267 (669)
T COG5141 188 PSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGR 267 (669)
T ss_pred CchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCc
Confidence 22 2689999999999999999999999999999999999999999999999999888778999999999999999999
Q ss_pred cccccccccCCceeeccCcccCCccccccccccccCcccccccCCCCcceeeecCCCCCcccchhhhhhcCccccccccc
Q psy2279 210 WAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIR 289 (830)
Q Consensus 210 W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~~~~~~~~~ 289 (830)
|+|++||+|+||++|++..+++||++|.+++.+||++.|+||+.+ .|+||||++.+|+++||||||++||+++.-.-..
T Consensus 268 W~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~-~GtcIqCs~~nC~~aYHVtCArrag~f~~~~~s~ 346 (669)
T COG5141 268 WGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEF-GGTCIQCSYFNCTRAYHVTCARRAGYFDLNIYSH 346 (669)
T ss_pred hHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEccc-Ccceeeecccchhhhhhhhhhhhcchhhhhhhcc
Confidence 999999999999999999999999999999999999999999998 6999999999999999999999999998732122
Q ss_pred CCCCCCceeeeEEEeCCCCCCCCCCCCCCCCCCchHH-------------HHHHHHH---HhhhccCCCccccCCCChhh
Q psy2279 290 DHSGVEPVVVQKLAYCDAHTPPDVQHRPRLPAPSDEK-------------LKNARLV---LAKKRVSVPTVSIPTIPPER 353 (830)
Q Consensus 290 ~~~~~~~~~v~~~~~C~~H~~~~~~~~~~~~~~~~~k-------------~~~~~~~---~~~~~~~~p~~~~p~~~~~~ 353 (830)
++-...+....||++|.|.++.+....+-...+| .+-+++. +.+..-..| +..|.+....
T Consensus 347 ---n~~s~~id~e~~c~kh~p~gy~~~~~~r~f~~~kl~~~~~~T~ip~~~~a~~~~~~~f~k~~wk~p-p~~p~V~~~V 422 (669)
T COG5141 347 ---NGISYCIDHEPLCRKHYPLGYGRMNGLRYFGYEKLRYKNPPTAIPRKVRAARPRATLFMKLCWKQP-PATPSVLSRV 422 (669)
T ss_pred ---cccceeecchhhhcCCCCcchhccchhccccHHHHhccCCccccchhhhccCCchhhhhcccccCC-CCCHHHHHHH
Confidence 1223345557899999999987653221111111 1111100 000000111 1133333333
Q ss_pred HHHHhhhccCchhhHHHHHHHHHHHHhhhccCCCCcccccccchhccccccccccCCCCCCCchHHHHHHHHHHHHHHHh
Q psy2279 354 VQDIAQLISVPKKSQLMNRLIAYWTIKRQLRNGVPLLRRLQSSHQARRDEHCKIMSNTPENGNITELYHELKYWQCLRQD 433 (830)
Q Consensus 354 ~~~i~~~~~i~~~~~~v~~i~~YW~LKR~~r~g~PLlrRLq~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~~~LR~D 433 (830)
.+..+.....+.....+-+||+||.|||+++.|+||+. ++....+.. ..+..+.++|+++...-.+|
T Consensus 423 ~~~~l~~~~~~d~p~~ifdIckyw~mKR~~~~g~PL~~-~~~~~~sl~------------tl~~~~sk~R~~~~~~~LqD 489 (669)
T COG5141 423 EACDLKEKDRQDLPVNIFDICKYWEMKRKSEIGGPLVI-LPDIVYSLK------------TLEDWMSKRRMREVAKALQD 489 (669)
T ss_pred HHHhhhhccccCCCchhhHHHHHHHHhhhhcCCCCcee-chhhhhccc------------ccHHHHHHHHHHHHHHHHHH
Confidence 33333333444445688999999999999999999995 333332332 23445678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHh
Q psy2279 434 LERARLLCELVRKREKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTT 513 (830)
Q Consensus 434 LEr~R~L~elVrKREKlKre~~k~~eei~e~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~t 513 (830)
+-|+..|++++.||..++.++.......++..++|-..+|+ -++...+.-..|..|.+.. +++|. |+.
T Consensus 490 ~YqL~~L~~~~~KR~~~~~qLS~~RKK~~nl~~~P~q~LLq---v~iiDl~v~~~~~~~Ld~~--------l~~~~-~~~ 557 (669)
T COG5141 490 QYQLLTLVESTAKRQLLKCQLSNLRKKFLNLNYFPAQRLLQ---VKIIDLDVDGLFNMPLDNE--------LKRQV-FSY 557 (669)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhccccChHhhhhe---eeEEEeeccchhccchHhH--------hhhce-eee
Confidence 99999999999999999999999999999999999999887 3444455556676676642 44452 444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhHHH
Q psy2279 514 MTNKVKANQYLSLEDFENDFNLMVEN 539 (830)
Q Consensus 514 I~~kl~~~~Y~s~~eF~~Dv~LI~~N 539 (830)
+..++..-..+...-|..||...|.-
T Consensus 558 ~i~~~~~~e~~~~~I~~~dvi~~~d~ 583 (669)
T COG5141 558 QIGSISSLEKKLEPIWDVDVIQCIDD 583 (669)
T ss_pred eecccccccccccchhHHHHHHHHHH
Confidence 45555555566666666665554443
No 4
>KOG0956|consensus
Probab=100.00 E-value=2.8e-42 Score=383.22 Aligned_cols=168 Identities=46% Similarity=1.008 Sum_probs=153.4
Q ss_pred ccccccCCCcCCCCceEEec--CcCcccccccccccccCCCceeeeccCC-CCCCCcccccCCCCCCCcccccCCCcccc
Q psy2279 137 VCCICNDGECQNSNVILFCD--MCNLAVHQDCYGVPYIPEGQWLCRRCLH-TPSRAVDCVLCPNNGGAFKLTDRGAWAHV 213 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~CyGi~~ipeg~W~C~~C~~-~~~~~~~C~lC~~~gGa~k~t~~~~W~Hv 213 (830)
-||||-|...+..|.||||| +|-++|||.||||..+|+|.|||++|+. .....+.|.|||.++||||+|++|-|+||
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 59999999999999999999 8999999999999999999999999984 23456899999999999999999999999
Q ss_pred cccccCCceeeccCcccCCccccccccccccCcccccccCC------CCcceeeecCCCCCcccchhhhhhcCccccccc
Q psy2279 214 VCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQR------GVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDT 287 (830)
Q Consensus 214 ~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~------g~GacIqC~~~~C~~~fHvtCA~~aG~~~~~~~ 287 (830)
+||||||||.|+|...||||. +..||..|++..||||... ..|||++|...+|.++||||||+++||..+.+.
T Consensus 87 VCALYIPEVrFgNV~TMEPIi-Lq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~g 165 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPII-LQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEG 165 (900)
T ss_pred EEEeeccceeeccccccccee-eccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccc
Confidence 999999999999999999998 8999999999999999875 369999999999999999999999999998651
Q ss_pred ccCCCCCCceeeeEEEeCCCCCCC
Q psy2279 288 IRDHSGVEPVVVQKLAYCDAHTPP 311 (830)
Q Consensus 288 ~~~~~~~~~~~v~~~~~C~~H~~~ 311 (830)
....+|+|.=||..|-..
T Consensus 166 ------n~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 166 ------NISDNVKYCGYCKYHFSK 183 (900)
T ss_pred ------cccccceechhHHHHHHH
Confidence 223468888999999753
No 5
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=100.00 E-value=1.3e-36 Score=277.74 Aligned_cols=110 Identities=65% Similarity=1.108 Sum_probs=101.6
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCC-CcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~-g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
++|||||||||+|||||||+|+||.+|+ |++|||+| +.+...+.+++.+.++++|||+|||+++||+||++++|+|||
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p-~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~~Wv~~~~l~pl~ 79 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVP-PDVLTLGEARAQNADERLYLVLFFDNKRTWQWLPGDKLEPLG 79 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCC-chhhhHHHHHhccCCCcEEEEEEecCCCcceecCHHHCcccc
Confidence 5799999999999999999999999999 99999998 444444455555689999999999999999999999999999
Q ss_pred CChhhhhhhhcccCChhHHHHHHHHHHHHHhh
Q psy2279 795 ITDELDQIKLMESRKPADRKAVKKAYQEALVH 826 (830)
Q Consensus 795 ~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~ 826 (830)
+|+.+|++||+++||+++||+|+.||++||+|
T Consensus 80 ~~~~~D~~kl~~~rk~~~rk~~~~Ay~~Al~~ 111 (111)
T cd05839 80 VDETLDKLKLKEGRKPSIRKAVQKAYDDALSH 111 (111)
T ss_pred cchhhhhhhhhhccCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998
No 6
>KOG0957|consensus
Probab=99.97 E-value=7.4e-33 Score=298.99 Aligned_cols=170 Identities=38% Similarity=0.834 Sum_probs=146.6
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccccc---cCC-------CceeeeccCCCCCCCcccccCCCCCCCcccc
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY---IPE-------GQWLCRRCLHTPSRAVDCVLCPNNGGAFKLT 205 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~---ipe-------g~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t 205 (830)
.+|+||.+..+.+-|+||.||+|++.||..|||+.. ||. ..|||+.|..+.+. +.|-|||+++|+||.|
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~-P~CElCPn~~GifKet 198 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL-PHCELCPNRFGIFKET 198 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC-CccccCCCcCCccccc
Confidence 389999999999999999999999999999999973 554 36999999998765 8999999999999999
Q ss_pred cCCCcccccccccCCceeeccCcccCCcccccccccccc-CcccccccCC---CCcceeeecCCCCCcccchhhhhhcCc
Q psy2279 206 DRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARW-KLTCYVCKQR---GVGACIQCHKTNCYAAFHVTCAQQAGL 281 (830)
Q Consensus 206 ~~~~W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~-~l~C~iC~~~---g~GacIqC~~~~C~~~fHvtCA~~aG~ 281 (830)
+-|+|||++|||++|+|.|+.+..+.+|+ +..+..+.| ...|.+|..+ ..|+||.|..+.|..+||||||+.+||
T Consensus 199 DigrWvH~iCALYvpGVafg~~~~l~~Vt-l~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~Gl 277 (707)
T KOG0957|consen 199 DIGRWVHAICALYVPGVAFGQTHTLCGVT-LEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGL 277 (707)
T ss_pred chhhHHHHHHHhhcCcccccccccccccc-HHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhhcc
Confidence 99999999999999999999999999998 444444444 4689999886 469999999999999999999999999
Q ss_pred ccccccccCCCCCCceeeeEEEeCCCCCCCCC
Q psy2279 282 YMNMDTIRDHSGVEPVVVQKLAYCDAHTPPDV 313 (830)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~C~~H~~~~~ 313 (830)
.++..... ...+.+.+||.+|+....
T Consensus 278 Lvea~~e~------DiAdpfya~CK~Ht~r~~ 303 (707)
T KOG0957|consen 278 LVEATDEN------DIADPFYAFCKKHTNRDN 303 (707)
T ss_pred eeeccccc------cchhhHHHHHHhhcchhh
Confidence 98754222 244567899999997664
No 7
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.92 E-value=7e-26 Score=210.97 Aligned_cols=110 Identities=53% Similarity=1.103 Sum_probs=101.9
Q ss_pred cccccCCCCCCCcccccCCCcccccccccCCceeeccCcccCCccccccccccccCcccccccCCCCcceeeecCCCCCc
Q psy2279 190 VDCVLCPNNGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYA 269 (830)
Q Consensus 190 ~~C~lC~~~gGa~k~t~~~~W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~ 269 (830)
..|+|||..|||||+|.+++|||++||+|+|++.|.+...++|++ +.+|+.+++++.|.+|++. .|+||+|...+|.+
T Consensus 1 ~~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~-~G~~i~C~~~~C~~ 78 (110)
T PF13832_consen 1 ASCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVD-ISNIPPSRFKLKCSICGKS-GGACIKCSHPGCST 78 (110)
T ss_pred CccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCccc-ceeecchhcCCcCcCCCCC-CceeEEcCCCCCCc
Confidence 369999999999999999999999999999999999999999999 9999999999999999998 79999999999999
Q ss_pred ccchhhhhhcCcccccccccCCCCCCceeeeEEEeCCCC
Q psy2279 270 AFHVTCAQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAH 308 (830)
Q Consensus 270 ~fHvtCA~~aG~~~~~~~~~~~~~~~~~~v~~~~~C~~H 308 (830)
+||++||+++|+++.++.... ...+.+||++|
T Consensus 79 ~fH~~CA~~~g~~~~~~~~~~-------~~~~~~~C~~H 110 (110)
T PF13832_consen 79 AFHPTCARKAGLYFEIENEED-------NVQFIAYCPKH 110 (110)
T ss_pred CCCHHHHHHCCCeEEeeecCC-------CceEEEECCCC
Confidence 999999999999998764332 35678999999
No 8
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.7e-23 Score=189.08 Aligned_cols=97 Identities=55% Similarity=1.015 Sum_probs=94.0
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
|+..+|+.++++|.+++.+.+|..||+..++|||+++|++||||+||++||+++.|.++++|..||.|||+||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~ 564 (830)
|.+|++|.+|++++..+
T Consensus 81 s~~~~~A~~l~~~~~~~ 97 (98)
T cd05512 81 TIFYRAAVRLRDQGGAI 97 (98)
T ss_pred CHHHHHHHHHHHhhccc
Confidence 99999999999987654
No 9
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.5e-23 Score=187.26 Aligned_cols=97 Identities=43% Similarity=0.757 Sum_probs=93.7
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
|+...|..+++.|.+++.+.+|..||+..++|||+++|++||||+||++||+++.|.|+++|.+||+|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~ 564 (830)
|.+|++|.+|...+.++
T Consensus 81 s~~~~~A~~L~~~~~~~ 97 (98)
T cd05513 81 TIYYKAAKKLLHSGMKI 97 (98)
T ss_pred CHHHHHHHHHHHhhhhh
Confidence 99999999998887664
No 10
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=9.1e-23 Score=188.55 Aligned_cols=101 Identities=30% Similarity=0.471 Sum_probs=95.8
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
..+..+++.+|+.|.+++.+.+|..||++. ++||||++|++||||+||++||+++.|.++++|.+|+.|||.||+.||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 346678899999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 545 ~~~s~i~~~A~~L~~~~~~~~~~ 567 (830)
+++|.++.+|..|++.|.+.+++
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988875
No 11
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.5e-22 Score=190.03 Aligned_cols=108 Identities=23% Similarity=0.430 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCC-C
Q psy2279 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK-D 547 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~-~ 547 (830)
+...|..||+.|.+++.+.+|..||+...+|||+++|++||||+||++||+++.|.++++|.+||+|||.||+.||++ +
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~ 85 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKR 85 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2279 548 TIFYKAGIKMKQVGGALINQAAKTLNDAG 576 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~~~~~~e~~~ 576 (830)
+.+|.+|..|.+.|+..+.++....+.+.
T Consensus 86 s~i~~~a~~L~~~F~~~~~~l~~~~~~~~ 114 (119)
T cd05496 86 SRIYSMTLRLSALFEEHIKKIISDWKSAL 114 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887664
No 12
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.7e-22 Score=183.89 Aligned_cols=96 Identities=29% Similarity=0.493 Sum_probs=91.6
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
.|..+|+.++++|. ++.+++|..||+..++||||++|++||||+||++||++|.|+++++|.+|+.|||+||+.||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~ 564 (830)
|.++.+|..|.+.+...
T Consensus 82 s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 HKLTQAAKAIVKICEQE 98 (99)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999998887653
No 13
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.7e-22 Score=183.44 Aligned_cols=94 Identities=30% Similarity=0.384 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHH
Q psy2279 471 SLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIF 550 (830)
Q Consensus 471 ~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i 550 (830)
+.|..|++.|++++.+.+|..||+..++||||++|++||||+||++||+++.|.|+++|.+|+.|||+||+.||+++|.+
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 82 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYV 82 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2279 551 YKAGIKMKQVGGAL 564 (830)
Q Consensus 551 ~~~A~~L~~~~~~~ 564 (830)
+..|.+|++.|...
T Consensus 83 ~~~a~~le~~f~~~ 96 (97)
T cd05505 83 LSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999765
No 14
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.3e-22 Score=185.22 Aligned_cols=101 Identities=31% Similarity=0.480 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHHhhc-ccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 469 LNSLLLQLIDLIKAR-DTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 469 l~~~l~~il~~L~~~-d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
++..|..++++|.++ +.+.+|..||++. ++||||++|++||||+||++||++|.|.++++|.+|+.|||.||+.||+
T Consensus 4 l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 83 (108)
T cd05495 4 LRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNR 83 (108)
T ss_pred HHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 567789999999999 9999999999986 7999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
++|.++++|.+|++.|++.++.+.
T Consensus 84 ~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 84 KTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 15
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.9e-22 Score=183.01 Aligned_cols=99 Identities=26% Similarity=0.455 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCc
Q psy2279 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s 548 (830)
++..|..+++.|.+++.+.+|..||+...+|||+++|++||||+||++||+++.|.++++|.+|+.|||+||+.||++++
T Consensus 4 ~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 83 (104)
T cd05507 4 WKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDH 83 (104)
T ss_pred HHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2279 549 IFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 549 ~i~~~A~~L~~~~~~~~~~ 567 (830)
.++.+|..|++.+.+.+++
T Consensus 84 ~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 84 DVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999988777654
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.3e-22 Score=182.09 Aligned_cols=100 Identities=41% Similarity=0.689 Sum_probs=97.2
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
|+...|..+++.|.+++.+.+|..||+..++|+|+++|++||||+||++||+++.|.|+++|..||.|||+||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~ 567 (830)
|.++++|..|++.|++.+++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998875
No 17
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=6.7e-22 Score=179.94 Aligned_cols=95 Identities=36% Similarity=0.615 Sum_probs=91.8
Q ss_pred hHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHH
Q psy2279 471 SLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIF 550 (830)
Q Consensus 471 ~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i 550 (830)
..|+.||+.|.+++.+.+|..||+...+|+|+++|++||||+||++||+++.|+|+++|.+|+.|||+||+.||++++.+
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 82 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEV 82 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2279 551 YKAGIKMKQVGGALI 565 (830)
Q Consensus 551 ~~~A~~L~~~~~~~~ 565 (830)
+++|..|++.|+..|
T Consensus 83 ~~~a~~l~~~f~~~~ 97 (97)
T cd05503 83 GRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
No 18
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.4e-21 Score=182.16 Aligned_cols=107 Identities=31% Similarity=0.550 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCc
Q psy2279 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s 548 (830)
+..+|+.|+++|.+++.+.+|..||++..+|+||++|++||||+||++||+++.|.++++|.+|+.|||+||..||++++
T Consensus 1 ~~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 1 LSFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred CHHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2279 549 IFYKAGIKMKQVGGALINQAAKTLNDA 575 (830)
Q Consensus 549 ~i~~~A~~L~~~~~~~~~~~~~~~e~~ 575 (830)
.++++|..|++.|...+.++..++...
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~~~~ 107 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKLTQL 107 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999998877543
No 19
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.1e-21 Score=182.52 Aligned_cols=102 Identities=34% Similarity=0.520 Sum_probs=95.7
Q ss_pred cchhhHHHHHHHHHhhc-ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 467 NPLNSLLLQLIDLIKAR-DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~-d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
.++...|..+++.|.++ +.+.+|..||++.++||||++|++||||+||++||+++.|+|+++|.+|+.|||+||+.||+
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35677899999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHHHHHHHH
Q psy2279 546 KDT-IFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 546 ~~s-~i~~~A~~L~~~~~~~~~~~ 568 (830)
+++ .++++|..|++.|...+..+
T Consensus 86 ~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 86 DPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC
Confidence 765 68899999999999988765
No 20
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.4e-21 Score=182.89 Aligned_cols=102 Identities=37% Similarity=0.532 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
.+....|..||+.|..++.+.+|..||+...+||||++|++||||+||++||+++.|.|+++|.+||.|||+||++||++
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH
Q psy2279 547 DTIFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 547 ~s~i~~~A~~L~~~~~~~~~~~ 568 (830)
+|.++++|..|++.|...++++
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988875
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.85 E-value=2.2e-21 Score=180.58 Aligned_cols=103 Identities=33% Similarity=0.563 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
..++.+|+.++++|.+++.+.+|..||+..++||||++|++||||+||++||+++.|.|+++|.+|+.|||+||+.||++
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 81 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPD 81 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C----cHHHHHHHHHHHHHHHHHHHHH
Q psy2279 547 D----TIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 547 ~----s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
+ +.++.+|..|++.+.+.+.+..
T Consensus 82 ~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 82 RDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 5 6899999999999988887653
No 22
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.1e-21 Score=177.09 Aligned_cols=99 Identities=23% Similarity=0.534 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHhhccc------CCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARDT------GDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~------~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
|.+.|+.|++.|..+.. +++|..||+...+||||++|++||||+||++||++|.|.++++|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46678888888888755 899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~ 567 (830)
||+++|.+|.+|..|++.|...+++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988765
No 23
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.1e-20 Score=175.67 Aligned_cols=99 Identities=29% Similarity=0.483 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhc---CCCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 470 NSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKA---NQYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 470 ~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~---~~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
...|..|+..|.+++.+.+|..||+. ++|+|+++|++||||+||++||+. +.|+++++|.+|+.|||+||+.||++
T Consensus 6 ~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 84 (109)
T cd05502 6 QRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEE 84 (109)
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45688999999999999999999999 899999999999999999999998 59999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 547 DTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 547 ~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
+|.++.+|..|++.|++.++++.
T Consensus 85 ~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 85 DSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998764
No 24
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.4e-20 Score=171.98 Aligned_cols=96 Identities=29% Similarity=0.439 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 470 NSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 470 ~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
...|..||+.|++++.+.+|..||+.. ++|+|+++|++||||+||++||+++.|.++++|.+|+.|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 467899999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGALI 565 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~ 565 (830)
|.++.+|.+|++.|+..|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998754
No 25
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=99.83 E-value=3.6e-21 Score=178.68 Aligned_cols=97 Identities=27% Similarity=0.543 Sum_probs=84.0
Q ss_pred CCCccchhhhhccCCCCCceEeeC-CCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 715 TFEQLQLVWAKCRGYPWYPALIIN-PQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 715 ~~~~~~~v~ak~~g~p~~p~~i~~-~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
.|++|||||||++|||||||+|++ |.. |..++..........|||+||+..++|+||+.+.|.||
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~--------------~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf 67 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLL--------------GTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPF 67 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEeccccc--------------chhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHcccc
Confidence 588999999999999999999995 433 33444445556778999999999999999999999999
Q ss_pred CCChhhh--hhhhcccCChhHHHHHHHHHHHHHh
Q psy2279 794 GITDELD--QIKLMESRKPADRKAVKKAYQEALV 825 (830)
Q Consensus 794 ~~~~~~d--~~~~~~~~~~~~rk~~~~a~~~a~~ 825 (830)
+.+++.| ...+++.+|+.++++.++|++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~K~~~~~~~~~a~~~~~~ 101 (110)
T cd05837 68 KGSKQFESEKGEKFKVRKPNIKKARQKADIAIMQ 101 (110)
T ss_pred CCchhhhhhhhhhhhccCCcchhHHHHHHHHHHH
Confidence 9999887 6678899999999999999988875
No 26
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=3.9e-20 Score=168.20 Aligned_cols=95 Identities=20% Similarity=0.303 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHH
Q psy2279 472 LLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFY 551 (830)
Q Consensus 472 ~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~ 551 (830)
.|+.||..|..+..+.+|..+ +..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||+++ .++
T Consensus 6 ~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~ 82 (102)
T cd05501 6 KCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFG 82 (102)
T ss_pred HHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHH
Confidence 489999999999999999653 45899999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2279 552 KAGIKMKQVGGALINQAA 569 (830)
Q Consensus 552 ~~A~~L~~~~~~~~~~~~ 569 (830)
++|..|++.|++.++++.
T Consensus 83 ~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 83 QVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
No 27
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=2.3e-20 Score=171.49 Aligned_cols=95 Identities=32% Similarity=0.575 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhhc---ccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 471 SLLLQLIDLIKAR---DTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 471 ~~l~~il~~L~~~---d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
+.|..||+.|++. +.+.+|..||++. ++|||+++|++||||++|++||+++.|.++++|.+|++|||.||+.||+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~ 82 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP 82 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4688889999884 5689999999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALI 565 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~ 565 (830)
++|.++.+|..|++.|+..|
T Consensus 83 ~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 83 EGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 28
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.7e-20 Score=171.30 Aligned_cols=95 Identities=39% Similarity=0.671 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 470 NSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 470 ~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
.+.|..+++.|.+++.+.+|..||++. .+|||+++|++||||++|++||+++.|.++++|..|+.|||+||+.||+++
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 85 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPE 85 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 467889999999999999999999975 799999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~ 564 (830)
|.++.+|.+|++.|++.
T Consensus 86 s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 86 HPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 29
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3.6e-20 Score=170.26 Aligned_cols=95 Identities=28% Similarity=0.463 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhc---ccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 471 SLLLQLIDLIKAR---DTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 471 ~~l~~il~~L~~~---d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
..|..||+.|+++ +.+.+|..||++. ++|||+++|++||||++|++||+++.|.++++|..|++|||+||+.||+
T Consensus 3 ~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~ 82 (102)
T cd05498 3 KFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNP 82 (102)
T ss_pred hHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4688899999999 7899999999976 6999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALI 565 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~ 565 (830)
++|.++.+|..|++.|+..|
T Consensus 83 ~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 83 PDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 30
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=4.5e-20 Score=169.84 Aligned_cols=96 Identities=31% Similarity=0.579 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHhh------cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~------~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
|++.|+.|++.|.. +..+.+|..||+..++||||++|++||||++|++||+.+.|.|+++|..|++|||.||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678888888884 345889999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~ 564 (830)
||+++|.+|.+|..|++.|...
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998765
No 31
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.81 E-value=6.9e-20 Score=169.04 Aligned_cols=97 Identities=35% Similarity=0.557 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhhc------ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 470 NSLLLQLIDLIKAR------DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 470 ~~~l~~il~~L~~~------d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
.+.|+.+++.|... ..+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||.|||.||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45577777777764 447899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGALIN 566 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~~~~ 566 (830)
|+++|.+|.+|..|++.|.+..+
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998876543
No 32
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.81 E-value=7.4e-20 Score=170.84 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhhc------ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 470 NSLLLQLIDLIKAR------DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 470 ~~~l~~il~~L~~~------d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
...|..|++.|.+. ..+.+|.++++...+||||++|++||||+||++||+++.|.|+++|.+||.|||+||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678888888864 345689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
|+++|.+|++|..|++.|...++++.
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887764
No 33
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=9.5e-20 Score=168.02 Aligned_cols=96 Identities=20% Similarity=0.307 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
|...|+.|++.|.... .+.+|.++++..++||||++|++||||++|++||++|.|.++++|.+|+.|||+||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888777643 3689999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~ 564 (830)
||+++|.++++|..|++.|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999988753
No 34
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.80 E-value=1.2e-19 Score=166.74 Aligned_cols=96 Identities=31% Similarity=0.475 Sum_probs=83.3
Q ss_pred chhhHHHHHHHHHhh--cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 468 PLNSLLLQLIDLIKA--RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 468 pl~~~l~~il~~L~~--~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
|+..++..|...... +..+.+|.++|+..++||||++|++||||+||++||+++.|.++++|..||.|||.||+.||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 444444444433222 246888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGA 563 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~ 563 (830)
++|.+|.+|..|++.|++
T Consensus 84 ~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998875
No 35
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.80 E-value=1.4e-19 Score=166.17 Aligned_cols=94 Identities=33% Similarity=0.580 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 470 NSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 470 ~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
.+.++.+++.|.+.. .+.+|..+++..++||||++|++||||++|++||+.+.|.++.+|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356777777777643 36899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGA 563 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~ 563 (830)
|+++|.++++|..|++.|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 36
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.80 E-value=1.6e-19 Score=165.81 Aligned_cols=82 Identities=29% Similarity=0.567 Sum_probs=78.3
Q ss_pred hcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHH
Q psy2279 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVG 561 (830)
Q Consensus 482 ~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~ 561 (830)
.+..+.+|..+|+..++||||++|++||||+||++||+++.|.|+++|.+|+.|||.||+.||+++|.+|.+|..|+++|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HH
Q psy2279 562 GA 563 (830)
Q Consensus 562 ~~ 563 (830)
+.
T Consensus 100 ~~ 101 (103)
T cd05518 100 KE 101 (103)
T ss_pred Hh
Confidence 65
No 37
>smart00297 BROMO bromo domain.
Probab=99.80 E-value=2e-19 Score=166.33 Aligned_cols=101 Identities=38% Similarity=0.599 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
.++..+|..+++.+.+++.+.+|..||+...+|+|+++|++||||++|++||+++.|.++++|.+||.+||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q psy2279 547 DTIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 547 ~s~i~~~A~~L~~~~~~~~~~ 567 (830)
++.++.+|..|++.|...+++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 38
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=3.3e-19 Score=170.09 Aligned_cols=96 Identities=26% Similarity=0.412 Sum_probs=89.6
Q ss_pred hHHHHHHHHHh---hcccCCcccccCCCC-CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 471 SLLLQLIDLIK---ARDTGDIFLEPVDVI-EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 471 ~~l~~il~~L~---~~d~~~~F~~PV~~~-~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
..+..++++|. .++.+.+|..||+.. .+|+||++|++||||+||++||+++.|+++++|..||.|||.||+.||++
T Consensus 27 ~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~ 106 (128)
T cd05529 27 ERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEP 106 (128)
T ss_pred HHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44556677777 888999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q psy2279 547 DTIFYKAGIKMKQVGGALIN 566 (830)
Q Consensus 547 ~s~i~~~A~~L~~~~~~~~~ 566 (830)
+|.++++|.+|++.|..++.
T Consensus 107 ~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 107 NSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988775
No 39
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.79 E-value=8.4e-20 Score=181.42 Aligned_cols=98 Identities=47% Similarity=0.826 Sum_probs=87.4
Q ss_pred hHHHHHHhhccCCccc-----------CCCCCceEEEcCCCC--CCCCCCCCcCceecccCChhhcccccccCCChhhHH
Q psy2279 20 NRQLVLEALQRSQEAV-----------TKLPEPCFKELDDYK--HLDSISRPTAYIRFIEKNADELDEEVEYDMDEEDAS 86 (830)
Q Consensus 20 ~~q~~~~~v~~~~~~~-----------~~lP~p~~~~~~~~~--~~~~~~~p~~Yir~~e~~~ee~~~~~eYDmDe~D~~ 86 (830)
|+++|++.+|.+.... ..||+|+|+.++ |. +...|.+|.+||+|++++.++++..|+|||||+|+.
T Consensus 50 ~~~e~e~~~q~~~~~~~~~~~~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~e~~~~~veYDmDeeD~~ 128 (160)
T PF10513_consen 50 SKQEWEKHLQKPISASQNSKSKKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSVEDLDEGVEYDMDEEDEE 128 (160)
T ss_pred cccccccccccccchhhhhhcccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCHHHhccCcCCCCchHHHH
Confidence 6779999999985542 349999999888 66 344589999999999888899988999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHh
Q psy2279 87 WLNIMNEQRKISNLPPLAIDTFELLMDRLEKE 118 (830)
Q Consensus 87 wL~~~N~~r~~~~~~~~s~~~fE~~md~LEkE 118 (830)
||+.+|++|+..|..+||+++||.+||+||||
T Consensus 129 wL~~~N~~r~~~~~~~ls~~~FE~~md~lEke 160 (160)
T PF10513_consen 129 WLELLNKKRKSDGLEPLSEEDFEIIMDRLEKE 160 (160)
T ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999986
No 40
>KOG1474|consensus
Probab=99.79 E-value=1.5e-19 Score=214.43 Aligned_cols=113 Identities=30% Similarity=0.487 Sum_probs=105.1
Q ss_pred cccchhhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 465 ~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
.+..+...|..||..|+.+..+++|..|||.. .+|||++||++||||+||+.||+++.|.+..+|.+||+|||.||++
T Consensus 219 ~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 219 LTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMT 298 (640)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHh
Confidence 34556677999999999999999999999975 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGF 577 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~e~~~~ 577 (830)
||+++++||.+|..|++.|+..|..+...++....
T Consensus 299 YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~ 333 (640)
T KOG1474|consen 299 YNPEGSDVYAMAKKLQEVFEERWASMPLEIEESES 333 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999998887776643
No 41
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=5.6e-19 Score=162.90 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhh-cccCCcccccCCC-----CCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 470 NSLLLQLIDLIKA-RDTGDIFLEPVDV-----IEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 470 ~~~l~~il~~L~~-~d~~~~F~~PV~~-----~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
..+|..++..+++ .+...+|..||.. ..+|+|+++|++||||+||++||++|.|+++++|.+||.|||+||..|
T Consensus 2 ~~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 2 NCLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred chhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578889999998 6778999999962 269999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
|+++|.++.+|..|.+.....+++++.
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei~~ 108 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLRELRL 108 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888887777753
No 42
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=6.7e-19 Score=162.16 Aligned_cols=97 Identities=29% Similarity=0.460 Sum_probs=88.5
Q ss_pred chhhHHHHHHHHHhhc------ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHh
Q psy2279 468 PLNSLLLQLIDLIKAR------DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541 (830)
Q Consensus 468 pl~~~l~~il~~L~~~------d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~ 541 (830)
|+...+..|++.|.+. ..+.+|..+|+...+||||++|++||||++|++||..+.|.++++|..|+.|||.||+
T Consensus 1 ~~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 1 PYEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred CHHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4556677777777763 4688999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHH
Q psy2279 542 TYNEKDTIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 542 ~YN~~~s~i~~~A~~L~~~~~~~ 564 (830)
.||++++.+|.+|..|++.|..+
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 43
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=1.9e-18 Score=159.23 Aligned_cols=96 Identities=27% Similarity=0.383 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHhhccc------CCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARDT------GDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~------~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
|.+.|+.+++.+.+... +.+|..+++..++||||++|++||||+||++||++ |.++++|.+|+.|||+||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 45667788888777543 46899999999999999999999999999999998 99999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALIN 566 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~ 566 (830)
||+++|.+|++|..|++.|...+.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887653
No 44
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.75 E-value=8.9e-19 Score=157.46 Aligned_cols=92 Identities=32% Similarity=0.552 Sum_probs=73.7
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGI 795 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~ 795 (830)
|.+|||||||++|||||||+|++|++ .|..++..+.+.....|+|+||++ ++++|+..+.|.||..
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~-------------~p~~~l~~~~~~~~~~~~V~FFg~-~~~~Wv~~~~l~pl~~ 66 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEM-------------LPDSVLKGKKKKNKRTYPVMFFPD-GDYYWVPNKDLKPLTE 66 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHH-------------CCHHHHhcccCCCCCeEEEEEeCC-CcEEEEChhhcccCCH
Confidence 67999999999999999999999854 366677656667788999999986 6999999999999997
Q ss_pred ChhhhhhhhcccCChhHHHHHHHHHHHHHh
Q psy2279 796 TDELDQIKLMESRKPADRKAVKKAYQEALV 825 (830)
Q Consensus 796 ~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~ 825 (830)
++.-+-++... ||+ |.+..||+.|+.
T Consensus 67 ~~~~~~l~~~~-~k~---k~l~~ay~~A~~ 92 (93)
T cd05840 67 EKIAKFLKKPK-RKD---KELIKAYKAAKD 92 (93)
T ss_pred HHHHHHhhcCC-CCC---HHHHHHHHHhcC
Confidence 66444444222 222 788999999875
No 45
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.75 E-value=3.8e-18 Score=150.85 Aligned_cols=84 Identities=37% Similarity=0.642 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHH
Q psy2279 473 LLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYK 552 (830)
Q Consensus 473 l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~ 552 (830)
|+.+++.|.+++.+.+|..||+...+|+|+++|++||||++|++||++|.|.++++|..||.+||.||+.||+++|.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy2279 553 AGIK 556 (830)
Q Consensus 553 ~A~~ 556 (830)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 46
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.73 E-value=1.2e-17 Score=151.01 Aligned_cols=95 Identities=43% Similarity=0.670 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHhhc--ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 470 NSLLLQLIDLIKAR--DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 470 ~~~l~~il~~L~~~--d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
...|..+++.|..+ +.+.+|..||+...+|+|+++|++||||++|++||+++.|.++.+|.+|+.+||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGAL 564 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~ 564 (830)
+.++.+|..|+..|...
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 47
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=99.71 E-value=6.6e-18 Score=150.72 Aligned_cols=87 Identities=40% Similarity=0.784 Sum_probs=68.7
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGI 795 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~ 795 (830)
|.+|||||||++|||||||+|++|... +..+ +....+..|+|+||+ .++++|++.++|.||..
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~-------------~~~~---~~~~~~~~~~V~Ffg-~~~~~wv~~~~l~pf~~ 63 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKD-------------SKKA---KKKAKEGKVLVLFFG-DKTFAWVGAERLKPFTE 63 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEcccccc-------------chhh---hccCCCCEEEEEEeC-CCcEEEeCccceeeccc
Confidence 679999999999999999999999652 2222 334566789999998 68999999999999997
Q ss_pred ChhhhhhhhcccCChhHHHHHHHHHHHHHhh
Q psy2279 796 TDELDQIKLMESRKPADRKAVKKAYQEALVH 826 (830)
Q Consensus 796 ~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~ 826 (830)
+... ..+...++..+.||++|++|
T Consensus 64 ~~~~-------~~~~~k~~~f~~A~~eA~~~ 87 (87)
T cd05162 64 HKES-------EAKQSKRKGFKKAYDEALEE 87 (87)
T ss_pred hHHh-------hccCCccHHHHHHHHHHHhC
Confidence 7743 23334567888888888765
No 48
>KOG1245|consensus
Probab=99.70 E-value=4.3e-17 Score=204.18 Aligned_cols=94 Identities=35% Similarity=0.563 Sum_probs=90.7
Q ss_pred HHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHH
Q psy2279 473 LLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYK 552 (830)
Q Consensus 473 l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~ 552 (830)
|..||..|..++.++||.+||+..+|||||+||++||||+||+.|+..|.|.+.++|..||.|||.||.+||.. |.+++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2279 553 AGIKMKQVGGALINQ 567 (830)
Q Consensus 553 ~A~~L~~~~~~~~~~ 567 (830)
++..|+++|...++.
T Consensus 1385 ag~~l~~ff~~~~~~ 1399 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRK 1399 (1404)
T ss_pred hcchHHHHHHHHHHh
Confidence 999999999985543
No 49
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.62 E-value=2e-16 Score=141.92 Aligned_cols=88 Identities=38% Similarity=0.754 Sum_probs=78.4
Q ss_pred cccccccCCceeeccCc--ccCCccccccccccccCcccccccCCCCcceeeecCCCCCcccchhhhhhcCccccccccc
Q psy2279 212 HVVCALWIPEVRFANTV--FLEPIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIR 289 (830)
Q Consensus 212 Hv~Calw~pev~f~n~~--~~~pi~~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~~~~~~~~~ 289 (830)
|+.||+|+|+|.+.+.. .+.++.+++.++..+++++|++|+++ .||+|+|...+|.++||++||+.+|+.+.... .
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~-~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~-~ 78 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKK-GGACIGCSHPGCSRSFHVPCARKAGCFIEFDE-D 78 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCC-CCeEEEEeCCCCCcEEChHHHccCCeEEEEcc-C
Confidence 89999999999999876 36778899999999999999999986 59999999999999999999999999998763 1
Q ss_pred CCCCCCceeeeEEEeCCCCC
Q psy2279 290 DHSGVEPVVVQKLAYCDAHT 309 (830)
Q Consensus 290 ~~~~~~~~~v~~~~~C~~H~ 309 (830)
...+.+||++|+
T Consensus 79 --------~~~~~~~C~~H~ 90 (90)
T PF13771_consen 79 --------NGKFRIFCPKHS 90 (90)
T ss_pred --------CCceEEEChhcC
Confidence 125789999996
No 50
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.61 E-value=2.2e-15 Score=138.63 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
+..++..+++.++++. .+.+|.+.+. ..|+|+.+|+.||||.+|++||++|.|.++++|.+|+.+||.||++
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~ 81 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH
Confidence 4566777888888763 3778888766 4578889999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
||.++|.+|.+|..|+.+|....+++.
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988877654
No 51
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=99.61 E-value=3.7e-16 Score=130.76 Aligned_cols=63 Identities=43% Similarity=0.942 Sum_probs=51.8
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
|++|||||||++|||||||+|+++++. |..++ +....+..|+|+||++... +|+++++|.||+
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~-------------~~~~~--~~~~~~~~~~V~Ffg~~~~-awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKET-------------PDNIR--KRKRFENLYPVLFFGDKDT-AWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccC-------------ChhHh--hccCCCCEEEEEEeCCCCE-EEECccceeeCC
Confidence 679999999999999999999999652 22222 3346688899999988655 999999999986
No 52
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.59 E-value=9.6e-16 Score=135.06 Aligned_cols=60 Identities=32% Similarity=0.472 Sum_probs=51.7
Q ss_pred CCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 715 TFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 715 ~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
.|.+|||||||++|||||||+|+++.+ . ......|+|+||++ ++.+|++.++|.||.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~----------------~------~~~~~~~~V~FfGt-~~~a~v~~~~l~pf~ 58 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPED----------------W------KPPGKKYPVYFFGT-HETAFLKPEDLFPYT 58 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccc----------------c------CCCCCEEEEEEeCC-CCEeEECHHHceecc
Confidence 588999999999999999999999843 1 23456799999985 789999999999999
Q ss_pred CCh
Q psy2279 795 ITD 797 (830)
Q Consensus 795 ~~~ 797 (830)
.+.
T Consensus 59 ~~~ 61 (83)
T cd05834 59 ENK 61 (83)
T ss_pred cch
Confidence 764
No 53
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=99.58 E-value=2.9e-16 Score=139.58 Aligned_cols=59 Identities=32% Similarity=0.790 Sum_probs=50.1
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
|++|||||||++|||||||+|++|..-. ........++|.||++. +++||+.+.|.||.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~-------------------~~~~~~~~~~V~Ffg~~-~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKS-------------------KKKRKDGHVLVRFFGDN-DYAWVKPSNIKPFS 59 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCT-------------------SCSSSSTEEEEEETTTT-EEEEEEGGGEEECC
T ss_pred CCCCCEEEEEeCCCCCCceEEeeccccc-------------------ccCCCCCEEEEEecCCC-CEEEECHHHhhChh
Confidence 6799999999999999999999984211 12456778999999987 99999999999999
No 54
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.58 E-value=1.3e-15 Score=137.90 Aligned_cols=87 Identities=28% Similarity=0.508 Sum_probs=59.6
Q ss_pred CccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCCC
Q psy2279 717 EQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGIT 796 (830)
Q Consensus 717 ~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~~ 796 (830)
..|||||||+.|||||||+|++|.+ +|++ ++.++. ....++|+||++ ++++|+.++.|.|+...
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~------------~p~~-~~~~~~--~~~~~~V~Ffgs-~~y~Wv~~~~l~pf~e~ 65 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPRE------------VPPN-IQVLRH--CIGEFCVMFFGT-HDYYWVHRGRVFPYQEG 65 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhh------------cChh-HhhccC--CCCeEEEEEeCC-CCEEEeccccccchhhh
Confidence 3699999999999999999999854 4443 333332 225699999965 89999999999999854
Q ss_pred hhhhhhhhcccCChhHHHHHHHH
Q psy2279 797 DELDQIKLMESRKPADRKAVKKA 819 (830)
Q Consensus 797 ~~~d~~~~~~~~~~~~rk~~~~a 819 (830)
..-...+....++...++||++|
T Consensus 66 ~~~~~~~~~~~~~~~f~~AleEA 88 (95)
T cd05838 66 DKGFKEQTKSYLAKRFRKALEEA 88 (95)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 42222222123444455555555
No 55
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.57 E-value=9.8e-16 Score=136.47 Aligned_cols=86 Identities=22% Similarity=0.392 Sum_probs=61.8
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGI 795 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~ 795 (830)
|.+|||||||++|||||||+|++++. .... ......++|.||++ ++.+|+++++|.|+..
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~----------------~~~~---~~~~~~~~V~fFGs-~~~a~v~~~~l~pf~e 60 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITV----------------TSKR---PPVVGMRWVTWFGS-GTFSEVSVDKLSPFSE 60 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhh----------------cccc---cCCCCeEEEEEeCC-CCEeEECHHHCcChhH
Confidence 57899999999999999999999843 1100 23356699999985 7999999999999985
Q ss_pred ChhhhhhhhcccCChhHHHHHHHHHHH
Q psy2279 796 TDELDQIKLMESRKPADRKAVKKAYQE 822 (830)
Q Consensus 796 ~~~~d~~~~~~~~~~~~rk~~~~a~~~ 822 (830)
....= ......++...++||.+|.+.
T Consensus 61 ~~~~f-~~~~~~k~~~f~~Ai~eA~e~ 86 (87)
T cd05835 61 FFKAF-SRYNRKKKGLYKKAIYEALEV 86 (87)
T ss_pred hHHHH-hhhhhhhhHHHHHHHHHHHHc
Confidence 54221 122233556667777766554
No 56
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.56 E-value=2.3e-15 Score=131.32 Aligned_cols=78 Identities=26% Similarity=0.553 Sum_probs=60.7
Q ss_pred CCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 715 TFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 715 ~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
-..||||||||++|||+|||+|+++++ ..|+|+||+..++++||+.+.|.||.
T Consensus 6 c~~p~dLVwAK~kGyp~WPAkV~~~~~---------------------------~~~~V~FFG~t~~~a~v~~~~i~~~~ 58 (83)
T cd05841 6 CRPPHELVWAKLKGFPYWPAKVMRVED---------------------------NQVDVRFFGGQHDRAWIPSNNIQPIS 58 (83)
T ss_pred cCCCCCEEEEeCCCCCCCCEEEeecCC---------------------------CeEEEEEcCCCCCeEEEehHHeeehh
Confidence 456999999999999999999998743 35999999988999999999999997
Q ss_pred CChhhhhhhhcccCChhHHHHHHHHHHHHHhh
Q psy2279 795 ITDELDQIKLMESRKPADRKAVKKAYQEALVH 826 (830)
Q Consensus 795 ~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~ 826 (830)
.+.. +....+ -++..++|+++|-.|
T Consensus 59 ~~~~----~~~~~~---k~~~f~~A~~Eie~~ 83 (83)
T cd05841 59 TEIP----QQLVKK---RSRGFNKAMDELELH 83 (83)
T ss_pred hhhh----hhcccc---ccHHHHHHHHHHHhC
Confidence 6542 222222 245677777776655
No 57
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.56 E-value=2.8e-15 Score=133.07 Aligned_cols=63 Identities=27% Similarity=0.678 Sum_probs=52.0
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGI 795 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~ 795 (830)
|.+|||||||++|||||||+|++| |..+... ..+...|+|.||++. +.+|+..+.|.||..
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~----------------~~~~~~~--~~~~~~~~V~FFG~~-~~~wv~~~~l~pF~~ 61 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKP----------------PKDLKKP--RGKAKCFFVFFFGSE-NHAWIKEENIKPYHE 61 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEech----------------hhhcccc--cCCCCeEEEEEeCCC-CEEEECHHhCeechh
Confidence 679999999999999999999997 4444322 233578999999874 999999999999986
Q ss_pred Ch
Q psy2279 796 TD 797 (830)
Q Consensus 796 ~~ 797 (830)
..
T Consensus 62 ~~ 63 (86)
T cd05836 62 HK 63 (86)
T ss_pred hH
Confidence 54
No 58
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.47 E-value=8.2e-14 Score=156.63 Aligned_cols=92 Identities=35% Similarity=0.554 Sum_probs=85.3
Q ss_pred ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHHHH
Q psy2279 484 DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGA 563 (830)
Q Consensus 484 d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~~~ 563 (830)
....+|..+|+..++|+||.+|+.||||.+|++||..+.|+++++|..|++|||.||.+||++++.+|.+|..|++.|..
T Consensus 164 ~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~ 243 (371)
T COG5076 164 FLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLK 243 (371)
T ss_pred ccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy2279 564 LINQAAKTLNDA 575 (830)
Q Consensus 564 ~~~~~~~~~e~~ 575 (830)
.++.+.......
T Consensus 244 ~i~~~~~~~~~~ 255 (371)
T COG5076 244 LIEEIPEEMLEL 255 (371)
T ss_pred HHHhccccchhh
Confidence 998766544333
No 59
>KOG1080|consensus
Probab=99.31 E-value=1.4e-12 Score=158.37 Aligned_cols=143 Identities=38% Similarity=0.816 Sum_probs=128.8
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccccCCC-ceeeeccCCCCCCCcccccCCCCCCCcccccCCCcccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEG-QWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRGAWAHV 213 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg-~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~~W~Hv 213 (830)
-..|.+|.+.+....|.++.|+.|.+.+|+.|||....+.+ .|+|..|... .....|++|+..|||++.++.|+|+|+
T Consensus 573 t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~-~~~r~~~l~~~~g~al~p~d~gr~~~~ 651 (1005)
T KOG1080|consen 573 TERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETL-DIKRSCCLCPVKGGALKPTDEGRWVHV 651 (1005)
T ss_pred cccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhccccc-cCCchhhhccccCcccCCCCccchhhh
Confidence 46899999999999999999999999999999999876554 6999999964 456789999999999999999999999
Q ss_pred cccccCCceeeccCcccCCccccccccccccCcccccccCCCCcceeeecCCCCCcccchhhhhhcCccccc
Q psy2279 214 VCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNM 285 (830)
Q Consensus 214 ~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~~~~~ 285 (830)
-||.|.+++.+++...|+|+.++..+++......|.+ .|-|.||. .|.+.||..||..+|+.+..
T Consensus 652 e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~a~~~~~~~~~ 716 (1005)
T KOG1080|consen 652 ECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI-----HGSCRQCC--KCETGSHAMCASRAGYIMEA 716 (1005)
T ss_pred hchhccccccCCCccCCCCcccccccCccchhhhccc-----cccccccc--hhhhcceehhhcCccChhhh
Confidence 9999999999999999999999999999888887777 37788887 48899999999999988754
No 60
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.25 E-value=6.4e-12 Score=109.20 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=48.6
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCC
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGI 795 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~ 795 (830)
|++|||||||+.|||||||+|.++.. ....|+|.||++.-+-+|+..+.+.|+-.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~-------------------------~~~k~~V~FfG~~~~~a~~~~~~l~p~~~ 55 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISR-------------------------KKQKARVNFIGDNMQSEKKGIRVVKRWLK 55 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecC-------------------------CCCEEEEEEeCCCCceeccchhhcccccc
Confidence 67999999999999999999998722 14569999999877999999999988864
Q ss_pred Ch
Q psy2279 796 TD 797 (830)
Q Consensus 796 ~~ 797 (830)
..
T Consensus 56 ~~ 57 (80)
T cd06080 56 HF 57 (80)
T ss_pred cH
Confidence 44
No 61
>KOG1472|consensus
Probab=99.25 E-value=4.2e-12 Score=148.32 Aligned_cols=105 Identities=37% Similarity=0.539 Sum_probs=98.8
Q ss_pred ccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 466 LNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 466 l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
..++...+..++++|..+..+++|.+||+..++||||++|++||||.||+.+|..+.|..+..|.+|+.+||.||+.||+
T Consensus 604 ~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 604 PGKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred cchhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 35677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
.++.+|+.|..|...|...+.+...
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccchheecccchhhhhcchhhhhhh
Confidence 9999999999999998887776643
No 62
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=99.11 E-value=1.3e-11 Score=91.02 Aligned_cols=35 Identities=63% Similarity=1.465 Sum_probs=22.1
Q ss_pred CCceEEecCcCcccccccccccccCCC-ceeeeccC
Q psy2279 149 SNVILFCDMCNLAVHQDCYGVPYIPEG-QWLCRRCL 183 (830)
Q Consensus 149 ~n~iv~Cd~C~~~vHq~CyGi~~ipeg-~W~C~~C~ 183 (830)
+|+||+|++|+++||+.|||+..+|++ .|+|++|+
T Consensus 1 ~n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 1 TNPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp -CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CCceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 389999999999999999999999887 89999995
No 63
>KOG0008|consensus
Probab=98.81 E-value=9.2e-09 Score=124.66 Aligned_cols=98 Identities=32% Similarity=0.469 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHH
Q psy2279 471 SLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIF 550 (830)
Q Consensus 471 ~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i 550 (830)
.++-.++.++.+...+++|++||+.+.+|+||..|++||||.+|.+++..+.|.+.++|.+|+++|+.|+..||+.++.+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccc
Confidence 56677888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2279 551 YKAGIKMKQVGGALINQA 568 (830)
Q Consensus 551 ~~~A~~L~~~~~~~~~~~ 568 (830)
..-|+++-+++...+.+.
T Consensus 1465 ~~k~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1465 TKKARKIGEVGLANLLEY 1482 (1563)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999998888777665543
No 64
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.78 E-value=4.2e-09 Score=98.71 Aligned_cols=73 Identities=27% Similarity=0.286 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcccCCcccccCCC--CCCCCcccccCCCCCHHhHHHHHhcCCCCC-------HHHHHHHHHHhHHHHhhh
Q psy2279 473 LLQLIDLIKARDTGDIFLEPVDV--IEVPDYADVIKQPMDLTTMTNKVKANQYLS-------LEDFENDFNLMVENCLTY 543 (830)
Q Consensus 473 l~~il~~L~~~d~~~~F~~PV~~--~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s-------~~eF~~Dv~LI~~Na~~Y 543 (830)
+..++.++..++.+++|..||++ ..+|||+++|++||||+||+++|.++.+++ -..+.+++..+..|+..+
T Consensus 8 ~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (114)
T cd05494 8 VLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPS 87 (114)
T ss_pred HHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCcc
Confidence 44556666667799999999999 899999999999999999999999975533 333444455555555544
Q ss_pred CC
Q psy2279 544 NE 545 (830)
Q Consensus 544 N~ 545 (830)
|.
T Consensus 88 ~~ 89 (114)
T cd05494 88 NI 89 (114)
T ss_pred cc
Confidence 43
No 65
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.74 E-value=8.3e-09 Score=95.60 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=39.7
Q ss_pred CCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCc
Q psy2279 507 QPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548 (830)
Q Consensus 507 ~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s 548 (830)
.||||+||++||.+|.|.++.+|.+|+.|||.||..||.++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999999999999999999999999999998643
No 66
>KOG1827|consensus
Probab=98.60 E-value=1e-07 Score=110.57 Aligned_cols=100 Identities=30% Similarity=0.410 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHHhhc------ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHh
Q psy2279 468 PLNSLLLQLIDLIKAR------DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541 (830)
Q Consensus 468 pl~~~l~~il~~L~~~------d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~ 541 (830)
++...+..++..+... .....|.+..+..+.|+||.+|.+||.|..|++|+..+.|.+++.|..||.||+.||+
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 4444555555555543 3467899999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHH
Q psy2279 542 TYNEKDTIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 542 ~YN~~~s~i~~~A~~L~~~~~~~~~~ 567 (830)
.||.+++.+|+++..|...|.....+
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~~~ 157 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLEDE 157 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhhcc
Confidence 99999999999999999998876654
No 67
>KOG1828|consensus
Probab=98.49 E-value=2.8e-08 Score=107.53 Aligned_cols=103 Identities=23% Similarity=0.315 Sum_probs=96.4
Q ss_pred cccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 465 ~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
...|+......++.++.+++.-+.|.-||...-.|+|.+||+.|||+.||+.|++.+.|.++.+|..|..+|..||..||
T Consensus 16 ~~sp~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn 95 (418)
T KOG1828|consen 16 RESPDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYN 95 (418)
T ss_pred hcCcchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhh
Confidence 45678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 545 ~~~s~i~~~A~~L~~~~~~~~~~ 567 (830)
..++.++.+|.+|..+....+++
T Consensus 96 ~~~Tv~~~aaKrL~~v~~~~~qe 118 (418)
T KOG1828|consen 96 LHPTVPIVAAKRLCPVRLGMTQE 118 (418)
T ss_pred cCCccccccccccchhhcchhhH
Confidence 99999999999998877666654
No 68
>KOG0008|consensus
Probab=98.49 E-value=1.9e-07 Score=113.62 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCc
Q psy2279 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s 548 (830)
+.-++..+++++.......+|..||+..+++|||.||+.||||.++++.|....|.+-+.|.+|+.||++|..+||++.+
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2279 549 IFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 549 ~i~~~A~~L~~~~~~~~~~~ 568 (830)
.+...+..|.......+.+-
T Consensus 1342 ~~t~~~q~mls~~~~~~~ek 1361 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLKEK 1361 (1563)
T ss_pred HHHHHHHHHHHHHHHhhchh
Confidence 99999988777666555543
No 69
>KOG0386|consensus
Probab=98.45 E-value=2.3e-07 Score=110.67 Aligned_cols=100 Identities=27% Similarity=0.505 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhh------cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 471 SLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 471 ~~l~~il~~L~~------~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
..+..|+..... +..+..|...++..++||||++|+.||++..|.++|..+.|.+..+...||.++|.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 446666665553 45578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 545 ~~~s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
..+|.+|.+|..|..++.....++..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999988888777765
No 70
>KOG1904|consensus
Probab=98.35 E-value=4.2e-07 Score=103.51 Aligned_cols=63 Identities=37% Similarity=0.558 Sum_probs=50.9
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||.|||.|.++.+ |--.| ..+-|.|.||++. ..+||-++.|.||
T Consensus 11 ~~~~~GDLV~AKlkgyp~WParI~~~~~-------~~~kp-------------~pkky~V~FfGT~-e~Afl~p~dlqpy 69 (496)
T KOG1904|consen 11 GNFKCGDLVFAKLKGYPPWPARIRNGPD-------GAVKP-------------PPKKYTVFFFGTK-ETAFLKPKDLQPY 69 (496)
T ss_pred CCCCCCceeeecccCCCCCcccccCccc-------ccccC-------------CCceeEEEEeccC-cccccchhhccch
Confidence 5788999999999999999999999844 11121 2346999999774 7899999999999
Q ss_pred CCCh
Q psy2279 794 GITD 797 (830)
Q Consensus 794 ~~~~ 797 (830)
-...
T Consensus 70 ~~~k 73 (496)
T KOG1904|consen 70 MLNK 73 (496)
T ss_pred hhhh
Confidence 7554
No 71
>KOG1828|consensus
Probab=98.30 E-value=4.9e-07 Score=98.11 Aligned_cols=95 Identities=20% Similarity=0.132 Sum_probs=88.5
Q ss_pred ccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 464 IKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 464 ~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
...++...++....+++...+....|..++....+|.|.-+|++|++++|++.|+.+..|.| -+|..|+.||+-||++|
T Consensus 204 ~lqtg~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~ 282 (418)
T KOG1828|consen 204 DLQTGGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTN 282 (418)
T ss_pred hhccccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhc
Confidence 34567778888888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCcHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQ 559 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~ 559 (830)
|.+++.+|+.|.++..
T Consensus 283 gehsk~yyelank~lh 298 (418)
T KOG1828|consen 283 GEHSKSYYELANKQLH 298 (418)
T ss_pred CCcchHHHHHHHhhhh
Confidence 9999999999998766
No 72
>KOG1472|consensus
Probab=98.11 E-value=1.4e-06 Score=102.75 Aligned_cols=68 Identities=38% Similarity=0.623 Sum_probs=63.9
Q ss_pred cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHH
Q psy2279 483 RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIF 550 (830)
Q Consensus 483 ~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i 550 (830)
...+.+|..+|+...+|+||.||+.||||+++.+|+..+.|.+.++|+.|+.+||.||..||...+..
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~ 368 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHG 368 (720)
T ss_pred cccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchh
Confidence 56688999999999999999999999999999999999999999999999999999999999875543
No 73
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.07 E-value=1.4e-06 Score=69.59 Aligned_cols=45 Identities=38% Similarity=1.003 Sum_probs=38.7
Q ss_pred ccccccCCCcCCCCceEEecCcCcccccccccccc----cCCCceeeeccC
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY----IPEGQWLCRRCL 183 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~----ipeg~W~C~~C~ 183 (830)
+|.||+. ..+.+.+|+|+.|+..||+.|+|++. ++.+.|+|..|.
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5889998 45679999999999999999999985 345689999986
No 74
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1244|consensus
Probab=97.96 E-value=2.9e-06 Score=87.92 Aligned_cols=48 Identities=40% Similarity=1.018 Sum_probs=42.0
Q ss_pred CcccccccCCCcCCCCceEEecCcCccccccccccccc--CCCceeeeccCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i--peg~W~C~~C~~ 184 (830)
=-.|+||+.. +|+++|+|||.|...||+.|+.++.+ |||.|-|..|..
T Consensus 281 ck~csicgts--enddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 281 CKYCSICGTS--ENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred cceeccccCc--CCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 4568888865 57899999999999999999999876 899999999963
No 76
>KOG4323|consensus
Probab=97.87 E-value=1.3e-05 Score=90.55 Aligned_cols=142 Identities=21% Similarity=0.353 Sum_probs=98.1
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCCCCcccccCCCc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRGAW 210 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~~W 210 (830)
...+...|.||........|.+++|++|..++||.|.-+.....+.|.|..|.+. +=...||++| .|.-
T Consensus 79 ~~~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~--------~~~~~g~a~K---~g~~ 147 (464)
T KOG4323|consen 79 LPSSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFP--------IFSQEGGALK---KGRL 147 (464)
T ss_pred CCccccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCcccccccccc--------cccccccccc---cccc
Confidence 3446789999999888888999999999999999997666556688999999875 2345688888 4455
Q ss_pred ccccccccCCceeeccCcccCCccccccccccccCcccccccCCCCc---ceeeecCCCCCcccchhhhhhcCccccccc
Q psy2279 211 AHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVG---ACIQCHKTNCYAAFHVTCAQQAGLYMNMDT 287 (830)
Q Consensus 211 ~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g~G---acIqC~~~~C~~~fHvtCA~~aG~~~~~~~ 287 (830)
+| |-+.+. +..++.-...+..+.|++|..-+.| -+|||. .|.++||--|-+-.--.+..
T Consensus 148 a~-------~~l~y~-------~~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~-- 209 (464)
T KOG4323|consen 148 AR-------PSLPYP-------EASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELA-- 209 (464)
T ss_pred cc-------ccccCc-------ccccccCccccccceeeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhc--
Confidence 55 222222 2223322334456779999864223 689998 59999999998642222221
Q ss_pred ccCCCCCCceeeeEEEeCCCCCC
Q psy2279 288 IRDHSGVEPVVVQKLAYCDAHTP 310 (830)
Q Consensus 288 ~~~~~~~~~~~v~~~~~C~~H~~ 310 (830)
. ...+.+||.....
T Consensus 210 -~--------D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 210 -G--------DPFYEWFCDVCNR 223 (464)
T ss_pred -c--------CccceEeehhhcc
Confidence 1 1356889998874
No 77
>KOG1512|consensus
Probab=97.84 E-value=4.4e-06 Score=86.97 Aligned_cols=47 Identities=32% Similarity=0.806 Sum_probs=41.8
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeee--ccCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCR--RCLH 184 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~--~C~~ 184 (830)
..|.||+.++-+ ++++|||.|+..+|..|.|...+|.|.|.|+ .|..
T Consensus 315 ~lC~IC~~P~~E--~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 315 ELCRICLGPVIE--SEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCREA 363 (381)
T ss_pred HhhhccCCcccc--hheeccccccCCCCccccccccccCccchhhhHHHHh
Confidence 479999998654 8899999999999999999999999999999 5543
No 78
>KOG4323|consensus
Probab=97.59 E-value=2.9e-05 Score=87.65 Aligned_cols=52 Identities=31% Similarity=0.629 Sum_probs=45.0
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccc------cCCCceeeeccCCCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY------IPEGQWLCRRCLHTP 186 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~------ipeg~W~C~~C~~~~ 186 (830)
+..|+||..+.....|.||+|++|+.-|||.|.-... .+...|+|..|...+
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4569999999888999999999999999999987654 256789999999764
No 79
>KOG4299|consensus
Probab=97.21 E-value=0.00011 Score=84.76 Aligned_cols=49 Identities=39% Similarity=0.897 Sum_probs=42.9
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccc----cCCCceeeeccCCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY----IPEGQWLCRRCLHT 185 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~----ipeg~W~C~~C~~~ 185 (830)
.++|+-|+..+.- |.|+.||+|..+|||.|+.+|. +|.|.|+|..|...
T Consensus 253 ~~fCsaCn~~~~F--~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLF--NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCcccc--ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 3499999987543 8999999999999999999883 79999999999853
No 80
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.21 E-value=0.00028 Score=69.18 Aligned_cols=65 Identities=25% Similarity=0.699 Sum_probs=49.1
Q ss_pred ccccccC-CCcCCCCceEEecCcCccccccccccc--------ccCCCce--eeeccCCCC-------CCCcccccCCCC
Q psy2279 137 VCCICND-GECQNSNVILFCDMCNLAVHQDCYGVP--------YIPEGQW--LCRRCLHTP-------SRAVDCVLCPNN 198 (830)
Q Consensus 137 ~C~VC~~-~e~~~~n~iv~Cd~C~~~vHq~CyGi~--------~ipeg~W--~C~~C~~~~-------~~~~~C~lC~~~ 198 (830)
+|.+|.. ++..+.++||||.||-.+||+.|+|.. .|.++.| -|++|.-.. ...-.|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 5999976 566678999999999999999999964 3555554 699997421 123469999877
Q ss_pred CCC
Q psy2279 199 GGA 201 (830)
Q Consensus 199 gGa 201 (830)
|-+
T Consensus 81 G~~ 83 (175)
T PF15446_consen 81 GPS 83 (175)
T ss_pred CCC
Confidence 644
No 81
>KOG0825|consensus
Probab=97.10 E-value=0.0002 Score=83.53 Aligned_cols=49 Identities=33% Similarity=0.799 Sum_probs=43.7
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcc-cccccccccc--cCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLA-VHQDCYGVPY--IPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~-vHq~CyGi~~--ipeg~W~C~~C~~ 184 (830)
+...|.||...+.+ +.||.||.||.+ ||.+|+.++. ||-+.|+|..|..
T Consensus 214 E~~~C~IC~~~DpE--dVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPE--DVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChH--HhheeecccccceeeccccCcccccccccceecCcchh
Confidence 45689999998654 789999999999 9999999876 8999999999975
No 82
>KOG1084|consensus
Probab=97.10 E-value=0.00018 Score=80.81 Aligned_cols=108 Identities=26% Similarity=0.476 Sum_probs=77.2
Q ss_pred eeccCCCCCCCcccccCCCCCCCcccc-cCCCcccccccccCCceeeccCcccCCccccccccccccCcccccccCCCCc
Q psy2279 179 CRRCLHTPSRAVDCVLCPNNGGAFKLT-DRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVG 257 (830)
Q Consensus 179 C~~C~~~~~~~~~C~lC~~~gGa~k~t-~~~~W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g~G 257 (830)
|+.|... ....|++|+. +..+. ....|+|+.|++|-|.+.+.+...+..+. ..+-..++ +.|..|.+. |
T Consensus 213 ~~~c~~~--~e~~~~l~~~---~~~~d~~~~~~~h~~c~~~~~~~~~~q~~~l~~~~--~~v~r~~~-~~c~~c~k~--g 282 (375)
T KOG1084|consen 213 DDDCNRS--REFFCALSPK---ATIPDIGFELWYHRYCALWAPNVHESQGGQLTNVD--NAVIRFPS-LQCILCQKP--G 282 (375)
T ss_pred hhhhhhh--hhhhhhhcCC---CcCCccchhHHHHHHHHhcCCcceeccCccccCch--hhhhcccc-hhcccccCC--C
Confidence 5555543 3447888874 33444 45689999999999999998775555443 12222333 899999985 9
Q ss_pred ceeeecCCCCCcccchhhhhhcCcccccccccCCCCCCceeeeEEEeCCCCC
Q psy2279 258 ACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAHT 309 (830)
Q Consensus 258 acIqC~~~~C~~~fHvtCA~~aG~~~~~~~~~~~~~~~~~~v~~~~~C~~H~ 309 (830)
+.+.|....|...+|.+|+..+....-. ....++|+.|+
T Consensus 283 a~~~c~~~~~~~~~h~~c~~~~~~~~~~-------------~~r~v~~~~h~ 321 (375)
T KOG1084|consen 283 ATLKCVQASLLSNAHFPCARAKNGIPLD-------------YDRKVSCPRHR 321 (375)
T ss_pred CchhhhhhhhhcccCcccccCcccccch-------------hhhhccCCCCC
Confidence 9999999999999999999765544321 12357999999
No 83
>KOG1474|consensus
Probab=97.03 E-value=0.00016 Score=86.98 Aligned_cols=89 Identities=26% Similarity=0.497 Sum_probs=78.1
Q ss_pred hhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHH
Q psy2279 481 KARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMK 558 (830)
Q Consensus 481 ~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~ 558 (830)
..+..++.|..||+.. .+|+||.+|++|||+.+|..++++..|.+..+-.+||.-+|.||..||...-.++.++..+.
T Consensus 5 ~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~ 84 (640)
T KOG1474|consen 5 RKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLE 84 (640)
T ss_pred ccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccch
Confidence 4566789999999964 68999999999999999999999999999999999999999999999999988999999888
Q ss_pred HHHHHHHHHHH
Q psy2279 559 QVGGALINQAA 569 (830)
Q Consensus 559 ~~~~~~~~~~~ 569 (830)
..|.+.+....
T Consensus 85 ~~~~~~~~~~~ 95 (640)
T KOG1474|consen 85 KLFPKKLRSMP 95 (640)
T ss_pred hhccccccccc
Confidence 76655444433
No 84
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.43 E-value=0.004 Score=59.46 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=59.0
Q ss_pred CCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2279 508 PMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLN 573 (830)
Q Consensus 508 PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~e 573 (830)
|.||.-|++|++.|.|+++.+|.+||..|+.-++.-.+....+-++...++-+|-+++.++..++.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 789999999999999999999999999999999988777777777788888888888888887764
No 85
>KOG1973|consensus
Probab=96.10 E-value=0.0023 Score=69.39 Aligned_cols=49 Identities=35% Similarity=0.851 Sum_probs=40.4
Q ss_pred CCCcccccccCCCcCCCCceEEecC--cC-cccccccccccccCCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDM--CN-LAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~--C~-~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
++..+| +|.. ...+.||-||+ |. -=||..|.|+..-|.|.|+|..|...
T Consensus 217 ~e~~yC-~Cnq---vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYC-ICNQ---VSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEE-Eecc---cccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 344555 6663 35699999997 99 78999999999999999999999853
No 86
>KOG4443|consensus
Probab=95.57 E-value=0.0048 Score=71.80 Aligned_cols=48 Identities=31% Similarity=0.898 Sum_probs=39.7
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccc--cCCCceeeeccC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCL 183 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~--ipeg~W~C~~C~ 183 (830)
+-.+|..|+- ..+.+.+++|+.|.++||-.|.-++. |+.|.|+|..|.
T Consensus 67 ~crvCe~c~~--~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 67 SCRVCEACGT--TGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred Cceeeeeccc--cCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 3467777773 34568899999999999999988765 899999999997
No 87
>KOG0383|consensus
Probab=95.37 E-value=0.0077 Score=72.15 Aligned_cols=45 Identities=40% Similarity=1.161 Sum_probs=39.4
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccccccc--CCCceeeeccC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRCL 183 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i--peg~W~C~~C~ 183 (830)
+...|.||.++ +.++.||.|-.+||..|.|.+.. |.|.|+|.+|.
T Consensus 46 ~~e~c~ic~~~-----g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 46 EQEACRICADG-----GELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred hhhhhhhhcCC-----CcEEEeccccHHHHHHccCCCCCcCCccceeeeeec
Confidence 45689999986 88999999999999999998874 66789999994
No 88
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=95.16 E-value=0.0064 Score=68.89 Aligned_cols=94 Identities=34% Similarity=0.443 Sum_probs=84.3
Q ss_pred HHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHH
Q psy2279 476 LIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGI 555 (830)
Q Consensus 476 il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~ 555 (830)
++......-..++|..++...++|+|++.|..+|++++++.++..+.|....+|..|..++++|+..||+....+++.+.
T Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (371)
T COG5076 271 LITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNAN 350 (371)
T ss_pred cccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhcc
Confidence 34444566778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2279 556 KMKQVGGALINQAA 569 (830)
Q Consensus 556 ~L~~~~~~~~~~~~ 569 (830)
.+...+...++..+
T Consensus 351 ~~~~~~~~~~~~~~ 364 (371)
T COG5076 351 VLEDFVIKKTRLIR 364 (371)
T ss_pred chhhhHhhhhhhhh
Confidence 99888877666543
No 89
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=94.64 E-value=0.016 Score=60.46 Aligned_cols=48 Identities=29% Similarity=0.851 Sum_probs=39.2
Q ss_pred CCCcccccccCCCcCCCCceEEec--CcCcc-cccccccccccCCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCD--MCNLA-VHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd--~C~~~-vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
++..+| -|+.. ..++||-|| +|..- ||..|.|...-|.|.|+|..|+.
T Consensus 219 ~e~lYC-fCqqv---SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 219 GEELYC-FCQQV---SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred CceeEE-Eeccc---ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 345555 68877 458999999 67654 89999999999999999999974
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.44 E-value=0.051 Score=43.85 Aligned_cols=34 Identities=24% Similarity=0.731 Sum_probs=28.9
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
....|.+|++.- .+.++||.|..|+..+|..||.
T Consensus 4 ~~~~C~~Cg~~~-~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKF-KDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcc-cCCCCEEECCCCCCcccHHHHh
Confidence 457899999864 2468999999999999999993
No 91
>KOG1473|consensus
Probab=92.78 E-value=0.086 Score=64.87 Aligned_cols=111 Identities=23% Similarity=0.477 Sum_probs=76.8
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccc--cCCCceeeeccCCCC-CCCcccccCCCCCCCcccccCCCcc
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTP-SRAVDCVLCPNNGGAFKLTDRGAWA 211 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~--ipeg~W~C~~C~~~~-~~~~~C~lC~~~gGa~k~t~~~~W~ 211 (830)
|+.|-+|.+. +.++.|..|...||.+|.-.+. +|+..|-|.-|...+ +..+.|+|=+.+.+...+.+.
T Consensus 344 ddhcrf~~d~-----~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~---- 414 (1414)
T KOG1473|consen 344 DDHCRFCHDL-----GDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTP---- 414 (1414)
T ss_pred cccccccCcc-----cceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccC----
Confidence 7889999987 8999999999999999987765 688999999998543 445568887777665432211
Q ss_pred cccccccCCceeeccCcccCCccccccccccccC--cccccccCCCCcceeeecCCCCCcccch-hhhhhc
Q psy2279 212 HVVCALWIPEVRFANTVFLEPIDSIEAIPAARWK--LTCYVCKQRGVGACIQCHKTNCYAAFHV-TCAQQA 279 (830)
Q Consensus 212 Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~--l~C~iC~~~g~GacIqC~~~~C~~~fHv-tCA~~a 279 (830)
| |....-..-|- -.|.||+.- |..+ |.++.|...||. .|.-+.
T Consensus 415 ---------------------i-G~dr~gr~ywfi~rrl~Ie~~d--et~l-~yysT~pqly~ll~cLd~~ 460 (1414)
T KOG1473|consen 415 ---------------------I-GRDRYGRKYWFISRRLRIEGMD--ETLL-WYYSTCPQLYHLLRCLDRT 460 (1414)
T ss_pred ---------------------C-CcCccccchhceeeeeEEecCC--CcEE-EEecCcHHHHHHHHHhchH
Confidence 1 11111111122 268999873 5544 445789999999 787543
No 92
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=92.48 E-value=0.066 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.945 Sum_probs=22.2
Q ss_pred ccccccccccc--cCCCceeeeccCCC
Q psy2279 161 AVHQDCYGVPY--IPEGQWLCRRCLHT 185 (830)
Q Consensus 161 ~vHq~CyGi~~--ipeg~W~C~~C~~~ 185 (830)
.+|..|+.++. +|+|+|+|..|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 48999999876 89999999999864
No 93
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1081|consensus
Probab=89.24 E-value=0.19 Score=58.40 Aligned_cols=55 Identities=29% Similarity=0.668 Sum_probs=40.9
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..++.|++||-||-+|||||++|+-+ |++| +++... .|+||+. ..|..-..+.++
T Consensus 134 ~~~~~~~~vw~~vg~~~~~~c~vc~~-------------~~~~-----~~~~~~----~~~f~~~---~~~~~~~~~~~~ 188 (463)
T KOG1081|consen 134 KKREVGDLVWSKVGEYPWWPCMVCHD-------------PLLP-----KGMKHD----HVNFFGC---YAWTHEKRVFPY 188 (463)
T ss_pred ccccceeEEeEEcCcccccccceecC-------------cccc-----hhhccc----cceeccc---hhhHHHhhhhhc
Confidence 46789999999999999999999876 3444 222111 8999988 777766666655
No 95
>KOG0957|consensus
Probab=89.12 E-value=0.14 Score=58.07 Aligned_cols=47 Identities=30% Similarity=0.839 Sum_probs=38.5
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccc--cCC----CceeeeccC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPE----GQWLCRRCL 183 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~--ipe----g~W~C~~C~ 183 (830)
...|.||.... +...++.||.|++.||..|+.+|. .|. -.|.|..|-
T Consensus 544 ~ysCgiCkks~--dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKST--DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccch--hhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 45799999864 457899999999999999999886 343 249999994
No 96
>KOG4443|consensus
Probab=88.93 E-value=0.2 Score=58.89 Aligned_cols=75 Identities=23% Similarity=0.462 Sum_probs=51.6
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccc---cCCCceeeeccCCCCCCCcccccCCCCCCCcccc----cC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY---IPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLT----DR 207 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~---ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t----~~ 207 (830)
...|-+|......-.+.|+-|..|+..+|..|..+-. +-.+-|-|..|+ .|.-|. ++|--++. ..
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr-------vCe~c~-~~gD~~kf~~Ck~c 89 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR-------VCEACG-TTGDPKKFLLCKRC 89 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce-------eeeecc-ccCCcccccccccc
Confidence 4578888877667778899999999999999987421 223449999998 588888 44433322 12
Q ss_pred CCcccccccc
Q psy2279 208 GAWAHVVCAL 217 (830)
Q Consensus 208 ~~W~Hv~Cal 217 (830)
..-+|..|..
T Consensus 90 Dvsyh~yc~~ 99 (694)
T KOG4443|consen 90 DVSYHCYCQK 99 (694)
T ss_pred cccccccccC
Confidence 2455666654
No 97
>KOG1044|consensus
Probab=87.79 E-value=0.31 Score=56.42 Aligned_cols=99 Identities=24% Similarity=0.427 Sum_probs=48.1
Q ss_pred eeeeccCCCCC-------CCcccccCCC---CCCCcccccCCCcccccccccCCceeeccCcccCCcc--cccccccccc
Q psy2279 177 WLCRRCLHTPS-------RAVDCVLCPN---NGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPID--SIEAIPAARW 244 (830)
Q Consensus 177 W~C~~C~~~~~-------~~~~C~lC~~---~gGa~k~t~~~~W~Hv~Calw~pev~f~n~~~~~pi~--~i~~i~~~r~ 244 (830)
-+|..|..... ....|.-|.. .|+++.-. +-+| ||.|-.--..-.+-+..+|.--. --+.--...+
T Consensus 114 ~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq~llal-d~qw-hv~cfkc~~c~~vL~gey~skdg~pyce~dy~~~f 191 (670)
T KOG1044|consen 114 CLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQALLAL-DKQW-HVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQAKF 191 (670)
T ss_pred hhhhhhcCcccCCcccccCCccccchhhhhhccceeeee-ccce-eeeeeehhhhcccccceeeccCCCcchhhhhhhhc
Confidence 57777765321 2346777763 24444433 3366 55554322222222333332110 0111122344
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhhcCc
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGL 281 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~ 281 (830)
..+|+.|.+--.|..+|=. + ..||+|||+=..+
T Consensus 192 gvkc~~c~~fisgkvLqag--~--kh~HPtCARCsRC 224 (670)
T KOG1044|consen 192 GVKCEECEKFISGKVLQAG--D--KHFHPTCARCSRC 224 (670)
T ss_pred CeehHHhhhhhhhhhhhcc--C--cccCcchhhhhhh
Confidence 5577777664345555543 2 7799999964433
No 98
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=86.49 E-value=1.3 Score=40.19 Aligned_cols=67 Identities=24% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCCChhhhhhhhcccCC
Q psy2279 730 PWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRK 809 (830)
Q Consensus 730 p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~~~~~d~~~~~~~~~ 809 (830)
-||||+|+.|.--. ++ . -++.-+||+=|-. .-+.=++++.++.++.+.. .|
T Consensus 22 ~W~PALVVsPsc~d--------------dv-~----VkKD~~lVRSFkD-~KfysV~rkd~~e~~~~~~---------~k 72 (96)
T PF08169_consen 22 SWFPALVVSPSCND--------------DV-T----VKKDQCLVRSFKD-GKFYSVARKDVREFDIDSL---------PK 72 (96)
T ss_dssp -EEEEEEE--SS-S--------------S---------TT-EEEEESSS---EEEE-TTTEE---STTS----------H
T ss_pred ceeeEEEEcCCccc--------------ee-e----eccceEEEEEecc-CceEEEEhhhhhhcccccC---------Cc
Confidence 59999999984411 11 1 1234599999944 6677799999998887641 11
Q ss_pred hhHHHHHHHHHHHHHhhc
Q psy2279 810 PADRKAVKKAYQEALVHK 827 (830)
Q Consensus 810 ~~~rk~~~~a~~~a~~~~ 827 (830)
+. -+.+.|+++|+.++
T Consensus 73 ~e--~s~k~al~~A~~Fl 88 (96)
T PF08169_consen 73 SE--SSLKPALDKASTFL 88 (96)
T ss_dssp HH--HHH-HHHHHHHHHH
T ss_pred cc--chhhHHHHHHHHHH
Confidence 11 24566777777665
No 99
>KOG1512|consensus
Probab=85.55 E-value=0.42 Score=50.77 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCcccccccCCCcC----CCCceEEecCcCcccccccccccc-----cCCCceeeeccCCCCCCCcccccCC
Q psy2279 134 DEAVCCICNDGECQ----NSNVILFCDMCNLAVHQDCYGVPY-----IPEGQWLCRRCLHTPSRAVDCVLCP 196 (830)
Q Consensus 134 ~d~~C~VC~~~e~~----~~n~iv~Cd~C~~~vHq~CyGi~~-----ipeg~W~C~~C~~~~~~~~~C~lC~ 196 (830)
....|-+|.++... .-|.++.|..|..+.|..|...+. +-.=.|.|-.|. .|.+|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~-------lC~IC~ 321 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE-------LCRICL 321 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH-------hhhccC
Confidence 35689999987543 356799999999999999987643 233469999998 477776
No 100
>KOG4299|consensus
Probab=84.95 E-value=1.1 Score=52.76 Aligned_cols=45 Identities=33% Similarity=0.846 Sum_probs=37.3
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccccCC---CceeeeccCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPE---GQWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipe---g~W~C~~C~~ 184 (830)
-..|.+|..+ +.++.|+.|.-++|+.|-+...-|+ +.|.|..|..
T Consensus 47 ~ts~~~~~~~-----gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSG-----GNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhc-----CCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 4679999987 7789999999999999988776544 6788888865
No 101
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=84.18 E-value=0.68 Score=36.62 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=25.2
Q ss_pred ccccccCC-CCcceeeecCCCCCcccchhhhhhc
Q psy2279 247 TCYVCKQR-GVGACIQCHKTNCYAAFHVTCAQQA 279 (830)
Q Consensus 247 ~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA~~a 279 (830)
.|.+|++. ..+..|+|. .|..+||..|....
T Consensus 1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCC
Confidence 47889884 358999998 69999999998643
No 102
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=83.76 E-value=1.7 Score=41.14 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=37.1
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
.+..|..|...-.--.|.-..|..|...|=+.|-+. .-.++.|+|.-|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567999998755444566699999999999999554 33567899999974
No 103
>KOG0644|consensus
Probab=83.65 E-value=0.95 Score=54.64 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=50.0
Q ss_pred cCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHHHH
Q psy2279 505 IKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGA 563 (830)
Q Consensus 505 Ik~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~~~ 563 (830)
-.-|..++.|..+|++..|++.+.|..|+..|..||.+|.+.+.-+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 34578999999999999999999999999999999999999877666666666655544
No 104
>KOG0732|consensus
Probab=82.80 E-value=1.1 Score=56.14 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=57.6
Q ss_pred ccCCcccccCCCCC-----CCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHH--HHHHhHHHHhhhCCCC
Q psy2279 484 DTGDIFLEPVDVIE-----VPDYADVIKQPMDLTTMTNKVKANQYLSLEDFEN--DFNLMVENCLTYNEKD 547 (830)
Q Consensus 484 d~~~~F~~PV~~~~-----~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~--Dv~LI~~Na~~YN~~~ 547 (830)
....+|..|++... +++|.++|+++||+.....+++.+.|.++.+|.. ++.|||.|++.||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 34778999988542 5689999999999999999999999999999999 9999999999999875
No 105
>KOG1244|consensus
Probab=82.77 E-value=0.64 Score=49.23 Aligned_cols=101 Identities=20% Similarity=0.428 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhhhhc-cCCC----CCCCCCCcccccccCCCcCC-----CCceEEecCcCcccccccccccc-----cCC
Q psy2279 110 LLMDRLEKECQFQMS-HTQS----QDIIDDEAVCCICNDGECQN-----SNVILFCDMCNLAVHQDCYGVPY-----IPE 174 (830)
Q Consensus 110 ~~md~LEkE~~~~~~-~~~~----~~~~~~d~~C~VC~~~e~~~-----~n~iv~Cd~C~~~vHq~CyGi~~-----ipe 174 (830)
.++|..+++..+..- .+.. ...+...-+|+.|.++.-+| ..+||-|..|+..=|.+|+.... +-.
T Consensus 194 ~~~d~~~~~~~~~~ge~~vkqr~kkd~a~Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~ 273 (336)
T KOG1244|consen 194 YVCDTGTKQTVFAPGEAKVKQRVKKDIAQPNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKT 273 (336)
T ss_pred hhhcccccccccCcchhhHHHhhhcccccCCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHh
Confidence 566666666544331 1100 12334567899999865333 35799999999999999997643 234
Q ss_pred CceeeeccCCCCCCCcccccCCCCCC---CcccccCCCcccccccc
Q psy2279 175 GQWLCRRCLHTPSRAVDCVLCPNNGG---AFKLTDRGAWAHVVCAL 217 (830)
Q Consensus 175 g~W~C~~C~~~~~~~~~C~lC~~~gG---a~k~t~~~~W~Hv~Cal 217 (830)
=.|-|..|+ .|.+|+-... .|-.-+..+=+|+.|.-
T Consensus 274 yrwqcieck-------~csicgtsenddqllfcddcdrgyhmycls 312 (336)
T KOG1244|consen 274 YRWQCIECK-------YCSICGTSENDDQLLFCDDCDRGYHMYCLS 312 (336)
T ss_pred heeeeeecc-------eeccccCcCCCceeEeecccCCceeeEecC
Confidence 479999998 4888885542 22223445778888873
No 106
>KOG1973|consensus
Probab=82.03 E-value=0.54 Score=51.12 Aligned_cols=31 Identities=35% Similarity=0.819 Sum_probs=25.8
Q ss_pred cccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
..| +|.+...|.+|.|+..+|. .|||.+|..
T Consensus 220 ~yC-~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG 251 (274)
T KOG1973|consen 220 TYC-ICNQVSYGKMIGCDNPGCPIEWFHFTCVG 251 (274)
T ss_pred EEE-EecccccccccccCCCCCCcceEEEeccc
Confidence 456 5556557999999999999 999999973
No 107
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=80.40 E-value=1.4 Score=35.09 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=28.2
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.....|++|...-.....+-+.|..|++.+|..|...
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 3467899999865335678999999999999999853
No 108
>KOG0954|consensus
Probab=79.79 E-value=0.78 Score=54.65 Aligned_cols=28 Identities=32% Similarity=0.641 Sum_probs=20.1
Q ss_pred ccccccCCCCcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQRGVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|.+|-++| ||+-.=. .=..+.|++||.
T Consensus 325 pCvLCPkkG-GamK~~~--sgT~wAHvsCAL 352 (893)
T KOG0954|consen 325 PCVLCPKKG-GAMKPTK--SGTKWAHVSCAL 352 (893)
T ss_pred CeeeccccC-CcccccC--CCCeeeEeeeee
Confidence 688998874 7765443 234899999995
No 109
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=79.61 E-value=0.89 Score=36.97 Aligned_cols=53 Identities=26% Similarity=0.552 Sum_probs=40.2
Q ss_pred CCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCCcc
Q psy2279 716 FEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNKLE 791 (830)
Q Consensus 716 ~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~~~ 791 (830)
|+.|+-|+++...=-||+|.|++-+. ..+...|+|.|.+-.+.| .|++.+.|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~-----------------------~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIRE-----------------------KNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEE-----------------------CTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEe-----------------------cCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 56789999999666799999998532 233467999999877666 899998875
No 110
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=78.43 E-value=1.8 Score=50.79 Aligned_cols=82 Identities=20% Similarity=0.500 Sum_probs=52.1
Q ss_pred CceEEecCcCcccccccccccccCCCceeeeccCCCC---------CCCc-ccccCCCCCCCcccccCCCcccccccccC
Q psy2279 150 NVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTP---------SRAV-DCVLCPNNGGAFKLTDRGAWAHVVCALWI 219 (830)
Q Consensus 150 n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~---------~~~~-~C~lC~~~gGa~k~t~~~~W~Hv~Calw~ 219 (830)
..|+||..|..-....|..... ..|||..|.... .+.. .|.-||.=++.|..+.... .
T Consensus 3 ~~L~fC~~C~~irc~~c~~~Ei---~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~~-~-------- 70 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSEEI---DSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASDT-P-------- 70 (483)
T ss_pred ccceecccccccCChhhccccc---ceeECccccccCChhhheeccceeccccccCCCCCCcceeEeccc-c--------
Confidence 4689999999999888876443 369999998532 2334 7888887666554332111 0
Q ss_pred CceeeccCcccCCccccccccccccCcccccccC
Q psy2279 220 PEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQ 253 (830)
Q Consensus 220 pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~ 253 (830)
..+.+.-.......+.+.|.+|.=
T Consensus 71 ----------~~~~~~~~~~~~~~~~l~C~~C~W 94 (483)
T PF05502_consen 71 ----------PSPPDPSSDSGGKPYYLSCSYCRW 94 (483)
T ss_pred ----------cccccccccCCCCCEEEECCCcee
Confidence 012222334455677889999963
No 111
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=77.40 E-value=1.3 Score=34.59 Aligned_cols=35 Identities=20% Similarity=0.496 Sum_probs=27.5
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
....|.+|...-..-..+-+.|+.|++.||..|..
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 35689999876432235788999999999999975
No 112
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=77.10 E-value=0.92 Score=39.42 Aligned_cols=32 Identities=31% Similarity=0.842 Sum_probs=28.0
Q ss_pred ccccccCCCCcceeeecC------------CCCCcccchhhhhh
Q psy2279 247 TCYVCKQRGVGACIQCHK------------TNCYAAFHVTCAQQ 278 (830)
Q Consensus 247 ~C~iC~~~g~GacIqC~~------------~~C~~~fHvtCA~~ 278 (830)
.|.||...-+|.|++|.. +-|..+||..|..+
T Consensus 22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 799999887899999986 35889999999965
No 113
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=76.79 E-value=1.2 Score=31.51 Aligned_cols=28 Identities=21% Similarity=0.644 Sum_probs=12.4
Q ss_pred ccccccCCCcCCCCceEEecCcCccccccc
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAVHQDC 166 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~C 166 (830)
.|.+|+..-.. +....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhc
Confidence 58999886432 58999999999999998
No 114
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=75.23 E-value=0.68 Score=40.07 Aligned_cols=49 Identities=31% Similarity=0.759 Sum_probs=25.2
Q ss_pred CcccccccCCC--cCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 135 EAVCCICNDGE--CQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e--~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
..+|.||++.- ..+++..|-|..|+..|-..||... +-+|.-.|++|..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE-rkeg~q~CpqCkt 59 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE-RKEGNQVCPQCKT 59 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH-HHTS-SB-TTT--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHH-hhcCcccccccCC
Confidence 46899999843 3578899999999999999999743 4678888999873
No 115
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=75.02 E-value=1.7 Score=35.02 Aligned_cols=53 Identities=34% Similarity=0.468 Sum_probs=41.1
Q ss_pred CCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 715 TFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 715 ~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
.+.+|++|-|+...==||+|.|+.... ...+.|.|.|- +...|++...|++|.
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~--------------------------~~~~~V~f~D~-G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDG--------------------------EQLYEVFFIDY-GNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECC--------------------------CCEEEEEEECC-CccEEEeHHHeecCC
Confidence 467899999998333599999998622 14689998875 566899999998875
No 116
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=73.47 E-value=2.3 Score=40.66 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=42.7
Q ss_pred CCCCCccchhhhhcc--CCCCCceEeeC-CCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCC
Q psy2279 713 SHTFEQLQLVWAKCR--GYPWYPALIIN-PQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNK 789 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~--g~p~~p~~i~~-~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~ 789 (830)
...|.+||-|.|+-. ++-|.||.|+. |++ ....+..|+|+|||++ -.++|+..
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~----------------------~~~~~~~~~V~f~ng~--~~~vp~~~ 108 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPER----------------------RASEDKEYTVRFYNGK--TAKVPRGE 108 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccc----------------------cccCCceEEEEEECCC--CCccchhh
Confidence 468899999999964 78899999996 322 0345678999999987 44577776
Q ss_pred cccC
Q psy2279 790 LEPL 793 (830)
Q Consensus 790 ~~~l 793 (830)
+..+
T Consensus 109 ~~~I 112 (124)
T PF15057_consen 109 VIWI 112 (124)
T ss_pred EEEC
Confidence 5544
No 117
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=72.69 E-value=2.6 Score=44.58 Aligned_cols=32 Identities=34% Similarity=0.880 Sum_probs=27.5
Q ss_pred CcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
.++| +|.|-..|-+|-|+..+|. .|||..|..
T Consensus 221 ~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVG 253 (271)
T COG5034 221 ELYC-FCQQVSYGQMVACDNANCKREWFHLECVG 253 (271)
T ss_pred eeEE-EecccccccceecCCCCCchhheeccccc
Confidence 4666 7998778999999999995 799999974
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=71.87 E-value=2.6 Score=43.77 Aligned_cols=42 Identities=24% Similarity=0.720 Sum_probs=32.8
Q ss_pred cccccccCCCcC---CCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 136 AVCCICNDGECQ---NSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 136 ~~C~VC~~~e~~---~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
-+|.+|.+.+.- +.+..+.|..|+..+|..|+.- + -|++|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~--~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----K--SCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----C--CCCCcHh
Confidence 589999876532 4567899999999999999972 1 2888874
No 119
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=71.75 E-value=1.8 Score=37.11 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=13.9
Q ss_pred CcccccccCCCc-CCCCceEEec--CcCcccccccccc
Q psy2279 135 EAVCCICNDGEC-QNSNVILFCD--MCNLAVHQDCYGV 169 (830)
Q Consensus 135 d~~C~VC~~~e~-~~~n~iv~Cd--~C~~~vHq~CyGi 169 (830)
+..|.||..... .+.-..+.|+ .|+..+|..|+--
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 467999998754 3334579998 9999999999863
No 120
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=70.76 E-value=4 Score=37.19 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=25.0
Q ss_pred CCCCCCcccccccCCCcCCCCceEEecCcCcccccccc
Q psy2279 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCY 167 (830)
Q Consensus 130 ~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~Cy 167 (830)
..++++..|.||+..=.. +.++. -.|+..||..|+
T Consensus 73 v~i~~~~~C~vC~k~l~~--~~f~~-~p~~~v~H~~C~ 107 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGN--SVFVV-FPCGHVVHYSCI 107 (109)
T ss_pred EEECCCCCccCcCCcCCC--ceEEE-eCCCeEEecccc
Confidence 467788999999987432 33333 355699999996
No 121
>KOG2261|consensus
Probab=70.26 E-value=2.8 Score=50.90 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHhhhccCCCCcccccccch--hccccccccc-------cC-CCCCCCchHHHHHHHHHHHHHHHhHH
Q psy2279 366 KSQLMNRLIAYWTIKRQLRNGVPLLRRLQSSH--QARRDEHCKI-------MS-NTPENGNITELYHELKYWQCLRQDLE 435 (830)
Q Consensus 366 ~~~~v~~i~~YW~LKR~~r~g~PLlrRLq~~~--~~~~~~~~~~-------~~-~~~~~~~~~~l~~rl~~~~~LR~DLE 435 (830)
..+.+..++.||..||+...+.-|+.+...+. ....+.+..+ ++ ..+ .-..++.++ -|..||.||.
T Consensus 75 dd~~~v~~~e~~veK~~~~e~~~L~p~v~~~~~~~~~s~~py~~~rr~tekmqtrkn-~~nd~aSye---k~l~~~~dl~ 150 (716)
T KOG2261|consen 75 DDQRSVEVYEYWVEKREEKEVPSLIPPVKTEKRDGSASNKPYVAFRRRTEKMQTRKN-RKNDEASYE---KMLKLRRDLS 150 (716)
T ss_pred ccceeeeeeehhhhhhhhhccccccCccccccCCccccCCchhhhhhhhhccccccc-cccchHHHH---HHHHHHHhhh
Confidence 44667789999999999998876887665321 1111111100 00 000 111223333 3679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2279 436 RARLLCELVRKREKMKRELIKVTEACT 462 (830)
Q Consensus 436 r~R~L~elVrKREKlKre~~k~~eei~ 462 (830)
++-.+.|+++.|++.++++.+..-+++
T Consensus 151 ~a~t~~em~~~~e~tk~~L~~~t~ei~ 177 (716)
T KOG2261|consen 151 RAYTILEMEKRREKTKRELLEKTSEIS 177 (716)
T ss_pred HHHHHHHHHHhhhhhHHHhhcchhhhh
Confidence 999999999999999998877665554
No 122
>KOG0383|consensus
Probab=70.15 E-value=2.7 Score=51.08 Aligned_cols=77 Identities=23% Similarity=0.473 Sum_probs=51.1
Q ss_pred CcCcccccccccccc--cCCCceeeeccCCCCCCCcccccCCCCCCCcccccCCCcccccccccCCceeeccCcccCCcc
Q psy2279 157 MCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPID 234 (830)
Q Consensus 157 ~C~~~vHq~CyGi~~--ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~~W~Hv~Calw~pev~f~n~~~~~pi~ 234 (830)
.|..++|..|.-... -|++.|.|+.|..+... ..| .++.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~-~~~-------------~~~~------------------------- 41 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ-VEA-------------KDDD------------------------- 41 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc-ccc-------------ccCC-------------------------
Confidence 488899999987433 36799999999854211 000 0000
Q ss_pred ccccccccccCcccccccCCCCcceeeecCCCCCcccchhhhhhcCc
Q psy2279 235 SIEAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGL 281 (830)
Q Consensus 235 ~i~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~ 281 (830)
+.......|.+|+. .|-.|-|+ .|..+||.+|...-+.
T Consensus 42 -----~~~~~~e~c~ic~~--~g~~l~c~--tC~~s~h~~cl~~pl~ 79 (696)
T KOG0383|consen 42 -----WDDAEQEACRICAD--GGELLWCD--TCPASFHASCLGPPLT 79 (696)
T ss_pred -----cchhhhhhhhhhcC--CCcEEEec--cccHHHHHHccCCCCC
Confidence 11222468999997 47878887 6999999999865333
No 123
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.87 E-value=3.2 Score=47.42 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=11.7
Q ss_pred CCCcccccccccCC
Q psy2279 207 RGAWAHVVCALWIP 220 (830)
Q Consensus 207 ~~~W~Hv~Calw~p 220 (830)
.|.|+|.-|||-..
T Consensus 152 CgH~cH~dCALr~~ 165 (446)
T PF07227_consen 152 CGHWCHLDCALRHE 165 (446)
T ss_pred CCceehhhhhcccc
Confidence 56999999999654
No 124
>KOG4217|consensus
Probab=69.32 E-value=1.8 Score=49.17 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=22.3
Q ss_pred CCcccccCCCcccccccccCCceeeccCcccCCccccccccccccCcccccccC
Q psy2279 200 GAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQ 253 (830)
Q Consensus 200 Ga~k~t~~~~W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~l~C~iC~~ 253 (830)
|-||+|... =+-.+|+- | ...||+ +|.+..|.+|.-
T Consensus 294 GFFKRTVQK-naKYvCla--------n--KnCPVD-------KRrRnRCQyCRf 329 (605)
T KOG4217|consen 294 GFFKRTVQK-NAKYVCLA--------N--KNCPVD-------KRRRNRCQYCRF 329 (605)
T ss_pred HHHHHHHhc-CCeeEeec--------C--CCCCcc-------hhhhhhchhhhH
Confidence 889998742 23334542 2 346776 566778888864
No 125
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=68.83 E-value=2.2 Score=32.89 Aligned_cols=34 Identities=24% Similarity=0.658 Sum_probs=26.4
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
....|.+|...-.... +-+.|..|++.+|..|..
T Consensus 10 ~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 10 KPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCccccccccCcCC-CCcCCCCCCchHHHHHHh
Confidence 4578999988643222 468999999999999974
No 126
>KOG2261|consensus
Probab=68.52 E-value=3 Score=50.66 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=31.8
Q ss_pred ccccccCCChhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHhh
Q psy2279 73 DEEVEYDMDEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKEC 119 (830)
Q Consensus 73 ~~~~eYDmDe~D~~wL~~~N~~r~~~~~~~~s~~~fE~~md~LEkE~ 119 (830)
....+||||.+|+.||.. ...+.+..||.+++++|+-+
T Consensus 21 ~~~p~yd~D~~de~~~s~---------~~~s~~~~~e~~~dR~e~~s 58 (716)
T KOG2261|consen 21 REKPRYDHDSEDEDFLSV---------QMESKPLKFERMRDRLEKCS 58 (716)
T ss_pred CCCCcccccchhHHHhhh---------cccccchhHHHHhcccccCC
Confidence 357999999999999987 23467889999999999854
No 127
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=67.15 E-value=3.9 Score=46.78 Aligned_cols=31 Identities=35% Similarity=0.832 Sum_probs=22.9
Q ss_pred ccccccCCCcC-CCCceEEecCcCcccccccc
Q psy2279 137 VCCICNDGECQ-NSNVILFCDMCNLAVHQDCY 167 (830)
Q Consensus 137 ~C~VC~~~e~~-~~n~iv~Cd~C~~~vHq~Cy 167 (830)
.|.||...+.. |+-.-|.||-|+...|..|-
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCA 161 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCA 161 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhh
Confidence 56677665443 34458899999999999993
No 128
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=63.50 E-value=5.7 Score=28.15 Aligned_cols=27 Identities=22% Similarity=0.673 Sum_probs=21.5
Q ss_pred ccccccCCCcCCCCc-eEEecCcCccccccc
Q psy2279 137 VCCICNDGECQNSNV-ILFCDMCNLAVHQDC 166 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~-iv~Cd~C~~~vHq~C 166 (830)
.|.||+..-. +. ...|+.|+..+|..|
T Consensus 2 ~C~~C~~~~~---~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKID---GFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcC---CCEeEEeCCCCCeEcCcc
Confidence 4899976522 33 899999999999988
No 129
>PF10621 FpoO: F420H2 dehydrogenase subunit FpoO ; InterPro: IPR018288 This entry represents the FpoO subunit of membrane-bound multi-subunit F420H2 dehydrogenase, which oxidises the reduced coenzyme F420H2 to coenzyme F420 and feeds the electrons via an FeS cluster into an energy-conserving electron transport chain [, ]. This enzyme plays a role in the methanogenic pathway in methanogenic archaea. Reduced coenzyme F420H2 is the major cytoplasmic electron carrier of methanogens and a reversible hydride donor, much like NADH []. F420H2 + COB-S-S-CoM = F420 + CoM-SH + CoB-SH Where CoB-S-S-CoM (the heterosulphide of 2-mercaptoethanesulphonate and 7-mercaptoheptanoylthreonine phosphate) is the terminal electron acceptor of the methanogenic pathway, and is reduced with the concomitant generation of a transmembrane proton potential and ATP synthesis. The FpoO subunit of F420H2 dehydrogenase probably participates in the reduction of methanophenazine, where it acts as a special mechanism for the reduction of the methanogenic cofactor [].
Probab=60.32 E-value=2.3 Score=39.16 Aligned_cols=49 Identities=37% Similarity=0.859 Sum_probs=32.1
Q ss_pred EecCcCcccccccccc---c----ccCCCce--eeeccCCCC-------------CCCcccccCCCCCCCc
Q psy2279 154 FCDMCNLAVHQDCYGV---P----YIPEGQW--LCRRCLHTP-------------SRAVDCVLCPNNGGAF 202 (830)
Q Consensus 154 ~Cd~C~~~vHq~CyGi---~----~ipeg~W--~C~~C~~~~-------------~~~~~C~lC~~~gGa~ 202 (830)
-||-|+.+.-.-|--- | ..|+|-| +|+.|..+. -..-.|.||+.+++.+
T Consensus 3 DCdLCg~~~Pt~~PvrV~~Pr~~~~yPeGvwKGLC~~CL~sa~~ty~e~~~~~~s~~~gKC~LCG~kt~l~ 73 (119)
T PF10621_consen 3 DCDLCGRAIPTVCPVRVFAPRLTLAYPEGVWKGLCETCLDSAEKTYQEVNENESSCRSGKCDLCGKKTQLY 73 (119)
T ss_pred ccchhcCcCCceeEEEeecchhhccCcchHHHhhHHHHHHHHHHHHHHHhcccccccccceeccCCcceee
Confidence 3777777765555211 1 1489988 899997431 2345799999887654
No 130
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=58.15 E-value=6.6 Score=27.70 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=12.3
Q ss_pred ccccccCCCCc-ceeeecCCCCCcccchhhh
Q psy2279 247 TCYVCKQRGVG-ACIQCHKTNCYAAFHVTCA 276 (830)
Q Consensus 247 ~C~iC~~~g~G-acIqC~~~~C~~~fHvtCA 276 (830)
.|.+|+..+.| .--.|. .|.-.+|..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS--ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T--TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc--cCCCccChhcC
Confidence 58999998655 667785 59999999997
No 131
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=57.58 E-value=12 Score=31.63 Aligned_cols=36 Identities=17% Similarity=0.469 Sum_probs=28.4
Q ss_pred CCcccccccCCCcC-CCCceEEecCcCcccccccccc
Q psy2279 134 DEAVCCICNDGECQ-NSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 134 ~d~~C~VC~~~e~~-~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
....|..|+..... -.+....|..|+..+|.+--|.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 56789999987655 4677999999999998765543
No 132
>PLN02400 cellulose synthase
Probab=57.44 E-value=7.3 Score=49.34 Aligned_cols=50 Identities=26% Similarity=0.694 Sum_probs=40.7
Q ss_pred CcccccccCCC--cCCCCceEEecCcCcccccccccccccCCCceeeeccCCC
Q psy2279 135 EAVCCICNDGE--CQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 135 d~~C~VC~~~e--~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
..+|.||+|.- ..+++..|-|..|+-.|-..||.. ..-||.=.|++|...
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTR 87 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCc
Confidence 45999999853 357788999999999999999943 356888899999853
No 133
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=57.25 E-value=6.4 Score=49.78 Aligned_cols=49 Identities=29% Similarity=0.688 Sum_probs=40.2
Q ss_pred CcccccccCCC--cCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 135 EAVCCICNDGE--CQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e--~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
-.+|.||+|.- ..+++..|-|.-|+-.|-..||- ...-||.=.|.+|..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCkt 67 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKT 67 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCC
Confidence 45899999853 35677899999999999999994 335788889999984
No 134
>PLN02436 cellulose synthase A
Probab=57.15 E-value=6.8 Score=49.49 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=40.6
Q ss_pred CcccccccCCC--cCCCCceEEecCcCcccccccccccccCCCceeeeccCCC
Q psy2279 135 EAVCCICNDGE--CQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 135 d~~C~VC~~~e--~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
..+|.||+|.- ..+++..|-|.-|+-.|-..||. ...-+|.=.|.+|...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTR 87 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCc
Confidence 45999999853 45778899999999999999994 3356788899999743
No 135
>KOG0825|consensus
Probab=54.50 E-value=5.1 Score=48.30 Aligned_cols=31 Identities=23% Similarity=0.754 Sum_probs=24.3
Q ss_pred CcccccccCCC-CcceeeecCCCCCcc-cchhhhh
Q psy2279 245 KLTCYVCKQRG-VGACIQCHKTNCYAA-FHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g-~GacIqC~~~~C~~~-fHvtCA~ 277 (830)
.-.|.||.... .-+.|-|+ .|... ||+.|.-
T Consensus 215 ~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLD 247 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLD 247 (1134)
T ss_pred cccceeeccCChHHhheeec--ccccceeeccccC
Confidence 35799998752 35889998 69888 9999963
No 136
>PLN02195 cellulose synthase A
Probab=52.66 E-value=8.7 Score=48.18 Aligned_cols=48 Identities=25% Similarity=0.637 Sum_probs=39.3
Q ss_pred cccccccCC--CcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 136 AVCCICNDG--ECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 136 ~~C~VC~~~--e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
.+|.||++. -..+++..|-|.-|+-.|-..||. ...-||.=-|.+|..
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt 56 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGG 56 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCC
Confidence 589999983 345678899999999999999994 335788888999974
No 137
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=52.61 E-value=10 Score=26.84 Aligned_cols=28 Identities=36% Similarity=0.835 Sum_probs=22.8
Q ss_pred ccccccCCCCcc-eeeecCCCCCcccchhhh
Q psy2279 247 TCYVCKQRGVGA-CIQCHKTNCYAAFHVTCA 276 (830)
Q Consensus 247 ~C~iC~~~g~Ga-cIqC~~~~C~~~fHvtCA 276 (830)
.|.+|++...|. --.|. .|...+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCS--ECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeC--CCCCeEcCccC
Confidence 589999886677 77884 57799999997
No 138
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.40 E-value=8.9 Score=48.42 Aligned_cols=50 Identities=26% Similarity=0.666 Sum_probs=40.2
Q ss_pred CCcccccccCCC--cCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGE--CQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e--~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
...+|.||++.- ..+++..|-|.-|+-.|-..||. ...-||.=.|.+|..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t 65 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNT 65 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCC
Confidence 356899999853 35677899999999999999994 335778888888874
No 139
>KOG2114|consensus
Probab=51.96 E-value=12 Score=45.89 Aligned_cols=42 Identities=21% Similarity=0.576 Sum_probs=33.0
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
....|+.|... -+.-..=-.|+-+|||.|.+ ++...|++|..
T Consensus 839 q~skCs~C~~~----LdlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGT----LDLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCc----cccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 34689999874 34445556999999999998 67788999985
No 140
>KOG3799|consensus
Probab=50.33 E-value=13 Score=35.62 Aligned_cols=53 Identities=23% Similarity=0.547 Sum_probs=34.1
Q ss_pred CCCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCC--CceeeeccC
Q psy2279 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPE--GQWLCRRCL 183 (830)
Q Consensus 130 ~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipe--g~W~C~~C~ 183 (830)
..+.+|..|.||....- .++.=-.|.-|++.+-.-|-|-...-. --|.|..|.
T Consensus 60 aGv~ddatC~IC~KTKF-ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~ 114 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKF-ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCR 114 (169)
T ss_pred cccCcCcchhhhhhccc-ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCc
Confidence 45678999999986532 223444677777777777766544432 247777765
No 141
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.22 E-value=13 Score=30.25 Aligned_cols=38 Identities=29% Similarity=0.595 Sum_probs=31.5
Q ss_pred CcccccccCCC--CcceeeecCCCCCcccchhhhhhcCcccc
Q psy2279 245 KLTCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQQAGLYMN 284 (830)
Q Consensus 245 ~l~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~~aG~~~~ 284 (830)
.-.|.+|+++. .+.-++|- .|.+.||-.|...+|-...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECC--CCCCcccHHHHhhCCceEe
Confidence 35799999984 57889996 5999999999988887654
No 142
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=50.07 E-value=11 Score=29.08 Aligned_cols=30 Identities=27% Similarity=0.707 Sum_probs=16.3
Q ss_pred cccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 248 CYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 248 C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
|.+|+.- .-.-+.|...+|...+|+.|+..
T Consensus 1 C~~C~~i-v~~G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 1 CEACKEI-VTQGQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -TTT-SB--SSSEE-SS--S--EE-HHHHHH
T ss_pred Ccccchh-HeeeccCCCCccCchHHHHHHHH
Confidence 6778774 33447899889999999999965
No 143
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=48.99 E-value=2.4 Score=33.35 Aligned_cols=31 Identities=35% Similarity=0.757 Sum_probs=18.5
Q ss_pred cccccCCCcCCCCceEEecCcCc---ccccccccc
Q psy2279 138 CCICNDGECQNSNVILFCDMCNL---AVHQDCYGV 169 (830)
Q Consensus 138 C~VC~~~e~~~~n~iv~Cd~C~~---~vHq~CyGi 169 (830)
|-||++++.++.-.+.-| .|.- .||+.|+-.
T Consensus 1 CrIC~~~~~~~~~li~pC-~C~Gs~~~vH~~CL~~ 34 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPC-RCKGSMKYVHRSCLER 34 (47)
T ss_dssp ETTTTEE-SSSS-EE-SS-S-SSCCGSEECCHHHH
T ss_pred CeEeCCcCCCCCceeccc-ccCCCcchhHHHHHHH
Confidence 678998876544223333 3555 999999853
No 144
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=48.26 E-value=7.7 Score=29.96 Aligned_cols=46 Identities=26% Similarity=0.306 Sum_probs=31.1
Q ss_pred cchhhhhccC-CCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcc
Q psy2279 719 LQLVWAKCRG-YPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLE 791 (830)
Q Consensus 719 ~~~v~ak~~g-~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~ 791 (830)
|++|.|+... --||+|.|..-. ....+.|+|.|-- .-..++.+.|+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~--------------------------~~~~~~V~f~DyG-~~~~v~~~~l~ 47 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL--------------------------SDGKVEVFFVDYG-NTEVVPLSDLR 47 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC--------------------------CCCcEEEEEEcCC-CcEEEeHHHcC
Confidence 5677788764 569999999852 1345899999754 33556655554
No 145
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=48.23 E-value=9.9 Score=34.59 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=20.5
Q ss_pred cccccccCC-CCcceeeecCCCCCcccchhhhhh
Q psy2279 246 LTCYVCKQR-GVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
..|.+|+++ |.++.+-. -|...||..|+.+
T Consensus 79 ~~C~vC~k~l~~~~f~~~---p~~~v~H~~C~~r 109 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVF---PCGHVVHYSCIKR 109 (109)
T ss_pred CCccCcCCcCCCceEEEe---CCCeEEecccccC
Confidence 469999998 22333332 3669999999853
No 146
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=48.01 E-value=7.6 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=23.4
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
+.|.||.+.-.. ++.++... |+-.||..|+..
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~-C~H~fh~~Ci~~ 32 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLP-CGHVFHRSCIKE 32 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEET-TSEEEEHHHHHH
T ss_pred CCCcCCChhhcC-CCeEEEcc-CCCeeCHHHHHH
Confidence 369999986433 45566665 999999999753
No 147
>PLN02189 cellulose synthase
Probab=47.63 E-value=12 Score=47.45 Aligned_cols=49 Identities=29% Similarity=0.650 Sum_probs=40.3
Q ss_pred CcccccccCCCc--CCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 135 EAVCCICNDGEC--QNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e~--~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
...|.||++.-. .+++..|-|.-|+-.|-..||. ...-||.=.|.+|..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt 84 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKT 84 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCC
Confidence 458999998644 5778899999999999999994 335678889999974
No 148
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=45.81 E-value=10 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.703 Sum_probs=24.6
Q ss_pred cccccccCCCCcceeeecC---------CCCCcccchhhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHK---------TNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~---------~~C~~~fHvtCA~~ 278 (830)
-.|.||.....|.|-.|.. +.|...||..|..+
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~k 63 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILK 63 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHH
Confidence 3677777765667766655 36999999999864
No 149
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=44.61 E-value=13 Score=34.36 Aligned_cols=29 Identities=28% Similarity=0.752 Sum_probs=25.6
Q ss_pred CcccccccCCCcCCCCceEEecC--cCcccccccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCDM--CNLAVHQDCY 167 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~--C~~~vHq~Cy 167 (830)
...|.+|+.. .+..+.|.. |...||..|.
T Consensus 55 ~~~C~iC~~~----~G~~i~C~~~~C~~~fH~~CA 85 (110)
T PF13832_consen 55 KLKCSICGKS----GGACIKCSHPGCSTAFHPTCA 85 (110)
T ss_pred CCcCcCCCCC----CceeEEcCCCCCCcCCCHHHH
Confidence 4789999986 488999986 9999999995
No 150
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=41.67 E-value=12 Score=26.32 Aligned_cols=24 Identities=38% Similarity=1.024 Sum_probs=16.1
Q ss_pred CCceeeeccCCC-CCCCcccccCCC
Q psy2279 174 EGQWLCRRCLHT-PSRAVDCVLCPN 197 (830)
Q Consensus 174 eg~W~C~~C~~~-~~~~~~C~lC~~ 197 (830)
+|.|.|..|.+. ......|..|..
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--
T ss_pred CcCccCCCCcCCchHHhhhhhCcCC
Confidence 689999999864 234567999864
No 151
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=40.97 E-value=10 Score=30.12 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=18.8
Q ss_pred ccccccCCCcCCCCceE-Eec--CcCccccccccc
Q psy2279 137 VCCICNDGECQNSNVIL-FCD--MCNLAVHQDCYG 168 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv-~Cd--~C~~~vHq~CyG 168 (830)
+|-||.+++. +.+.++ -|. |-...||+.|+-
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~ 34 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLE 34 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHH
Confidence 5899998333 334443 332 223679999975
No 152
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=40.68 E-value=14 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=28.4
Q ss_pred CcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
-+.|.||........+.-|.|..|++.++..=.|
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 3579999887777788899999999999877655
No 153
>KOG2807|consensus
Probab=39.44 E-value=20 Score=39.42 Aligned_cols=84 Identities=20% Similarity=0.590 Sum_probs=51.6
Q ss_pred cCCCceeeeccCCCC-CCCcccccCCCCCCCccccc--CCCcccccccccCCceeeccCcccCCccccccccccccC--c
Q psy2279 172 IPEGQWLCRRCLHTP-SRAVDCVLCPNNGGAFKLTD--RGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWK--L 246 (830)
Q Consensus 172 ipeg~W~C~~C~~~~-~~~~~C~lC~~~gGa~k~t~--~~~W~Hv~Calw~pev~f~n~~~~~pi~~i~~i~~~r~~--l 246 (830)
+..|.++|++|.... +-+..|.+|...- ..+. ...+-| +-|+.....||..... .
T Consensus 272 ~~~~Gy~CP~CkakvCsLP~eCpiC~ltL---Vss~hLARSyhh-----------------L~PL~~F~Eip~~~~~~~~ 331 (378)
T KOG2807|consen 272 LSGGGYFCPQCKAKVCSLPIECPICSLTL---VSSPHLARSYHH-----------------LFPLKPFVEIPETEYNGSR 331 (378)
T ss_pred cccCceeCCcccCeeecCCccCCccceeE---ecchHHHHHHHh-----------------hcCCcchhhccccccCCCc
Confidence 345779999998653 4566788887331 1100 011222 3456666666665533 3
Q ss_pred ccccccCC-CCcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQR-GVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|+.|+.. -.+.+.+|. .|...|-+.|-.
T Consensus 332 ~Cf~C~~~~~~~~~y~C~--~Ck~~FCldCDv 361 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCE--SCKNVFCLDCDV 361 (378)
T ss_pred ceeeeccccCCCCcEEch--hccceeeccchH
Confidence 49999322 246778996 699999998874
No 154
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=39.18 E-value=17 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=30.0
Q ss_pred CCCcccccccCCCc---------CCCCceEEecCcCccccccccccccc-CCCceeeeccC
Q psy2279 133 DDEAVCCICNDGEC---------QNSNVILFCDMCNLAVHQDCYGVPYI-PEGQWLCRRCL 183 (830)
Q Consensus 133 ~~d~~C~VC~~~e~---------~~~n~iv~Cd~C~~~vHq~CyGi~~i-peg~W~C~~C~ 183 (830)
.+|..|.||+..-. .++-.|+.+. |+-.||..|.--=.- ..++=.|+.|+
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~~~~~~CPmCR 78 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQSSKGQCPMCR 78 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccccCCCCCCCcC
Confidence 45788888865321 2345677666 999999999642111 12233555555
No 155
>KOG0695|consensus
Probab=38.44 E-value=12 Score=41.52 Aligned_cols=39 Identities=31% Similarity=0.534 Sum_probs=31.1
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI 172 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i 172 (830)
--+.|.||.+.--.-+.+-..|-+|.+.||..|.+...+
T Consensus 140 rr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~ 178 (593)
T KOG0695|consen 140 RRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPL 178 (593)
T ss_pred cceeeeechhhhhhcccccceeecceeehhhhhcccccc
Confidence 357899998864445567789999999999999986544
No 156
>KOG1246|consensus
Probab=37.97 E-value=24 Score=45.02 Aligned_cols=50 Identities=32% Similarity=0.971 Sum_probs=41.6
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccc--cCCCceeeeccCCCCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPS 187 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~--ipeg~W~C~~C~~~~~ 187 (830)
...|..|..+..+ ..+ .|++|.-.+|..|-.++. +++|.|.|..|.....
T Consensus 155 ~~~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 155 YPQCNTCSKGKEE--KLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred chhhhccccCCCc--cce-ecccccCcccccccCCCCCcCCcCcccCCccccccc
Confidence 4579999988655 556 999999999999998765 7899999999987643
No 157
>PHA02862 5L protein; Provisional
Probab=37.74 E-value=14 Score=36.10 Aligned_cols=51 Identities=29% Similarity=0.584 Sum_probs=35.4
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNG 199 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~g 199 (830)
++.|-||.+.+.++ ..-=.|.|-..-|||+|+. .|+ ..+....|.+|....
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~-------~WI------n~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQ-------LWI------NYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHH-------HHH------hcCCCcCccCCCCeE
Confidence 46899999986433 3334566889999999985 365 234566788887553
No 158
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=36.93 E-value=21 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.577 Sum_probs=18.2
Q ss_pred cccccccCCCcCCCCceEEecCcCcc
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLA 161 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~ 161 (830)
..|.+|........+...+|+.|+..
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhhhCceE
Confidence 45888887755566677777777643
No 159
>KOG1827|consensus
Probab=36.62 E-value=6.2 Score=47.23 Aligned_cols=75 Identities=5% Similarity=-0.045 Sum_probs=67.2
Q ss_pred CCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHH
Q psy2279 486 GDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560 (830)
Q Consensus 486 ~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~ 560 (830)
...|..-++...+|+|+.+++-||.+....+++..++|.....|..|..+.|.|+-.|+.....++..+..+.+.
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 345666677788999999999999999999999999999999999999999999999999988888888877554
No 160
>KOG1080|consensus
Probab=36.43 E-value=32 Score=43.87 Aligned_cols=92 Identities=26% Similarity=0.449 Sum_probs=55.8
Q ss_pred CCCCccchhhhhc-cCCCCCceEeeCCCCCC--CcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCC--CCCcccccCC
Q psy2279 714 HTFEQLQLVWAKC-RGYPWYPALIINPQMPL--GYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDT--KRTWQWLPRN 788 (830)
Q Consensus 714 ~~~~~~~~v~ak~-~g~p~~p~~i~~~~~p~--g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~--~~~~~w~~~~ 788 (830)
..+..+++||+|+ ++.|.|||+++++..-. |..+++++ +......|.+=+. -+.+.|+-+-
T Consensus 190 ~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~~~~~v~as~~~--------------~~~~~~~~~~s~~~~~~~~~~~r~~ 255 (1005)
T KOG1080|consen 190 EEFTVGDLVWAKSGRNEPPWPAIVIDPIRQAPRGVLASCLP--------------VAACVMFFGNSGVPTERDYAWVRRG 255 (1005)
T ss_pred cccccchhhhcccccCCcccccceeehhhcchhhhhccCcc--------------hhhhheeeeccCCccccchhhhhhc
Confidence 4566899999999 89999999999987644 44444322 1222233344333 3567888888
Q ss_pred CcccCC--CChhhhhhhhcccCChhHHHHHHHH
Q psy2279 789 KLEPLG--ITDELDQIKLMESRKPADRKAVKKA 819 (830)
Q Consensus 789 ~~~~l~--~~~~~d~~~~~~~~~~~~rk~~~~a 819 (830)
++.+.- ++...+.--+.--......++.+.|
T Consensus 256 m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 288 (1005)
T KOG1080|consen 256 MERPFSRPVRPFQDQTELKREKARSFEQALEEA 288 (1005)
T ss_pred cccccchhhhhccccccccccCccchhHHHHHh
Confidence 887766 4444333333333333344455444
No 161
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=35.50 E-value=21 Score=30.56 Aligned_cols=33 Identities=27% Similarity=0.690 Sum_probs=14.0
Q ss_pred cccccccCCC--Cc--ceeeecCCCCCcccchhhhhh
Q psy2279 246 LTCYVCKQRG--VG--ACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~g--~G--acIqC~~~~C~~~fHvtCA~~ 278 (830)
+.|.||.... .| .-+.|.+..|...||..|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 5799997641 22 457899999999999999865
No 162
>KOG2932|consensus
Probab=35.07 E-value=21 Score=38.94 Aligned_cols=43 Identities=33% Similarity=0.784 Sum_probs=29.6
Q ss_pred CceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCC
Q psy2279 150 NVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCP 196 (830)
Q Consensus 150 n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~ 196 (830)
-.+-|||.|+.-+ .-|| ..||-..-||-.|..+.+ .-.|.+|.
T Consensus 88 p~VHfCd~Cd~PI--~IYG-RmIPCkHvFCl~CAr~~~-dK~Cp~C~ 130 (389)
T KOG2932|consen 88 PRVHFCDRCDFPI--AIYG-RMIPCKHVFCLECARSDS-DKICPLCD 130 (389)
T ss_pred cceEeecccCCcc--eeee-cccccchhhhhhhhhcCc-cccCcCcc
Confidence 3488999999765 3466 457888888888876532 33566665
No 163
>KOG3612|consensus
Probab=34.78 E-value=17 Score=42.48 Aligned_cols=52 Identities=8% Similarity=-0.047 Sum_probs=47.3
Q ss_pred CCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcH
Q psy2279 498 VPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTI 549 (830)
Q Consensus 498 ~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~ 549 (830)
.++|..+...|.|..++...+-++.|.....|-++..++-.|-..+.+.+..
T Consensus 145 ~~~~~~lkhep~D~~d~e~~v~eqk~~~q~klp~~t~~lq~~~~~~~gsdae 196 (588)
T KOG3612|consen 145 LATTDFLKHEPIDWDDDEFFVCEQKGARQRKLPRITDELQSSLDSDEGSDAE 196 (588)
T ss_pred chhHHHhhcCccccccchhccccCcccccccccccccccccccccccCCCcc
Confidence 5678889999999999999999999999999999999999998888887666
No 164
>KOG2930|consensus
Probab=34.30 E-value=7 Score=35.81 Aligned_cols=32 Identities=31% Similarity=0.927 Sum_probs=24.9
Q ss_pred ccccccCCCCcceeeecCC-------------CCCcccchhhhhh
Q psy2279 247 TCYVCKQRGVGACIQCHKT-------------NCYAAFHVTCAQQ 278 (830)
Q Consensus 247 ~C~iC~~~g~GacIqC~~~-------------~C~~~fHvtCA~~ 278 (830)
.|.||...-+-.||.|... .|..+||..|..+
T Consensus 48 nCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisr 92 (114)
T KOG2930|consen 48 NCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISR 92 (114)
T ss_pred hhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHH
Confidence 5888876556788888654 4899999999854
No 165
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=34.02 E-value=23 Score=28.98 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=19.6
Q ss_pred CCCccchhhhhc-cCCCCCceEeeCC
Q psy2279 715 TFEQLQLVWAKC-RGYPWYPALIINP 739 (830)
Q Consensus 715 ~~~~~~~v~ak~-~g~p~~p~~i~~~ 739 (830)
.|+.|++|-|+- ..-=||+|.|+.-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~ 27 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKV 27 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEE
Confidence 477899999986 2335999999974
No 166
>KOG0804|consensus
Probab=32.94 E-value=19 Score=41.22 Aligned_cols=60 Identities=18% Similarity=0.389 Sum_probs=35.8
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCCCC----CCcccccCC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPS----RAVDCVLCP 196 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~----~~~~C~lC~ 196 (830)
.-|-..|.||...-.+..+. +.=--|+-+||-.|.--- +.--|+-|++... ....|..|+
T Consensus 172 ~tELPTCpVCLERMD~s~~g-i~t~~c~Hsfh~~cl~~w----~~~scpvcR~~q~p~~ve~~~c~~c~ 235 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTG-ILTILCNHSFHCSCLMKW----WDSSCPVCRYCQSPSVVESSLCLACG 235 (493)
T ss_pred cccCCCcchhHhhcCccccc-eeeeecccccchHHHhhc----ccCcChhhhhhcCcchhhhhhhhhhc
Confidence 34567899998764444343 445689999999997421 1113444443322 234677776
No 167
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.60 E-value=58 Score=38.67 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHhh--hhhhccCCCCCCCCCCcccccccCCCcCCCCceEEecCcC--cccccccccccccCCCce
Q psy2279 102 PLAIDTFELLMDRLEKEC--QFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCN--LAVHQDCYGVPYIPEGQW 177 (830)
Q Consensus 102 ~~s~~~fE~~md~LEkE~--~~~~~~~~~~~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~--~~vHq~CyGi~~ipeg~W 177 (830)
.++...++.+-+.|++.- +..... ..+-.-..|.-|+. .+.|..|+ +.||+. ++.-
T Consensus 182 ~ls~~l~~~i~~~l~~g~qvLvflnr----rGya~~~~C~~Cg~--------~~~C~~C~~~l~~h~~--------~~~l 241 (505)
T TIGR00595 182 FLSPELITAIEQTLAAGEQSILFLNR----RGYSKNLLCRSCGY--------ILCCPNCDVSLTYHKK--------EGKL 241 (505)
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEeC----CcCCCeeEhhhCcC--------ccCCCCCCCceEEecC--------CCeE
Confidence 588888888888887631 111111 23344578988875 46899998 455643 4567
Q ss_pred eeeccCCCCCCCcccccCCC
Q psy2279 178 LCRRCLHTPSRAVDCVLCPN 197 (830)
Q Consensus 178 ~C~~C~~~~~~~~~C~lC~~ 197 (830)
.|..|-+....+..|.-|+.
T Consensus 242 ~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 242 RCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred EcCCCcCcCCCCCCCCCCCC
Confidence 89999987666677888864
No 168
>PRK14873 primosome assembly protein PriA; Provisional
Probab=32.40 E-value=63 Score=39.76 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcccccccCCCcCCCCceEEecCcCc--ccccccccccccCCCceee
Q psy2279 102 PLAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNL--AVHQDCYGVPYIPEGQWLC 179 (830)
Q Consensus 102 ~~s~~~fE~~md~LEkE~~~~~~~~~~~~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~--~vHq~CyGi~~ipeg~W~C 179 (830)
.+|...++.+-+.|++. . .......-.+-.-..|.-|+. .+.|..|+. .+|+. .+.-.|
T Consensus 353 ~ls~~l~~~i~~~L~~g-q--vll~lnRrGyap~l~C~~Cg~--------~~~C~~C~~~L~~h~~--------~~~l~C 413 (665)
T PRK14873 353 RLPSLAFRAARDALEHG-P--VLVQVPRRGYVPSLACARCRT--------PARCRHCTGPLGLPSA--------GGTPRC 413 (665)
T ss_pred ccCHHHHHHHHHHHhcC-c--EEEEecCCCCCCeeEhhhCcC--------eeECCCCCCceeEecC--------CCeeEC
Confidence 48999999999998865 1 111111233445678988875 578999984 45642 345679
Q ss_pred eccCCCCCCCcccccCCCC
Q psy2279 180 RRCLHTPSRAVDCVLCPNN 198 (830)
Q Consensus 180 ~~C~~~~~~~~~C~lC~~~ 198 (830)
..|-+.. .+..|.-|+..
T Consensus 414 h~CG~~~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 414 RWCGRAA-PDWRCPRCGSD 431 (665)
T ss_pred CCCcCCC-cCccCCCCcCC
Confidence 9998764 46677777644
No 169
>KOG1844|consensus
Probab=32.33 E-value=28 Score=41.17 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=36.7
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccccccCC-CceeeeccCCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPE-GQWLCRRCLHT 185 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipe-g~W~C~~C~~~ 185 (830)
..=++|...+.. .+.++.|+.|+.--|..|+|+...-. ....|..|...
T Consensus 86 ~~~c~c~~~~~~-~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~ 135 (508)
T KOG1844|consen 86 ISRCDCGLEDDM-EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPR 135 (508)
T ss_pred ccccccccccCC-CceeeCCcccCcccCceeeeecCCCCchhceeeeeccc
Confidence 333467766432 68999999999999999999876543 56788888743
No 170
>KOG0782|consensus
Probab=32.11 E-value=12 Score=43.71 Aligned_cols=85 Identities=27% Similarity=0.461 Sum_probs=49.9
Q ss_pred CCceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCCCCcccccCC----CcccccccccCCceee
Q psy2279 149 SNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRG----AWAHVVCALWIPEVRF 224 (830)
Q Consensus 149 ~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~----~W~Hv~Calw~pev~f 224 (830)
+..--.|.-|.+.||..|...-.- -...|.--.+.+|.-+.-..| .|||-
T Consensus 196 S~~rRkCAaCkIVvHT~CieqLeK---------------iNfrCKptFRe~gsr~~rE~~fvrHHWVHr----------- 249 (1004)
T KOG0782|consen 196 SGERRKCAACKIVVHTNCIEQLEK---------------INFRCKPTFREYGSRKTRESGFVRHHWVHR----------- 249 (1004)
T ss_pred hhhhccceeeeEEEechHHHHHHH---------------hccccccchhhccccCcccccchHHhHhhH-----------
Confidence 345568999999999999753210 112333333334443332223 68775
Q ss_pred ccCcccCCccccccccccccCcccccccCCC---------CcceeeecCCCCCcccc--hhhhhh
Q psy2279 225 ANTVFLEPIDSIEAIPAARWKLTCYVCKQRG---------VGACIQCHKTNCYAAFH--VTCAQQ 278 (830)
Q Consensus 225 ~n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g---------~GacIqC~~~~C~~~fH--vtCA~~ 278 (830)
.|..-+|.-|++.. .-.-|.|+- |..+|| ++|-..
T Consensus 250 -----------------rRqeGkC~~CgKgFQQKf~FhsKEivAisCSW--CKqayH~KvtCFml 295 (1004)
T KOG0782|consen 250 -----------------RRQEGKCNTCGKGFQQKFFFHSKEIVAISCSW--CKQAYHLKVTCFML 295 (1004)
T ss_pred -----------------hhhccccchhhhhhhhheeeccccEEEEEehH--HHHHhhcchhhhhh
Confidence 34455788887631 124578875 999999 456543
No 171
>KOG3896|consensus
Probab=31.35 E-value=39 Score=37.30 Aligned_cols=46 Identities=26% Similarity=0.692 Sum_probs=30.0
Q ss_pred CCCceEEecCcCcccccccccccccCCCceeeeccCCC---------CCCCcccccCC
Q psy2279 148 NSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT---------PSRAVDCVLCP 196 (830)
Q Consensus 148 ~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~---------~~~~~~C~lC~ 196 (830)
..++|+||.-|..----.|.--. | ..-||.+|... ++....|.-||
T Consensus 20 pl~~L~FCRyC~klrc~~Cv~hE-v--dshfCp~CLEn~ps~EArlKKn~CAnCfDCP 74 (449)
T KOG3896|consen 20 PLPDLVFCRYCFKLRCDDCVLHE-V--DSHFCPRCLENSPSPEARLKKNKCANCFDCP 74 (449)
T ss_pred cccceeeeecccccccccccccc-c--ccccchhhccCCCchHHHhhhccccccccCc
Confidence 46889999988766666663211 1 35799999753 13445677777
No 172
>KOG1084|consensus
Probab=31.35 E-value=16 Score=41.63 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCcccccCCCC----CCCcccccCCCcccccccccCCce----eeccCcccCC---cccccc-ccccccCcccccccCCC
Q psy2279 188 RAVDCVLCPNN----GGAFKLTDRGAWAHVVCALWIPEV----RFANTVFLEP---IDSIEA-IPAARWKLTCYVCKQRG 255 (830)
Q Consensus 188 ~~~~C~lC~~~----gGa~k~t~~~~W~Hv~Calw~pev----~f~n~~~~~p---i~~i~~-i~~~r~~l~C~iC~~~g 255 (830)
....|.+|+.. +-.+..-...-++|..|.++...- .+.....+.- +..++. .......+.|.+|..+
T Consensus 122 ~~~~cg~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~c~~~- 200 (375)
T KOG1084|consen 122 KHLKCGLCRARVRKLGSQLYDEYPSFEARMGCILIQNSRNGPAPEARLLCFSKSFLIESHEKVEDKCSEALNCKLCHEP- 200 (375)
T ss_pred cccccccchhHHhhhcccccchhhhhhhccchhHHhhccCCCCcccccchhhhhhhHHhhhhhhhhcccccccccccCC-
Confidence 34567777711 111112223468888888876541 1111111111 122223 3344556889999886
Q ss_pred Ccceee----ec-CCCCCcccchhhhhhcCcccccccccCCCCCCceeeeEEEeCCCCCCCCC
Q psy2279 256 VGACIQ----CH-KTNCYAAFHVTCAQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAHTPPDV 313 (830)
Q Consensus 256 ~GacIq----C~-~~~C~~~fHvtCA~~aG~~~~~~~~~~~~~~~~~~v~~~~~C~~H~~~~~ 313 (830)
|+-+. |. ...|...+|..||+.-+....- ..+...+..||..|++...
T Consensus 201 -~a~ts~~~~~~~~~~c~~~~e~~~~l~~~~~~~d---------~~~~~~~h~~c~~~~~~~~ 253 (375)
T KOG1084|consen 201 -GAPTSQFDPCDIDDDCNRSREFFCALSPKATIPD---------IGFELWYHRYCALWAPNVH 253 (375)
T ss_pred -CCcccccCCcchhhhhhhhhhhhhhhcCCCcCCc---------cchhHHHHHHHHhcCCcce
Confidence 55444 55 4579999999999876655331 1122345689999998664
No 173
>KOG2041|consensus
Probab=30.96 E-value=83 Score=38.28 Aligned_cols=63 Identities=25% Similarity=0.534 Sum_probs=40.9
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccc-c-CCCceeeeccCCCCC-----CCcccccCCCCCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY-I-PEGQWLCRRCLHTPS-----RAVDCVLCPNNGG 200 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~-i-peg~W~C~~C~~~~~-----~~~~C~lC~~~gG 200 (830)
....|.+|+..-. .--+.|..|+..+ ..|..... | ..--|+|.+|.+... .-..|.||...-|
T Consensus 1116 ~~vdc~~cg~~i~---~~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1116 AKVDCSVCGAKID---PYDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHSMES 1185 (1189)
T ss_pred cceeeeecCCcCC---ccCCCChhhcCcC-ceeeccCCccccceEEEccccccccccccccccccCccccChhh
Confidence 3467999997532 3456899998887 67754322 2 223699999997532 2345788865433
No 174
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=30.23 E-value=35 Score=30.12 Aligned_cols=30 Identities=23% Similarity=0.612 Sum_probs=25.5
Q ss_pred CcccccccCCCcCCCCceEEec--CcCccccccccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCD--MCNLAVHQDCYG 168 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~CyG 168 (830)
...|.+|... .+..+.|. +|...||..|.-
T Consensus 36 ~~~C~~C~~~----~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 36 KLKCSICKKK----GGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCCcCCCCC----CCeEEEEeCCCCCcEEChHHHc
Confidence 4689999975 47999997 699999999964
No 175
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=29.84 E-value=28 Score=31.48 Aligned_cols=33 Identities=30% Similarity=0.761 Sum_probs=25.1
Q ss_pred EecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCC
Q psy2279 154 FCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNN 198 (830)
Q Consensus 154 ~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~ 198 (830)
.|..|...|||. |.-+|..|.+.. -.|.+|+..
T Consensus 46 ~C~~CK~~v~q~---------g~~YCq~CAYkk---GiCamCGKk 78 (90)
T PF10235_consen 46 KCKICKTKVHQP---------GAKYCQTCAYKK---GICAMCGKK 78 (90)
T ss_pred cccccccccccC---------CCccChhhhccc---CcccccCCe
Confidence 688888889982 345899998753 379999865
No 176
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.24 E-value=42 Score=31.18 Aligned_cols=59 Identities=20% Similarity=0.605 Sum_probs=38.0
Q ss_pred cccccccCCCcCCCCceEEe------cCcCcccccccccc-------c---ccCCCceeeeccCCCCCCCcccccCCCCC
Q psy2279 136 AVCCICNDGECQNSNVILFC------DMCNLAVHQDCYGV-------P---YIPEGQWLCRRCLHTPSRAVDCVLCPNNG 199 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~C------d~C~~~vHq~CyGi-------~---~ipeg~W~C~~C~~~~~~~~~C~lC~~~g 199 (830)
..|..|..... +....| ..|...-=+.|++- . ...++.|.|+.|.. .-.|..|-++.
T Consensus 8 ~~CHqCrqKt~---~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg----iCnCs~Crrk~ 80 (105)
T PF10497_consen 8 KTCHQCRQKTL---DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG----ICNCSFCRRKR 80 (105)
T ss_pred CCchhhcCCCC---CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC----eeCCHhhhccC
Confidence 46888887643 555677 67733333445442 1 13567899999985 35688998876
Q ss_pred CC
Q psy2279 200 GA 201 (830)
Q Consensus 200 Ga 201 (830)
|.
T Consensus 81 g~ 82 (105)
T PF10497_consen 81 GW 82 (105)
T ss_pred CC
Confidence 64
No 177
>KOG4477|consensus
Probab=28.20 E-value=28 Score=35.14 Aligned_cols=34 Identities=29% Similarity=0.689 Sum_probs=26.3
Q ss_pred ccccCCCceeeeccCCCC-CCCcccccCCCCCCCc
Q psy2279 169 VPYIPEGQWLCRRCLHTP-SRAVDCVLCPNNGGAF 202 (830)
Q Consensus 169 i~~ipeg~W~C~~C~~~~-~~~~~C~lC~~~gGa~ 202 (830)
.+...+|.|-|.-|.+.. ...+.|.+|..+.|.-
T Consensus 17 kp~~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTS 51 (228)
T KOG4477|consen 17 KPNDDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTS 51 (228)
T ss_pred CCccccCceeeeeeeecchhhhhheeeeccccccc
Confidence 345567999999999754 3568999999887754
No 178
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=28.17 E-value=35 Score=22.92 Aligned_cols=23 Identities=26% Similarity=0.820 Sum_probs=16.5
Q ss_pred CceeeeccCCCC-CCCcccccCCC
Q psy2279 175 GQWLCRRCLHTP-SRAVDCVLCPN 197 (830)
Q Consensus 175 g~W~C~~C~~~~-~~~~~C~lC~~ 197 (830)
|+|.|..|.+.. .....|..|..
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~ 24 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGA 24 (26)
T ss_pred CcccCCCCCCcChhhhccccccCC
Confidence 689999997542 34567888864
No 179
>PHA02929 N1R/p28-like protein; Provisional
Probab=28.08 E-value=92 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCcccccccCCCcCCC---CceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNS---NVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~---n~iv~Cd~C~~~vHq~CyG 168 (830)
.+..|.||.+.-.+.. ..+..=..|+-.||..|..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~ 210 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID 210 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHH
Confidence 4688999998532211 1233445899999999975
No 180
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.76 E-value=72 Score=39.53 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcccccccCCCcCCCCceEEecCcCcc--cccccccccccCCCceeee
Q psy2279 103 LAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLA--VHQDCYGVPYIPEGQWLCR 180 (830)
Q Consensus 103 ~s~~~fE~~md~LEkE~~~~~~~~~~~~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~--vHq~CyGi~~ipeg~W~C~ 180 (830)
+|...++.|-.+||+.-.. .--...-.+-.-..|..|+. +..|.+|.+. +|+. .+.-.|.
T Consensus 405 lS~~Ll~~i~~~l~~geQ~--llflnRRGys~~l~C~~Cg~--------v~~Cp~Cd~~lt~H~~--------~~~L~CH 466 (730)
T COG1198 405 LSPALLEAIRKTLERGEQV--LLFLNRRGYAPLLLCRDCGY--------IAECPNCDSPLTLHKA--------TGQLRCH 466 (730)
T ss_pred CCHHHHHHHHHHHhcCCeE--EEEEccCCccceeecccCCC--------cccCCCCCcceEEecC--------CCeeEeC
Confidence 8999999999999875211 00011123445678999976 5689999865 4543 4778999
Q ss_pred ccCCCCCCCcccccCCCC
Q psy2279 181 RCLHTPSRAVDCVLCPNN 198 (830)
Q Consensus 181 ~C~~~~~~~~~C~lC~~~ 198 (830)
.|-+....+..|.-|+..
T Consensus 467 ~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 467 YCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 999876677788888755
No 181
>KOG4628|consensus
Probab=27.37 E-value=38 Score=38.01 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=30.1
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
..|+||.+.- .. ++.|.==-|.-.||..|-..=.... .=+|+-|+.
T Consensus 230 ~~CaIClEdY-~~-GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDY-EK-GDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeeccc-cc-CCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 3899999863 33 4444448999999999965322211 225777765
No 182
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=27.02 E-value=25 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=26.6
Q ss_pred ccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccC
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCL 183 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~ 183 (830)
.|.||.+.- +..+.-..|+-.||..|+.... ..+...|..|.
T Consensus 1 ~C~iC~~~~----~~~~~~~~C~H~~c~~C~~~~~-~~~~~~Cp~C~ 42 (45)
T cd00162 1 ECPICLEEF----REPVVLLPCGHVFCRSCIDKWL-KSGKNTCPLCR 42 (45)
T ss_pred CCCcCchhh----hCceEecCCCChhcHHHHHHHH-HhCcCCCCCCC
Confidence 488998763 3455566799999999975322 11344555554
No 183
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.87 E-value=8.8e+02 Score=28.03 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHH
Q psy2279 436 RARLLCELVRKREKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMT 515 (830)
Q Consensus 436 r~R~L~elVrKREKlKre~~k~~eei~e~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~ 515 (830)
+++.|...++.+.....+..+.....+...+.+....|..+++.|.+...-..|..+
T Consensus 52 Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~----------------------- 108 (412)
T PF04108_consen 52 QLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFFRPP----------------------- 108 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccccCC-----------------------
Confidence 333333323333333344444444455566778888999999999988655455432
Q ss_pred HHHhcCCCCCHHHHHHH--HHHhHHHHhhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2279 516 NKVKANQYLSLEDFEND--FNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTL 572 (830)
Q Consensus 516 ~kl~~~~Y~s~~eF~~D--v~LI~~Na~~YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~ 572 (830)
....+++.+|+++ |..+..|...|-..-..+...-......|...++.+...+
T Consensus 109 ----~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l 163 (412)
T PF04108_consen 109 ----GEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL 163 (412)
T ss_pred ----CCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5667777777654 6667666665544333333333333334444444444444
No 184
>KOG0644|consensus
Probab=25.72 E-value=24 Score=43.31 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred ccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCC--------------C----------CHHH------HHHHHHHhHH
Q psy2279 489 FLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQY--------------L----------SLED------FENDFNLMVE 538 (830)
Q Consensus 489 F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y--------------~----------s~~e------F~~Dv~LI~~ 538 (830)
|.-+++....|.|..+..-|-+|+|+++.|.+..| . ++.+ ...-+.+|-+
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 44567888889999999999999999999998877 2 3344 6677889999
Q ss_pred HHhhhCCCCcHHHHHHHHHHH
Q psy2279 539 NCLTYNEKDTIFYKAGIKMKQ 559 (830)
Q Consensus 539 Na~~YN~~~s~i~~~A~~L~~ 559 (830)
||..++.|+| +++.+..+++
T Consensus 166 at~~~akPgt-mvqkmk~ikr 185 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKR 185 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHH
Confidence 9999999999 5555554443
No 185
>KOG1493|consensus
Probab=25.24 E-value=25 Score=30.61 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=27.1
Q ss_pred ccccccCCCCcceeeecCC---------CCCcccchhhhhhc
Q psy2279 247 TCYVCKQRGVGACIQCHKT---------NCYAAFHVTCAQQA 279 (830)
Q Consensus 247 ~C~iC~~~g~GacIqC~~~---------~C~~~fHvtCA~~a 279 (830)
.|.||.-...|.|-+|..+ -|..+||..|..+-
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~w 63 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKW 63 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 7999988877899888754 37889999999763
No 186
>KOG4718|consensus
Probab=24.89 E-value=46 Score=34.60 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=55.6
Q ss_pred ccCCChhh--HHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHhhhhhhccCC----CC----------CCC-CCCcccc
Q psy2279 77 EYDMDEED--ASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQ----SQ----------DII-DDEAVCC 139 (830)
Q Consensus 77 eYDmDe~D--~~wL~~~N~~r~~~~~~~~s~~~fE~~md~LEkE~~~~~~~~~----~~----------~~~-~~d~~C~ 139 (830)
|-=|++|| .+|...+|..--.....++....+|.++-+|+...||-...-. +. ..+ |.--.|.
T Consensus 106 E~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf~q~gwf~e~eg~ftl~~ralaELe~YL~s~y~dnlk~Cn 185 (235)
T KOG4718|consen 106 EKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKFIQMGWFMEVEGRFTLGPRALAELEFYLSSNYADNLKNCN 185 (235)
T ss_pred HHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhchhheecceEEEchHHHHHHHHHHHhhhHHHHHHHh
Confidence 33455544 4677666654333344568899999999999876555432210 00 112 2234799
Q ss_pred cccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 140 ICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 140 VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.|..-- =+-+.|..||+.+|..|...
T Consensus 186 ~Ch~Lv----Iqg~rCg~c~i~~h~~c~qt 211 (235)
T KOG4718|consen 186 LCHCLV----IQGIRCGSCNIQYHRGCIQT 211 (235)
T ss_pred HhHHHh----heeeccCcccchhhhHHHHH
Confidence 997531 23468999999999999654
No 187
>PF12773 DZR: Double zinc ribbon
Probab=24.62 E-value=54 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=21.9
Q ss_pred cccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCC
Q psy2279 138 CCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 138 C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
|.-|+.. ......||..|+..+- ..+...++|..|...
T Consensus 1 Cp~Cg~~---~~~~~~fC~~CG~~l~-------~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 1 CPHCGTP---NPDDAKFCPHCGTPLP-------PPDQSKKICPNCGAE 38 (50)
T ss_pred CCCcCCc---CCccccCChhhcCChh-------hccCCCCCCcCCcCC
Confidence 3345443 3345677777777764 123345778888654
No 188
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.40 E-value=47 Score=40.63 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=17.6
Q ss_pred ccccccCCCcCCCCceEEecCcCccc
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAV 162 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~v 162 (830)
.|--|+.. +.+.-.||..|+..+
T Consensus 3 ~Cp~Cg~~---n~~~akFC~~CG~~l 25 (645)
T PRK14559 3 ICPQCQFE---NPNNNRFCQKCGTSL 25 (645)
T ss_pred cCCCCCCc---CCCCCccccccCCCC
Confidence 58888765 556677999998876
No 189
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=23.88 E-value=58 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=18.9
Q ss_pred CcccccccCCCcC-CCCceEEecCcCccc
Q psy2279 135 EAVCCICNDGECQ-NSNVILFCDMCNLAV 162 (830)
Q Consensus 135 d~~C~VC~~~e~~-~~n~iv~Cd~C~~~v 162 (830)
+..|..|+..-.- ..+.+.+|..|+..+
T Consensus 3 ~~~C~~C~~~~i~~~~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKEDDYEVCIFCGSSF 31 (33)
T ss_pred ceEcCCCCCCeEEEecCCeEEcccCCcEe
Confidence 4578888876544 456677888887643
No 190
>KOG0696|consensus
Probab=23.69 E-value=19 Score=41.09 Aligned_cols=37 Identities=22% Similarity=0.493 Sum_probs=30.9
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.....|+-|.+.-..=+.+=..|.-|...||+.|...
T Consensus 54 KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChef 90 (683)
T KOG0696|consen 54 KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEF 90 (683)
T ss_pred cCCchhhhhhhheeccccCceeeeEEeehhhhhhcce
Confidence 4568999999876656678899999999999999853
No 191
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=23.26 E-value=38 Score=33.71 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.+..|-||.+++.... .-=.|.|=...||++|..-
T Consensus 7 ~~~~CRIC~~~~~~~~-~PC~CkGs~k~VH~sCL~r 41 (162)
T PHA02825 7 MDKCCWICKDEYDVVT-NYCNCKNENKIVHKECLEE 41 (162)
T ss_pred CCCeeEecCCCCCCcc-CCcccCCCchHHHHHHHHH
Confidence 4678999998754222 1223345556899999853
No 192
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=22.84 E-value=89 Score=26.01 Aligned_cols=50 Identities=22% Similarity=0.582 Sum_probs=28.4
Q ss_pred cccccccCCCcCCC-CceEEecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCC
Q psy2279 136 AVCCICNDGECQNS-NVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNG 199 (830)
Q Consensus 136 ~~C~VC~~~e~~~~-n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~g 199 (830)
..|.-|+..-.... .....|.+|+..+ -|-|.+|+.- +..+.|--|+..|
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CPnCG~~~-------------I~RC~~CRk~-~~~Y~CP~CGF~G 58 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCPNCGEVI-------------IYRCEKCRKQ-SNPYTCPKCGFEG 58 (59)
T ss_pred ccccCCCCcccCCCccCEeeCCCCCCee-------------EeechhHHhc-CCceECCCCCCcC
Confidence 35666665432222 4555666665431 2778888743 4567777777554
No 193
>KOG1829|consensus
Probab=22.52 E-value=27 Score=41.79 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=22.0
Q ss_pred CceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 150 NVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 150 n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
..-..|+.|+..||..|.....- + |++|..
T Consensus 529 ~~~~rC~~C~avfH~~C~~r~s~--~---CPrC~R 558 (580)
T KOG1829|consen 529 RNTRRCSTCLAVFHKKCLRRKSP--C---CPRCER 558 (580)
T ss_pred ccceeHHHHHHHHHHHHHhccCC--C---CCchHH
Confidence 33457889999999999865432 1 888874
No 194
>KOG1280|consensus
Probab=22.27 E-value=76 Score=35.39 Aligned_cols=80 Identities=29% Similarity=0.457 Sum_probs=45.3
Q ss_pred CceEEecCcCcc-cccccccccccCCCceeeeccCCCCCCCcccccCCCCCCCcccccCCCcccccccccCC---ceeec
Q psy2279 150 NVILFCDMCNLA-VHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTDRGAWAHVVCALWIP---EVRFA 225 (830)
Q Consensus 150 n~iv~Cd~C~~~-vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~t~~~~W~Hv~Calw~p---ev~f~ 225 (830)
.+-|.||+|+.. +--.|| .|-.|..- -.|.-|--.| + .|.-...-|.+|.+.++ +++|+
T Consensus 6 He~v~CdgC~k~~~t~rrY----------kCL~C~Dy----DlC~sCyen~-~--tt~~H~~dHPmqcil~~~dfeL~f~ 68 (381)
T KOG1280|consen 6 HEGVSCDGCGKTAFTFRRY----------KCLRCSDY----DLCFSCYENG-A--TTPIHDEDHPMQCILSRVDFELYFG 68 (381)
T ss_pred cCCceeccccccceeeeee----------Eeeeecch----hHHHHHhhcC-C--CCcccCCCCceeEEeeccceeeEec
Confidence 345788888653 334444 46666532 2477776554 2 22334677888777665 45554
Q ss_pred cCcccCCccccccccccccCcccccccCCC
Q psy2279 226 NTVFLEPIDSIEAIPAARWKLTCYVCKQRG 255 (830)
Q Consensus 226 n~~~~~pi~~i~~i~~~r~~l~C~iC~~~g 255 (830)
. ++|. ..+.. ...|-+|+.+|
T Consensus 69 G----e~i~---~y~~q--SftCPyC~~~G 89 (381)
T KOG1280|consen 69 G----EPIS---HYDPQ--SFTCPYCGIMG 89 (381)
T ss_pred C----cccc---ccccc--cccCCcccccc
Confidence 3 3332 22223 56899998863
No 195
>KOG3038|consensus
Probab=22.19 E-value=61 Score=34.68 Aligned_cols=41 Identities=34% Similarity=0.607 Sum_probs=30.7
Q ss_pred CCCCCccchhhhhccCCC----CCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCC
Q psy2279 713 SHTFEQLQLVWAKCRGYP----WYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKR 780 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~g~p----~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~ 780 (830)
...|+|+.+|+|- || .|+|+|+-| |. ...--|-|+|||+.-
T Consensus 196 ~~~fpp~~~VLA~---YP~TTcFY~aiVh~t----------------p~--------d~s~~y~vlffD~~e 240 (264)
T KOG3038|consen 196 TALFPPGTIVLAV---YPGTTCFYKAIVHST----------------PR--------DGSCDYYVLFFDDEE 240 (264)
T ss_pred ccCCCCCCEEEEE---cCCcceeeeeEeecC----------------CC--------CCCCcceeeeecCcc
Confidence 4789999999986 66 699999986 21 223348899998753
No 196
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=22.07 E-value=12 Score=31.47 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=20.7
Q ss_pred CCceEEecCcCcccccccccccc
Q psy2279 149 SNVILFCDMCNLAVHQDCYGVPY 171 (830)
Q Consensus 149 ~n~iv~Cd~C~~~vHq~CyGi~~ 171 (830)
.+.||.|.+|+..-|-.|.|...
T Consensus 40 LkAMi~Cq~CGAFCHDDCIgpsk 62 (69)
T PF13922_consen 40 LKAMIMCQGCGAFCHDDCIGPSK 62 (69)
T ss_pred hHHHHHHhhccchhccccccHHH
Confidence 37999999999999999999764
No 197
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=21.88 E-value=43 Score=28.83 Aligned_cols=32 Identities=28% Similarity=0.783 Sum_probs=22.5
Q ss_pred ccccccCCCCcceeeecC---------CCCCcccchhhhhh
Q psy2279 247 TCYVCKQRGVGACIQCHK---------TNCYAAFHVTCAQQ 278 (830)
Q Consensus 247 ~C~iC~~~g~GacIqC~~---------~~C~~~fHvtCA~~ 278 (830)
.|.||...-.+.|+.|.. ..|...||..|..+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~ 61 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQ 61 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHH
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHH
Confidence 599998874455554432 35999999999854
No 198
>KOG1044|consensus
Probab=21.56 E-value=37 Score=40.12 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=29.5
Q ss_pred EecCcCcccccccccccccCCCceeeeccCCCCCCCcccccCCCCC-CCcccccCCCcccccccc
Q psy2279 154 FCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNG-GAFKLTDRGAWAHVVCAL 217 (830)
Q Consensus 154 ~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~~~~~~C~lC~~~g-Ga~k~t~~~~W~Hv~Cal 217 (830)
+|..|...+|-+=++ -+|.=+|.+|-+. ..-+.|.-|-+-- |-..+ ..|...|-.||-
T Consensus 162 kc~~c~~vL~gey~s----kdg~pyce~dy~~-~fgvkc~~c~~fisgkvLq-ag~kh~HPtCAR 220 (670)
T KOG1044|consen 162 KCKSCSAVLNGEYMS----KDGVPYCEKDYQA-KFGVKCEECEKFISGKVLQ-AGDKHFHPTCAR 220 (670)
T ss_pred ehhhhcccccceeec----cCCCcchhhhhhh-hcCeehHHhhhhhhhhhhh-ccCcccCcchhh
Confidence 344444444433332 2344466666543 2345677776431 22222 244788888884
No 199
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.55 E-value=1.2e+02 Score=37.61 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHhh--hhhhccCCCCCCCCCCcccccccCCCcCCCCceEEecCcCcc--cccccccccccCCCc
Q psy2279 101 PPLAIDTFELLMDRLEKEC--QFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLA--VHQDCYGVPYIPEGQ 176 (830)
Q Consensus 101 ~~~s~~~fE~~md~LEkE~--~~~~~~~~~~~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~--vHq~CyGi~~ipeg~ 176 (830)
..+|...++.+-+.|++.- +..... ..+.....|.-|+. .+.|..|++. +|+. .+.
T Consensus 349 ~~ls~~l~~~i~~~l~~g~qvll~~nr----rGy~~~~~C~~Cg~--------~~~C~~C~~~l~~h~~--------~~~ 408 (679)
T PRK05580 349 SFLSPPLLEAIKQRLERGEQVLLFLNR----RGYAPFLLCRDCGW--------VAECPHCDASLTLHRF--------QRR 408 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEEcC----CCCCCceEhhhCcC--------ccCCCCCCCceeEECC--------CCe
Confidence 3588888888888777541 111111 22334577888875 4688888865 4542 456
Q ss_pred eeeeccCCCCCCCcccccCCCC
Q psy2279 177 WLCRRCLHTPSRAVDCVLCPNN 198 (830)
Q Consensus 177 W~C~~C~~~~~~~~~C~lC~~~ 198 (830)
-.|..|......+..|.-|+..
T Consensus 409 l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 409 LRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred EECCCCcCCCCCCCCCCCCcCC
Confidence 7899998876556677777543
No 200
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=21.30 E-value=1.2e+02 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.1
Q ss_pred HhHHHHHhcCCCCCHHHHHHHHHHhHH
Q psy2279 512 TTMTNKVKANQYLSLEDFENDFNLMVE 538 (830)
Q Consensus 512 ~tI~~kl~~~~Y~s~~eF~~Dv~LI~~ 538 (830)
..|+.+++.|.|.|..+.+.|...++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458899999999999998888776543
No 201
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=20.07 E-value=65 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.449 Sum_probs=22.2
Q ss_pred CcccccccCCCcC-------CC-CceEEecCcCccccccccc
Q psy2279 135 EAVCCICNDGECQ-------NS-NVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 135 d~~C~VC~~~e~~-------~~-n~iv~Cd~C~~~vHq~CyG 168 (830)
++.|.||+..-.+ +. ...+.=..|+-.||..|..
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~ 60 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS 60 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH
Confidence 3449999875411 11 2344456899999999984
No 202
>KOG4215|consensus
Probab=20.07 E-value=54 Score=36.81 Aligned_cols=58 Identities=22% Similarity=0.544 Sum_probs=35.6
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeee---ccCCCCCCCcccccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCR---RCLHTPSRAVDCVLCP 196 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~---~C~~~~~~~~~C~lC~ 196 (830)
...+|.||+|.-...-=.-+-||||.-.|-.+-. -.-++.|+ .|...+...-.|-.|.
T Consensus 18 ~~~~CaICGDkaTGKHYGA~SCdGCKGFFRRSVr-----k~~~YtCRF~k~C~VDKdkRNaCRyCR 78 (432)
T KOG4215|consen 18 VAEFCAICGDKATGKHYGAISCDGCKGFFRRSVR-----KNHQYTCRFNKQCVVDKDKRNACRYCR 78 (432)
T ss_pred ccchhheeCCcccccccceeecCcchHHHHHHHH-----hcceeeeeccccccccchhhhhhhHhh
Confidence 4679999999754444457899999877644321 12334554 4555544444566665
Done!