Query psy2279
Match_columns 830
No_of_seqs 579 out of 2651
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:38:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l42_A Peregrin; transcription 100.0 4.1E-43 1.4E-47 326.8 7.0 116 713-828 3-123 (130)
2 3pfs_A Bromodomain and PHD fin 100.0 7.6E-40 2.6E-44 314.6 5.5 115 714-828 35-154 (158)
3 3rcw_A Bromodomain-containing 99.9 8E-26 2.7E-30 216.8 13.3 133 457-589 2-135 (135)
4 3o36_A Transcription intermedi 99.9 5.5E-25 1.9E-29 222.0 16.2 96 472-568 85-182 (184)
5 2d9e_A Peregrin; four-helix bu 99.9 5.6E-25 1.9E-29 206.8 14.2 115 466-580 5-120 (121)
6 3u5n_A E3 ubiquitin-protein li 99.9 1.3E-23 4.4E-28 215.9 15.8 98 472-570 85-202 (207)
7 2i7k_A Bromodomain-containing 99.9 7.2E-24 2.5E-28 197.9 11.2 107 463-569 3-109 (117)
8 3hme_A Bromodomain-containing 99.9 3.5E-23 1.2E-27 195.2 11.8 108 464-571 9-116 (123)
9 3d7c_A General control of amin 99.9 4E-23 1.4E-27 191.7 11.9 101 468-568 7-107 (112)
10 2ro1_A Transcription intermedi 99.9 3.6E-23 1.2E-27 209.1 12.5 96 472-572 80-180 (189)
11 3g0l_A Hwalp4, bromodomain adj 99.9 7.2E-23 2.5E-27 191.5 12.3 103 468-570 13-115 (117)
12 1e6i_A Transcriptional activat 99.9 8.4E-23 2.9E-27 192.0 11.4 104 466-569 11-114 (121)
13 3q2e_A Bromodomain and WD repe 99.9 1.5E-22 5.2E-27 190.9 13.1 109 467-575 9-118 (123)
14 3mb3_A PH-interacting protein; 99.9 1.9E-22 6.5E-27 193.3 13.6 113 465-577 18-131 (135)
15 3nxb_A CAT eye syndrome critic 99.9 1.1E-22 3.9E-27 189.9 11.2 104 464-567 12-115 (116)
16 3mqm_A Probable histone-lysine 99.9 1.7E-22 5.9E-27 191.3 12.0 109 468-576 9-123 (126)
17 3mb4_A Protein polybromo-1; PB 99.9 1.8E-22 6E-27 190.7 10.9 105 465-569 12-122 (124)
18 2oss_A HUNK1 protein, bromodom 99.9 1.9E-22 6.6E-27 191.1 10.3 101 468-568 21-123 (127)
19 3p1f_A CREB-binding protein; s 99.9 3.9E-22 1.3E-26 187.1 12.0 104 469-572 12-118 (119)
20 2dat_A Possible global transcr 99.9 2.6E-22 9E-27 189.2 10.6 101 468-568 13-119 (123)
21 3ljw_A Protein polybromo-1; al 99.9 4.1E-22 1.4E-26 187.2 11.8 103 469-571 9-117 (120)
22 2grc_A Probable global transcr 99.9 5.8E-22 2E-26 188.4 11.8 104 469-572 12-122 (129)
23 3k2j_A Protein polybromo-1; PB 99.9 7.7E-22 2.6E-26 187.6 12.0 103 469-571 18-126 (130)
24 3fkm_X Signaling protein; brom 99.9 7.9E-22 2.7E-26 195.2 12.4 103 467-569 20-124 (166)
25 4alg_A Bromodomain-containing 99.9 4.6E-22 1.6E-26 194.5 10.4 103 467-569 31-135 (154)
26 3jvl_A Bromodomain-containing 99.9 2.1E-22 7E-27 189.2 7.1 106 465-570 6-116 (120)
27 3uv4_A Second bromodomain of h 99.9 9.3E-22 3.2E-26 193.0 11.7 109 467-575 28-137 (158)
28 2ouo_A HUNK1 protein, bromodom 99.9 5.3E-22 1.8E-26 188.9 9.1 99 471-569 25-128 (130)
29 3iu5_A Protein polybromo-1; PB 99.9 1.1E-21 3.7E-26 183.2 10.7 101 470-570 7-113 (116)
30 2yyn_A Transcription intermedi 99.9 1.9E-21 6.3E-26 186.3 12.4 101 470-571 22-124 (135)
31 3dai_A ATPase family AAA domai 99.9 2.8E-21 9.6E-26 183.9 12.4 102 465-566 7-112 (130)
32 2ri7_A Nucleosome-remodeling f 99.8 5.1E-21 1.7E-25 191.3 8.9 97 472-568 76-172 (174)
33 3tlp_A Protein polybromo-1; PB 99.8 1.6E-20 5.4E-25 183.2 11.3 90 483-572 46-135 (150)
34 2dkw_A Hypothetical protein KI 99.8 6.9E-20 2.4E-24 174.2 10.7 96 466-566 10-109 (131)
35 3uv5_A Transcription initiatio 99.8 1.5E-19 5.1E-24 192.3 12.3 107 468-574 14-120 (265)
36 3uv5_A Transcription initiatio 99.8 5.2E-19 1.8E-23 188.2 15.6 106 469-574 137-243 (265)
37 3aad_A Transcription initiatio 99.8 3.5E-19 1.2E-23 191.9 13.2 106 470-575 171-277 (292)
38 1h3z_A Hypothetical 62.8 kDa p 99.8 2E-20 6.8E-25 172.6 2.7 98 713-828 4-101 (109)
39 2l89_A PWWP domain-containing 99.8 6.9E-21 2.4E-25 175.0 -1.4 95 714-828 4-98 (108)
40 3aad_A Transcription initiatio 99.7 7.5E-19 2.6E-23 189.3 7.9 104 469-572 48-151 (292)
41 2lq6_A Bromodomain-containing 99.7 1E-18 3.4E-23 154.0 5.4 77 237-313 9-86 (87)
42 2gfu_A DNA mismatch repair pro 99.7 6.6E-19 2.3E-23 168.3 4.2 91 714-820 21-113 (134)
43 2r0y_A Chromatin structure-rem 99.7 8.3E-18 2.8E-22 182.3 9.9 94 482-575 177-271 (311)
44 2r10_A Chromatin structure-rem 99.7 1.6E-17 5.6E-22 183.9 10.6 94 482-575 227-321 (361)
45 2daq_A WHSC1L1 protein, isofor 99.7 2.2E-17 7.5E-22 152.5 6.5 91 714-825 7-97 (110)
46 2r10_A Chromatin structure-rem 99.7 5.6E-17 1.9E-21 179.6 9.1 104 463-568 73-179 (361)
47 2r0y_A Chromatin structure-rem 99.6 1.4E-16 4.8E-21 172.7 8.5 100 468-569 28-130 (311)
48 3iu6_A Protein polybromo-1; PB 99.6 3.6E-15 1.2E-19 142.4 13.4 101 469-573 8-114 (147)
49 1khc_A DNA cytosine-5 methyltr 99.5 1.7E-15 5.7E-20 146.3 4.1 91 714-825 10-100 (147)
50 1ri0_A Hepatoma-derived growth 99.5 1.2E-15 4.2E-20 140.4 2.2 83 714-824 18-100 (110)
51 3llr_A DNA (cytosine-5)-methyl 99.5 4.3E-15 1.5E-19 143.8 4.7 94 710-825 11-105 (154)
52 4fu6_A PC4 and SFRS1-interacti 99.4 3.9E-14 1.3E-18 138.3 3.0 60 714-794 21-80 (153)
53 3qby_A Hepatoma-derived growth 99.4 1E-13 3.5E-18 124.1 3.9 60 714-794 4-63 (94)
54 3lqh_A Histone-lysine N-methyl 99.3 1E-12 3.5E-17 131.2 8.2 92 472-574 79-170 (183)
55 2ku3_A Bromodomain-containing 99.3 2.5E-13 8.4E-18 114.9 0.6 56 130-185 11-66 (71)
56 2l43_A N-teminal domain from h 99.2 2.1E-12 7.1E-17 114.0 1.9 56 130-185 20-75 (88)
57 2yt5_A Metal-response element- 99.1 4.2E-11 1.5E-15 100.0 2.9 53 133-185 4-61 (66)
58 1wev_A Riken cDNA 1110020M19; 99.1 3.6E-11 1.2E-15 106.1 2.1 53 132-184 13-71 (88)
59 4gne_A Histone-lysine N-methyl 98.8 4.1E-09 1.4E-13 95.9 6.4 75 131-210 11-96 (107)
60 1f62_A Transcription factor WS 98.7 4.2E-09 1.4E-13 83.3 2.9 48 136-185 1-50 (51)
61 1mm2_A MI2-beta; PHD, zinc fin 98.7 5.4E-09 1.9E-13 85.8 3.5 48 133-185 7-56 (61)
62 2lri_C Autoimmune regulator; Z 98.7 9.1E-09 3.1E-13 85.6 3.9 48 133-185 10-59 (66)
63 1xwh_A Autoimmune regulator; P 98.7 8E-09 2.7E-13 86.1 3.1 48 133-185 6-55 (66)
64 2l5u_A Chromodomain-helicase-D 98.6 9.5E-09 3.2E-13 84.3 3.0 49 131-184 7-57 (61)
65 2ysm_A Myeloid/lymphoid or mix 98.6 2.9E-08 9.8E-13 91.5 6.4 49 133-183 5-55 (111)
66 2yql_A PHD finger protein 21A; 98.6 1.4E-08 4.8E-13 81.8 3.2 47 132-183 6-54 (56)
67 2puy_A PHD finger protein 21A; 98.6 1.3E-08 4.3E-13 83.3 2.8 46 134-184 4-51 (60)
68 1fp0_A KAP-1 corepressor; PHD 98.6 1.9E-08 6.5E-13 88.0 3.9 49 132-185 22-72 (88)
69 3v43_A Histone acetyltransfera 98.6 2.5E-08 8.5E-13 92.0 4.8 51 133-183 3-62 (112)
70 2e6r_A Jumonji/ARID domain-con 98.5 2.3E-08 7.7E-13 88.9 2.3 52 131-184 12-65 (92)
71 2e6s_A E3 ubiquitin-protein li 98.4 1.8E-07 6.2E-12 80.2 4.1 48 135-184 26-76 (77)
72 2kwj_A Zinc finger protein DPF 98.3 1.6E-07 5.5E-12 86.9 3.1 75 136-217 2-89 (114)
73 3asl_A E3 ubiquitin-protein li 98.3 2.4E-07 8.1E-12 78.1 3.0 46 137-184 20-68 (70)
74 3shb_A E3 ubiquitin-protein li 98.2 4.4E-07 1.5E-11 77.7 2.8 46 137-184 28-76 (77)
75 1wen_A Inhibitor of growth fam 98.2 7.8E-07 2.7E-11 75.1 4.2 50 133-186 14-66 (71)
76 2vnf_A ING 4, P29ING4, inhibit 98.2 2.7E-07 9.3E-12 75.3 1.2 47 134-184 9-58 (60)
77 2jmi_A Protein YNG1, ING1 homo 98.2 5.7E-07 2E-11 79.2 2.6 48 132-183 23-74 (90)
78 3c6w_A P28ING5, inhibitor of g 98.1 4.9E-07 1.7E-11 73.5 1.3 48 133-184 7-57 (59)
79 2g6q_A Inhibitor of growth pro 98.1 6.7E-07 2.3E-11 73.4 1.4 49 133-185 9-60 (62)
80 2k16_A Transcription initiatio 98.1 9.7E-07 3.3E-11 75.3 2.0 50 133-184 16-67 (75)
81 2kwj_A Zinc finger protein DPF 98.1 1.2E-06 4E-11 81.0 2.6 47 136-184 59-107 (114)
82 1weu_A Inhibitor of growth fam 98.0 2.1E-06 7.1E-11 75.8 3.4 48 134-185 35-85 (91)
83 3v43_A Histone acetyltransfera 98.0 2.7E-06 9.3E-11 78.3 3.5 48 136-184 62-111 (112)
84 3ask_A E3 ubiquitin-protein li 98.0 2.6E-06 8.9E-11 87.1 3.4 48 135-184 174-224 (226)
85 2ysm_A Myeloid/lymphoid or mix 97.9 4.3E-06 1.5E-10 76.8 3.4 46 137-184 56-103 (111)
86 2lv9_A Histone-lysine N-methyl 97.8 1.1E-05 3.6E-10 72.5 4.3 49 133-184 25-75 (98)
87 1x4i_A Inhibitor of growth pro 97.8 6.5E-06 2.2E-10 69.2 1.8 48 133-184 4-54 (70)
88 2lbm_A Transcriptional regulat 97.4 4.8E-05 1.7E-09 72.5 2.6 47 134-185 62-117 (142)
89 1we9_A PHD finger family prote 97.2 0.00015 5.3E-09 59.6 3.3 52 133-185 4-58 (64)
90 3o70_A PHD finger protein 13; 97.2 0.00014 4.9E-09 60.6 3.0 50 133-185 17-67 (68)
91 2vpb_A Hpygo1, pygopus homolog 97.1 0.00012 4.2E-09 60.5 1.0 50 133-183 6-64 (65)
92 2rsd_A E3 SUMO-protein ligase 97.0 0.00023 8E-09 59.3 2.3 48 134-184 9-64 (68)
93 1wew_A DNA-binding family prot 97.0 0.00025 8.5E-09 60.8 2.4 49 134-185 15-72 (78)
94 3ql9_A Transcriptional regulat 97.0 0.00016 5.6E-09 67.6 1.3 47 134-185 56-111 (129)
95 1wee_A PHD finger family prote 96.9 0.0004 1.4E-08 58.6 2.6 49 134-184 15-65 (72)
96 3o7a_A PHD finger protein 13 v 96.7 0.00056 1.9E-08 53.9 2.3 47 136-184 4-51 (52)
97 1wem_A Death associated transc 96.6 0.00053 1.8E-08 58.4 1.6 52 131-184 11-69 (76)
98 2ri7_A Nucleosome-remodeling f 96.6 0.00029 9.9E-09 69.7 -0.2 50 133-184 6-58 (174)
99 2kgg_A Histone demethylase jar 96.6 0.00064 2.2E-08 53.6 1.7 46 137-183 4-52 (52)
100 1wep_A PHF8; structural genomi 96.6 0.0011 3.6E-08 57.0 3.2 53 132-185 8-63 (79)
101 2xb1_A Pygopus homolog 2, B-ce 96.5 0.001 3.4E-08 60.4 2.3 50 135-185 3-61 (105)
102 3kqi_A GRC5, PHD finger protei 96.2 0.0013 4.5E-08 55.8 1.2 51 133-184 7-60 (75)
103 1wil_A KIAA1045 protein; ring 95.2 0.0052 1.8E-07 52.4 1.2 51 131-184 11-75 (89)
104 3lqh_A Histone-lysine N-methyl 94.0 0.016 5.4E-07 57.6 1.6 50 136-185 3-63 (183)
105 3pmi_A PWWP domain-containing 93.6 0.017 5.7E-07 52.9 0.8 25 715-739 4-28 (134)
106 1wew_A DNA-binding family prot 93.6 0.045 1.5E-06 46.7 3.4 34 243-277 14-48 (78)
107 3kv5_D JMJC domain-containing 93.5 0.016 5.3E-07 66.3 0.5 50 134-184 35-87 (488)
108 3kv4_A PHD finger protein 8; e 93.2 0.011 3.8E-07 66.6 -1.3 50 134-184 3-55 (447)
109 3pur_A Lysine-specific demethy 93.1 0.043 1.5E-06 62.5 3.4 36 149-184 55-93 (528)
110 2g6q_A Inhibitor of growth pro 92.5 0.047 1.6E-06 44.5 1.8 32 245-277 11-43 (62)
111 1weu_A Inhibitor of growth fam 91.2 0.11 3.9E-06 45.5 3.0 33 244-277 35-68 (91)
112 3c6w_A P28ING5, inhibitor of g 90.9 0.085 2.9E-06 42.5 1.8 32 245-277 9-41 (59)
113 1wen_A Inhibitor of growth fam 90.8 0.15 5.3E-06 42.6 3.3 33 244-277 15-48 (71)
114 1wep_A PHF8; structural genomi 90.3 0.17 5.7E-06 43.1 3.2 33 242-277 9-43 (79)
115 2rsd_A E3 SUMO-protein ligase 89.8 0.13 4.3E-06 42.6 1.9 31 245-276 10-41 (68)
116 2vnf_A ING 4, P29ING4, inhibit 89.6 0.13 4.4E-06 41.5 1.8 32 245-277 10-42 (60)
117 4gne_A Histone-lysine N-methyl 89.6 0.14 4.9E-06 46.3 2.3 32 244-277 14-45 (107)
118 2jmi_A Protein YNG1, ING1 homo 89.4 0.17 5.8E-06 44.3 2.5 34 243-277 24-58 (90)
119 1we9_A PHD finger family prote 89.4 0.16 5.4E-06 41.3 2.2 31 245-277 6-38 (64)
120 1wem_A Death associated transc 89.2 0.22 7.5E-06 42.0 3.1 31 244-277 15-46 (76)
121 3qii_A PHD finger protein 20; 88.3 0.17 5.6E-06 43.7 1.6 56 714-797 20-75 (85)
122 1wee_A PHD finger family prote 88.3 0.18 6.1E-06 42.1 1.8 34 242-278 13-48 (72)
123 1wil_A KIAA1045 protein; ring 87.9 0.25 8.6E-06 42.2 2.5 38 245-284 15-52 (89)
124 2yrv_A AT-rich interactive dom 87.9 0.74 2.5E-05 41.8 5.6 80 718-828 13-94 (117)
125 4bbq_A Lysine-specific demethy 87.6 0.29 1E-05 44.6 3.0 72 136-221 8-95 (117)
126 2zet_C Melanophilin; complex, 87.3 0.64 2.2E-05 44.7 5.2 50 134-184 67-116 (153)
127 2k16_A Transcription initiatio 87.2 0.28 9.7E-06 41.1 2.5 31 245-277 18-49 (75)
128 3o70_A PHD finger protein 13; 86.7 0.27 9.2E-06 40.7 2.0 30 245-277 19-49 (68)
129 1x4i_A Inhibitor of growth pro 84.3 0.51 1.7E-05 39.3 2.6 31 246-277 7-38 (70)
130 2kgg_A Histone demethylase jar 84.0 0.46 1.6E-05 37.0 2.1 30 247-277 4-35 (52)
131 3p8d_A Medulloblastoma antigen 83.9 0.41 1.4E-05 39.5 1.7 56 714-797 5-60 (67)
132 2puy_A PHD finger protein 21A; 83.2 0.63 2.1E-05 37.3 2.6 30 245-278 5-34 (60)
133 4bbq_A Lysine-specific demethy 83.2 0.45 1.5E-05 43.4 2.0 37 149-185 72-114 (117)
134 2ldm_A Uncharacterized protein 83.7 0.24 8E-06 42.5 0.0 56 715-798 6-61 (81)
135 2xb1_A Pygopus homolog 2, B-ce 82.9 0.57 2E-05 42.1 2.5 31 246-277 4-36 (105)
136 2lv9_A Histone-lysine N-methyl 82.9 0.51 1.8E-05 41.9 2.2 29 246-277 29-58 (98)
137 4hcz_A PHD finger protein 1; p 82.9 0.49 1.7E-05 37.5 1.7 56 714-796 2-57 (58)
138 1f62_A Transcription factor WS 82.8 0.62 2.1E-05 36.0 2.3 30 247-278 2-32 (51)
139 2l5u_A Chromodomain-helicase-D 82.6 0.67 2.3E-05 37.4 2.5 31 244-278 10-40 (61)
140 2lri_C Autoimmune regulator; Z 82.4 0.59 2E-05 38.4 2.2 28 246-277 13-40 (66)
141 1xwh_A Autoimmune regulator; P 82.3 0.64 2.2E-05 38.1 2.4 30 244-277 7-36 (66)
142 3o7a_A PHD finger protein 13 v 82.2 0.66 2.3E-05 36.1 2.3 29 247-277 5-34 (52)
143 3kqi_A GRC5, PHD finger protei 82.2 0.52 1.8E-05 39.6 1.8 30 245-277 10-41 (75)
144 2yql_A PHD finger protein 21A; 81.3 0.66 2.3E-05 36.6 2.0 31 244-278 8-38 (56)
145 1mm2_A MI2-beta; PHD, zinc fin 81.1 0.67 2.3E-05 37.4 2.0 31 244-278 8-38 (61)
146 2vpb_A Hpygo1, pygopus homolog 80.0 0.93 3.2E-05 37.1 2.5 31 246-277 9-41 (65)
147 2xk0_A Polycomb protein PCL; t 78.7 1.5 5.1E-05 35.9 3.3 54 714-796 14-67 (69)
148 1zbd_B Rabphilin-3A; G protein 78.4 1.7 6E-05 40.7 4.2 52 133-184 53-106 (134)
149 1iym_A EL5; ring-H2 finger, ub 77.2 2 6.8E-05 32.9 3.6 36 132-168 2-37 (55)
150 2eqm_A PHD finger protein 20-l 76.9 2.3 7.8E-05 36.9 4.2 57 714-795 18-77 (88)
151 2d8s_A Cellular modulator of i 76.7 0.65 2.2E-05 39.6 0.7 36 132-168 12-50 (80)
152 1weo_A Cellulose synthase, cat 74.0 0.59 2E-05 40.4 -0.3 51 134-185 15-67 (93)
153 3a1b_A DNA (cytosine-5)-methyl 73.4 1.3 4.4E-05 42.7 1.8 46 135-185 79-134 (159)
154 3nw0_A Non-structural maintena 71.5 2.4 8.1E-05 43.7 3.5 65 101-170 131-211 (238)
155 2lrq_A Protein MRG15, NUA4 com 73.2 0.89 3E-05 39.3 0.0 61 713-797 10-71 (85)
156 3e9g_A Chromatin modification- 70.3 1.2 4.2E-05 41.1 0.9 82 714-796 6-103 (130)
157 2yt5_A Metal-response element- 69.9 1.9 6.5E-05 35.0 1.9 32 245-278 6-40 (66)
158 1v5n_A PDI-like hypothetical p 68.9 1.7 6E-05 37.7 1.5 67 101-170 5-79 (89)
159 2ku3_A Bromodomain-containing 68.7 3 0.0001 34.7 2.9 33 244-278 15-50 (71)
160 2yuu_A NPKC-delta, protein kin 68.6 3.3 0.00011 35.3 3.3 38 132-169 25-62 (83)
161 2m0o_A PHD finger protein 1; t 68.5 16 0.00055 30.5 7.1 54 714-794 25-78 (79)
162 1fp0_A KAP-1 corepressor; PHD 68.4 2 7E-05 37.3 1.9 30 245-278 25-54 (88)
163 1wev_A Riken cDNA 1110020M19; 68.2 2.3 7.9E-05 36.8 2.2 32 244-277 15-49 (88)
164 3asl_A E3 ubiquitin-protein li 68.2 2.5 8.5E-05 35.0 2.3 29 247-277 20-49 (70)
165 1ptq_A Protein kinase C delta 67.7 3.3 0.00011 31.4 2.8 35 134-168 10-44 (50)
166 2ecl_A Ring-box protein 2; RNF 67.5 2.7 9.2E-05 35.5 2.4 35 134-168 14-58 (81)
167 2enn_A NPKC-theta, protein kin 67.0 2.5 8.4E-05 35.6 2.1 38 132-169 31-68 (77)
168 2equ_A PHD finger protein 20-l 66.9 3 0.0001 35.0 2.5 55 714-796 8-62 (74)
169 2eko_A Histone acetyltransfera 66.8 5.8 0.0002 34.3 4.4 57 714-793 8-69 (87)
170 2l43_A N-teminal domain from h 66.0 2.8 9.6E-05 36.3 2.3 32 245-278 25-59 (88)
171 1vyx_A ORF K3, K3RING; zinc-bi 65.5 0.82 2.8E-05 36.7 -1.2 50 133-184 4-55 (60)
172 2e6r_A Jumonji/ARID domain-con 65.3 2.2 7.4E-05 37.4 1.4 30 246-277 17-47 (92)
173 3uej_A NPKC-delta, protein kin 64.8 3.1 0.00011 33.7 2.2 36 133-168 18-53 (65)
174 2enz_A NPKC-theta, protein kin 64.6 3.6 0.00012 33.3 2.5 37 132-168 20-56 (65)
175 3o36_A Transcription intermedi 64.5 2.5 8.5E-05 41.6 1.9 28 246-277 5-32 (184)
176 2k3y_A Chromatin modification- 63.6 2.1 7E-05 40.2 1.0 77 714-797 8-106 (136)
177 1wgs_A MYST histone acetyltran 63.6 3.3 0.00011 38.7 2.4 57 714-791 11-68 (133)
178 3pfq_A PKC-B, PKC-beta, protei 63.5 2.6 8.9E-05 49.9 2.1 35 134-168 47-81 (674)
179 2f5k_A MORF-related gene 15 is 63.1 1.6 5.6E-05 38.9 0.2 60 713-796 20-80 (102)
180 1y8f_A UNC-13 homolog A, MUNC1 63.0 4.3 0.00015 33.0 2.8 37 133-169 22-58 (66)
181 2e6s_A E3 ubiquitin-protein li 62.7 3.3 0.00011 35.0 2.0 29 247-277 28-57 (77)
182 2ct0_A Non-SMC element 1 homol 61.1 4.1 0.00014 34.1 2.3 32 133-168 13-44 (74)
183 3u5n_A E3 ubiquitin-protein li 61.0 2.9 0.0001 41.9 1.7 28 246-277 8-35 (207)
184 3kv5_D JMJC domain-containing 60.8 3 0.0001 47.5 1.9 30 245-277 37-68 (488)
185 2pv0_B DNA (cytosine-5)-methyl 60.8 2.6 8.9E-05 46.3 1.3 66 135-218 93-168 (386)
186 4b6d_A RAC GTPase-activating p 60.6 3.8 0.00013 33.0 1.9 34 135-169 19-52 (61)
187 2ro0_A Histone acetyltransfera 59.5 6 0.00021 34.6 3.2 57 711-791 19-76 (92)
188 1faq_A RAF-1; transferase, ser 59.2 4.7 0.00016 30.9 2.2 32 134-169 13-44 (52)
189 4a4f_A SurviVal of motor neuro 58.8 3.7 0.00013 33.2 1.6 54 714-794 7-62 (64)
190 2vrw_B P95VAV, VAV1, proto-onc 58.7 13 0.00045 40.8 6.7 37 132-168 354-390 (406)
191 2eli_A Protein kinase C alpha 58.5 5.3 0.00018 34.2 2.7 36 133-168 26-61 (85)
192 1e4u_A Transcriptional repress 58.0 3.5 0.00012 34.7 1.4 51 132-184 8-58 (78)
193 2csz_A Synaptotagmin-like prot 57.7 4.8 0.00016 33.9 2.1 51 132-184 22-72 (76)
194 4ap4_A E3 ubiquitin ligase RNF 57.6 4.2 0.00014 36.9 2.0 37 133-169 5-43 (133)
195 3k1l_B Fancl; UBC, ring, RWD, 57.6 3.8 0.00013 44.3 1.9 36 133-168 306-344 (381)
196 3ky9_A Proto-oncogene VAV; cal 57.5 6.3 0.00022 45.8 3.9 39 131-169 525-563 (587)
197 2fnf_X Putative RAS effector N 56.8 5.3 0.00018 33.2 2.3 33 133-168 33-65 (72)
198 2ecm_A Ring finger and CHY zin 56.2 4.8 0.00016 30.6 1.8 34 134-168 4-37 (55)
199 2rnz_A Histone acetyltransfera 55.3 6.4 0.00022 34.5 2.6 56 713-792 23-79 (94)
200 1r79_A Diacylglycerol kinase, 54.5 6.4 0.00022 33.8 2.5 35 134-168 37-72 (84)
201 2lcc_A AT-rich interactive dom 54.4 2.6 9E-05 35.5 -0.0 58 714-794 4-65 (76)
202 3s6w_A Tudor domain-containing 54.1 4.8 0.00016 31.3 1.5 51 716-793 2-54 (54)
203 2lbm_A Transcriptional regulat 52.8 5.8 0.0002 37.5 2.1 30 245-278 63-92 (142)
204 2ep4_A Ring finger protein 24; 52.7 5.4 0.00019 32.5 1.7 36 131-168 11-46 (74)
205 2ct0_A Non-SMC element 1 homol 52.4 7.3 0.00025 32.6 2.4 30 246-278 16-45 (74)
206 2ku7_A MLL1 PHD3-CYP33 RRM chi 52.4 2.7 9.3E-05 38.5 -0.3 34 152-185 2-44 (140)
207 2db6_A SH3 and cysteine rich d 51.4 2.5 8.7E-05 35.3 -0.6 36 133-168 26-61 (74)
208 3rsn_A SET1/ASH2 histone methy 51.3 10 0.00035 37.1 3.6 62 149-219 17-81 (177)
209 2ro1_A Transcription intermedi 51.1 5.3 0.00018 39.6 1.6 29 246-278 3-31 (189)
210 3shb_A E3 ubiquitin-protein li 50.7 6.5 0.00022 33.2 1.9 29 247-277 28-57 (77)
211 3kv4_A PHD finger protein 8; e 50.2 5.2 0.00018 45.0 1.5 29 247-277 6-36 (447)
212 2kiz_A E3 ubiquitin-protein li 49.6 6.5 0.00022 31.5 1.7 36 131-168 10-45 (69)
213 1weq_A PHD finger protein 7; s 49.3 13 0.00045 31.9 3.6 35 149-184 43-78 (85)
214 2ysl_A Tripartite motif-contai 48.9 7.4 0.00025 31.5 1.9 49 131-184 16-65 (73)
215 2l0b_A E3 ubiquitin-protein li 47.2 7.1 0.00024 33.5 1.6 35 132-168 37-71 (91)
216 2ect_A Ring finger protein 126 46.7 11 0.00037 31.0 2.7 36 131-168 11-46 (78)
217 3rsn_A SET1/ASH2 histone methy 46.6 17 0.00057 35.6 4.3 50 250-312 9-60 (177)
218 1rfh_A RAS association (ralgds 46.4 5.2 0.00018 31.8 0.5 33 133-168 20-52 (59)
219 2ysj_A Tripartite motif-contai 46.1 6.9 0.00023 30.8 1.3 33 131-168 16-48 (63)
220 3ql9_A Transcriptional regulat 45.2 9.7 0.00033 35.4 2.3 32 244-279 56-87 (129)
221 1v5n_A PDI-like hypothetical p 44.5 12 0.00042 32.3 2.7 32 245-278 47-78 (89)
222 2yur_A Retinoblastoma-binding 43.9 8.8 0.0003 31.4 1.6 51 130-184 10-60 (74)
223 4a0k_B E3 ubiquitin-protein li 43.4 5.4 0.00018 36.4 0.2 35 134-168 47-94 (117)
224 3ask_A E3 ubiquitin-protein li 42.3 8.4 0.00029 39.2 1.5 29 247-277 176-205 (226)
225 3fl2_A E3 ubiquitin-protein li 42.3 14 0.00049 33.3 3.0 30 134-168 51-80 (124)
226 2ct2_A Tripartite motif protei 41.2 12 0.0004 31.3 2.1 38 131-169 11-48 (88)
227 1x4j_A Ring finger protein 38; 40.2 9.5 0.00032 31.2 1.3 35 132-168 20-54 (75)
228 1v87_A Deltex protein 2; ring- 38.5 8.8 0.0003 34.1 0.9 35 134-168 24-71 (114)
229 3l11_A E3 ubiquitin-protein li 37.6 9.7 0.00033 34.0 1.0 32 132-168 12-43 (115)
230 2ecv_A Tripartite motif-contai 36.6 11 0.00036 31.2 1.0 34 131-169 15-48 (85)
231 2row_A RHO-associated protein 36.3 11 0.00038 32.3 1.1 37 132-168 32-70 (84)
232 3dpl_R Ring-box protein 1; ubi 35.5 9.7 0.00033 34.0 0.6 33 246-278 38-84 (106)
233 1mhn_A SurviVal motor neuron p 35.4 17 0.00059 28.6 2.0 54 715-794 3-57 (59)
234 3lrq_A E3 ubiquitin-protein li 34.8 7.8 0.00027 33.9 -0.1 32 133-168 20-51 (100)
235 2egp_A Tripartite motif-contai 34.4 12 0.00041 30.6 1.0 33 131-168 8-40 (79)
236 2lq6_A Bromodomain-containing 33.7 17 0.00059 31.2 1.9 30 135-167 17-48 (87)
237 3nw0_A Non-structural maintena 33.7 18 0.00062 37.0 2.4 32 245-279 180-211 (238)
238 2ecj_A Tripartite motif-contai 33.3 15 0.00051 28.0 1.3 33 131-168 11-43 (58)
239 2d8t_A Dactylidin, ring finger 33.2 24 0.00082 28.4 2.6 32 132-168 12-43 (71)
240 1kbe_A Kinase suppressor of RA 32.8 21 0.0007 27.4 2.0 29 136-168 15-43 (49)
241 2d9t_A Tudor domain-containing 32.8 24 0.00081 29.6 2.6 57 714-796 8-65 (78)
242 2ckl_B Ubiquitin ligase protei 32.6 7.7 0.00026 37.1 -0.6 32 133-168 52-83 (165)
243 2ebr_A Nuclear pore complex pr 31.6 42 0.0014 25.5 3.4 27 172-198 7-34 (47)
244 2ea6_A Ring finger protein 4; 31.5 13 0.00045 29.4 0.7 38 131-168 11-50 (69)
245 3gj5_B Nuclear pore complex pr 31.5 21 0.00071 25.3 1.6 25 173-197 4-29 (34)
246 2ecw_A Tripartite motif-contai 31.4 17 0.00057 30.0 1.4 34 131-169 15-48 (85)
247 2bud_A Males-absent on the fir 30.9 23 0.00078 30.9 2.2 57 718-794 17-74 (92)
248 1t1h_A Gspef-atpub14, armadill 30.6 26 0.0009 28.5 2.5 32 132-168 5-36 (78)
249 3m9p_A MALE-specific lethal 3 30.2 8.5 0.00029 34.7 -0.7 62 714-795 18-86 (110)
250 3dpl_R Ring-box protein 1; ubi 30.1 23 0.00078 31.5 2.1 35 134-168 36-83 (106)
251 2k1p_A Zinc finger RAN-binding 29.8 33 0.0011 23.9 2.5 26 173-198 3-29 (33)
252 2lk0_A RNA-binding protein 5; 29.5 19 0.00066 24.9 1.2 24 174-197 3-27 (32)
253 4a0k_B E3 ubiquitin-protein li 28.9 12 0.0004 34.2 0.0 33 246-278 49-95 (117)
254 2dig_A Lamin-B receptor; tudor 28.3 46 0.0016 27.1 3.3 54 714-794 11-65 (68)
255 3ng2_A RNF4, snurf, ring finge 27.7 14 0.00049 29.4 0.3 37 132-168 7-45 (71)
256 2ecn_A Ring finger protein 141 27.3 21 0.0007 28.5 1.2 45 131-183 11-55 (70)
257 3gj3_B Nuclear pore complex pr 27.2 27 0.00092 24.5 1.6 25 173-197 4-29 (33)
258 3ztg_A E3 ubiquitin-protein li 26.8 15 0.00052 31.1 0.3 34 131-168 9-42 (92)
259 1g25_A CDK-activating kinase a 26.7 14 0.00047 29.2 0.1 49 134-183 2-50 (65)
260 3sd4_A PHD finger protein 20; 26.5 45 0.0015 27.2 3.1 55 714-793 11-68 (69)
261 2ecy_A TNF receptor-associated 25.6 18 0.00061 28.6 0.5 48 131-184 11-58 (66)
262 2xeu_A Ring finger protein 4; 25.6 14 0.00048 28.7 -0.1 35 134-168 2-38 (64)
263 2jzk_A Cyanovirin-N homolog; C 25.6 24 0.00083 31.4 1.4 29 157-185 1-29 (106)
264 2a20_A Regulating synaptic mem 25.5 53 0.0018 26.1 3.1 50 133-183 7-58 (62)
265 1chc_A Equine herpes virus-1 r 25.4 38 0.0013 26.6 2.5 32 133-168 3-34 (68)
266 2e5q_A PHD finger protein 19; 25.3 49 0.0017 26.5 2.9 55 714-795 6-60 (63)
267 3a1b_A DNA (cytosine-5)-methyl 25.0 40 0.0014 32.3 2.9 34 244-279 78-111 (159)
268 2ebq_A Nuclear pore complex pr 23.5 38 0.0013 25.8 2.0 27 172-198 7-34 (47)
269 2l8d_A Lamin-B receptor; DNA b 23.4 29 0.00098 28.1 1.3 53 714-793 8-61 (66)
270 3m9q_A Protein MALE-specific l 23.4 12 0.00042 33.2 -0.9 64 714-795 18-86 (101)
271 3cxl_A N-chimerin; SH2, RHO-GA 22.3 35 0.0012 38.3 2.3 36 133-168 218-253 (463)
272 1bor_A Transcription factor PM 21.3 85 0.0029 23.9 3.7 30 133-167 4-33 (56)
273 2d9g_A YY1-associated factor 2 21.2 59 0.002 25.2 2.7 28 172-199 7-35 (53)
274 2e5p_A Protein PHF1, PHD finge 21.1 50 0.0017 26.9 2.2 55 714-795 8-62 (68)
275 2pv0_B DNA (cytosine-5)-methyl 20.8 51 0.0017 36.1 3.1 35 243-279 91-125 (386)
276 3oa6_A MALE-specific lethal 3 20.8 15 0.00052 33.1 -0.9 63 714-794 18-85 (110)
277 2ku7_A MLL1 PHD3-CYP33 RRM chi 20.6 26 0.0009 31.6 0.7 16 259-276 2-17 (140)
278 2djb_A Polycomb group ring fin 20.4 43 0.0015 26.9 1.9 35 130-168 10-44 (72)
279 2ckl_A Polycomb group ring fin 20.2 29 0.00099 30.4 0.8 33 132-168 12-44 (108)
280 4ayc_A E3 ubiquitin-protein li 20.2 25 0.00086 32.4 0.4 30 134-168 52-81 (138)
281 3vk6_A E3 ubiquitin-protein li 20.1 21 0.00073 31.5 -0.1 41 153-196 2-44 (101)
282 3pfq_A PKC-B, PKC-beta, protei 20.0 48 0.0016 38.9 2.9 37 132-168 110-146 (674)
No 1
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=100.00 E-value=4.1e-43 Score=326.82 Aligned_cols=116 Identities=59% Similarity=1.108 Sum_probs=111.6
Q ss_pred CCCCCccchhhhhccCCCCCceEeeCCCCCC-CcccCCCCCCCCcHHHHhhhcC----CCCCeEEEEEcCCCCCcccccC
Q psy2279 713 SHTFEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANN----YTEPVYLVLFFDTKRTWQWLPR 787 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~-g~~h~~~~~~~pp~~~~~~~~~----~~~~~~~v~ffd~~~~~~w~~~ 787 (830)
...|+|||||||||+|||||||+||||+||+ |++|||||||+||.+||+++++ +++.+|||+|||+++||+||+.
T Consensus 3 ~~~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~aWv~~ 82 (130)
T 3l42_A 3 DSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPR 82 (130)
T ss_dssp CSSSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCEEEEEG
T ss_pred cccCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCceEeecc
Confidence 3679999999999999999999999999999 9999999999999999998753 6789999999999999999999
Q ss_pred CCcccCCCChhhhhhhhcccCChhHHHHHHHHHHHHHhhcC
Q psy2279 788 NKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828 (830)
Q Consensus 788 ~~~~~l~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~~~ 828 (830)
++|+|||+|...|.++|++++|+++||+|+.||++||+|+|
T Consensus 83 ~~i~pl~~d~~~D~~kl~~s~K~~~rKav~~AYe~A~~~~~ 123 (130)
T 3l42_A 83 TKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRS 123 (130)
T ss_dssp GGEEESSSCHHHHHHHHTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cceeecCCchhhHHHhcccCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999997
No 2
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=100.00 E-value=7.6e-40 Score=314.58 Aligned_cols=115 Identities=59% Similarity=1.135 Sum_probs=111.0
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCC-CcccCCCCCCCCcHHHHhhhc----CCCCCeEEEEEcCCCCCcccccCC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALAN----NYTEPVYLVLFFDTKRTWQWLPRN 788 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~-g~~h~~~~~~~pp~~~~~~~~----~~~~~~~~v~ffd~~~~~~w~~~~ 788 (830)
..|+|||||||||+|||||||+||||+||+ |++|||||||+||.+||++++ +.++.+|+|+|||+++||+||+.+
T Consensus 35 ~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~~~ 114 (158)
T 3pfs_A 35 GDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLPRD 114 (158)
T ss_dssp SCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEEGG
T ss_pred CCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCceEeeccc
Confidence 689999999999999999999999999999 999999999999999999865 357899999999999999999999
Q ss_pred CcccCCCChhhhhhhhcccCChhHHHHHHHHHHHHHhhcC
Q psy2279 789 KLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828 (830)
Q Consensus 789 ~~~~l~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~~~ 828 (830)
+|.||++|.+.|+++|+++||+++||||+.||++||+|+|
T Consensus 115 ~L~Pl~~d~~~D~~kl~e~Kks~~rKAl~~AYe~A~~~~~ 154 (158)
T 3pfs_A 115 KVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHLS 154 (158)
T ss_dssp GEEECSSCHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHH
T ss_pred cEeecCCchhhhhhhhccCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987
No 3
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=8e-26 Score=216.83 Aligned_cols=133 Identities=37% Similarity=0.764 Sum_probs=113.5
Q ss_pred HHhhhhhccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHh
Q psy2279 457 VTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLM 536 (830)
Q Consensus 457 ~~eei~e~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI 536 (830)
+.+.+.+..+.|+..+|+.+|+.|.+++.+++|..||+..++||||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 2 ~~q~~~~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (135)
T 3rcw_A 2 MEQVAMELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLI 81 (135)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCCCCCCCCCC
Q psy2279 537 VENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDA-GFDQIGSILPGTSA 589 (830)
Q Consensus 537 ~~Na~~YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~ 589 (830)
|+||+.||+++|.+|++|.+|++.|...+++++++++.. +...++.++|+.|.
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 135 (135)
T 3rcw_A 82 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERPA 135 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999988 66778888887763
No 4
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=5.5e-25 Score=222.05 Aligned_cols=96 Identities=33% Similarity=0.596 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhc--CCCCCHHHHHHHHHHhHHHHhhhCCCCcH
Q psy2279 472 LLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKA--NQYLSLEDFENDFNLMVENCLTYNEKDTI 549 (830)
Q Consensus 472 ~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~--~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~ 549 (830)
.|+.+|..|..++.+.+|..||+.. +||||++|++||||+||++||++ +.|.++++|.+||+|||+||++||+++|.
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 163 (184)
T 3o36_A 85 KCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSE 163 (184)
T ss_dssp HHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3777888999999999999999965 99999999999999999999998 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2279 550 FYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 550 i~~~A~~L~~~~~~~~~~~ 568 (830)
+|++|.+|++.|++.++++
T Consensus 164 v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 164 VANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=5.6e-25 Score=206.79 Aligned_cols=115 Identities=44% Similarity=0.795 Sum_probs=109.9
Q ss_pred ccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 466 LNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 466 l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
..|+...|+.+|+.|.+++.+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCC
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAAKTLNDA-GFDQI 580 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~~~~e~~-~~~~~ 580 (830)
++|.+|++|..|++.|..+++++++.++.. .++++
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~~~~~~~ 120 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQARRQAEKMGSGPSS 120 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTSBTTBC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999988 44443
No 6
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=1.3e-23 Score=215.85 Aligned_cols=98 Identities=28% Similarity=0.456 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhc---CCCCCHHHHHHHHHHhHHHHhhhCC---
Q psy2279 472 LLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKA---NQYLSLEDFENDFNLMVENCLTYNE--- 545 (830)
Q Consensus 472 ~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~---~~Y~s~~eF~~Dv~LI~~Na~~YN~--- 545 (830)
.|+.||..|..++.+.+|..||+. ++||||++|++||||+||++||++ +.|.++++|.+||+|||+||++||+
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 163 (207)
T 3u5n_A 85 KCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMK 163 (207)
T ss_dssp HHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcc
Confidence 477788889999999999999987 799999999999999999999997 7999999999999999999999999
Q ss_pred --------------CCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 546 --------------KDTIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 546 --------------~~s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
+++.++++|.+|+..|+..++++.+
T Consensus 164 ~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 164 VVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988764
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=197.91 Aligned_cols=107 Identities=36% Similarity=0.651 Sum_probs=101.9
Q ss_pred hccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 463 MIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 463 e~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
+....|+...|..+|+.|.+++.+.+|..||+...+||||++|++||||+||++||++|.|.++++|.+||+|||.||++
T Consensus 3 e~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 3 EVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
||+++|.+|++|..|++.|.++++...
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988753
No 8
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=195.19 Aligned_cols=108 Identities=33% Similarity=0.608 Sum_probs=102.1
Q ss_pred ccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 464 IKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 464 ~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
....|+...|..+|+.|..++.+++|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.|
T Consensus 9 ~~~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 9 NESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTY 88 (123)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGALINQAAKT 571 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~~~~~~~~~ 571 (830)
|+++|.+|++|..|.+.|.+.+.+.+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKERLL 116 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876543
No 9
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.89 E-value=4e-23 Score=191.69 Aligned_cols=101 Identities=29% Similarity=0.507 Sum_probs=97.1
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
.+...|..+|+.|.+++.+.+|..||+..++||||++|++||||+||++||++|.|.++++|.+||+|||+||+.||+++
T Consensus 7 ~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 86 (112)
T 3d7c_A 7 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 86 (112)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~~ 568 (830)
|.++++|..|++.|.+.++++
T Consensus 87 s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 87 SEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999888764
No 10
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=209.10 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcccCCcccccCCCCCCCCcccccC--CCCCHHhHHHHHhcC---CCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 472 LLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIK--QPMDLTTMTNKVKAN---QYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 472 ~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk--~PMdL~tI~~kl~~~---~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
.|+.||+.|..++.+++|.+||+ |+||++|+ +||||+||++||+++ .|.++++|.+||+|||+||++|| +
T Consensus 80 ~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~ 154 (189)
T 2ro1_A 80 KCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-E 154 (189)
T ss_dssp HHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-C
Confidence 36777888888999999999998 78999998 899999999999999 99999999999999999999999 5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2279 547 DTIFYKAGIKMKQVGGALINQAAKTL 572 (830)
Q Consensus 547 ~s~i~~~A~~L~~~~~~~~~~~~~~~ 572 (830)
++.++++|..|++.|+..++++....
T Consensus 155 ~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 155 DKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 88899999999999999998886543
No 11
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.88 E-value=7.2e-23 Score=191.50 Aligned_cols=103 Identities=32% Similarity=0.485 Sum_probs=99.0
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
.....|..+|+.|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+++
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
|.++++|..|++.|++.++++..
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 12
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.88 E-value=8.4e-23 Score=192.02 Aligned_cols=104 Identities=33% Similarity=0.583 Sum_probs=99.2
Q ss_pred ccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 466 LNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 466 l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
..|....|..||+.|.+++.+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+
T Consensus 11 ~~~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 90 (121)
T 1e6i_A 11 RGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90 (121)
T ss_dssp CCTTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
++|.+|++|..|++.|...++++.
T Consensus 91 ~~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 91 ENTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999988764
No 13
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=190.92 Aligned_cols=109 Identities=24% Similarity=0.449 Sum_probs=102.8
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEK 546 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~ 546 (830)
..+...|..+|+.|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2279 547 -DTIFYKAGIKMKQVGGALINQAAKTLNDA 575 (830)
Q Consensus 547 -~s~i~~~A~~L~~~~~~~~~~~~~~~e~~ 575 (830)
+|.+|++|..|++.|+..++++...++..
T Consensus 89 ~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 118 (123)
T 3q2e_A 89 KRSKIYSMTLRLSALFEEKMKKISSDFKIG 118 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 14
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=193.34 Aligned_cols=113 Identities=24% Similarity=0.420 Sum_probs=107.3
Q ss_pred cccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 465 ~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
....+...|..+|+.|..++.+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||.|||.||+.||
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2279 545 EK-DTIFYKAGIKMKQVGGALINQAAKTLNDAGF 577 (830)
Q Consensus 545 ~~-~s~i~~~A~~L~~~~~~~~~~~~~~~e~~~~ 577 (830)
++ +|.+|.+|..|++.|+..++++..+...+..
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~r 131 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALR 131 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 8999999999999999999999998887744
No 15
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.88 E-value=1.1e-22 Score=189.85 Aligned_cols=104 Identities=29% Similarity=0.512 Sum_probs=97.5
Q ss_pred ccccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 464 IKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 464 ~~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
..+.++...|..+|+.|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.|
T Consensus 12 ~~~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 91 (116)
T 3nxb_A 12 FELDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKY 91 (116)
T ss_dssp ---CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGALINQ 567 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~~~~~ 567 (830)
|+++|.++++|..|++.|++.+++
T Consensus 92 N~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 92 NGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998864
No 16
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=191.33 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=101.8
Q ss_pred chhhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHh
Q psy2279 468 PLNSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~ 541 (830)
.+...|+.+++.|.++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+
T Consensus 9 ~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 88 (126)
T 3mqm_A 9 RLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAE 88 (126)
T ss_dssp HHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 35667888888888754 389999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2279 542 TYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAG 576 (830)
Q Consensus 542 ~YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~e~~~ 576 (830)
.||+++|.+|++|..|++.|.+.++++...++++.
T Consensus 89 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i~ 123 (126)
T 3mqm_A 89 KYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEIV 123 (126)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998874
No 17
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.87 E-value=1.8e-22 Score=190.72 Aligned_cols=105 Identities=29% Similarity=0.505 Sum_probs=98.6
Q ss_pred cccchhhHHHHHHHHHhh------cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHH
Q psy2279 465 KLNPLNSLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVE 538 (830)
Q Consensus 465 ~l~pl~~~l~~il~~L~~------~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~ 538 (830)
...|+...|..+++.|.+ +..+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+
T Consensus 12 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 12 YMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356888999999999998 45579999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 539 NCLTYNEKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 539 Na~~YN~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
||+.||+++|.+|++|..|++.|.+.++++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888764
No 18
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.87 E-value=1.9e-22 Score=191.11 Aligned_cols=101 Identities=28% Similarity=0.460 Sum_probs=94.9
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
.+..+|+.||+.|.+++.+++|..||+.. .+||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 100 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45667888999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~ 568 (830)
++|.+|.+|..|++.|.+.++++
T Consensus 101 ~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 101 PGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999998887654
No 19
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.87 E-value=3.9e-22 Score=187.09 Aligned_cols=104 Identities=31% Similarity=0.476 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHhh-cccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 469 LNSLLLQLIDLIKA-RDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 469 l~~~l~~il~~L~~-~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
+...|..+|+.|.. +..+.+|..||++. ++||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+
T Consensus 12 l~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (119)
T 3p1f_A 12 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 91 (119)
T ss_dssp HHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 66778899999888 56899999999987 8999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAAKTL 572 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~~~~ 572 (830)
++|.+|++|.+|++.|+..++++.+.+
T Consensus 92 ~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 92 KTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887654
No 20
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=189.22 Aligned_cols=101 Identities=23% Similarity=0.469 Sum_probs=94.1
Q ss_pred chhhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHh
Q psy2279 468 PLNSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~ 541 (830)
.+...|..||+.|.++. .+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||+
T Consensus 13 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 92 (123)
T 2dat_A 13 KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQ 92 (123)
T ss_dssp HHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35667889999998874 588999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy2279 542 TYNEKDTIFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 542 ~YN~~~s~i~~~A~~L~~~~~~~~~~~ 568 (830)
+||+++|.+|++|..|++.|+..++++
T Consensus 93 ~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 93 TFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998888754
No 21
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.87 E-value=4.1e-22 Score=187.16 Aligned_cols=103 Identities=25% Similarity=0.476 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHhhccc------CCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARDT------GDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~------~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
+...|+.+++.|..... +.+|.+||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||+.
T Consensus 9 l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 88 (120)
T 3ljw_A 9 LKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKT 88 (120)
T ss_dssp HHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 56778889999888755 899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQAAKT 571 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~~~~~ 571 (830)
||+++|.+|++|.+|++.|.+.++++...
T Consensus 89 yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 89 YNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999987654
No 22
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.86 E-value=5.8e-22 Score=188.39 Aligned_cols=104 Identities=22% Similarity=0.492 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHhhcc-------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHh
Q psy2279 469 LNSLLLQLIDLIKARD-------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCL 541 (830)
Q Consensus 469 l~~~l~~il~~L~~~d-------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~ 541 (830)
+...|..||+.|.++. .+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+
T Consensus 12 l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 91 (129)
T 2grc_A 12 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQ 91 (129)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 5677999999999764 588999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2279 542 TYNEKDTIFYKAGIKMKQVGGALINQAAKTL 572 (830)
Q Consensus 542 ~YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~ 572 (830)
+||+++|.+|++|..|++.|...++++...-
T Consensus 92 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 122 (129)
T 2grc_A 92 TFNLEGSLIYEDSIVLQSVFTSVRQKIEKED 122 (129)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999887644
No 23
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.86 E-value=7.7e-22 Score=187.57 Aligned_cols=103 Identities=31% Similarity=0.465 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHhhccc------CCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARDT------GDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~------~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
+...++.+++.|.+... +.+|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.
T Consensus 18 l~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (130)
T 3k2j_A 18 LYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKR 97 (130)
T ss_dssp HHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45567777777776543 899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQAAKT 571 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~~~~~ 571 (830)
||+++|.+|++|..|++.|...++++...
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 98 YNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988764
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.86 E-value=7.9e-22 Score=195.24 Aligned_cols=103 Identities=29% Similarity=0.453 Sum_probs=95.3
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
..+...|..||..|..++.+.+|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 99 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 346678999999999999999999999975 699999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 545 ~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
+++|.++++|..|++.|.+.++++.
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 100 TSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998753
No 25
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.86 E-value=4.6e-22 Score=194.51 Aligned_cols=103 Identities=26% Similarity=0.436 Sum_probs=96.8
Q ss_pred cchhhHHHHHHHHHhhcccCCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 467 ~pl~~~l~~il~~L~~~d~~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
..+..+++.||+.|.+++.+++|..||+.. ++||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 31 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN 110 (154)
T 4alg_A 31 NQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 110 (154)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 346677888999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 545 ~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
++++.+|.+|..|++.|.+.++++.
T Consensus 111 ~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 111 KPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999998887754
No 26
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.86 E-value=2.1e-22 Score=189.24 Aligned_cols=106 Identities=27% Similarity=0.456 Sum_probs=98.2
Q ss_pred cccchhhHHHHHHHHHhhccc---CCcccccCCCCC--CCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHH
Q psy2279 465 KLNPLNSLLLQLIDLIKARDT---GDIFLEPVDVIE--VPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVEN 539 (830)
Q Consensus 465 ~l~pl~~~l~~il~~L~~~d~---~~~F~~PV~~~~--~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~N 539 (830)
.+....+.|..+|..|..++. +++|..||+... +||||++|++||||+||++||+++.|.++++|.+||+|||+|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 345567789999999998877 889999999887 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 540 CLTYNEKDTIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 540 a~~YN~~~s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
|++||+++|.++++|..|++.|++.++++..
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999998887654
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.86 E-value=9.3e-22 Score=192.99 Aligned_cols=109 Identities=27% Similarity=0.413 Sum_probs=100.0
Q ss_pred cchhhHHHHHHHH-HhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 467 NPLNSLLLQLIDL-IKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 467 ~pl~~~l~~il~~-L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
..+..+|..++.+ |..++.+++|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+
T Consensus 28 ~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 28 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4456667777665 778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAAKTLNDA 575 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~~~~e~~ 575 (830)
++|.+|++|..|.+.|...++++...+..+
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~l~~l 137 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQL 137 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887776554
No 28
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.86 E-value=5.3e-22 Score=188.86 Aligned_cols=99 Identities=29% Similarity=0.482 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhhccc---CCcccccCCCC--CCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 471 SLLLQLIDLIKARDT---GDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 471 ~~l~~il~~L~~~d~---~~~F~~PV~~~--~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
..|..||+.|..++. +++|..||+.. ++||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+
T Consensus 25 ~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 104 (130)
T 2ouo_A 25 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNP 104 (130)
T ss_dssp HHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 458889999988764 78999999986 5999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 546 KDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 546 ~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
++|.+|++|..|++.|+..++++.
T Consensus 105 ~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 105 PDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999987653
No 29
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=183.24 Aligned_cols=101 Identities=25% Similarity=0.400 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhh
Q psy2279 470 NSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTY 543 (830)
Q Consensus 470 ~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~Y 543 (830)
...|..+++.|.++. .+.+|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.|
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 86 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467888999998873 48999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 544 NEKDTIFYKAGIKMKQVGGALINQAAK 570 (830)
Q Consensus 544 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 570 (830)
|+++|.+|++|.+|++.|...++++.+
T Consensus 87 N~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 87 YKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988764
No 30
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=186.28 Aligned_cols=101 Identities=32% Similarity=0.561 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhc--CCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 470 NSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKA--NQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 470 ~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~--~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
...|..||..|..++.+.+|..||+. ++||||++|++||||+||++||++ +.|.++++|.+||+|||+||++||+++
T Consensus 22 ~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 100 (135)
T 2yyn_A 22 KRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPD 100 (135)
T ss_dssp HHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46799999999999999999999998 799999999999999999999998 599999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q psy2279 548 TIFYKAGIKMKQVGGALINQAAKT 571 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~~~~~ 571 (830)
|.+|++|..|++.|+..++++...
T Consensus 101 s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 101 SEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988877543
No 31
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.85 E-value=2.8e-21 Score=183.93 Aligned_cols=102 Identities=30% Similarity=0.520 Sum_probs=95.3
Q ss_pred cccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhC
Q psy2279 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 465 ~l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN 544 (830)
.+..+..+|+.+++.|..++.+++|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||
T Consensus 7 ~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (130)
T 3dai_A 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN 86 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHH----HHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIF----YKAGIKMKQVGGALIN 566 (830)
Q Consensus 545 ~~~s~i----~~~A~~L~~~~~~~~~ 566 (830)
+++|.+ +..|..|++.+..+++
T Consensus 87 ~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 87 PDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 998865 7888999998888886
No 32
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.83 E-value=5.1e-21 Score=191.29 Aligned_cols=97 Identities=33% Similarity=0.528 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHH
Q psy2279 472 LLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFY 551 (830)
Q Consensus 472 ~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~ 551 (830)
.|+.+|..|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+++|.+|
T Consensus 76 ~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 155 (174)
T 2ri7_A 76 GLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY 155 (174)
T ss_dssp HHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2279 552 KAGIKMKQVGGALINQA 568 (830)
Q Consensus 552 ~~A~~L~~~~~~~~~~~ 568 (830)
++|..|++.|.+.++++
T Consensus 156 ~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 156 QCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 33
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=183.19 Aligned_cols=90 Identities=23% Similarity=0.417 Sum_probs=84.1
Q ss_pred cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHHH
Q psy2279 483 RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGG 562 (830)
Q Consensus 483 ~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~~ 562 (830)
+..+.+|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+++|.+|++|..|++.|.
T Consensus 46 ~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~ 125 (150)
T 3tlp_A 46 RRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLK 125 (150)
T ss_dssp CBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy2279 563 ALINQAAKTL 572 (830)
Q Consensus 563 ~~~~~~~~~~ 572 (830)
..++++....
T Consensus 126 ~~~~~l~~~p 135 (150)
T 3tlp_A 126 EKRKELGPLP 135 (150)
T ss_dssp HHHHHHCCC-
T ss_pred HHHHHccCCC
Confidence 9988876433
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=174.19 Aligned_cols=96 Identities=32% Similarity=0.561 Sum_probs=89.3
Q ss_pred ccchhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCC
Q psy2279 466 LNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNE 545 (830)
Q Consensus 466 l~pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~ 545 (830)
+..+..+|+.+++.|..++.+.+|..| +||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 345678899999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCcH----HHHHHHHHHHHHHHHHH
Q psy2279 546 KDTI----FYKAGIKMKQVGGALIN 566 (830)
Q Consensus 546 ~~s~----i~~~A~~L~~~~~~~~~ 566 (830)
++|+ ++.+|..|++.+..+++
T Consensus 85 ~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 85 DKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9985 67899999999888774
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.80 E-value=1.5e-19 Score=192.34 Aligned_cols=107 Identities=27% Similarity=0.432 Sum_probs=101.8
Q ss_pred chhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 468 pl~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
.+..+|+.+|+.|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2279 548 TIFYKAGIKMKQVGGALINQAAKTLND 574 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~~~~~~e~ 574 (830)
|.++.+|..|.+.|...++++...+..
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~~~~~~ 120 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKEDKLAR 120 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999987766543
No 36
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.79 E-value=5.2e-19 Score=188.16 Aligned_cols=106 Identities=27% Similarity=0.434 Sum_probs=97.1
Q ss_pred hhhHHHHHHHH-HhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCC
Q psy2279 469 LNSLLLQLIDL-IKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547 (830)
Q Consensus 469 l~~~l~~il~~-L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~ 547 (830)
+..+|..++.+ |..++.+.+|..||+...+||||++|++||||+||++||++|.|.++++|.+||.|||+||+.||+++
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 44556665544 77888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2279 548 TIFYKAGIKMKQVGGALINQAAKTLND 574 (830)
Q Consensus 548 s~i~~~A~~L~~~~~~~~~~~~~~~e~ 574 (830)
|.+|++|..|.+.|...++++...+..
T Consensus 217 s~~~~~A~~l~~~~~~~~~~~~~~~~~ 243 (265)
T 3uv5_A 217 SQYTKTAQEIVNVCYQTLTEYDEHLTQ 243 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776654
No 37
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=191.91 Aligned_cols=106 Identities=27% Similarity=0.423 Sum_probs=95.8
Q ss_pred hhHHHHHHH-HHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCc
Q psy2279 470 NSLLLQLID-LIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548 (830)
Q Consensus 470 ~~~l~~il~-~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s 548 (830)
..++..++. .|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+++|
T Consensus 171 ~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 171 SFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344555443 4778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2279 549 IFYKAGIKMKQVGGALINQAAKTLNDA 575 (830)
Q Consensus 549 ~i~~~A~~L~~~~~~~~~~~~~~~e~~ 575 (830)
.+|.+|..|.+.|...++++...+..+
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l~~l 277 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHLTQL 277 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887766443
No 38
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=99.79 E-value=2e-20 Score=172.57 Aligned_cols=98 Identities=22% Similarity=0.462 Sum_probs=76.3
Q ss_pred CCCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCccc
Q psy2279 713 SHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEP 792 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~ 792 (830)
...|++|||||||++|||||||+|++|+. + +..+++.+.......|+|+||++. +++||+.++|.|
T Consensus 4 ~~~~~~GdlVwaK~~gyP~WPa~V~~p~~------------~-~~~~~~~~~~~~~~~~~V~FFg~~-~~aWv~~~~l~p 69 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESK------------M-TSVARKSKPKRAGTFYPVIFFPNK-EYLWTGSDSLTP 69 (109)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEECCGGG------------C-CHHHHHTCCCSSSCEEEEEETTTT-CCEEEEGGGEEE
T ss_pred cccCCCCCEEEEEeCCcCCCCEEEcccHH------------H-hHHhhccCCCCCCCEEEEEEcCCC-CEEEECHHHeee
Confidence 35789999999999999999999997632 2 356666554345788999999886 999999999999
Q ss_pred CCCChhhhhhhhcccCChhHHHHHHHHHHHHHhhcC
Q psy2279 793 LGITDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828 (830)
Q Consensus 793 l~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~~~ 828 (830)
|+.+. . ..++++++. .+|++..||++|+.|++
T Consensus 70 ~~~~~-~--~~~~~~~~~-k~k~l~~Ay~~A~~~~~ 101 (109)
T 1h3z_A 70 LTSEA-I--SQFLEKPKP-KTASLIKAYKMAQSTPD 101 (109)
T ss_dssp CCHHH-H--HHHHHSCSS-CCHHHHHHHHHHHHCCS
T ss_pred CCchH-H--HHHhhcccc-CCHHHHHHHHHHhccCC
Confidence 99754 2 223333332 46999999999999975
No 39
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=99.78 E-value=6.9e-21 Score=175.02 Aligned_cols=95 Identities=24% Similarity=0.461 Sum_probs=73.5
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||||||+|++|++ .|..+++. ..+...|+|+||++ ++|+||++++|.||
T Consensus 4 ~~~~~GdlVwaK~~gyP~WPa~V~~~~~-------------~p~~v~~~--~~~~~~~~V~FFg~-~~~aWv~~~~l~p~ 67 (108)
T 2l89_A 4 DRLNFGDRILVKAPGYPWWPALLLRRKE-------------TKDSLNTN--SSFNVLYKVLFFPD-FNFAWVKRNSVKPL 67 (108)
T ss_dssp CCCCTTEEEEEECSSSCEEEEEEEEEEE-------------EESSSCSS--SCEEEEEEEEETTT-TEEEEECGGGEEEC
T ss_pred CcccCCCEEEEEeCCcCCCceEecCccc-------------CcHHHhhc--cCCCCeEEEEECCC-CCEEEEchhhceeC
Confidence 5788999999999999999999999855 23444432 23466899999986 79999999999999
Q ss_pred CCChhhhhhhhcccCChhHHHHHHHHHHHHHhhcC
Q psy2279 794 GITDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828 (830)
Q Consensus 794 ~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~~~ 828 (830)
+.+...+.+ +++|.+. |+++.||++|++|.+
T Consensus 68 ~~~~~~~~~---~~~k~k~-k~l~~Aye~A~~~~~ 98 (108)
T 2l89_A 68 LDSEIAKFL---GSSKRKS-KELIEAYEASKTPPD 98 (108)
T ss_dssp CHHHHHHHH---HCSSSCC-HHHHHHHHHHTCGGG
T ss_pred CHHHHHHHH---hccCCCC-HHHHHHHHHHccCCC
Confidence 976533332 2222222 899999999999865
No 40
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.75 E-value=7.5e-19 Score=189.27 Aligned_cols=104 Identities=28% Similarity=0.446 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCc
Q psy2279 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDT 548 (830)
Q Consensus 469 l~~~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s 548 (830)
+..+|..+|+.|..++.+.+|..||+...+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+++|
T Consensus 48 l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 127 (292)
T 3aad_A 48 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 127 (292)
T ss_dssp HHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCch
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy2279 549 IFYKAGIKMKQVGGALINQAAKTL 572 (830)
Q Consensus 549 ~i~~~A~~L~~~~~~~~~~~~~~~ 572 (830)
.++.+|..|.+.|...++++..++
T Consensus 128 ~i~~~A~~L~~~~~~~~~~~~~~~ 151 (292)
T 3aad_A 128 SLTQISQSMLDLCDEKLKEKEDKL 151 (292)
T ss_dssp HHHHHHTHHHHTTTTTGGGSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcchhhh
Confidence 999999999999998887765544
No 41
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=153.95 Aligned_cols=77 Identities=65% Similarity=1.261 Sum_probs=66.6
Q ss_pred ccccccccCcccccccCCCCcceeeecCCCCCcccchhhhhhcCcccccccccCCC-CCCceeeeEEEeCCCCCCCCC
Q psy2279 237 EAIPAARWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIRDHS-GVEPVVVQKLAYCDAHTPPDV 313 (830)
Q Consensus 237 ~~i~~~r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~~~~~~~~~~~~-~~~~~~v~~~~~C~~H~~~~~ 313 (830)
-+||++||+|+|++|++++.||||||..++|.++|||+||+++|++|+++...... ++....+++.+||++|+|+++
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg~ 86 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGS 86 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSSC
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcCC
Confidence 47999999999999998767999999999999999999999999999987654332 345567788999999999975
No 42
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-19 Score=168.28 Aligned_cols=91 Identities=30% Similarity=0.524 Sum_probs=72.5
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||||||+|++|... + ..++..+....|+|+||++.++|+||+.+.|.||
T Consensus 21 ~~~~~GdlVwaK~~g~P~WPa~V~~~~~~-~---------------~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf 84 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEGYPWWPSLVYNHPFD-G---------------TFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPY 84 (134)
T ss_dssp CCCCTTSEEEECCTTSCCEEEECCCCSST-T---------------CCEEESSSCEEEEEEECSSSCEEEEECGGGEEES
T ss_pred CCCCCCCEEEEeecCCCCCCeeecchhhh-h---------------hhhhccCCCceEEEEECCCCCceEEECHHHcccC
Confidence 46889999999999999999999997220 1 1122233446799999999899999999999999
Q ss_pred CCChhhhhh--hhcccCChhHHHHHHHHH
Q psy2279 794 GITDELDQI--KLMESRKPADRKAVKKAY 820 (830)
Q Consensus 794 ~~~~~~d~~--~~~~~~~~~~rk~~~~a~ 820 (830)
+.+...+.. +++.+++..+++|+++|.
T Consensus 85 ~~~~~~~~~k~~~~~~~~~~~~~Ai~~A~ 113 (134)
T 2gfu_A 85 TGSKSKEAQKGGHFYSAKPEILRAMQRAD 113 (134)
T ss_dssp CCTTSTTTSTTCTTCCCCHHHHHHHHHHH
T ss_pred cchhHHHHhhcccchhccHHHHHHHHHHH
Confidence 987776553 456788888999998885
No 43
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.72 E-value=8.3e-18 Score=182.30 Aligned_cols=94 Identities=26% Similarity=0.459 Sum_probs=86.8
Q ss_pred hcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHH
Q psy2279 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVG 561 (830)
Q Consensus 482 ~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~ 561 (830)
.+..+++|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+++|.+|++|..|++.|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHhhhh
Q psy2279 562 GALINQA-AKTLNDA 575 (830)
Q Consensus 562 ~~~~~~~-~~~~e~~ 575 (830)
...+++. ...++..
T Consensus 257 ~~~~~~~~~p~~~~~ 271 (311)
T 2r0y_A 257 NYLIQKEFFPELQDL 271 (311)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCcchhh
Confidence 9999973 4444433
No 44
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.71 E-value=1.6e-17 Score=183.86 Aligned_cols=94 Identities=26% Similarity=0.459 Sum_probs=86.6
Q ss_pred hcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHHHHHHHHHHHH
Q psy2279 482 ARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVG 561 (830)
Q Consensus 482 ~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~~~A~~L~~~~ 561 (830)
.+..+++|..||+..++||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+++|.+|.+|..|++.|
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 306 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHhhhh
Q psy2279 562 GALINQA-AKTLNDA 575 (830)
Q Consensus 562 ~~~~~~~-~~~~e~~ 575 (830)
...+++. ...++..
T Consensus 307 ~~~~~~~~~p~~~~~ 321 (361)
T 2r10_A 307 NYLIQKEFFPELQDL 321 (361)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCcchhh
Confidence 9999973 4444433
No 45
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=99.68 E-value=2.2e-17 Score=152.50 Aligned_cols=91 Identities=29% Similarity=0.467 Sum_probs=66.4
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..+.+|||||||++|||||||+|++|++ .|..++.++.. ...|+|+||++ ++++||++++|.||
T Consensus 7 ~~~~~GdlVwaK~~g~p~WPa~V~~~~~-------------~p~~~~~~~~~--~~~~~V~FFg~-~~~awv~~~~l~p~ 70 (110)
T 2daq_A 7 GKLHYKQIVWVKLGNYRWWPAEICNPRS-------------VPLNIQGLKHD--LGDFPVFFFGS-HDYYWVHQGRVFPY 70 (110)
T ss_dssp CSCCSSEEEEEECSSSCEEEEEECCTTT-------------SCHHHHTSCCC--SSCEEEEETTT-TEEEEECSSSSEEC
T ss_pred CCCCCCCEEEEEeCCCCCCceeeCChhh-------------CCHHHhhccCC--CCcEEEEEecC-CCEEEEcHHHCcCc
Confidence 4577999999999999999999999955 36677766533 34599999985 89999999999999
Q ss_pred CCChhhhhhhhcccCChhHHHHHHHHHHHHHh
Q psy2279 794 GITDELDQIKLMESRKPADRKAVKKAYQEALV 825 (830)
Q Consensus 794 ~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~ 825 (830)
.......+. ...+ .+++.+.|+++|.+
T Consensus 71 ~~~~~~~~~-~~~~----~~k~f~~Al~eA~~ 97 (110)
T 2daq_A 71 VEGDKSFAE-GQTS----INKTFKKALEEAAK 97 (110)
T ss_dssp CSSCCSSSC-SSCC----CCSHHHHHHHHHHH
T ss_pred chhhHHHhh-hccc----chHHHHHHHHHHHH
Confidence 976542211 1122 34555555555544
No 46
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.67 E-value=5.6e-17 Score=179.56 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=93.9
Q ss_pred hccccchhhHHHHHHHHHhhc--ccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCC-CHHHHHHHHHHhHHH
Q psy2279 463 MIKLNPLNSLLLQLIDLIKAR--DTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL-SLEDFENDFNLMVEN 539 (830)
Q Consensus 463 e~~l~pl~~~l~~il~~L~~~--d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~-s~~eF~~Dv~LI~~N 539 (830)
...+.++..+|..+|+.+.+. ..+.+|..||+...+||||+||++||||+||++|| +.|. ++++|.+||+|||+|
T Consensus 73 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 73 DWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHH
Confidence 345677888899999988764 44799999999999999999999999999999998 5665 899999999999999
Q ss_pred HhhhCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy2279 540 CLTYNEKDTIFYKAGIKMKQVGGALINQA 568 (830)
Q Consensus 540 a~~YN~~~s~i~~~A~~L~~~~~~~~~~~ 568 (830)
|+.||+++|.+|++|..|++.|...|.++
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999888765
No 47
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.64 E-value=1.4e-16 Score=172.65 Aligned_cols=100 Identities=22% Similarity=0.348 Sum_probs=86.8
Q ss_pred chhhHHHHHHHHHhh--cccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCC-CHHHHHHHHHHhHHHHhhhC
Q psy2279 468 PLNSLLLQLIDLIKA--RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL-SLEDFENDFNLMVENCLTYN 544 (830)
Q Consensus 468 pl~~~l~~il~~L~~--~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~-s~~eF~~Dv~LI~~Na~~YN 544 (830)
++..++..+|+.+.+ +..+.+|.+||+...+||||++|++||||+||++|| +.|. ++++|.+||+|||+||++||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 344455555555554 346889999999999999999999999999999998 6666 89999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Q psy2279 545 EKDTIFYKAGIKMKQVGGALINQAA 569 (830)
Q Consensus 545 ~~~s~i~~~A~~L~~~~~~~~~~~~ 569 (830)
+++|.+|++|.+|++.|.+.+.++.
T Consensus 106 ~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 106 EYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999887763
No 48
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=142.39 Aligned_cols=101 Identities=19% Similarity=0.338 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHhhcc------cCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhh
Q psy2279 469 LNSLLLQLIDLIKARD------TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLT 542 (830)
Q Consensus 469 l~~~l~~il~~L~~~d------~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~ 542 (830)
+..++..+++.+..+. .+.+|.+.++.. |+||. ++||+|.+|++||+++.|.++++|..||.|||.||++
T Consensus 8 lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~ 83 (147)
T 3iu6_A 8 IQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARR 83 (147)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567788888888753 378899887776 89998 9999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2279 543 YNEKDTIFYKAGIKMKQVGGALINQAAKTLN 573 (830)
Q Consensus 543 YN~~~s~i~~~A~~L~~~~~~~~~~~~~~~e 573 (830)
||.++|.||.+|..|+++|...++++.+.-+
T Consensus 84 yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 84 MNRTDSEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999998887644
No 49
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=99.54 E-value=1.7e-15 Score=146.27 Aligned_cols=91 Identities=22% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||||||+|++|.+.. ........|+|+||++ ++++||++++|.||
T Consensus 10 ~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~-------------------~~~~~~~~~~V~FFG~-~~~awv~~~~L~p~ 69 (147)
T 1khc_A 10 KEFGIGDLVWGKIKGFSWWPAMVVSWKATS-------------------KRQAMPGMRWVQWFGD-GKFSEISADKLVAL 69 (147)
T ss_dssp SSCCTTCEEEEEETTTEEEEEEEECGGGTT-------------------SCCCCTTEEEEEETTT-CCEEEEEGGGCEET
T ss_pred ccCcCCCEEEEecCCcCCCCEEeccchhhh-------------------cccCCCCeEEEEEecC-CCEEEEcHHHCccc
Confidence 578999999999999999999999985522 0011345799999987 59999999999999
Q ss_pred CCChhhhhhhhcccCChhHHHHHHHHHHHHHh
Q psy2279 794 GITDELDQIKLMESRKPADRKAVKKAYQEALV 825 (830)
Q Consensus 794 ~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~ 825 (830)
+...+.-..+ ...++...++||..|++.|..
T Consensus 70 ~~~~e~f~~~-~~~K~~~f~kAv~eA~e~A~~ 100 (147)
T 1khc_A 70 GLFSQHFNLA-TFNKLVSYRKAMYHTLEKARV 100 (147)
T ss_dssp TSHHHHCCHH-HHHHCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhh-ccccHHHHHHHHHHHHHHHHH
Confidence 8543321111 122457789999999888864
No 50
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=99.53 E-value=1.2e-15 Score=140.37 Aligned_cols=83 Identities=30% Similarity=0.429 Sum_probs=60.8
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||||||+|+++ |. ..+ +.....|+|+||++ ++++||+.++|.||
T Consensus 18 ~~~~~GdlVwaK~kGyP~WPa~V~~~--p~--------------~~~----k~~~~~~~V~FFGt-~~~awv~~~~l~pf 76 (110)
T 1ri0_A 18 KEYKCGDLVFAKMKGYPHWPARIDEM--PE--------------AAV----KSTANKYQVFFFGT-HETAFLGPKDLFPY 76 (110)
T ss_dssp SSCCTTCEEEEEETTEEEEEEEEECC--CS--------------SSS----CCCSSCEEEEETTT-TEEEEECSTTEECH
T ss_pred CCCCCCCEEEEEeCCCCCCCEEEecc--cH--------------hhc----CCCCCEEEEEEecC-CCEEEECHHHccch
Confidence 67899999999999999999999975 32 111 23466799999987 59999999999999
Q ss_pred CCChhhhhhhhcccCChhHHHHHHHHHHHHH
Q psy2279 794 GITDELDQIKLMESRKPADRKAVKKAYQEAL 824 (830)
Q Consensus 794 ~~~~~~d~~~~~~~~~~~~rk~~~~a~~~a~ 824 (830)
..+ +.++...+| +|+.+.|+++|-
T Consensus 77 ~~~----~~k~~~~~K---~k~f~~Al~Eie 100 (110)
T 1ri0_A 77 EES----KEKFGKPNK---RKGFSEGLWEIE 100 (110)
T ss_dssp HHH----HHHCCCCCC---CHHHHHHHHHHH
T ss_pred hhh----HHHHccccc---cHHHHHHHHHHH
Confidence 742 234444433 355555555543
No 51
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=99.52 E-value=4.3e-15 Score=143.77 Aligned_cols=94 Identities=27% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCCCCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCC
Q psy2279 710 VSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNK 789 (830)
Q Consensus 710 ~~~~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~ 789 (830)
+.+...|.+|||||||++|||||||+|+++.. .. +.......|+|+||++. +++||+.++
T Consensus 11 ~~dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~----------------~~---k~~~~~~~~~V~FFG~~-~~awv~~~~ 70 (154)
T 3llr_A 11 YEDGRGFGIGELVWGKLRGFSWWPGRIVSWWM----------------TG---RSRAAEGTRWVMWFGDG-KFSVVCVEK 70 (154)
T ss_dssp CCSSCCCCTTCEEEECCTTSCCEEEEEECGGG----------------TT---SCCCCTTEEEEEETTTC-CEEEEEGGG
T ss_pred cccCCCCccCCEEEEecCCCCCCCEEEecccc----------------cc---cccCCCCEEEEEEeCCC-CEEEEcHHH
Confidence 44457899999999999999999999999832 00 11234457999999875 999999999
Q ss_pred cccCCCChh-hhhhhhcccCChhHHHHHHHHHHHHHh
Q psy2279 790 LEPLGITDE-LDQIKLMESRKPADRKAVKKAYQEALV 825 (830)
Q Consensus 790 ~~~l~~~~~-~d~~~~~~~~~~~~rk~~~~a~~~a~~ 825 (830)
|.||..+.+ +... ...++...|+||.+|++.|..
T Consensus 71 L~pf~e~~e~f~~~--~~~K~~~fr~AV~eAle~a~~ 105 (154)
T 3llr_A 71 LMPLSSFCSAFHQA--TYNKQPMYRKAIYEVLQVASS 105 (154)
T ss_dssp EEEGGGHHHHCCHH--HHHHCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHhhh--hccchHHHHHHHHHHHHHHHH
Confidence 999986532 2222 234678899999999999873
No 52
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=99.42 E-value=3.9e-14 Score=138.29 Aligned_cols=60 Identities=25% Similarity=0.416 Sum_probs=48.5
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||||||+|++|.+. ........|+|+||++ ++++||+.+.|.||
T Consensus 21 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~~--------------------~~~~~~~~~~V~FfG~-~~~awv~~~~l~~f 79 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKGYPHWPARVDEVPDG--------------------AVKPPTNKLPIFFFGT-HETAFLGPKDIFPY 79 (153)
T ss_dssp GGCCTTCEEEECCTTSCCEEEEECCCC-----------------------CCCCTTCEEEEETTT-CCEEEECGGGEEEH
T ss_pred cCCCCCCEEEEeCCCCCCCCEEEeEchhh--------------------ccCCCCCEEEEEecCC-CCeEEeCHHHccCh
Confidence 57889999999999999999999987331 0112234599999977 69999999999999
Q ss_pred C
Q psy2279 794 G 794 (830)
Q Consensus 794 ~ 794 (830)
.
T Consensus 80 ~ 80 (153)
T 4fu6_A 80 S 80 (153)
T ss_dssp H
T ss_pred H
Confidence 6
No 53
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=99.40 E-value=1e-13 Score=124.05 Aligned_cols=60 Identities=33% Similarity=0.547 Sum_probs=49.1
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|.+|||||||++|||||||+|+++.+ |. . +.....|+|+||++ ++++||+.+.|.||
T Consensus 4 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~--~~----------------~--k~~~~~~~V~FFGt-~~~awv~~~~l~pf 62 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYPHWPARIDDIAD--GA----------------V--KPPPNKYPIFFFGT-HETAFLGPKDLFPY 62 (94)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEECCCCT--TS----------------B--CCCTTCEEEEETTT-CCEEEECGGGEEEH
T ss_pred CcCccCCEEEEecCCCCCCCEEEeeccc--cc----------------c--cCCCCEEEEEEEcC-CCcceEchhHeeEH
Confidence 4688999999999999999999998732 10 0 12345699999976 79999999999999
Q ss_pred C
Q psy2279 794 G 794 (830)
Q Consensus 794 ~ 794 (830)
.
T Consensus 63 ~ 63 (94)
T 3qby_A 63 D 63 (94)
T ss_dssp H
T ss_pred H
Confidence 8
No 54
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.35 E-value=1e-12 Score=131.22 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhcccCCcccccCCCCCCCCcccccCCCCCHHhHHHHHhcCCCCCHHHHHHHHHHhHHHHhhhCCCCcHHH
Q psy2279 472 LLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFY 551 (830)
Q Consensus 472 ~l~~il~~L~~~d~~~~F~~PV~~~~~PdY~~iIk~PMdL~tI~~kl~~~~Y~s~~eF~~Dv~LI~~Na~~YN~~~s~i~ 551 (830)
.|+.||+.|..++.+.+|.+. .++.||||++|++||+.+.|.++.+|.+||.|||+||..||.+++.+.
T Consensus 79 ~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~ 147 (183)
T 3lqh_A 79 SLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIK 147 (183)
T ss_dssp HHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhh
Confidence 377788888888888898763 259999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy2279 552 KAGIKMKQVGGALINQAAKTLND 574 (830)
Q Consensus 552 ~~A~~L~~~~~~~~~~~~~~~e~ 574 (830)
+++..|+.+|.+.++++.+++..
T Consensus 148 ~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 148 KANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCG
T ss_pred hhhhHHHHHHHHHHHHHCCCCCc
Confidence 99999999999999999887754
No 55
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-13 Score=114.90 Aligned_cols=56 Identities=80% Similarity=1.624 Sum_probs=50.9
Q ss_pred CCCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCC
Q psy2279 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 130 ~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
+...++..|.||+++++++.|.||+||+|+.+||+.|||++.+|+|.|+|+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567899999999988888999999999999999999999999999999999754
No 56
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.22 E-value=2.1e-12 Score=114.03 Aligned_cols=56 Identities=80% Similarity=1.624 Sum_probs=51.2
Q ss_pred CCCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCC
Q psy2279 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 130 ~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
...+++..|.||+++++.+.|.||+||+|+.+||+.|||++.+|+|.|+|+.|...
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 45678899999999987788999999999999999999999999999999999753
No 57
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.06 E-value=4.2e-11 Score=100.01 Aligned_cols=53 Identities=32% Similarity=0.827 Sum_probs=47.7
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccccc----c-CCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY----I-PEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~----i-peg~W~C~~C~~~ 185 (830)
.++..|.||+.++.++.+.||+||+|+.+||+.||+++. + |+|.|+|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 467899999999888889999999999999999999865 4 8999999999854
No 58
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.05 E-value=3.6e-11 Score=106.14 Aligned_cols=53 Identities=26% Similarity=0.650 Sum_probs=47.4
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccccc------cCCCceeeeccCC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY------IPEGQWLCRRCLH 184 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~------ipeg~W~C~~C~~ 184 (830)
.+++.+|.||..++..+.|.||+||+|+.+||+.||+++. +|+|.|+|..|..
T Consensus 13 ~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 3457899999999887789999999999999999999874 7999999999974
No 59
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.82 E-value=4.1e-09 Score=95.92 Aligned_cols=75 Identities=27% Similarity=0.566 Sum_probs=62.5
Q ss_pred CCCCCcccccccCCCcCCCCceEEec--CcCcccccccccccccCCCceeeeccCC---CCCCCcccccCCCC------C
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCD--MCNLAVHQDCYGVPYIPEGQWLCRRCLH---TPSRAVDCVLCPNN------G 199 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~CyGi~~ipeg~W~C~~C~~---~~~~~~~C~lC~~~------g 199 (830)
..+++..|.||+++ ++||.|| +|..+||..|+|+..+|+|.|+|..|.- +....+.|.+||.. .
T Consensus 11 ~~~~~~~C~~C~~~-----G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 11 KQMHEDYCFQCGDG-----GELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp CCSSCSSCTTTCCC-----SEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCCEECSSSSCEECTTTCT
T ss_pred cCCCCCCCCcCCCC-----CcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCCCCCcCcCCCCcchhhhccC
Confidence 44678899999965 7899999 8999999999999999999999998863 23445889999954 5
Q ss_pred CCcccccCCCc
Q psy2279 200 GAFKLTDRGAW 210 (830)
Q Consensus 200 Ga~k~t~~~~W 210 (830)
|+++.+..+.|
T Consensus 86 g~l~~~~~~~~ 96 (107)
T 4gne_A 86 GALVPSALEGR 96 (107)
T ss_dssp TSCEECTTTTC
T ss_pred CcceecCCCCc
Confidence 88888777777
No 60
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.72 E-value=4.2e-09 Score=83.26 Aligned_cols=48 Identities=31% Similarity=0.848 Sum_probs=41.2
Q ss_pred cccccccCCCcCCCCceEEecCcCccccccccc--ccccCCCceeeeccCCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYG--VPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG--i~~ipeg~W~C~~C~~~ 185 (830)
+.|.||+.++ +.+.||.||+|+.+||+.|++ +..+|+|.|+|..|...
T Consensus 1 a~C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 1 ARCKVCRKKG--EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCCTTTCCSS--CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCC--CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 4699999874 457999999999999999995 45689999999999753
No 61
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.72 E-value=5.4e-09 Score=85.76 Aligned_cols=48 Identities=40% Similarity=1.015 Sum_probs=42.1
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~~~ 185 (830)
.++..|.||.++ +.||.||+|..+||+.|+++ ..+|+|.|+|..|...
T Consensus 7 ~~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 357889999975 68999999999999999995 4589999999999864
No 62
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.68 E-value=9.1e-09 Score=85.65 Aligned_cols=48 Identities=31% Similarity=0.596 Sum_probs=41.5
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccccc--ccCCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~--~ipeg~W~C~~C~~~ 185 (830)
..+..|.||+++ +.||.||+|..+||+.|+.++ .+|+|.|+|..|...
T Consensus 10 ~~~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC-----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC-----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456789999865 679999999999999999765 589999999999854
No 63
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.66 E-value=8e-09 Score=86.15 Aligned_cols=48 Identities=38% Similarity=0.962 Sum_probs=42.5
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~~~ 185 (830)
+++..|.||.++ +.||.||+|..+||..|+++ ..+|+|.|+|..|...
T Consensus 6 ~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG-----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC-----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC-----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 468899999976 68999999999999999995 4589999999999854
No 64
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.65 E-value=9.5e-09 Score=84.31 Aligned_cols=49 Identities=35% Similarity=0.858 Sum_probs=43.2
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccccc--ccCCCceeeeccCC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLH 184 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~--~ipeg~W~C~~C~~ 184 (830)
..+++..|.||..+ +.||.||+|..+||..|++++ .+|+|.|+|..|..
T Consensus 7 ~~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG-----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC-----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC-----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34568899999975 789999999999999999985 58999999999974
No 65
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.64 E-value=2.9e-08 Score=91.45 Aligned_cols=49 Identities=22% Similarity=0.650 Sum_probs=41.8
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccccccc--CCCceeeeccC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRCL 183 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i--peg~W~C~~C~ 183 (830)
.+++.|.||.++. +.+.||.|+.|..+||+.|++++.. +.+.|+|..|.
T Consensus 5 ~~~~~C~~C~~~g--~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPG--DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCC--CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCC--CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4688999999874 3467899999999999999998764 57899999986
No 66
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=81.83 Aligned_cols=47 Identities=36% Similarity=0.982 Sum_probs=41.5
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCL 183 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~ 183 (830)
..++..|.||+.+ +.||.||.|..+||+.|+++ ..+|+|.|+|..|.
T Consensus 6 ~~~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS-----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC-----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3467899999985 68999999999999999995 45899999999996
No 67
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=83.32 Aligned_cols=46 Identities=37% Similarity=1.019 Sum_probs=41.0
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~~ 184 (830)
++..|.||+.+ +.||.||+|..+||+.|+++ ..+|+|.|+|..|..
T Consensus 4 ~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC-----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC-----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 57899999986 68999999999999999994 458999999999964
No 68
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.61 E-value=1.9e-08 Score=87.99 Aligned_cols=49 Identities=24% Similarity=0.789 Sum_probs=42.7
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccc--cccccCCCceeeeccCCC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCY--GVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~Cy--Gi~~ipeg~W~C~~C~~~ 185 (830)
.+++..|.||+.+ +.||.||.|..+||..|+ ++..+|+|.|+|..|...
T Consensus 22 d~n~~~C~vC~~~-----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS-----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC-----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4567899999986 579999999999999999 555689999999999854
No 69
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.60 E-value=2.5e-08 Score=92.04 Aligned_cols=51 Identities=20% Similarity=0.576 Sum_probs=42.3
Q ss_pred CCCcccccccCCCcC----CCCceEEecCcCccccccccccc-----ccCCCceeeeccC
Q psy2279 133 DDEAVCCICNDGECQ----NSNVILFCDMCNLAVHQDCYGVP-----YIPEGQWLCRRCL 183 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~----~~n~iv~Cd~C~~~vHq~CyGi~-----~ipeg~W~C~~C~ 183 (830)
....+|.+|...+.. ..+.||+|++|+.+||..|++.. .++++.|+|..|+
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 356889999886532 35689999999999999999863 4688999999997
No 70
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=2.3e-08 Score=88.93 Aligned_cols=52 Identities=35% Similarity=0.869 Sum_probs=44.4
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccCC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLH 184 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~~ 184 (830)
...++..|.||..+. +.+.||.||+|..+||+.|+++ ..+|+|.|+|..|..
T Consensus 12 ~~~~~~~C~vC~~~~--~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGD--EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSG--GGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcC--CCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345678999999874 3578999999999999999995 458999999999974
No 71
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.8e-07 Score=80.21 Aligned_cols=48 Identities=33% Similarity=0.839 Sum_probs=41.2
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccc--cccCCC-ceeeeccCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEG-QWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg-~W~C~~C~~ 184 (830)
+-.|.||+..+ +.+.||+||+|..+||+.|+++ ..+|+| .|+|..|..
T Consensus 26 ~c~C~vC~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKH--EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCC--CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcC--CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34899999764 5689999999999999999995 458999 999999974
No 72
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.35 E-value=1.6e-07 Score=86.88 Aligned_cols=75 Identities=21% Similarity=0.561 Sum_probs=59.4
Q ss_pred cccccccCCCcC-----CCCceEEecCcCccccccccccc-----ccCCCceeeeccCCCCCCCcccccCCCC--CCCcc
Q psy2279 136 AVCCICNDGECQ-----NSNVILFCDMCNLAVHQDCYGVP-----YIPEGQWLCRRCLHTPSRAVDCVLCPNN--GGAFK 203 (830)
Q Consensus 136 ~~C~VC~~~e~~-----~~n~iv~Cd~C~~~vHq~CyGi~-----~ipeg~W~C~~C~~~~~~~~~C~lC~~~--gGa~k 203 (830)
..|.+|.+++.. +.+.||+|++|+.+||..|+++. .++++.|+|..|. .|.+|... +|.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~-------~C~~C~~~~~~~~ll 74 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK-------SCILCGTSENDDQLL 74 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC-------CCTTTTCCTTTTTEE
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC-------ccCcccccCCCCceE
Confidence 579999887633 35699999999999999999986 4788999999996 58899875 34444
Q ss_pred cc-cCCCcccccccc
Q psy2279 204 LT-DRGAWAHVVCAL 217 (830)
Q Consensus 204 ~t-~~~~W~Hv~Cal 217 (830)
.. .-..++|+.|.-
T Consensus 75 ~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 75 FCDDCDRGYHMYCLN 89 (114)
T ss_dssp ECSSSCCEEETTTSS
T ss_pred EcCCCCccccccccC
Confidence 43 345899999974
No 73
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.31 E-value=2.4e-07 Score=78.07 Aligned_cols=46 Identities=28% Similarity=0.890 Sum_probs=39.3
Q ss_pred ccccccCCCcCCCCceEEecCcCcccccccccc--cccCCC-ceeeeccCC
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEG-QWLCRRCLH 184 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg-~W~C~~C~~ 184 (830)
.|.||+..+ +.+.||.||+|..+||+.|+++ ..+|+| .|+|..|..
T Consensus 20 ~C~~C~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS--CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC--CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 677888653 4589999999999999999994 458999 999999974
No 74
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.22 E-value=4.4e-07 Score=77.74 Aligned_cols=46 Identities=30% Similarity=0.936 Sum_probs=38.4
Q ss_pred ccccccCCCcCCCCceEEecCcCccccccccccc--ccCCCc-eeeeccCC
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQ-WLCRRCLH 184 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~--~ipeg~-W~C~~C~~ 184 (830)
.|.||+..+ +.+.||+||+|..+||+.|++++ .+|+|. |+|..|+.
T Consensus 28 ~C~vC~~~~--d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS--CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC--CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577777654 55889999999999999999955 589998 99999974
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.22 E-value=7.8e-07 Score=75.08 Aligned_cols=50 Identities=28% Similarity=0.813 Sum_probs=41.9
Q ss_pred CCCcccccccCCCcCCCCceEEecC--cC-cccccccccccccCCCceeeeccCCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDM--CN-LAVHQDCYGVPYIPEGQWLCRRCLHTP 186 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~--C~-~~vHq~CyGi~~ipeg~W~C~~C~~~~ 186 (830)
+++..| +|+... .+.||.||+ |. ..||..|+|+..+|.|.|+|..|....
T Consensus 14 ~~~~~C-~C~~~~---~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCS---CSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCC---CCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 345677 899874 267999999 77 589999999999999999999998653
No 76
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.21 E-value=2.7e-07 Score=75.33 Aligned_cols=47 Identities=30% Similarity=0.847 Sum_probs=39.6
Q ss_pred CCcccccccCCCcCCCCceEEecC--cC-cccccccccccccCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDM--CN-LAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~--C~-~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
+...| ||+... .+.||.||+ |. ..||..|+|+..+|.|.|+|..|..
T Consensus 9 e~~~C-~C~~~~---~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC---CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 44566 999864 368999999 55 6899999999999999999999974
No 77
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.17 E-value=5.7e-07 Score=79.17 Aligned_cols=48 Identities=27% Similarity=0.735 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcC---cccccccccccccCCCceeeec-cC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCN---LAVHQDCYGVPYIPEGQWLCRR-CL 183 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~---~~vHq~CyGi~~ipeg~W~C~~-C~ 183 (830)
.++...| ||+..+. +.||.||+|+ ..||..|+|+..+|.|.|+|.. |.
T Consensus 23 ~~~~~yC-iC~~~~~---g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY---GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCCS---SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHH
T ss_pred CCCCcEE-EeCCCCC---CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhc
Confidence 3455677 9998643 5799999977 7899999999999999999999 86
No 78
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.14 E-value=4.9e-07 Score=73.49 Aligned_cols=48 Identities=27% Similarity=0.820 Sum_probs=40.1
Q ss_pred CCCcccccccCCCcCCCCceEEecC--cC-cccccccccccccCCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDM--CN-LAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~--C~-~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
+++..| +|+..+ .+.||.||+ |. -.||..|.|+..+|.|.|+|..|..
T Consensus 7 ~e~~yC-~C~~~~---~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS---YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC---CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 345666 999864 368999999 76 5999999999999999999999974
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.10 E-value=6.7e-07 Score=73.44 Aligned_cols=49 Identities=27% Similarity=0.735 Sum_probs=40.4
Q ss_pred CCCcccccccCCCcCCCCceEEecCcC---cccccccccccccCCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCN---LAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~---~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
++...| +|+... .+.||.||+|+ ..||..|.|+..+|.|.|+|..|...
T Consensus 9 ~e~~yC-~C~~~~---~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVS---YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCC---CCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 345666 999863 25899999955 89999999999999999999999754
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.08 E-value=9.7e-07 Score=75.35 Aligned_cols=50 Identities=28% Similarity=0.675 Sum_probs=41.9
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccccccc--CCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i--peg~W~C~~C~~ 184 (830)
+++..|.||+..+ ++..||.||+|...||..|+|++.. +.+.|+|..|..
T Consensus 16 ~~~~~C~~C~~~~--~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPD--DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCC--SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCC--CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3456899999874 3568999999999999999999875 458999999974
No 81
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.07 E-value=1.2e-06 Score=81.04 Aligned_cols=47 Identities=36% Similarity=0.915 Sum_probs=40.5
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLH 184 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~~ 184 (830)
..|.||+..+ +.+.||+||+|..+||+.|+++ ..+|+|.|+|..|..
T Consensus 59 ~~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSE--NDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCT--TTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccC--CCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 3699998864 4689999999999999999995 458999999999963
No 82
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.04 E-value=2.1e-06 Score=75.76 Aligned_cols=48 Identities=29% Similarity=0.829 Sum_probs=40.7
Q ss_pred CCcccccccCCCcCCCCceEEecC--cC-cccccccccccccCCCceeeeccCCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDM--CN-LAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~--C~-~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
+...| ||+... .+.||.||+ |. .-||..|.|+..+|.|.|+|..|...
T Consensus 35 e~~yC-iC~~~~---~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBC---CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCC---CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 45567 999874 268999999 66 58999999999999999999999865
No 83
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.00 E-value=2.7e-06 Score=78.35 Aligned_cols=48 Identities=33% Similarity=0.964 Sum_probs=40.1
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccc--cccCCCceeeeccCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLH 184 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi--~~ipeg~W~C~~C~~ 184 (830)
..|.||+... .+.+.||+||.|..+||..|+++ ..+|+|.|+|..|+.
T Consensus 62 ~~C~vC~~~~-~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQG-KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCC-CTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcC-CCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3799999752 24578999999999999999965 458999999999973
No 84
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.98 E-value=2.6e-06 Score=87.07 Aligned_cols=48 Identities=29% Similarity=0.893 Sum_probs=37.2
Q ss_pred CcccccccCCCcCCCCceEEecCcCccccccccccc--ccCCC-ceeeeccCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEG-QWLCRRCLH 184 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~--~ipeg-~W~C~~C~~ 184 (830)
+..|.+|+..+ +.+.||.||+|..+||..|++++ .+|+| .|+|..|..
T Consensus 174 ~c~C~vC~~~~--~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCC--C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCC--CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 44799998764 46899999999999999999965 47999 999999974
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.92 E-value=4.3e-06 Score=76.78 Aligned_cols=46 Identities=28% Similarity=0.772 Sum_probs=39.4
Q ss_pred ccccccCCCcCCCCceEEecCcCccccccccccc--ccCCCceeeeccCC
Q psy2279 137 VCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLH 184 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~--~ipeg~W~C~~C~~ 184 (830)
.|.||+... +.+.||.||.|..+||..|++++ .+|+|.|+|..|..
T Consensus 56 ~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSG--EDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCS--CCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccC--CCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 688898764 34789999999999999999954 47999999999974
No 86
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.83 E-value=1.1e-05 Score=72.54 Aligned_cols=49 Identities=33% Similarity=0.855 Sum_probs=38.7
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccccc--cCCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~--ipeg~W~C~~C~~ 184 (830)
++|.+-+||+..+ +.+.||.||.|+..||..|+|++. +| +.|+|..|..
T Consensus 25 ~~d~vrCiC~~~~--~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~ 75 (98)
T 2lv9_A 25 GTDVTRCICGFTH--DDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQP 75 (98)
T ss_dssp CCCBCCCTTSCCS--CSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSS
T ss_pred CCCCEEeECCCcc--CCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcC
Confidence 3444444998764 457899999999999999999965 45 4799999974
No 87
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=6.5e-06 Score=69.22 Aligned_cols=48 Identities=29% Similarity=0.725 Sum_probs=40.2
Q ss_pred CCCcccccccCCCcCCCCceEEecCcC---cccccccccccccCCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCN---LAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~---~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
++..+| +|+..+ .+.||.||+|+ .-||..|.|+...|.+.|+|..|..
T Consensus 4 ~~~~yC-~C~~~~---~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 4 GSSGYC-ICNQVS---YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTA 54 (70)
T ss_dssp SCCCCS-TTSCCC---CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCeEE-EcCCCC---CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCc
Confidence 345566 799873 35899999986 7899999999999999999999974
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.43 E-value=4.8e-05 Score=72.45 Aligned_cols=47 Identities=26% Similarity=0.660 Sum_probs=41.2
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccc---------cCCCceeeeccCCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY---------IPEGQWLCRRCLHT 185 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~---------ipeg~W~C~~C~~~ 185 (830)
.+..|.||.++ +.|+.||.|..+||..|..++. .|+|.|.|..|...
T Consensus 62 ~~d~C~vC~~G-----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC-----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC-----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 46899999987 8899999999999999998654 38999999999854
No 89
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.24 E-value=0.00015 Score=59.61 Aligned_cols=52 Identities=19% Similarity=0.569 Sum_probs=42.5
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccccccC---CCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIP---EGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ip---eg~W~C~~C~~~ 185 (830)
+++.+|.+|+.... +...||.||.|..=||..|.|+...+ .+.|+|..|...
T Consensus 4 ~e~~~C~~C~~~~~-~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYA-ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCC-SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccC-CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 56789999998642 34789999999999999999997643 368999999754
No 90
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.23 E-value=0.00014 Score=60.65 Aligned_cols=50 Identities=16% Similarity=0.513 Sum_probs=39.9
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccccccc-CCCceeeeccCCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI-PEGQWLCRRCLHT 185 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i-peg~W~C~~C~~~ 185 (830)
.+...| ||+..+ ++..||.||.|..=||..|.|+..- ..+.|+|..|..+
T Consensus 17 ~~~~~C-iC~~~~--~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPF--AGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCC--TTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcC--CCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 345667 999864 3567999999999999999999762 2368999999754
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.07 E-value=0.00012 Score=60.45 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=40.1
Q ss_pred CCCcccccccCCCcCCCCceEEec-CcCcccccccccccc--------cCCCceeeeccC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCD-MCNLAVHQDCYGVPY--------IPEGQWLCRRCL 183 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd-~C~~~vHq~CyGi~~--------ipeg~W~C~~C~ 183 (830)
++...|.+|..+.. ++..+|.|| +|..=||..|.|+.. -|.+.|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~-~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVN-DDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCC-TTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccC-CCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34678999998742 346899999 999999999999975 277899999995
No 92
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.03 E-value=0.00023 Score=59.35 Aligned_cols=48 Identities=23% Similarity=0.624 Sum_probs=37.0
Q ss_pred CCcccccccCCCcCCCCceEEecC--cCcccccccccccccCC------CceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDM--CNLAVHQDCYGVPYIPE------GQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~--C~~~vHq~CyGi~~ipe------g~W~C~~C~~ 184 (830)
+...| ||+..+ +.+.||.||+ |+.=+|..|+|+...+. ..|+|..|+.
T Consensus 9 ~~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34556 898753 3578999995 99999999999975432 3699999974
No 93
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.01 E-value=0.00025 Score=60.84 Aligned_cols=49 Identities=22% Similarity=0.633 Sum_probs=40.4
Q ss_pred CCcccccccCCCcCCCCceEEec--CcCcccccccccccccCC-------CceeeeccCCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCD--MCNLAVHQDCYGVPYIPE-------GQWLCRRCLHT 185 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~CyGi~~ipe-------g~W~C~~C~~~ 185 (830)
+...| ||+..+ +.+.||.|| .|..=+|..|+|+...+. +.|+|..|...
T Consensus 15 ~~~~C-iC~~~~--~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCC--CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcC--CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44667 999984 457999999 999999999999987552 58999999854
No 94
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.00 E-value=0.00016 Score=67.64 Aligned_cols=47 Identities=28% Similarity=0.702 Sum_probs=40.5
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccccc-------cc--CCCceeeeccCCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP-------YI--PEGQWLCRRCLHT 185 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~-------~i--peg~W~C~~C~~~ 185 (830)
.+..|.||.++ ++++.||.|..+||..|...+ .+ |++.|.|..|...
T Consensus 56 ~~~~C~vC~dG-----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC-----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC-----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 35789999987 889999999999999999864 34 7899999999754
No 95
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.89 E-value=0.0004 Score=58.59 Aligned_cols=49 Identities=27% Similarity=0.659 Sum_probs=38.4
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccccccc--CCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i--peg~W~C~~C~~ 184 (830)
+...| +|+.... ++..||.||.|..=+|..|.|+... ..+.|+|..|..
T Consensus 15 ~~~~C-~C~~~~~-~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDD-DGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSC-CSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccC-CCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34578 8988642 2347999999999999999999752 247899999974
No 96
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.74 E-value=0.00056 Score=53.88 Aligned_cols=47 Identities=19% Similarity=0.565 Sum_probs=37.6
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccccccC-CCceeeeccCC
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIP-EGQWLCRRCLH 184 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ip-eg~W~C~~C~~ 184 (830)
.+=++|+... +++.||.||+|+.=+|..|.|+..-+ .+.|+|..|..
T Consensus 4 ~~~C~C~~~~--~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPF--AGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBC--TTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CeEEEeCCcC--CCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 4445898753 46799999999999999999997632 36899999974
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.65 E-value=0.00053 Score=58.41 Aligned_cols=52 Identities=27% Similarity=0.728 Sum_probs=40.6
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccccccc-------CCCceeeeccCC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI-------PEGQWLCRRCLH 184 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i-------peg~W~C~~C~~ 184 (830)
.+|++.+-++|+.... +..||.||.|..=||..|.|+... ....|+|..|..
T Consensus 11 ~~d~~~~~C~C~~~~~--~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 11 VYDPNALYCICRQPHN--NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp SCCTTCCCSTTCCCCC--SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ccCCCCCEEECCCccC--CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3444445449998753 468999999999999999999764 257899999974
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.63 E-value=0.00029 Score=69.66 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=40.2
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccccccc---CCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI---PEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i---peg~W~C~~C~~ 184 (830)
++...| +|+... ++++.+|.||.|..-||..|.|+... ..+.|+|..|..
T Consensus 6 ~~~~~C-~C~~~~-~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPE-DESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEEC-CTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCC-CCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456788 999863 23567999999999999999998653 357899999984
No 99
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.61 E-value=0.00064 Score=53.56 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=37.0
Q ss_pred ccccccCCCcCCCCceEEec-CcCcccccccccccccC--CCceeeeccC
Q psy2279 137 VCCICNDGECQNSNVILFCD-MCNLAVHQDCYGVPYIP--EGQWLCRRCL 183 (830)
Q Consensus 137 ~C~VC~~~e~~~~n~iv~Cd-~C~~~vHq~CyGi~~ip--eg~W~C~~C~ 183 (830)
.|.+|..+.. ++..+|.|| .|..=||..|.|+...+ .+.|+|..|.
T Consensus 4 ~cc~C~~p~~-~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-DKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCC-TTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccC-CCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889988753 356799999 89999999999997642 3789999984
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.60 E-value=0.0011 Score=57.01 Aligned_cols=53 Identities=19% Similarity=0.476 Sum_probs=40.6
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccccccC---CCceeeeccCCC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIP---EGQWLCRRCLHT 185 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ip---eg~W~C~~C~~~ 185 (830)
.+...+.++|+.... +...||.||.|..=||..|.|+...+ .+.|+|..|...
T Consensus 8 ~~~~~~~C~C~~~~d-~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 8 MALVPVYCLCRQPYN-VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCCSTTSCSCC-SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccCCccEEEcCCccC-CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 334444449998742 35789999999999999999987642 368999999864
No 101
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.48 E-value=0.001 Score=60.38 Aligned_cols=50 Identities=24% Similarity=0.649 Sum_probs=41.3
Q ss_pred CcccccccCCCcCCCCceEEec-CcCcccccccccccc--------cCCCceeeeccCCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCD-MCNLAVHQDCYGVPY--------IPEGQWLCRRCLHT 185 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd-~C~~~vHq~CyGi~~--------ipeg~W~C~~C~~~ 185 (830)
...|.+|..... +.+.++.|| .|..=||..|.|+.. .|++.|+|..|...
T Consensus 3 ~~~C~iC~~p~~-~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVN-DDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCC-TTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccC-CCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 467999998743 346799998 999999999999975 36789999999854
No 102
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.16 E-value=0.0013 Score=55.84 Aligned_cols=51 Identities=24% Similarity=0.533 Sum_probs=39.8
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccccccCC---CceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPE---GQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipe---g~W~C~~C~~ 184 (830)
+...+-+||+... +.+..||.||.|..=||..|.|+...+. +.|+|..|..
T Consensus 7 ~~~~~yCiC~~~~-~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 7 ATVPVYCVCRLPY-DVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCCCEETTTTEEC-CTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CCCeeEEECCCcC-CCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 4455666998753 2357899999999999999999986532 5799999974
No 103
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.22 E-value=0.0052 Score=52.44 Aligned_cols=51 Identities=20% Similarity=0.558 Sum_probs=41.2
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccccc--------------cCCCceeeeccCC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--------------IPEGQWLCRRCLH 184 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~--------------ipeg~W~C~~C~~ 184 (830)
.+..|..|.||...+ .+.++-|.-|+..||-.|+-... .+++.|.|..|.+
T Consensus 11 ~~~~D~~C~VC~~~t---~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 11 PVVNDEMCDVCEVWT---AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCSCCCTTTCCCC---SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCCcccCcccccc---ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 455799999999764 58899999999999999986431 2567799999975
No 104
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.03 E-value=0.016 Score=57.64 Aligned_cols=50 Identities=22% Similarity=0.619 Sum_probs=37.8
Q ss_pred cccccccCCCcCC--CCceEEecCcCcccccccccccc--------cCC-CceeeeccCCC
Q psy2279 136 AVCCICNDGECQN--SNVILFCDMCNLAVHQDCYGVPY--------IPE-GQWLCRRCLHT 185 (830)
Q Consensus 136 ~~C~VC~~~e~~~--~n~iv~Cd~C~~~vHq~CyGi~~--------ipe-g~W~C~~C~~~ 185 (830)
..|.||...-.++ ...||.||.|..=||..|-|+.. .|+ ..|+|..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4699998753322 23599999999999999999864 233 37999999854
No 105
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=93.60 E-value=0.017 Score=52.89 Aligned_cols=25 Identities=40% Similarity=0.860 Sum_probs=22.6
Q ss_pred CCCccchhhhhccCCCCCceEeeCC
Q psy2279 715 TFEQLQLVWAKCRGYPWYPALIINP 739 (830)
Q Consensus 715 ~~~~~~~v~ak~~g~p~~p~~i~~~ 739 (830)
.||-|-|||.|..-||.|||+|-.-
T Consensus 4 ~~e~GmlVW~K~q~yPfWPAVVKSV 28 (134)
T 3pmi_A 4 SFEVGMLVWHKHKKYPFWPAVVKSV 28 (134)
T ss_dssp CCCTTCEEEECCTTSCCEEEEEEEE
T ss_pred ccccceEEEEEeccCCCcchheeee
Confidence 5789999999999999999999763
No 106
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.58 E-value=0.045 Score=46.67 Aligned_cols=34 Identities=32% Similarity=0.681 Sum_probs=29.3
Q ss_pred ccCcccccccCC-CCcceeeecCCCCCcccchhhhh
Q psy2279 243 RWKLTCYVCKQR-GVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 243 r~~l~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.+...| +|++. ..|.+|||....|..+||..|..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 456788 89996 56999999988899999999984
No 107
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.49 E-value=0.016 Score=66.31 Aligned_cols=50 Identities=24% Similarity=0.595 Sum_probs=39.5
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccCC---CceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPE---GQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipe---g~W~C~~C~~ 184 (830)
.+...|+|+... +.+..||.||.|..=+|..|.|+...+. +.|+|..|..
T Consensus 35 ~~~~yC~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 35 PPPVYCVCRQPY-DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCCEETTTTEEC-CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCeEEeCCCcC-CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 344556998763 2357899999999999999999987542 6799999974
No 108
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.18 E-value=0.011 Score=66.63 Aligned_cols=50 Identities=26% Similarity=0.582 Sum_probs=40.0
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccC--C-CceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIP--E-GQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ip--e-g~W~C~~C~~ 184 (830)
...+.|+|+... +.++.||.||.|..=+|..|.|+...+ . +.|+|..|..
T Consensus 3 ~~~~yCiC~~~~-d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 3 SVPVYCLCRLPY-DVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp CCCEETTTTEEC-CTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred CCCeEEeCCCcC-CCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 345678998764 236889999999999999999997643 2 6799999974
No 109
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=93.15 E-value=0.043 Score=62.51 Aligned_cols=36 Identities=22% Similarity=0.533 Sum_probs=30.4
Q ss_pred CCceEEecCcCcccccccccccccC---CCceeeeccCC
Q psy2279 149 SNVILFCDMCNLAVHQDCYGVPYIP---EGQWLCRRCLH 184 (830)
Q Consensus 149 ~n~iv~Cd~C~~~vHq~CyGi~~ip---eg~W~C~~C~~ 184 (830)
+..+|.||+|..=||..|.|+..-. -+.|+|..|..
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 4579999999999999999997642 26899999974
No 110
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=92.46 E-value=0.047 Score=44.46 Aligned_cols=32 Identities=31% Similarity=0.781 Sum_probs=27.1
Q ss_pred CcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
...| +|++...|.+|+|....|. .+||..|..
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg 43 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS 43 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEecccCC
Confidence 4567 8998656899999987788 999999986
No 111
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.20 E-value=0.11 Score=45.49 Aligned_cols=33 Identities=30% Similarity=0.720 Sum_probs=27.8
Q ss_pred cCcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
....| +|++...|.+|+|...+|. .+||..|..
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC
Confidence 44677 9998756899999987798 799999985
No 112
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=90.95 E-value=0.085 Score=42.50 Aligned_cols=32 Identities=31% Similarity=0.795 Sum_probs=27.0
Q ss_pred CcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
...| +|++...|.+|+|...+|. .+||..|..
T Consensus 9 ~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 9 PTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred CcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC
Confidence 3567 8998656899999987898 799999986
No 113
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=90.80 E-value=0.15 Score=42.55 Aligned_cols=33 Identities=30% Similarity=0.720 Sum_probs=27.6
Q ss_pred cCcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
....| +|++...|.+|+|...+|. .+||..|..
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC
Confidence 34678 7998756999999987798 799999985
No 114
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.30 E-value=0.17 Score=43.14 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=26.6
Q ss_pred cccCcccccccCCC--CcceeeecCCCCCcccchhhhh
Q psy2279 242 ARWKLTCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 242 ~r~~l~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..+...| +|++.. .|.+|||. .|..+||..|..
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvg 43 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVG 43 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHT
T ss_pred cCCccEE-EcCCccCCCCceEEcC--CCCCcEEeeecC
Confidence 3445677 899863 58999999 599999999984
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=89.81 E-value=0.13 Score=42.65 Aligned_cols=31 Identities=29% Similarity=0.740 Sum_probs=25.5
Q ss_pred CcccccccCC-CCcceeeecCCCCCcccchhhh
Q psy2279 245 KLTCYVCKQR-GVGACIQCHKTNCYAAFHVTCA 276 (830)
Q Consensus 245 ~l~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA 276 (830)
...| +|++. ..|.+|+|....|..+||..|.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 3567 79775 3589999987689999999997
No 116
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=89.60 E-value=0.13 Score=41.55 Aligned_cols=32 Identities=31% Similarity=0.787 Sum_probs=26.8
Q ss_pred CcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
...| +|++...|.+|+|...+|. .+||..|..
T Consensus 10 ~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 10 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred CCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC
Confidence 3567 8998656999999977788 899999986
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=89.58 E-value=0.14 Score=46.26 Aligned_cols=32 Identities=28% Similarity=0.783 Sum_probs=27.6
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
....|.+|+. .|-.|.|....|..+||..|..
T Consensus 14 ~~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 14 HEDYCFQCGD--GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp SCSSCTTTCC--CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCcCCC--CCcEeEECCCCCCcccccccCc
Confidence 3457999996 5899999988899999999985
No 118
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=89.39 E-value=0.17 Score=44.33 Aligned_cols=34 Identities=24% Similarity=0.684 Sum_probs=27.9
Q ss_pred ccCcccccccCCCCcceeeecCCCCC-cccchhhhh
Q psy2279 243 RWKLTCYVCKQRGVGACIQCHKTNCY-AAFHVTCAQ 277 (830)
Q Consensus 243 r~~l~C~iC~~~g~GacIqC~~~~C~-~~fHvtCA~ 277 (830)
.....| +|++...|.+|+|...+|. .+||..|..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC
Confidence 345678 8998656899999987777 799999984
No 119
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.37 E-value=0.16 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=26.1
Q ss_pred CcccccccCCC--CcceeeecCCCCCcccchhhhh
Q psy2279 245 KLTCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~ 277 (830)
...|.+|++.. .+.+|||. .|..+||..|+.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvg 38 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD--LCEMWFHGKCVK 38 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTT
T ss_pred CCCCCCCCCccCCCCCEEEcc--CCCCCCCccccC
Confidence 45799999863 47899999 699999999984
No 120
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.22 E-value=0.22 Score=42.00 Aligned_cols=31 Identities=32% Similarity=0.648 Sum_probs=25.4
Q ss_pred cCcccccccCCCC-cceeeecCCCCCcccchhhhh
Q psy2279 244 WKLTCYVCKQRGV-GACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 244 ~~l~C~iC~~~g~-GacIqC~~~~C~~~fHvtCA~ 277 (830)
+.+.| +|++... +.+|||. .|..+||..|..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvg 46 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVG 46 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHS
T ss_pred CCCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEc
Confidence 35678 8998743 5899998 599999999984
No 121
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=88.29 E-value=0.17 Score=43.67 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=44.3
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|..||.|.||=..-=||||.|..=. +...|.|+|+| .+-.=|....|+|+
T Consensus 20 ~~f~vGd~VlArW~D~~yYPAkI~sV~--------------------------~~~~YtV~F~D--G~~etvk~~~IKp~ 71 (85)
T 3qii_A 20 SEFQINEQVLACWSDCRFYPAKVTAVN--------------------------KDGTYTVKFYD--GVVQTVKHIHVKAF 71 (85)
T ss_dssp -CCCTTCEEEEECTTSCEEEEEEEEEC--------------------------TTSEEEEEETT--SCEEEEEGGGEEEC
T ss_pred cccccCCEEEEEeCCCCEeeEEEEEEC--------------------------CCCeEEEEEeC--CCeEEecHHHcccC
Confidence 678999999999988889999998641 12359999998 78888999999999
Q ss_pred CCCh
Q psy2279 794 GITD 797 (830)
Q Consensus 794 ~~~~ 797 (830)
..+.
T Consensus 72 ~~~~ 75 (85)
T 3qii_A 72 SKDQ 75 (85)
T ss_dssp C---
T ss_pred Chhh
Confidence 7655
No 122
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.26 E-value=0.18 Score=42.14 Aligned_cols=34 Identities=26% Similarity=0.753 Sum_probs=27.1
Q ss_pred cccCcccccccCCC-Cc-ceeeecCCCCCcccchhhhhh
Q psy2279 242 ARWKLTCYVCKQRG-VG-ACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 242 ~r~~l~C~iC~~~g-~G-acIqC~~~~C~~~fHvtCA~~ 278 (830)
..+.+.| +|++.. .| .+|||. .|..+||..|+..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGI 48 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTC
T ss_pred CCcceEe-eCCCccCCCCcEEECC--CCCCccCCeeecc
Confidence 4566789 699862 35 799999 5999999999853
No 123
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.91 E-value=0.25 Score=42.19 Aligned_cols=38 Identities=24% Similarity=0.556 Sum_probs=32.8
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhhcCcccc
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMN 284 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~aG~~~~ 284 (830)
.-.|.+|++...+..+.|. -|.+.||..|.++.|+.-.
T Consensus 15 D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~ 52 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQG 52 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCC
T ss_pred CcccCccccccccceeccc--cccccccHhhccccccccc
Confidence 3589999998778999997 4999999999999888744
No 124
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=87.87 E-value=0.74 Score=41.81 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=51.3
Q ss_pred ccchhhhhccC--CCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCCC
Q psy2279 718 QLQLVWAKCRG--YPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGI 795 (830)
Q Consensus 718 ~~~~v~ak~~g--~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~~ 795 (830)
.|.+|.-.+.. =-||||+|+.|.- +-.+.| +..-+||+=| ...-+.=+|++.+..|+.
T Consensus 13 lGkVV~V~~~~kk~~WfPALVVsPs~-----~d~v~v--------------kKd~~LVRSF-kDgKf~sV~rkdv~e~~~ 72 (117)
T 2yrv_A 13 LGKVVSVVSATERTEWYPALVISPSC-----NDDITV--------------KKDQCLVRSF-IDSKFYSIARKDIKEVDI 72 (117)
T ss_dssp TTSEEEEECSSCSSCEEEEEEECCSS-----CSSCCC--------------CTTCEEEEES-SSCCEEEECTTTEECCCS
T ss_pred cCcEEEEecCCCCCceeeeEEECCCC-----CCCeee--------------ccceEEEEee-ccCeEEEEEhHhhhhccc
Confidence 44555444321 2499999999944 112222 2335999999 334588899999998887
Q ss_pred ChhhhhhhhcccCChhHHHHHHHHHHHHHhhcC
Q psy2279 796 TDELDQIKLMESRKPADRKAVKKAYQEALVHKT 828 (830)
Q Consensus 796 ~~~~d~~~~~~~~~~~~rk~~~~a~~~a~~~~~ 828 (830)
+... |+ --+.+.|+++|+.++.
T Consensus 73 ~~~~---------k~--d~slK~a~d~A~~fl~ 94 (117)
T 2yrv_A 73 LNLP---------ES--ELSTKPGLQKASIFLK 94 (117)
T ss_dssp TTSC---------HH--HHHHCHHHHHHHHHHH
T ss_pred cccc---------cC--chhHHHHHHHHHHHHh
Confidence 6631 22 2467788888887764
No 125
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=87.56 E-value=0.29 Score=44.62 Aligned_cols=72 Identities=21% Similarity=0.416 Sum_probs=44.8
Q ss_pred cccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCCCC------CCCcccccCCCCC---------C
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTP------SRAVDCVLCPNNG---------G 200 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~~------~~~~~C~lC~~~g---------G 200 (830)
.+|.+|+.. .|+.|...+|..|+|.+ .|.|..|.... .....|.+|+.-+ .
T Consensus 8 ~~C~~C~~~---------~C~~C~~c~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~ 73 (117)
T 4bbq_A 8 RKCKACVQG---------ECGVCHYCRDMKKFGGP-----GRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEK 73 (117)
T ss_dssp SCSHHHHSC---------CCSCSHHHHHSGGGTSC-----CCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGG
T ss_pred CcCcCcCCc---------CCCCCCCCcCCcccCCC-----CccccchhheeeccccccccccccccCcccccccccccCc
Confidence 357778765 29999999999998754 37887775421 1122344443322 1
Q ss_pred Ccccc-cCCCcccccccccCCc
Q psy2279 201 AFKLT-DRGAWAHVVCALWIPE 221 (830)
Q Consensus 201 a~k~t-~~~~W~Hv~Calw~pe 221 (830)
.|... ..+.|+|..|.-...+
T Consensus 74 ~m~~C~~C~~~~H~~C~~~~~~ 95 (117)
T 4bbq_A 74 KLMECCICNEIVHPGCLQMDGE 95 (117)
T ss_dssp SCEEETTTCCEECGGGCCSCCC
T ss_pred ceEEeeecCCeEECCCCCCCcc
Confidence 23333 3568999999865444
No 126
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=87.26 E-value=0.64 Score=44.72 Aligned_cols=50 Identities=28% Similarity=0.467 Sum_probs=40.9
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
.+..|.+|...-.--.|.=..|..|...|-+.|- +..-.++.|+|..|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5789999998755556788999999999999995 4444678899999974
No 127
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.20 E-value=0.28 Score=41.13 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=25.7
Q ss_pred CcccccccCCCCc-ceeeecCCCCCcccchhhhh
Q psy2279 245 KLTCYVCKQRGVG-ACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g~G-acIqC~~~~C~~~fHvtCA~ 277 (830)
...|.+|++...| .+|+|. +|..+||..|..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~ 49 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVG 49 (75)
T ss_dssp EECBTTTTBCCSSCCEEECS--SSSSEEEHHHHT
T ss_pred CcCCCCCCCCCCCCCEEEcC--CCCcccccccCC
Confidence 3579999986445 699999 599999999985
No 128
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=86.73 E-value=0.27 Score=40.70 Aligned_cols=30 Identities=33% Similarity=0.855 Sum_probs=24.6
Q ss_pred CcccccccCCCCc-ceeeecCCCCCcccchhhhh
Q psy2279 245 KLTCYVCKQRGVG-ACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g~G-acIqC~~~~C~~~fHvtCA~ 277 (830)
.+.| +|++...| .+|||.. |..+||..|..
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~--C~~WfH~~Cvg 49 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNE--CHTWIHLSCAK 49 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTT--TCCEEETTTTT
T ss_pred ceEe-ECCCcCCCCCEEECCC--CCccccccccC
Confidence 4578 99987444 7999984 99999999985
No 129
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.35 E-value=0.51 Score=39.26 Aligned_cols=31 Identities=29% Similarity=0.773 Sum_probs=25.6
Q ss_pred cccccccCCCCcceeeecCCCC-Ccccchhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNC-YAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C-~~~fHvtCA~ 277 (830)
+.| +|++...|.+|+|...+| ..+||..|..
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvg 38 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVG 38 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHT
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCcccccc
Confidence 467 598866789999998677 4899999986
No 130
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.04 E-value=0.46 Score=37.02 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=24.4
Q ss_pred ccccccCCC--CcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|.+|++.. .+.+|||.. .|..+||..|+.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccC
Confidence 477898862 357999996 799999999984
No 131
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=83.86 E-value=0.41 Score=39.48 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=43.9
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
+.|..||.|.|+=..-=||||.|..=. ++..|.|.|+| .+-.=|....|+|+
T Consensus 5 ~~~~vGd~vmArW~D~~yYpA~I~si~--------------------------~~~~Y~V~F~d--G~~etvk~~~ikp~ 56 (67)
T 3p8d_A 5 SEFQINEQVLACWSDCRFYPAKVTAVN--------------------------KDGTYTVKFYD--GVVQTVKHIHVKAF 56 (67)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEC--------------------------TTSEEEEEETT--SCEEEEEGGGEEEC
T ss_pred cccccCCEEEEEcCCCCEeeEEEEEEC--------------------------CCCeEEEEEeC--CceEEEeHHHcccC
Confidence 568899999999988889999998641 12469999998 67788888889988
Q ss_pred CCCh
Q psy2279 794 GITD 797 (830)
Q Consensus 794 ~~~~ 797 (830)
..+.
T Consensus 57 ~~~~ 60 (67)
T 3p8d_A 57 SKDQ 60 (67)
T ss_dssp C---
T ss_pred Cccc
Confidence 7654
No 132
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.22 E-value=0.63 Score=37.31 Aligned_cols=30 Identities=27% Similarity=0.831 Sum_probs=25.8
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
...|.+|++ .|..|.|. .|..+||..|...
T Consensus 5 ~~~C~vC~~--~g~ll~Cd--~C~~~fH~~Cl~p 34 (60)
T 2puy_A 5 EDFCSVCRK--SGQLLMCD--TCSRVYHLDCLDP 34 (60)
T ss_dssp CSSCTTTCC--CSSCEECS--SSSCEECGGGSSS
T ss_pred CCCCcCCCC--CCcEEEcC--CCCcCEECCcCCC
Confidence 457999998 48999998 6999999999863
No 133
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=83.18 E-value=0.45 Score=43.35 Aligned_cols=37 Identities=24% Similarity=0.680 Sum_probs=28.0
Q ss_pred CCceEEecCcCcccccccccccc--cC----CCceeeeccCCC
Q psy2279 149 SNVILFCDMCNLAVHQDCYGVPY--IP----EGQWLCRRCLHT 185 (830)
Q Consensus 149 ~n~iv~Cd~C~~~vHq~CyGi~~--ip----eg~W~C~~C~~~ 185 (830)
...|+.|+.|.-.||..|.++.. ++ .+.|.|..|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 34599999999999999999753 22 245999999753
No 134
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=83.69 E-value=0.24 Score=42.46 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccCC
Q psy2279 715 TFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLG 794 (830)
Q Consensus 715 ~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l~ 794 (830)
.|..||.|.||-..-=||||.|..-.. ...|.|+|.| ....=|+.+.|+||.
T Consensus 6 ~~kvGd~clAkwsDg~wY~A~I~~v~~--------------------------~~~y~V~F~D--Gn~E~V~~s~LrPl~ 57 (81)
T 2ldm_A 6 EFQINEQVLASWSDSRFYPAKVTAVNK--------------------------DGTYTVKFYD--GVVQTVKHIHVKAFS 57 (81)
Confidence 477899999998777899999987411 1248999998 788889999999996
Q ss_pred CChh
Q psy2279 795 ITDE 798 (830)
Q Consensus 795 ~~~~ 798 (830)
.+..
T Consensus 58 ~~~~ 61 (81)
T 2ldm_A 58 KDQN 61 (81)
Confidence 5543
No 135
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.94 E-value=0.57 Score=42.12 Aligned_cols=31 Identities=26% Similarity=0.672 Sum_probs=26.1
Q ss_pred cccccccCC--CCcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQR--GVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~--g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..|.+|++. ..|-.|+|. ..|..+||..|..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVg 36 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTG 36 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCC
Confidence 369999987 357899998 4799999999983
No 136
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.92 E-value=0.51 Score=41.87 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=23.5
Q ss_pred cccccccCCC-CcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQRG-VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g-~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..| +|++.. .|.+|+|. .|..+||..|..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd--~C~~w~H~~C~~ 58 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD--KCSVWQHIDCMG 58 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT--TTCBEEETTTTT
T ss_pred EEe-ECCCccCCCcEEEcC--CCCCcCcCcCCC
Confidence 356 788752 48999998 599999999984
No 137
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=82.89 E-value=0.49 Score=37.52 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=43.2
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
+.|..|+=|+|+..-==.||+-|+.-+. ....++|+|+|+ |=+|+.-+.|.++
T Consensus 2 ~~f~~GedVLarwsDG~fYlGtI~~V~~-------------------------~~~~clV~F~D~--s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 2 PRLWEGQDVLARWTDGLLYLGTIKKVDS-------------------------AREVCLVQFEDD--SQFLVLWKDISPA 54 (58)
T ss_dssp CSCCTTCEEEEECTTSCEEEEEEEEEET-------------------------TTTEEEEEETTS--CEEEEEGGGEEEC
T ss_pred CccccCCEEEEEecCCCEEeEEEEEEec-------------------------CCCEEEEEEcCC--CeEEEEhHHcccc
Confidence 4678899999999887899999997322 234799999997 5566777888877
Q ss_pred CCC
Q psy2279 794 GIT 796 (830)
Q Consensus 794 ~~~ 796 (830)
++.
T Consensus 55 ~~~ 57 (58)
T 4hcz_A 55 ALP 57 (58)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 138
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.82 E-value=0.62 Score=35.96 Aligned_cols=30 Identities=37% Similarity=0.937 Sum_probs=24.6
Q ss_pred ccccccCCC-CcceeeecCCCCCcccchhhhhh
Q psy2279 247 TCYVCKQRG-VGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 247 ~C~iC~~~g-~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
.|.+|++.+ .+..|.|. +|..+||..|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCC
Confidence 599999853 35789998 6999999999853
No 139
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.64 E-value=0.67 Score=37.38 Aligned_cols=31 Identities=35% Similarity=0.791 Sum_probs=26.5
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
....|.+|++ .|..|.|. .|..+||..|...
T Consensus 10 ~~~~C~vC~~--~g~ll~CD--~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQ--GGEIILCD--TCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSC--CSSEEECS--SSSCEEEHHHHCT
T ss_pred CCCCCccCCC--CCcEEECC--CCChhhhhhccCC
Confidence 3568999997 48999998 6999999999864
No 140
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.43 E-value=0.59 Score=38.42 Aligned_cols=28 Identities=36% Similarity=0.776 Sum_probs=24.1
Q ss_pred cccccccCCCCcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..|.+|++ .|..|.|. .|..+||..|..
T Consensus 13 ~~C~vC~~--~~~ll~Cd--~C~~~~H~~Cl~ 40 (66)
T 2lri_C 13 ARCGVCGD--GTDVLRCT--HCAAAFHWRCHF 40 (66)
T ss_dssp CCCTTTSC--CTTCEECS--SSCCEECHHHHC
T ss_pred CCcCCCCC--CCeEEECC--CCCCceecccCC
Confidence 46999987 48899998 599999999974
No 141
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=82.33 E-value=0.64 Score=38.08 Aligned_cols=30 Identities=37% Similarity=0.812 Sum_probs=25.7
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
....|.+|+. .|..|.|. .|..+||..|..
T Consensus 7 ~~~~C~vC~~--~g~ll~CD--~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 7 NEDECAVCRD--GGELICCD--GCPRAFHLACLS 36 (66)
T ss_dssp CCCSBSSSSC--CSSCEECS--SCCCEECTTTSS
T ss_pred CCCCCccCCC--CCCEEEcC--CCChhhcccccC
Confidence 3568999997 48999998 699999999975
No 142
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=82.19 E-value=0.66 Score=36.08 Aligned_cols=29 Identities=24% Similarity=0.626 Sum_probs=23.1
Q ss_pred ccccccCCCC-cceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQRGV-GACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~g~-GacIqC~~~~C~~~fHvtCA~ 277 (830)
.=.+|++... +.+|||. .|..+||..|..
T Consensus 5 ~~C~C~~~~~~~~MI~Cd--~C~~W~H~~Cvg 34 (52)
T 3o7a_A 5 VTCFCMKPFAGRPMIECN--ECHTWIHLSCAK 34 (52)
T ss_dssp BCSTTCCBCTTCCEEECT--TTCCEEETTTTT
T ss_pred eEEEeCCcCCCCCEEEcC--CCCccccccccC
Confidence 3347988633 5999998 499999999985
No 143
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=82.16 E-value=0.52 Score=39.63 Aligned_cols=30 Identities=30% Similarity=0.700 Sum_probs=24.1
Q ss_pred CcccccccCC--CCcceeeecCCCCCcccchhhhh
Q psy2279 245 KLTCYVCKQR--GVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~--g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.+.| +|++. +.+.+|||. .|..+||..|..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg 41 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECD--ACKDWFHGSCVG 41 (75)
T ss_dssp CEET-TTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred eeEE-ECCCcCCCCCCEEEcC--CCCCCEeccccc
Confidence 4455 89885 247999999 599999999994
No 144
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.30 E-value=0.66 Score=36.65 Aligned_cols=31 Identities=26% Similarity=0.795 Sum_probs=26.2
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
....|.+|++ .|..|.|. .|..+||..|...
T Consensus 8 ~~~~C~vC~~--~g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 8 HEDFCSVCRK--SGQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp SCCSCSSSCC--SSCCEECS--SSSCEECSSSSSS
T ss_pred CCCCCccCCC--CCeEEEcC--CCCcceECccCCC
Confidence 3467999998 38999998 6999999999863
No 145
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=81.06 E-value=0.67 Score=37.37 Aligned_cols=31 Identities=29% Similarity=0.768 Sum_probs=26.0
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
....|.+|++ .|..|.|. +|..+||..|...
T Consensus 8 ~~~~C~vC~~--~g~ll~Cd--~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKD--GGELLCCD--TCPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCC--CSSCBCCS--SSCCCBCSSSSSS
T ss_pred CCCcCCCCCC--CCCEEEcC--CCCHHHcccccCC
Confidence 4568999997 48899998 5999999999853
No 146
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=80.01 E-value=0.93 Score=37.10 Aligned_cols=31 Identities=26% Similarity=0.629 Sum_probs=25.2
Q ss_pred cccccccCCC--CcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..|.+|++.. ....|+|.. .|..+||..|..
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvg 41 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICTG 41 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHT
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhccC
Confidence 3699999862 346999994 899999999983
No 147
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=78.65 E-value=1.5 Score=35.92 Aligned_cols=54 Identities=31% Similarity=0.483 Sum_probs=45.0
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|..|+=|+||+.-==.|.+-|||-. ...+||+|.|+ |=+|+..++|+.|
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~---------------------------~~~ClV~FeD~--S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQT---------------------------SDQYLIRFDDQ--SEQWCEPDKLRKL 64 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEC---------------------------SSCEEEEETTC--CEEEECTTTEECS
T ss_pred cccccCCeEEEEecCCCEEEEEEEecC---------------------------CceEEEEecCC--cceeeeHHHHHhh
Confidence 678899999999987778999998842 34599999987 6778888999999
Q ss_pred CCC
Q psy2279 794 GIT 796 (830)
Q Consensus 794 ~~~ 796 (830)
|.+
T Consensus 65 ~~~ 67 (69)
T 2xk0_A 65 GGG 67 (69)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=78.44 E-value=1.7 Score=40.71 Aligned_cols=52 Identities=25% Similarity=0.592 Sum_probs=40.1
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccccccc--CCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i--peg~W~C~~C~~ 184 (830)
+.+..|.+|...-.--.|.=..|..|...|=+.|-+.... .+..|+|.-|..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4678999999876544566699999999999999664422 345799999974
No 149
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=77.20 E-value=2 Score=32.93 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=27.0
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.+++..|.||.+.-. +++..+....|+-.||..|..
T Consensus 2 ~~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~ 37 (55)
T 1iym_A 2 MDDGVECAVCLAELE-DGEEARFLPRCGHGFHAECVD 37 (55)
T ss_dssp CCCSCCCTTTCCCCC-TTSCCEECSSSCCEECTTHHH
T ss_pred CCCCCcCccCCcccc-CCCceEECCCCCCcccHHHHH
Confidence 467789999998643 334456666899999999974
No 150
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=76.86 E-value=2.3 Score=36.95 Aligned_cols=57 Identities=30% Similarity=0.388 Sum_probs=45.4
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCC--Cc
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRN--KL 790 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~--~~ 790 (830)
..|+.|.-|=|...--|||||.|+.-+ ..+..|+|.|-+-...| .|++.+ .|
T Consensus 18 ~~F~vGmkLEA~D~~~~~~~a~i~~v~-------------------------~~~~~v~VHfdGW~~~yDeWv~~dS~~I 72 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQKWYPSRIEKID-------------------------YEEGKMLVHFERWSHRYDEWIYWDSNRL 72 (88)
T ss_dssp CCCCSSCEEEEECTTSCEEEEEEEEEE-------------------------TTTTEEEEEESSSTTTEEEEEETTSCCE
T ss_pred CcCCCCCEEEEEcCCCCeeEEEEEEEe-------------------------ccCCEEEEEECCCCCcccEEeeCCCCcE
Confidence 578899988888876699999998531 12346999998888888 899966 79
Q ss_pred ccCCC
Q psy2279 791 EPLGI 795 (830)
Q Consensus 791 ~~l~~ 795 (830)
.|+|-
T Consensus 73 ~P~g~ 77 (88)
T 2eqm_A 73 RPLER 77 (88)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 99994
No 151
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.72 E-value=0.65 Score=39.59 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=23.5
Q ss_pred CCCCcccccccCCCcCCCCceEE---ecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILF---CDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~---Cd~C~~~vHq~CyG 168 (830)
..++..|.||++... +++.++. |.+..-.||+.|.-
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~l~~pC~C~Gs~h~fH~~Cl~ 50 (80)
T 2d8s_A 12 PSSQDICRICHCEGD-DESPLITPCHCTGSLHFVHQACLQ 50 (80)
T ss_dssp CTTSCCCSSSCCCCC-SSSCEECSSSCCSSSCCEETTHHH
T ss_pred CCCCCCCeEcCcccc-CCCeeEeccccCCcCCeeCHHHHH
Confidence 345678999997543 3345542 22334899999975
No 152
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.01 E-value=0.59 Score=40.36 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=40.6
Q ss_pred CCcccccccCC--CcCCCCceEEecCcCcccccccccccccCCCceeeeccCCC
Q psy2279 134 DEAVCCICNDG--ECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 134 ~d~~C~VC~~~--e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
...+|.||++. -..+++..|-|..|+..|-..||-.. +-+|.-.|.+|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE-rkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH-HHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH-HhccCccccccCCc
Confidence 34799999985 33577889999999999999999643 46788888888743
No 153
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.37 E-value=1.3 Score=42.68 Aligned_cols=46 Identities=30% Similarity=0.767 Sum_probs=37.0
Q ss_pred CcccccccCCCcCCCCceEEec--CcCcccccccccccc--------cCCCceeeeccCCC
Q psy2279 135 EAVCCICNDGECQNSNVILFCD--MCNLAVHQDCYGVPY--------IPEGQWLCRRCLHT 185 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~CyGi~~--------ipeg~W~C~~C~~~ 185 (830)
+..|.+|.++ +.++.|| .|..+|=..|..... +.+..|.|-.|...
T Consensus 79 ~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 5689999986 8999999 799999999975432 35578999888743
No 154
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=71.49 E-value=2.4 Score=43.71 Aligned_cols=65 Identities=14% Similarity=0.272 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhccCCCC---------------CCC-CCCcccccccCCCcCCCCceEEecCcCccccc
Q psy2279 101 PPLAIDTFELLMDRLEKECQFQMSHTQSQ---------------DII-DDEAVCCICNDGECQNSNVILFCDMCNLAVHQ 164 (830)
Q Consensus 101 ~~~s~~~fE~~md~LEkE~~~~~~~~~~~---------------~~~-~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq 164 (830)
..++....|.++++|..+.|+... .+.- ..+ +.-..|.+|.+--. .=+.|..|+..+|.
T Consensus 131 k~l~~~eae~lL~~lv~~gWl~~~-~g~~~l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~----~g~~C~~C~~~~H~ 205 (238)
T 3nw0_A 131 KKMRKKEAEQVLQKFVQNKWLIEK-EGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLI----QGQSCETCGIRMHL 205 (238)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCS----SCEECSSSCCEECH
T ss_pred CCCCHHHHHHHHHHHHHhcchhhh-CCEEEecCccHHHHHHHHHHhcCCCCCcCcchhhHHh----CCcccCccChHHHH
Confidence 468899999999999988777653 2210 112 23467999998533 34899999999999
Q ss_pred cccccc
Q psy2279 165 DCYGVP 170 (830)
Q Consensus 165 ~CyGi~ 170 (830)
.|+.--
T Consensus 206 ~C~~~~ 211 (238)
T 3nw0_A 206 PCVAKY 211 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 155
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=73.18 E-value=0.89 Score=39.29 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=47.1
Q ss_pred CCCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCCcc
Q psy2279 713 SHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNKLE 791 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~~~ 791 (830)
.+.|+.|+.|++...| =||+|.|++-+. ..++..|+|.|-+=.+.| -|||.+.|.
T Consensus 10 ~~~~~~Gekv~~~~~~-~~y~AkIl~i~~-----------------------~~~~~~YyVHY~GwNkR~DEWV~~~Rl~ 65 (85)
T 2lrq_A 10 NTLFVDGERVLCFHGP-LIYEAKVLKTKP-----------------------DATPVEYYIHYAGWSKNWDEWVPENRVL 65 (85)
Confidence 3678899999999866 579999998533 123456999999877778 899999988
Q ss_pred cCCCCh
Q psy2279 792 PLGITD 797 (830)
Q Consensus 792 ~l~~~~ 797 (830)
.++...
T Consensus 66 k~t~en 71 (85)
T 2lrq_A 66 KYNDDN 71 (85)
Confidence 877443
No 156
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=70.34 E-value=1.2 Score=41.10 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=52.3
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCC-Ccc---cCCCCCCCC-------cHHHHhh----hcCCCCCeEEEEEcCC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPL-GYI---HNGVPIPSP-------PEDVLAL----ANNYTEPVYLVLFFDT 778 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~-g~~---h~~~~~~~p-------p~~~~~~----~~~~~~~~~~v~ffd~ 778 (830)
+.|+.|+.|.|-=.|-| |.|.|++=.+|. .++ ++|.+-++- +..+... ....+...|+|.|.+=
T Consensus 6 p~f~~gE~VlcfHg~~~-YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GW 84 (130)
T 3e9g_A 6 QEFALGGRCLAFHGPLM-YEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFIHYQGW 84 (130)
T ss_dssp -CCCTTCEEEEEETTEE-EEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEEEEETTS
T ss_pred ccccCCCEEEEEeCCcc-eeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEEEEeCCC
Confidence 68899999999888774 999998876666 443 555332111 0000000 0124566899999999
Q ss_pred CCCc-ccccCCCcccCCCC
Q psy2279 779 KRTW-QWLPRNKLEPLGIT 796 (830)
Q Consensus 779 ~~~~-~w~~~~~~~~l~~~ 796 (830)
..+| .|+|.+.|..++..
T Consensus 85 n~~WDEWV~e~rvlk~~ee 103 (130)
T 3e9g_A 85 KSSWDEWVGYDRIRAYNEE 103 (130)
T ss_dssp CGGGCEEEETTTEECSSHH
T ss_pred CCChhhccCHhhhhccCHH
Confidence 9999 99999998887643
No 157
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.92 E-value=1.9 Score=35.00 Aligned_cols=32 Identities=19% Similarity=0.601 Sum_probs=25.9
Q ss_pred CcccccccCCC---CcceeeecCCCCCcccchhhhhh
Q psy2279 245 KLTCYVCKQRG---VGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 245 ~l~C~iC~~~g---~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
...|.+|+... .|..|.|. +|..+||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCC
Confidence 35799998741 28999998 6999999999754
No 158
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=68.90 E-value=1.7 Score=37.73 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhcc---CCC---C--CCCCCCcccccccCCCcCCCCceEEecCcCccccccccccc
Q psy2279 101 PPLAIDTFELLMDRLEKECQFQMSH---TQS---Q--DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP 170 (830)
Q Consensus 101 ~~~s~~~fE~~md~LEkE~~~~~~~---~~~---~--~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~ 170 (830)
-+++++.++.+-..|.+++...... ... . -.......|++|.... .+-...|..|+..+|..|.-.+
T Consensus 5 ~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~---~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 5 SSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEG---TIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCC---CSCEEECTTTCCCCCHHHHHCS
T ss_pred cccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcC---CCcEEEcCCCCCeEcHHhcCCC
Confidence 3567777777777777776432221 111 1 0111246799999862 4678999999999999997543
No 159
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.65 E-value=3 Score=34.65 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=26.4
Q ss_pred cCcccccccCCC---CcceeeecCCCCCcccchhhhhh
Q psy2279 244 WKLTCYVCKQRG---VGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 244 ~~l~C~iC~~~g---~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
....|.+|++.+ .+..|.|. +|..+||..|...
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGV 50 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCC
Confidence 346899998741 35899998 6999999999854
No 160
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.62 E-value=3.3 Score=35.28 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=29.4
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
+.....|++|...--.-..+-+.|..|++.+|..|...
T Consensus 25 ~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 25 FGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp CSSCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCCCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 34567899998754323457899999999999999863
No 161
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=68.51 E-value=16 Score=30.52 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=40.5
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|..|+=|+|++.-==.|++-|+.-+. ....+||+|.|+. =+|+.-+.|.+-
T Consensus 25 ~~f~eGeDVLarwsDGlfYLGTI~kV~~-------------------------~~e~ClV~F~D~S--~~W~~~kdi~~~ 77 (79)
T 2m0o_A 25 PRLWEGQDVLARWTDGLLYLGTIKKVDS-------------------------AREVCLVQFEDDS--QFLVLWKDISPA 77 (79)
T ss_dssp CCCCTTCEEEBCCTTSCCCEEEEEEEET-------------------------TTTEEEEEETTSC--EEEEETTTBCCC
T ss_pred ceeccCCEEEEEecCCCEEeEEEEEecc-------------------------CCCEEEEEEcCCC--eEEEEeeccccc
Confidence 5788999999999887899999994322 2346999999985 455665666654
Q ss_pred C
Q psy2279 794 G 794 (830)
Q Consensus 794 ~ 794 (830)
+
T Consensus 78 ~ 78 (79)
T 2m0o_A 78 A 78 (79)
T ss_dssp C
T ss_pred c
Confidence 3
No 162
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.39 E-value=2 Score=37.26 Aligned_cols=30 Identities=30% Similarity=0.827 Sum_probs=25.4
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
...|.+|++ .|..|.|. .|..+||..|...
T Consensus 25 ~~~C~vC~~--~g~LL~CD--~C~~~fH~~Cl~P 54 (88)
T 1fp0_A 25 ATICRVCQK--PGDLVMCN--QCEFCFHLDCHLP 54 (88)
T ss_dssp SSCCSSSCS--SSCCEECT--TSSCEECTTSSST
T ss_pred CCcCcCcCC--CCCEEECC--CCCCceecccCCC
Confidence 458999997 37889998 6999999999854
No 163
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.24 E-value=2.3 Score=36.83 Aligned_cols=32 Identities=28% Similarity=0.769 Sum_probs=25.9
Q ss_pred cCcccccccCCC---CcceeeecCCCCCcccchhhhh
Q psy2279 244 WKLTCYVCKQRG---VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 244 ~~l~C~iC~~~g---~GacIqC~~~~C~~~fHvtCA~ 277 (830)
....|.+|+... .+..|.|. .|..+||..|..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~ 49 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHK 49 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSS
T ss_pred CCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCC
Confidence 356899999752 27899998 599999999964
No 164
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=68.23 E-value=2.5 Score=35.03 Aligned_cols=29 Identities=31% Similarity=0.825 Sum_probs=23.5
Q ss_pred ccccccCC-CCcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQR-GVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|.+|++. ..|..|.|. +|..+||..|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCC
Confidence 47788864 247899998 699999999975
No 165
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=67.69 E-value=3.3 Score=31.42 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=27.7
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
....|++|...--.-..+-+.|..|++.+|..|..
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 45789999875432346889999999999999975
No 166
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.49 E-value=2.7 Score=35.47 Aligned_cols=35 Identities=20% Similarity=0.538 Sum_probs=25.1
Q ss_pred CCcccccccCCCcC----------CCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQ----------NSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~----------~~n~iv~Cd~C~~~vHq~CyG 168 (830)
++..|.||.+.-.+ .++.++.-..|+-.||..|..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~ 58 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMS 58 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHH
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHH
Confidence 56779999876533 233355555899999999975
No 167
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=67.04 E-value=2.5 Score=35.64 Aligned_cols=38 Identities=21% Similarity=0.523 Sum_probs=29.1
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
+.....|++|...--.-..+-+.|..|++.||..|..-
T Consensus 31 f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 31 FPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp CSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCCCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 34568999998743222467899999999999999853
No 168
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.87 E-value=3 Score=35.03 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=43.2
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..+..||.|.||-..==||||.|..-+. ...|.|.|.|- .-.=|+...|+||
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~--------------------------~~~~~V~f~Dy--n~e~v~~~~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINK--------------------------EGTFTVQFYDG--VIRCLKRMHIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEEST--------------------------TSSEEEEETTS--CEEEECGGGEECC
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECC--------------------------CCEEEEEEecC--CeEEecHHHCeeC
Confidence 4577999999998766799999986311 12499999987 7777889999999
Q ss_pred CCC
Q psy2279 794 GIT 796 (830)
Q Consensus 794 ~~~ 796 (830)
..+
T Consensus 60 p~~ 62 (74)
T 2equ_A 60 PED 62 (74)
T ss_dssp CGG
T ss_pred Chh
Confidence 753
No 169
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.80 E-value=5.8 Score=34.33 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCCCccchhhhhc----cCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCC
Q psy2279 714 HTFEQLQLVWAKC----RGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRN 788 (830)
Q Consensus 714 ~~~~~~~~v~ak~----~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~ 788 (830)
..|+.|+.|++.. .+==||+|.|++-+. ..+...|.|.|-+=.+.| .||+.+
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~-----------------------~~~~~~YyVHY~g~NkRlDEWV~~~ 64 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKD-----------------------ISGRKLFYVHYIDFNRRLDEWVTHE 64 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECC-----------------------SSSCCCEEEEECSSCSCCCEEECTT
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEE-----------------------cCCCcEEEEEeCCCCcccccccCHh
Confidence 5688999999988 355699999997533 123456999999988888 899999
Q ss_pred CcccC
Q psy2279 789 KLEPL 793 (830)
Q Consensus 789 ~~~~l 793 (830)
.|..-
T Consensus 65 rl~~~ 69 (87)
T 2eko_A 65 RLDLK 69 (87)
T ss_dssp TBCGG
T ss_pred Hcccc
Confidence 98643
No 170
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.99 E-value=2.8 Score=36.33 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=25.6
Q ss_pred CcccccccCCC---CcceeeecCCCCCcccchhhhhh
Q psy2279 245 KLTCYVCKQRG---VGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 245 ~l~C~iC~~~g---~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
...|.+|+..+ .+..|.|. +|..+||..|...
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p 59 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGV 59 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTC
T ss_pred CCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCC
Confidence 46899999741 23899998 6999999999864
No 171
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=65.47 E-value=0.82 Score=36.72 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=28.9
Q ss_pred CCCcccccccCCCcCCCCceEEe--cCcCcccccccccccccCCCceeeeccCC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFC--DMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~C--d~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
++...|.||.+...+ ..+.-| .+.-..||+.|.--=..-.|.+.|+.|..
T Consensus 4 ~~~~~CrIC~~~~~~--~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~ 55 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55 (60)
T ss_dssp CSCCEETTTTEECSC--CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCC
T ss_pred CCCCEeEEeecCCCC--ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCC
Confidence 356789999976321 234443 34445999999853222224455666553
No 172
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.33 E-value=2.2 Score=37.36 Aligned_cols=30 Identities=23% Similarity=0.682 Sum_probs=24.4
Q ss_pred cccccccCCC-CcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQRG-VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g-~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..|.+|++.+ .+..|.|. .|..+||..|..
T Consensus 17 ~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCD--GCDDNYHIFCLL 47 (92)
T ss_dssp CCCSSSCCSGGGGGCEECT--TTCCEECSSSSS
T ss_pred CCCccCCCcCCCCCEEEcC--CCCchhccccCC
Confidence 4799999853 24689998 699999999985
No 173
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=64.83 E-value=3.1 Score=33.67 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=28.1
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.....|++|.+.=-.-..+-+.|..|++.+|..|..
T Consensus 18 ~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 18 MSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCCcccccChhhhccCceeeECCCCCCeEchhHhh
Confidence 346789999875322345789999999999999975
No 174
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=64.59 E-value=3.6 Score=33.34 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=28.7
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+.....|++|...=-.-..+-+.|..|++.+|..|..
T Consensus 20 ~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 56 (65)
T 2enz_A 20 YKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQT 56 (65)
T ss_dssp CCSCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTT
T ss_pred CCCCcCchhcChhheecCCcccccCCCCCccCHhHHh
Confidence 3446889999875322346778999999999999975
No 175
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=64.51 E-value=2.5 Score=41.59 Aligned_cols=28 Identities=32% Similarity=0.802 Sum_probs=23.6
Q ss_pred cccccccCCCCcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
-.|.+|++ .|..+.|. +|..+||..|..
T Consensus 5 ~~C~~C~~--~g~ll~Cd--~C~~~~H~~C~~ 32 (184)
T 3o36_A 5 DWCAVCQN--GGELLCCE--KCPKVFHLSCHV 32 (184)
T ss_dssp SSCTTTCC--CSSCEECS--SSSCEECTTTSS
T ss_pred CccccCCC--CCeeeecC--CCCcccCccccC
Confidence 46999997 48889998 599999999964
No 176
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=63.64 E-value=2.1 Score=40.23 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=52.1
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCC-------------CCcccCCCCC---CC-----CcHHHHhhhcCCCCCeEE
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMP-------------LGYIHNGVPI---PS-----PPEDVLALANNYTEPVYL 772 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p-------------~g~~h~~~~~---~~-----pp~~~~~~~~~~~~~~~~ 772 (830)
..|+.|+.|+|.- |-=+|+|.|++-..+ -|-+-++..+ +. .|.... +...|+
T Consensus 8 ~~f~~gekvl~~h-g~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~------~~~~Y~ 80 (136)
T 2k3y_A 8 QEFALGGRVLAFH-GPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEII------NGKSFF 80 (136)
T ss_dssp GSCCTTSEEEEEC-SSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHH------TSCEEE
T ss_pred cccCCCCEEEEEE-CCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCccccc------ccceEE
Confidence 6899999999988 555999999874432 1333222221 11 111111 123799
Q ss_pred EEEcCCCCCc-ccccCCCcccCCCCh
Q psy2279 773 VLFFDTKRTW-QWLPRNKLEPLGITD 797 (830)
Q Consensus 773 v~ffd~~~~~-~w~~~~~~~~l~~~~ 797 (830)
|.|-+=+++| .||+.+.|..++.+.
T Consensus 81 VHY~GWn~rwDEWV~~dRil~~~eeN 106 (136)
T 2k3y_A 81 IHYQGWKSSWDEWVGYDRIRAYNEEN 106 (136)
T ss_dssp ECCTTSCGGGCEEEETTTEEESCHHH
T ss_pred EEeCCcCCcceeeecHhhhhhCCHhH
Confidence 9999999999 899999999888544
No 177
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=63.57 E-value=3.3 Score=38.73 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=43.2
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCCcc
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNKLE 791 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~~~ 791 (830)
..|+.|+.|+++...-=||+|.|++-.. ....+...|+|.|-+=.+.| .||+.+.|.
T Consensus 11 ~~~~vGe~v~~~~~d~~~y~AkIl~i~~---------------------~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 11 VTVEIGETYLCRRPDSTWHSAEVIQSRV---------------------NDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp CCCCTTSEEEEEETTTEEEEEEEEEEEE---------------------ETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred cccCCCCEEEEEeCCCCEEEEEEEEEEe---------------------ccCCCceEEEEeccCcCCCceeecChhhcc
Confidence 5688999999998523599999998421 00123457999999888888 899999884
No 178
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=63.49 E-value=2.6 Score=49.92 Aligned_cols=35 Identities=23% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
....|++|.+.=-.-..+=+.|..|++.||..|..
T Consensus 47 ~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 47 QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp -----------------------------------
T ss_pred CCCccccccccccccCCceeECCCCCCCcChhhcC
Confidence 46789999875322345678999999999999964
No 179
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=63.10 E-value=1.6 Score=38.91 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=46.9
Q ss_pred CCCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCCcc
Q psy2279 713 SHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNKLE 791 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~~~ 791 (830)
.+.|+.|+.|++.- |==||+|.|++-+. ..+...|+|.|-+=.+.| -|||.+.|.
T Consensus 20 ~~~f~vGekVl~~~-~~~~YeAkIl~v~~-----------------------~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~ 75 (102)
T 2f5k_A 20 KPKFQEGERVLCFH-GPLLYEAKCVKVAI-----------------------KDKQVKYFIHYSGWNKNWDEWVPESRVL 75 (102)
T ss_dssp SCSCCTTCEEEEES-SSSEEEEEEEEEEE-----------------------ETTEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred CcccCCCCEEEEEE-CCEEEEEEEEEEEE-----------------------cCCCcEEEEEeCCcCCCceeeccHhhcc
Confidence 46799999999987 54699999998522 124457999999888888 899999888
Q ss_pred cCCCC
Q psy2279 792 PLGIT 796 (830)
Q Consensus 792 ~l~~~ 796 (830)
+++..
T Consensus 76 k~t~e 80 (102)
T 2f5k_A 76 KYVDT 80 (102)
T ss_dssp ESSHH
T ss_pred cCCHH
Confidence 77643
No 180
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=63.05 E-value=4.3 Score=32.96 Aligned_cols=37 Identities=16% Similarity=0.411 Sum_probs=29.0
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.....|++|...--.-..+-+.|..|++.+|..|...
T Consensus 22 ~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 22 TTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp SSCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CCCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 3467899998764323457899999999999999753
No 181
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.69 E-value=3.3 Score=34.99 Aligned_cols=29 Identities=28% Similarity=0.819 Sum_probs=24.1
Q ss_pred ccccccCC-CCcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQR-GVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~-g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|.+|++. ..|..|.|. .|..+||..|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD--ECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCSTTEEECS--SSCCEEETTSSS
T ss_pred CCcCcCCcCCCCCEEEcC--CCCccccccccC
Confidence 58899874 247899998 699999999975
No 182
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.12 E-value=4.1 Score=34.11 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=25.1
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+.-..|.||...-. .-+.|..|+..||..|..
T Consensus 13 ~~i~~C~IC~~~i~----~g~~C~~C~h~fH~~Ci~ 44 (74)
T 2ct0_A 13 DAVKICNICHSLLI----QGQSCETCGIRMHLPCVA 44 (74)
T ss_dssp SSSCBCSSSCCBCS----SSEECSSSCCEECHHHHH
T ss_pred CCCCcCcchhhHcc----cCCccCCCCchhhHHHHH
Confidence 34578999997642 336899999999999985
No 183
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.01 E-value=2.9 Score=41.94 Aligned_cols=28 Identities=36% Similarity=0.810 Sum_probs=23.9
Q ss_pred cccccccCCCCcceeeecCCCCCcccchhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~ 277 (830)
-.|.+|++ .|..|.|. +|..+||..|..
T Consensus 8 ~~C~~C~~--~g~ll~Cd--~C~~~~H~~Cl~ 35 (207)
T 3u5n_A 8 DWCAVCQN--GGDLLCCE--KCPKVFHLTCHV 35 (207)
T ss_dssp SSBTTTCC--CEEEEECS--SSSCEECTTTSS
T ss_pred CCCCCCCC--CCceEEcC--CCCCccCCccCC
Confidence 46999997 47889997 599999999974
No 184
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=60.85 E-value=3 Score=47.48 Aligned_cols=30 Identities=33% Similarity=0.688 Sum_probs=24.5
Q ss_pred CcccccccCCC--CcceeeecCCCCCcccchhhhh
Q psy2279 245 KLTCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 245 ~l~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~ 277 (830)
...| +|++.. .|.+|||. .|..+||..|..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvg 68 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVG 68 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHT
T ss_pred CeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecC
Confidence 3455 999862 58999999 599999999993
No 185
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=60.84 E-value=2.6 Score=46.31 Aligned_cols=66 Identities=24% Similarity=0.667 Sum_probs=46.4
Q ss_pred CcccccccCCCcCCCCceEEec--CcCcccccccccccc--------cCCCceeeeccCCCCCCCcccccCCCCCCCccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCD--MCNLAVHQDCYGVPY--------IPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKL 204 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~CyGi~~--------ipeg~W~C~~C~~~~~~~~~C~lC~~~gGa~k~ 204 (830)
+..|.+|.++ +.++.|| .|..+|-..|..... .....|.|-.|.-.+. .|.+++
T Consensus 93 ~~yCr~C~~G-----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~-----------~~ll~~ 156 (386)
T 2pv0_B 93 QSYCSICCSG-----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSR-----------SGLLQR 156 (386)
T ss_dssp BCSCTTTCCC-----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCE-----------ETTEEB
T ss_pred cccceEcCCC-----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcch-----------Hhhhhh
Confidence 5799999986 7899999 999999999986543 2346798888874421 133332
Q ss_pred ccCCCccccccccc
Q psy2279 205 TDRGAWAHVVCALW 218 (830)
Q Consensus 205 t~~~~W~Hv~Calw 218 (830)
...|..-+..++
T Consensus 157 --r~~w~~~~~~f~ 168 (386)
T 2pv0_B 157 --RRKWRSQLKAFY 168 (386)
T ss_dssp --CSSHHHHHHHHH
T ss_pred --hhhHHHHHHHHH
Confidence 235777777765
No 186
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=60.60 E-value=3.8 Score=32.99 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=26.9
Q ss_pred CcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
...|++|++.- .=+.+.+.|..|++.+|..|-..
T Consensus 19 ~~~C~~Cg~~i-~~gkq~~kC~dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 19 PESCVPCGKRI-KFGKLSLKCRDCRVVSHPECRDR 52 (61)
T ss_dssp CEECTTTCCEE-CTTCEEEEESSSSCEECGGGGGG
T ss_pred CcccccccCEE-EEeeEeeECCCCCCeEchhHhhc
Confidence 47899996643 23468899999999999999654
No 187
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=59.48 E-value=6 Score=34.59 Aligned_cols=57 Identities=11% Similarity=0.273 Sum_probs=44.9
Q ss_pred CCCCCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCC
Q psy2279 711 SGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNK 789 (830)
Q Consensus 711 ~~~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~ 789 (830)
.....|+.|..|+++..| =||+|.|+.-+. ..+...|.|.|-+=.+.| .||+.+.
T Consensus 19 ~~~~~~~vG~kv~v~~~~-~~y~AkIl~ir~-----------------------~~~~~~YyVHY~g~NkRlDEWV~~~r 74 (92)
T 2ro0_A 19 NSVDDIIIKCQCWVQKND-EERLAEILSINT-----------------------RKAPPKFYVHYVNYNKRLDEWITTDR 74 (92)
T ss_dssp SCTTSCCTTCEEEEEETT-EEEEEEEEEEEC-----------------------SSSSCEEEEEETTSCTTSCEEEEGGG
T ss_pred cccccccCCCEEEEEECC-EEEEEEEEEEEE-----------------------cCCCcEEEEEeCCcCcccccccCHhH
Confidence 334678999999999644 689999997432 134567999999988888 8999999
Q ss_pred cc
Q psy2279 790 LE 791 (830)
Q Consensus 790 ~~ 791 (830)
|.
T Consensus 75 l~ 76 (92)
T 2ro0_A 75 IN 76 (92)
T ss_dssp EE
T ss_pred cc
Confidence 85
No 188
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=59.24 E-value=4.7 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=26.2
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
....|++|...-- +-+.|..|++.+|..|...
T Consensus 13 ~pt~C~~C~~~l~----qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 13 KLAFCDICQKFLL----NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp SCEECTTSSSEEC----SEEECTTTTCCBCSTTSSS
T ss_pred CCcCCCCcccccc----cCCEeCCCCCeEChhHHhh
Confidence 4578999987521 7889999999999999863
No 189
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=58.83 E-value=3.7 Score=33.23 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCCCccchhhhhcc--CCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcc
Q psy2279 714 HTFEQLQLVWAKCR--GYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLE 791 (830)
Q Consensus 714 ~~~~~~~~v~ak~~--g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~ 791 (830)
..+.+||++.||-. |- ||+|.|..-.. ....+.|.|-|= .....++.+.|+
T Consensus 7 ~~~~vGd~c~A~~s~Dg~-wYrA~I~~v~~-------------------------~~~~~~V~fvdY-Gn~e~V~~~~Lr 59 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQ-CYEAEIEEIDE-------------------------ENGTAAITFAGY-GNAEVTPLLNLK 59 (64)
T ss_dssp SCCCTTCEEEEECTTTSS-EEEEEEEEEET-------------------------TTTEEEEEETTT-TEEEEEEGGGEE
T ss_pred CCCCCCCEEEEEECCCCC-EEEEEEEEEcC-------------------------CCCEEEEEEEec-CCEEEEeHHHcE
Confidence 46789999999973 64 99999996311 123588998875 567889999999
Q ss_pred cCC
Q psy2279 792 PLG 794 (830)
Q Consensus 792 ~l~ 794 (830)
||.
T Consensus 60 pl~ 62 (64)
T 4a4f_A 60 PVE 62 (64)
T ss_dssp CCS
T ss_pred eCC
Confidence 874
No 190
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=58.71 E-value=13 Score=40.78 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=30.4
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
......|.+|...-..-.++-..|..|+..||..|.+
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 3456799999986544567889999999999999986
No 191
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.49 E-value=5.3 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=28.4
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.....|++|...=-.-..+-+.|..|++.||..|..
T Consensus 26 ~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 26 GSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp SSCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCcCCcccCccccccccCCCcCCCcCCccCHhHHh
Confidence 346789999875332346789999999999999975
No 192
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=57.96 E-value=3.5 Score=34.73 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=31.0
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
..++..|.||.+.-...+-.++-| .|+-.|++.|+.-. ...+...|+.|+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~-~~~~~~~CP~CR~ 58 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRI-RTDENGLCPACRK 58 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHH-TTSSCSBCTTTCC
T ss_pred cccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHH-HhcCCCCCCCCCC
Confidence 456789999998532211122224 68888888887532 2234566777764
No 193
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.66 E-value=4.8 Score=33.88 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=39.7
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
.+.+..|..|...-.--.|.=..|..|..-|-..|--.. ..+.|+|.-|..
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--~~~~W~C~VC~k 72 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--SNGTWRCKVCSG 72 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--STTCEEEHHHHS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccccC--CCCCEEEeeCch
Confidence 456789999998766556777799999999999994322 338899999864
No 194
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=57.61 E-value=4.2 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=24.8
Q ss_pred CCCcccccccCCCcCC--CCceEEecCcCcccccccccc
Q psy2279 133 DDEAVCCICNDGECQN--SNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~--~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.++..|.||.+.-.+. .+..+.--.|+-.||..|..-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 43 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 43 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHH
Confidence 3567899999753221 233445558999999999753
No 195
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=57.55 E-value=3.8 Score=44.32 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=27.2
Q ss_pred CCCcccccccCCCcCCC-CceEEec--CcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNS-NVILFCD--MCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~-n~iv~Cd--~C~~~vHq~CyG 168 (830)
+....|.||.....+++ =....|+ .|+..||..|.-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~ 344 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE 344 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHH
Confidence 34568999998765422 2346898 899999999974
No 196
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=57.55 E-value=6.3 Score=45.80 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=31.1
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
.......|.+|...-..-..+-+.|..|+..||..|.+.
T Consensus 525 ~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 525 SFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred eCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 345568999998864334567899999999999999874
No 197
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=56.77 E-value=5.3 Score=33.20 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=27.7
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.....|+.|++.- ..+-+.|..|+..+|..|..
T Consensus 33 ~~pt~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 33 GGPGWCDLCGREV---LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SSCCBCTTTSSBC---SSCCEECTTSSCEECTGGGG
T ss_pred CCCcchhhhhHHH---HhCcCccCCCCCeechhhhc
Confidence 4567899998764 56778999999999999985
No 198
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=56.21 E-value=4.8 Score=30.61 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=25.4
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
++..|.||.+.-. +.+..+..-.|+-.||..|..
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~~~~CgH~fc~~Ci~ 37 (55)
T 2ecm_A 4 GSSGCPICLEDIH-TSRVVAHVLPCGHLLHRTCYE 37 (55)
T ss_dssp CCCSCTTTCCCCC-TTTSCEEECTTSCEEETTHHH
T ss_pred CCCcCcccChhhc-CCCcCeEecCCCCcccHHHHH
Confidence 4678999998632 234456667899999999985
No 199
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=55.29 E-value=6.4 Score=34.54 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=44.5
Q ss_pred CCCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCCcc
Q psy2279 713 SHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNKLE 791 (830)
Q Consensus 713 ~~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~~~ 791 (830)
...|+.|+.|+++. +==||+|.|+.-+. ..+...|.|.|-+=.+.| .||+.+.|.
T Consensus 23 ~~~~~vG~kv~v~~-~~~~yeAeIl~ir~-----------------------~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 23 VDDIIIKCQCWVQK-NDEERLAEILSINT-----------------------RKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GGGCCTTEEEEEEC-SSCEEEEEEEEEEC-----------------------SSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred cccccCCCEEEEEE-CCEEEEEEEEEEEE-----------------------cCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 46789999999996 44689999997532 234567999999888888 899999996
Q ss_pred c
Q psy2279 792 P 792 (830)
Q Consensus 792 ~ 792 (830)
.
T Consensus 79 l 79 (94)
T 2rnz_A 79 L 79 (94)
T ss_dssp S
T ss_pred c
Confidence 3
No 200
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=54.52 E-value=6.4 Score=33.80 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=26.5
Q ss_pred CCcccccccCCCc-CCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGEC-QNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~-~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
....|.||...=. ...=.-+.|--|+..||..|+.
T Consensus 37 ~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 4579999987522 1223678899999999999985
No 201
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=54.36 E-value=2.6 Score=35.53 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=43.4
Q ss_pred CCCCccchhhhhccC---CCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCC
Q psy2279 714 HTFEQLQLVWAKCRG---YPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNK 789 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g---~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~ 789 (830)
..|+.|+.|+++... -=||+|.|++-+. ..+...|+|.|-+=.+.| .|||.+.
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~-----------------------~~~~~~Y~VHY~gwnkr~DEWV~~~r 60 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEI-----------------------DDGEVLYLVHYYGWNVRYDEWVKADR 60 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEE-----------------------ETTEEEEEEEETTSCCSSCEEEEGGG
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEc-----------------------cCCceEEEEEeCCcCCCceEecChhh
Confidence 568899999998751 1379999987422 234456999999888888 8999998
Q ss_pred cccCC
Q psy2279 790 LEPLG 794 (830)
Q Consensus 790 ~~~l~ 794 (830)
|....
T Consensus 61 i~~~~ 65 (76)
T 2lcc_A 61 IIWPL 65 (76)
T ss_dssp EECSS
T ss_pred ccccc
Confidence 87554
No 202
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=54.10 E-value=4.8 Score=31.26 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=36.6
Q ss_pred CCccchhhhhcc--CCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 716 FEQLQLVWAKCR--GYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 716 ~~~~~~v~ak~~--g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
+.+|+++-||-. | =||+|.|..-.. ....+.|.|-|= ....-++.+.|+|+
T Consensus 2 wk~G~~c~A~~s~Dg-~wYrA~I~~i~~-------------------------~~~~~~V~fvDY-Gn~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDN-KFYRAEVEALHS-------------------------SGMTAVVKFIDY-GNYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTT-EEEEEEEEEC---------------------------CCSEEEEEETTT-CCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCC-CEEEEEEEEEeC-------------------------CCCEEEEEEEcc-CCeEEEeHHHEEEC
Confidence 568999999973 4 399999987411 123588888765 45677888888775
No 203
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=52.83 E-value=5.8 Score=37.49 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=25.6
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
.-.|.+|+. .|..|-|. .|..+||..|...
T Consensus 63 ~d~C~vC~~--GG~LlcCD--~Cpr~Fh~~Cl~p 92 (142)
T 2lbm_A 63 DEQCRWCAE--GGNLICCD--FCHNAFCKKCILR 92 (142)
T ss_dssp BCSCSSSCC--CSSEEECS--SSCCEEEHHHHHH
T ss_pred CCeecccCC--CCcEEeCC--CCCCeeeHhhcCC
Confidence 458999997 48888887 7999999999964
No 204
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.67 E-value=5.4 Score=32.50 Aligned_cols=36 Identities=19% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..+++..|.||.+.-. +...++.. .|+-.||..|..
T Consensus 11 ~~~~~~~C~IC~~~~~-~~~~~~~~-~C~H~f~~~Ci~ 46 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFK-PRDELGIC-PCKHAFHRKCLI 46 (74)
T ss_dssp CCCCSCBCSSSCCBCC-SSSCEEEE-TTTEEEEHHHHH
T ss_pred cCCCCCCCcCCCcccC-CCCcEEEc-CCCCEecHHHHH
Confidence 4566789999998633 22333333 599999999975
No 205
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.37 E-value=7.3 Score=32.58 Aligned_cols=30 Identities=20% Similarity=0.610 Sum_probs=24.5
Q ss_pred cccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
..|.||..- .-..+.|. .|...||..|..+
T Consensus 16 ~~C~IC~~~-i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 16 KICNICHSL-LIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp CBCSSSCCB-CSSSEECS--SSCCEECHHHHHH
T ss_pred CcCcchhhH-cccCCccC--CCCchhhHHHHHH
Confidence 479999986 34567886 7999999999975
No 206
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=52.36 E-value=2.7 Score=38.50 Aligned_cols=34 Identities=26% Similarity=0.716 Sum_probs=27.7
Q ss_pred eEEecCcCcccccccccccc--------cCC-CceeeeccCCC
Q psy2279 152 ILFCDMCNLAVHQDCYGVPY--------IPE-GQWLCRRCLHT 185 (830)
Q Consensus 152 iv~Cd~C~~~vHq~CyGi~~--------ipe-g~W~C~~C~~~ 185 (830)
||.||.|..-+|..|-|+.. +|+ ..|.|..|...
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 78999999999999999853 353 46999999753
No 207
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.36 E-value=2.5 Score=35.26 Aligned_cols=36 Identities=22% Similarity=0.542 Sum_probs=27.4
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.....|++|...=-.-..+-+.|..|++.||..|..
T Consensus 26 ~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~ 61 (74)
T 2db6_A 26 KKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQS 61 (74)
T ss_dssp SSCEECSSSCCEECHHHHEEEEESSSCCEECTTTTG
T ss_pred CCCcCchhcChhhccccCCccccCCCCCccChhHHh
Confidence 346789999874221124778999999999999986
No 208
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=51.28 E-value=10 Score=37.10 Aligned_cols=62 Identities=23% Similarity=0.494 Sum_probs=37.8
Q ss_pred CCceEEecCcCcccccccccccccCCCceeeeccCC-CCCCCcccccCCCCCCC-cccccCCCccccc-ccccC
Q psy2279 149 SNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH-TPSRAVDCVLCPNNGGA-FKLTDRGAWAHVV-CALWI 219 (830)
Q Consensus 149 ~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~-~~~~~~~C~lC~~~gGa-~k~t~~~~W~Hv~-Calw~ 219 (830)
+-.+|.|+.|..-||..|.+... |. |.. .......|..|...|-. |++. .-.|+|++ .||+.
T Consensus 17 ~~~mLqC~~C~qWFH~~Cl~~~~---~~-----~lp~~~fY~F~C~~C~~~g~E~f~R~-~~~w~~v~~laLyN 81 (177)
T 3rsn_A 17 GEVELQCGICTKWFTADTFGIDT---SS-----CLPFMTNYSFHCNVCHHSGNTYFLRK-QANLKEMCLSALAN 81 (177)
T ss_dssp TSCEEECTTTCCEEEGGGGTCCC---TT-----CCTTCCSEEEECTTTSTTSSCEEEEC-CCCHHHHHHHHHHH
T ss_pred CceeEeeccccceecHHHhcccc---cC-----ccccceeEEEEccccCCCCcceeEec-cCCHHHHHHHHHHh
Confidence 45799999999999999998543 11 111 01233457777654423 4433 44699984 45544
No 209
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.10 E-value=5.3 Score=39.56 Aligned_cols=29 Identities=31% Similarity=0.860 Sum_probs=24.2
Q ss_pred cccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
-.|.+|+. .|..+.|. +|..+||..|...
T Consensus 3 ~~C~~C~~--~g~ll~Cd--~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQK--PGDLVMCN--QCEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCC--CSSCCCCT--TTCCBCCSTTSTT
T ss_pred CcCccCCC--CCceeECC--CCCchhccccCCC
Confidence 36999997 37888897 6999999999854
No 210
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=50.73 E-value=6.5 Score=33.17 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=22.8
Q ss_pred ccccccCCC-CcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQRG-VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~g-~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|.+|++.+ .+..|.|. .|..+||..|..
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~ 57 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLD 57 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSS
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCC
Confidence 377787752 36789998 699999999975
No 211
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=50.16 E-value=5.2 Score=44.95 Aligned_cols=29 Identities=24% Similarity=0.545 Sum_probs=23.8
Q ss_pred ccccccCCC--CcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQRG--VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~g--~GacIqC~~~~C~~~fHvtCA~ 277 (830)
..++|++.. .|.+|||. .|..+||..|..
T Consensus 6 ~yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVg 36 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECD--MCQDWFHGSCVG 36 (447)
T ss_dssp EETTTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred eEEeCCCcCCCCCCeEEcC--CCCcccccccCC
Confidence 345898862 48999999 699999999983
No 212
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=49.58 E-value=6.5 Score=31.53 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..+++..|.||.+.-. .+..+..-.|+-.||..|..
T Consensus 10 ~~~~~~~C~IC~~~~~--~~~~~~~~~C~H~fc~~Ci~ 45 (69)
T 2kiz_A 10 EEDTEEKCTICLSILE--EGEDVRRLPCMHLFHQVCVD 45 (69)
T ss_dssp STTCCCSBTTTTBCCC--SSSCEEECTTSCEEEHHHHH
T ss_pred cCCCCCCCeeCCcccc--CCCcEEEeCCCCHHHHHHHH
Confidence 3455778999987532 12334455799999999975
No 213
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.30 E-value=13 Score=31.90 Aligned_cols=35 Identities=26% Similarity=0.766 Sum_probs=27.8
Q ss_pred CCceEEecCcCc-ccccccccccccCCCceeeeccCC
Q psy2279 149 SNVILFCDMCNL-AVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 149 ~n~iv~Cd~C~~-~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
.-.||.|..|+- ..|..|..+.. ....|.|..|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~l~~-~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSSLRP-NSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGTCCT-TCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhCCcC-CCCCEECCcCcc
Confidence 357999999984 79999987532 456799999984
No 214
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.87 E-value=7.4 Score=31.46 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccccccc-CCCceeeeccCC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI-PEGQWLCRRCLH 184 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~i-peg~W~C~~C~~ 184 (830)
..+++..|.||.+.-. +..+. .|+-.||..|...-.. ..+...|+.|..
T Consensus 16 ~~~~~~~C~IC~~~~~---~~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ---KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLCKT 65 (73)
T ss_dssp CCCCCCBCTTTCSBCS---SEEEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCC
T ss_pred hCccCCEeccCCcccC---CeEEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCC
Confidence 4566789999998532 33333 8999999999754322 123344555543
No 215
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=47.17 E-value=7.1 Score=33.50 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.+++..|.||.+.-. +++..+. -.|+-.||..|..
T Consensus 37 ~~~~~~C~IC~~~~~-~~~~~~~-l~C~H~Fh~~Ci~ 71 (91)
T 2l0b_A 37 VGQEMCCPICCSEYV-KGDVATE-LPCHHYFHKPCVS 71 (91)
T ss_dssp SSSCSEETTTTEECC-TTCEEEE-ETTTEEEEHHHHH
T ss_pred cCCCCCCcccChhhc-CCCcEEe-cCCCChHHHHHHH
Confidence 456788999986532 2233333 4599999999975
No 216
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.75 E-value=11 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..+++..|.||.+.-.. ...+.--.|+-.||..|.-
T Consensus 11 ~~~~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~ 46 (78)
T 2ect_A 11 HVGSGLECPVCKEDYAL--GESVRQLPCNHLFHDSCIV 46 (78)
T ss_dssp TSSSSCCCTTTTSCCCT--TSCEEECTTSCEEETTTTH
T ss_pred cCCCCCCCeeCCccccC--CCCEEEeCCCCeecHHHHH
Confidence 34567899999876322 2223333699999999974
No 217
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=46.64 E-value=17 Score=35.60 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=32.2
Q ss_pred cccCCC--CcceeeecCCCCCcccchhhhhhcCcccccccccCCCCCCceeeeEEEeCCCCCCCC
Q psy2279 250 VCKQRG--VGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAHTPPD 312 (830)
Q Consensus 250 iC~~~g--~GacIqC~~~~C~~~fHvtCA~~aG~~~~~~~~~~~~~~~~~~v~~~~~C~~H~~~~ 312 (830)
+|+..| .-.++||. .|.++||..|.+...-.+ .++...+.+.|...++.+
T Consensus 9 YCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~-----------lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 9 DEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSC-----------LPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTC-----------CTTCCSEEEECTTTSTTS
T ss_pred EcCCCCCCCceeEeec--cccceecHHHhcccccCc-----------cccceeEEEEccccCCCC
Confidence 677642 23689998 499999999997322111 122246788999998755
No 218
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=46.40 E-value=5.2 Score=31.83 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=27.1
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.....|+.|++.- ..+-+.|..|++.+|..|..
T Consensus 20 ~~pt~C~~C~~~i---~kqg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 20 GGPGWCDLCGREV---LRQALRCANCKFTCHSECRS 52 (59)
T ss_dssp SCCEECTTTCSEE---CSCCEECTTTSCEECHHHHT
T ss_pred CCCeEchhcchhh---hhCccEeCCCCCeEehhhhh
Confidence 3457899998764 46778999999999999974
No 219
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.13 E-value=6.9 Score=30.80 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.++++..|.||.+.-. +..+. .|+-.||..|..
T Consensus 16 ~~~~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~ 48 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ---KPVTI--DCGHNFCLKCIT 48 (63)
T ss_dssp CCCCCCBCTTTCSBCS---SCEEC--TTSSEECHHHHH
T ss_pred hCccCCCCCcCCchhC---CeEEe--CCCCcchHHHHH
Confidence 4567889999997532 44443 788888888875
No 220
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.17 E-value=9.7 Score=35.36 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=26.2
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhhhc
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQA 279 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~a 279 (830)
....|.+|+. .|..|-|+ .|..+||..|....
T Consensus 56 ~~~~C~vC~d--GG~LlcCd--~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 56 MDEQCRWCAE--GGNLICCD--FCHNAFCKKCILRN 87 (129)
T ss_dssp CBSSCTTTCC--CSEEEECS--SSSCEEEHHHHHHH
T ss_pred CCCcCeecCC--CCeeEecC--CCchhhhHHHhCCC
Confidence 3457999997 48888886 79999999999754
No 221
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=44.49 E-value=12 Score=32.31 Aligned_cols=32 Identities=28% Similarity=0.644 Sum_probs=27.5
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhh
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQ 278 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~ 278 (830)
...|.+|+..+.|..-.|. .|.-.+|+.||..
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCC
Confidence 3579999998778888997 5999999999964
No 222
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=43.88 E-value=8.8 Score=31.43 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=29.8
Q ss_pred CCCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 130 ~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
..+.++..|.||.+.-. +. +.-..|+-.||..|...-....+...|+.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~ 60 (74)
T 2yur_A 10 DPIPDELLCLICKDIMT---DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60 (74)
T ss_dssp CCSCGGGSCSSSCCCCT---TC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCC
T ss_pred ccCCCCCCCcCCChHHh---CC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCC
Confidence 34556789999987632 33 33445888888888753322122334555543
No 223
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=43.37 E-value=5.4 Score=36.44 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=1.1
Q ss_pred CCcccccccCCCcC-------------CCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQ-------------NSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~-------------~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+++.|+||.+.-.+ ..+..+.--.|+-.||..|..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~ 94 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 94 (117)
T ss_dssp CC----------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH
Confidence 46789999875321 111223334688889999853
No 224
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=42.32 E-value=8.4 Score=39.20 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=21.4
Q ss_pred ccccccCCC-CcceeeecCCCCCcccchhhhh
Q psy2279 247 TCYVCKQRG-VGACIQCHKTNCYAAFHVTCAQ 277 (830)
Q Consensus 247 ~C~iC~~~g-~GacIqC~~~~C~~~fHvtCA~ 277 (830)
.|.+|++.+ .|..+.|. +|..+||..|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~ 205 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLD 205 (226)
T ss_dssp SCSSSCCCCC--CCEECS--SSCCEECSCC--
T ss_pred CCcCCCCCCCCCCeEEcC--CCCcceeCccCC
Confidence 589998742 37888998 699999999985
No 225
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=42.30 E-value=14 Score=33.31 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=21.1
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
++..|.||.+.-. +.+.. .|+-.||..|..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~ 80 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITT--VCQHNVCKDCLD 80 (124)
T ss_dssp HHTBCTTTSSBCS---SEEEC--TTSCEEEHHHHH
T ss_pred cCCCCCcCChHHc---CcEEe--eCCCcccHHHHH
Confidence 4578999997532 33332 788888888874
No 226
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.16 E-value=12 Score=31.33 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
..+++..|.||.+.-.......+.- .|+-.||..|+.-
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~ 48 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEK 48 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHH
T ss_pred hccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHH
Confidence 4556789999998643222213333 6898898888753
No 227
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.21 E-value=9.5 Score=31.17 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=24.9
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.+++..|.||.+.-. ....+..-.|+-.||..|..
T Consensus 20 ~~~~~~C~IC~~~~~--~~~~~~~l~C~H~fh~~Ci~ 54 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFE--SRQLLRVLPCNHEFHAKCVD 54 (75)
T ss_dssp SSSCCEETTTTEECC--BTCEEEEETTTEEEETTHHH
T ss_pred cCCCCCCeECCcccC--CCCeEEEECCCCHhHHHHHH
Confidence 345778999997532 23345555699999999975
No 228
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=38.48 E-value=8.8 Score=34.09 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCcccccccCCCcC-------------CCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQ-------------NSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~-------------~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.+..|.||.+.-.. +....+..-.|+-.||..|..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~ 71 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL 71 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHH
Confidence 45689999875321 112345567899999999975
No 229
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=37.57 E-value=9.7 Score=33.95 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..++..|.||.+.- .+.++. .|+-.||..|+.
T Consensus 12 ~~~~~~C~iC~~~~---~~p~~~--~CgH~fC~~Ci~ 43 (115)
T 3l11_A 12 SLSECQCGICMEIL---VEPVTL--PCNHTLCKPCFQ 43 (115)
T ss_dssp CHHHHBCTTTCSBC---SSCEEC--TTSCEECHHHHC
T ss_pred CCCCCCCccCCccc---CceeEc--CCCCHHhHHHHH
Confidence 34567899999753 234433 688888888864
No 230
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.56 E-value=11 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
..+++..|.||.+.-. +.++. .|+-.||..|...
T Consensus 15 ~~~~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~ 48 (85)
T 2ecv_A 15 NVKEEVTCPICLELLT---QPLSL--DCGHSFCQACLTA 48 (85)
T ss_dssp CCCCCCCCTTTCSCCS---SCBCC--SSSCCBCTTHHHH
T ss_pred HccCCCCCCCCCcccC---CceeC--CCCCHHHHHHHHH
Confidence 4556789999998632 33322 6888888888753
No 231
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=36.31 E-value=11 Score=32.33 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCCCcccccccCCCcCCCCc--eEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNV--ILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~--iv~Cd~C~~~vHq~CyG 168 (830)
+.....|+.|...--.-..+ -+.|..|++.+|..|..
T Consensus 32 ~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 32 YHFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp CSSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred CCCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 44568999997743222344 88999999999999987
No 232
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=35.52 E-value=9.7 Score=34.00 Aligned_cols=33 Identities=30% Similarity=0.843 Sum_probs=25.1
Q ss_pred cccccccCCCCcceeeecC--------------CCCCcccchhhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHK--------------TNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~--------------~~C~~~fHvtCA~~ 278 (830)
..|.||.......|+.|.. ..|...||..|...
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 84 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 84 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHH
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHH
Confidence 4799998865567776642 46999999999865
No 233
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=35.44 E-value=17 Score=28.63 Aligned_cols=54 Identities=13% Similarity=0.000 Sum_probs=39.8
Q ss_pred CCCccchhhhhcc-CCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 715 TFEQLQLVWAKCR-GYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 715 ~~~~~~~v~ak~~-g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
.+..|+++.||-. .==||+|.|..-.. ....+.|.|.|= ....-++.+.|+||
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~-------------------------~~~~~~V~f~DY-Gn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDF-------------------------KRETCVVVYTGY-GNREEQNLSDLLSP 56 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEET-------------------------TTTEEEEEETTT-TEEEEEEGGGCBCT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcC-------------------------CCCEEEEEEEcC-CCEEEEcHHHeeCC
Confidence 5789999999974 23599999997411 123589999874 46677888888887
Q ss_pred C
Q psy2279 794 G 794 (830)
Q Consensus 794 ~ 794 (830)
.
T Consensus 57 ~ 57 (59)
T 1mhn_A 57 I 57 (59)
T ss_dssp T
T ss_pred C
Confidence 5
No 234
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=34.77 E-value=7.8 Score=33.86 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=25.3
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+++..|.||.+.- ..-+.|..|+-.||..|..
T Consensus 20 ~~~~~C~IC~~~~----~~p~~~~~CgH~FC~~Ci~ 51 (100)
T 3lrq_A 20 AEVFRCFICMEKL----RDARLCPHCSKLCCFSCIR 51 (100)
T ss_dssp HHHTBCTTTCSBC----SSEEECTTTCCEEEHHHHH
T ss_pred CCCCCCccCCccc----cCccccCCCCChhhHHHHH
Confidence 3568899999863 3467788999999999975
No 235
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=34.37 E-value=12 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=22.3
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.++++..|.||.+.-. +.++ -.|+-.||..|..
T Consensus 8 ~~~~~~~C~IC~~~~~---~p~~--l~CgH~fC~~Ci~ 40 (79)
T 2egp_A 8 NVQEEVTCPICLELLT---EPLS--LDCGHSLCRACIT 40 (79)
T ss_dssp CCCCCCEETTTTEECS---SCCC--CSSSCCCCHHHHS
T ss_pred hcccCCCCcCCCcccC---CeeE--CCCCCHHHHHHHH
Confidence 3556789999987532 3332 2688888888865
No 236
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=33.74 E-value=17 Score=31.24 Aligned_cols=30 Identities=23% Similarity=0.656 Sum_probs=24.5
Q ss_pred CcccccccCCCcCCCCceEEec--CcCcccccccc
Q psy2279 135 EAVCCICNDGECQNSNVILFCD--MCNLAVHQDCY 167 (830)
Q Consensus 135 d~~C~VC~~~e~~~~n~iv~Cd--~C~~~vHq~Cy 167 (830)
...|.+|... ..+.-|.|. +|..+||..|-
T Consensus 17 ~l~C~iC~~~---~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 17 KLTCYLCKQK---GVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCCBTTTTBC---CSSCEEECSCTTTCCEEEHHHH
T ss_pred cCCCcCCCCC---CCcEeEecCCCCCCCcCcHHHH
Confidence 4689999753 237899997 59999999994
No 237
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=33.71 E-value=18 Score=37.02 Aligned_cols=32 Identities=19% Similarity=0.528 Sum_probs=26.1
Q ss_pred CcccccccCCCCcceeeecCCCCCcccchhhhhhc
Q psy2279 245 KLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQA 279 (830)
Q Consensus 245 ~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~a 279 (830)
-..|.+|+.- ....+.|.. |...||..|....
T Consensus 180 i~~C~iC~~i-v~~g~~C~~--C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 180 VKICNICHSL-LIQGQSCET--CGIRMHLPCVAKY 211 (238)
T ss_dssp CCBCTTTCSB-CSSCEECSS--SCCEECHHHHHHH
T ss_pred CCcCcchhhH-HhCCcccCc--cChHHHHHHHHHH
Confidence 3579999986 556689974 9999999999653
No 238
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.29 E-value=15 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=22.8
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..+++..|.||.+.-. +..+ -.|+-.||..|..
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~--~~CgH~fC~~Ci~ 43 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLK---EPVI--IECGHNFCKACIT 43 (58)
T ss_dssp CSCCCCBCSSSCCBCS---SCCC--CSSCCCCCHHHHH
T ss_pred ccccCCCCccCCcccC---ccEe--CCCCCccCHHHHH
Confidence 4556789999998642 2222 2688888888865
No 239
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.23 E-value=24 Score=28.36 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=22.1
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..++..|.||.+.- .+.++. .|+-.||..|..
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~--~CgH~fC~~Ci~ 43 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSL--PCKHVFCYLCVK 43 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEE--TTTEEEEHHHHH
T ss_pred CCCCCCCccCCccc---CCCEEc--cCCCHHHHHHHH
Confidence 34567899999753 233333 688888888864
No 240
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=32.82 E-value=21 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.6
Q ss_pred cccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 136 ~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..|++|+..-- . =+.|..|+..+|+.|-.
T Consensus 15 t~C~~C~k~i~---~-G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMI---F-GVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSC---C-EEEETTTTEEESSSCTT
T ss_pred cCccccCceeE---C-cCCCCCCCCccchhhcC
Confidence 78999987642 2 27999999999999975
No 241
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=32.81 E-value=24 Score=29.63 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.4
Q ss_pred CCCCccchhhhhcc-CCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCccc
Q psy2279 714 HTFEQLQLVWAKCR-GYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEP 792 (830)
Q Consensus 714 ~~~~~~~~v~ak~~-g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~ 792 (830)
..+..|++|.||.. -==||.|.|..-.. ....+.|+|.|= ....-|+.+.|+|
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~-------------------------~~~~~~V~fiDY-GN~e~V~~~~Lr~ 61 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHS-------------------------SGMTAVVKFTDY-GNYEEVLLSNIKP 61 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECS-------------------------SSSEEEEEETTT-TEEEEEEGGGEEE
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeC-------------------------CCCEEEEEEEcC-CCeEEEcHHHeEe
Confidence 45679999999984 23599999997411 124588998865 6778899999999
Q ss_pred CCCC
Q psy2279 793 LGIT 796 (830)
Q Consensus 793 l~~~ 796 (830)
|-.+
T Consensus 62 l~~~ 65 (78)
T 2d9t_A 62 VQTE 65 (78)
T ss_dssp CCCC
T ss_pred CCHH
Confidence 8754
No 242
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=32.59 E-value=7.7 Score=37.10 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.++..|.||.+.- ..-+.+..|+-.||..|..
T Consensus 52 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~ 83 (165)
T 2ckl_B 52 HSELMCPICLDML----KNTMTTKECLHRFCADCII 83 (165)
T ss_dssp HHHHBCTTTSSBC----SSEEEETTTCCEEEHHHHH
T ss_pred CCCCCCcccChHh----hCcCEeCCCCChhHHHHHH
Confidence 3466899998763 2345666888888888864
No 243
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.56 E-value=42 Score=25.53 Aligned_cols=27 Identities=33% Similarity=0.890 Sum_probs=20.9
Q ss_pred cCCCceeeeccCCCC-CCCcccccCCCC
Q psy2279 172 IPEGQWLCRRCLHTP-SRAVDCVLCPNN 198 (830)
Q Consensus 172 ipeg~W~C~~C~~~~-~~~~~C~lC~~~ 198 (830)
-++|.|-|..|.... .....|+-|...
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~p 34 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESA 34 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCC
Confidence 367999999998764 456789999644
No 244
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.47 E-value=13 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=27.1
Q ss_pred CCCCCcccccccCCCcC--CCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQ--NSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~--~~n~iv~Cd~C~~~vHq~CyG 168 (830)
..+++..|.||.+.-.+ .....+.--.|+-.||..|..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~ 50 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 50 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHH
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHH
Confidence 44567899999986332 124455667899999999975
No 245
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=31.46 E-value=21 Score=25.32 Aligned_cols=25 Identities=28% Similarity=0.881 Sum_probs=17.9
Q ss_pred CCCceeeeccCCC-CCCCcccccCCC
Q psy2279 173 PEGQWLCRRCLHT-PSRAVDCVLCPN 197 (830)
Q Consensus 173 peg~W~C~~C~~~-~~~~~~C~lC~~ 197 (830)
..|.|-|..|... ......|+-|..
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet 29 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACES 29 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCC
T ss_pred CCCceECCeeEeECccccCEEcccCC
Confidence 6799999999865 345668988863
No 246
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.39 E-value=17 Score=29.98 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=23.5
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi 169 (830)
..+++..|.||.+.-. +.+ .. .|+-.||..|...
T Consensus 15 ~~~~~~~C~IC~~~~~---~p~-~~-~CgH~fC~~Ci~~ 48 (85)
T 2ecw_A 15 MIKEEVTCPICLELLK---EPV-SA-DCNHSFCRACITL 48 (85)
T ss_dssp CCCTTTSCTTTCSCCS---SCE-EC-TTSCCBCHHHHHH
T ss_pred hCccCCCCcCCChhhC---cce-eC-CCCCHHHHHHHHH
Confidence 3556789999998632 333 32 5888888888753
No 247
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=30.89 E-value=23 Score=30.89 Aligned_cols=57 Identities=11% Similarity=0.228 Sum_probs=42.4
Q ss_pred ccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCCcccCC
Q psy2279 718 QLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNKLEPLG 794 (830)
Q Consensus 718 ~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~~~~l~ 794 (830)
|+..|+++.++==||+|.|+.-+.- ....+...|.|.|-+=.+.| .||+.+.|..+.
T Consensus 17 ~~e~vlc~~~dg~~yeAeIl~ir~~--------------------~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~ 74 (92)
T 2bud_A 17 PDKIYFIRREDGTVHRGQVLQSRTT--------------------ENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNA 74 (92)
T ss_dssp TTSCEEEECTTSCEEEEEEEEEECT--------------------TTCSSCCEEEEECSSSCTTTCEEEETTTEESCH
T ss_pred CCCEEEEEeCCCCEEEEEEEEEeec--------------------cCCCCCcEEEEEeCCcccccccccCHHHhchhc
Confidence 6888999986556899999974220 00123457999999888888 899999987664
No 248
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=30.64 E-value=26 Score=28.55 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=22.0
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+.++..|.||.+.-. +..+. .|+-.|+..|..
T Consensus 5 ~~~~~~C~IC~~~~~---~Pv~~--~CgH~fc~~Ci~ 36 (78)
T 1t1h_A 5 FPEYFRCPISLELMK---DPVIV--STGQTYERSSIQ 36 (78)
T ss_dssp CSSSSSCTTTSCCCS---SEEEE--TTTEEEEHHHHH
T ss_pred CcccCCCCCcccccc---CCEEc--CCCCeecHHHHH
Confidence 456789999998632 34333 588888888864
No 249
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=30.24 E-value=8.5 Score=34.72 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=44.6
Q ss_pred CCCCccchhhhhccCC-----CCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcC-CCCCeEEEEEcCCCCCc-cccc
Q psy2279 714 HTFEQLQLVWAKCRGY-----PWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANN-YTEPVYLVLFFDTKRTW-QWLP 786 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~-----p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~-~~~~~~~v~ffd~~~~~-~w~~ 786 (830)
+.|+.|+-|++. .|= =||.|.|++-+.-. ++. .+...|+|.|.+=..+| -|||
T Consensus 18 ~~F~~GEkVLc~-hgd~~k~~~lYeAKIl~v~~~~-------------------~~~g~~~~~Y~VHY~GWn~~wDEWV~ 77 (110)
T 3m9p_A 18 FKFHSGEKVLCF-EPDPTKARVLYDAKIVDVIVGK-------------------DEKGRKIPEYLIHFNGWNRSWDRWAA 77 (110)
T ss_dssp CCSCTTCEEEEE-CSCTTSCCCEEEEEEEEEEEEE-------------------CTTCCEEEEEEEEETTSCGGGCEEEE
T ss_pred CcccCCCEEEEE-cCCCCCCCCceeeEEEEEEecc-------------------CcccccceEEEEEECCCCcchhhccC
Confidence 679999999986 442 47999999852200 000 11357999999988899 6999
Q ss_pred CCCcccCCC
Q psy2279 787 RNKLEPLGI 795 (830)
Q Consensus 787 ~~~~~~l~~ 795 (830)
.+.|..++.
T Consensus 78 e~rllk~~e 86 (110)
T 3m9p_A 78 EDHVLRDTD 86 (110)
T ss_dssp GGGEEECCH
T ss_pred HhhhhcCCH
Confidence 999888763
No 250
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=30.11 E-value=23 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCcccccccCCCcCC-------------CCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQN-------------SNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~-------------~n~iv~Cd~C~~~vHq~CyG 168 (830)
++..|+||...-.+. .+..+.--.|+-.||..|..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~ 83 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 83 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH
Confidence 467899998753211 12234555899999999964
No 251
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=29.82 E-value=33 Score=23.91 Aligned_cols=26 Identities=23% Similarity=0.861 Sum_probs=18.5
Q ss_pred CCCceeeeccCCCC-CCCcccccCCCC
Q psy2279 173 PEGQWLCRRCLHTP-SRAVDCVLCPNN 198 (830)
Q Consensus 173 peg~W~C~~C~~~~-~~~~~C~lC~~~ 198 (830)
..|+|.|..|.+.. .....|.-|...
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCCCcccCCCCCccccccccccccCCc
Confidence 36899999998642 345678888643
No 252
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.47 E-value=19 Score=24.94 Aligned_cols=24 Identities=25% Similarity=0.790 Sum_probs=17.2
Q ss_pred CCceeeeccCCC-CCCCcccccCCC
Q psy2279 174 EGQWLCRRCLHT-PSRAVDCVLCPN 197 (830)
Q Consensus 174 eg~W~C~~C~~~-~~~~~~C~lC~~ 197 (830)
.|+|.|..|... -.....|.-|..
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~ 27 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGA 27 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCC
T ss_pred CCCCCcCcCcCCcChhcceecCCCC
Confidence 489999999864 234467888864
No 253
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=28.91 E-value=12 Score=34.17 Aligned_cols=33 Identities=30% Similarity=0.843 Sum_probs=0.0
Q ss_pred cccccccCCCCcceeeecC--------------CCCCcccchhhhhh
Q psy2279 246 LTCYVCKQRGVGACIQCHK--------------TNCYAAFHVTCAQQ 278 (830)
Q Consensus 246 l~C~iC~~~g~GacIqC~~--------------~~C~~~fHvtCA~~ 278 (830)
-.|.||...-...|+.|.. ..|...||..|...
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~ 95 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 95 (117)
T ss_dssp -----------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHH
Confidence 3799998865567777764 26999999999854
No 254
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=28.32 E-value=46 Score=27.06 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCCccchhhhhccCC-CCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCccc
Q psy2279 714 HTFEQLQLVWAKCRGY-PWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEP 792 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~-p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~ 792 (830)
..|+.||.|.||--|= -.|||.|..-+ ...++|+|.|=| .|--=|..+.|+|
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSit-------------------------s~~~~Y~VkfKd--gT~e~L~~kDIKp 63 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHD-------------------------STSQLYTVKYKD--GTELELKENDIKS 63 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEE-------------------------TTTTEEEEECTT--SCEEEEETTTEEC
T ss_pred eEeecCCEEEEEccCCccceEEEEEEec-------------------------cCCceEEEEecC--CCEEEechhcccc
Confidence 4688999999997653 35899998742 346789999987 6776677777777
Q ss_pred CC
Q psy2279 793 LG 794 (830)
Q Consensus 793 l~ 794 (830)
.-
T Consensus 64 ~~ 65 (68)
T 2dig_A 64 GP 65 (68)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 255
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=27.72 E-value=14 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.482 Sum_probs=26.8
Q ss_pred CCCCcccccccCCCcC--CCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQ--NSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~--~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.+++..|.||.+.-.+ .....+..-.|+-.||..|..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~ 45 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 45 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHH
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHH
Confidence 3567889999975322 134556677899999999975
No 256
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.34 E-value=21 Score=28.53 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=28.1
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCL 183 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~ 183 (830)
...++..|.||.+... + .--.|+-.||..|...-. .....|+.|.
T Consensus 11 ~~~~~~~C~IC~~~~~---~---~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr 55 (70)
T 2ecn_A 11 QLTDEEECCICMDGRA---D---LILPCAHSFCQKCIDKWS--DRHRNCPICR 55 (70)
T ss_dssp CCCCCCCCSSSCCSCC---S---EEETTTEEECHHHHHHSS--CCCSSCHHHH
T ss_pred cCCCCCCCeeCCcCcc---C---cccCCCCcccHHHHHHHH--HCcCcCCCcC
Confidence 3456789999998643 2 234688889999975321 1334455554
No 257
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=27.16 E-value=27 Score=24.55 Aligned_cols=25 Identities=40% Similarity=0.954 Sum_probs=17.9
Q ss_pred CCCceeeeccCCC-CCCCcccccCCC
Q psy2279 173 PEGQWLCRRCLHT-PSRAVDCVLCPN 197 (830)
Q Consensus 173 peg~W~C~~C~~~-~~~~~~C~lC~~ 197 (830)
.+|+|-|..|... ......|+.|..
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACET 29 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCC
T ss_pred CCCceeCCcccCCCccccCEEcccCC
Confidence 4689999999875 345668998853
No 258
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=26.79 E-value=15 Score=31.11 Aligned_cols=34 Identities=26% Similarity=0.563 Sum_probs=22.1
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.++++..|.||.+.-. +.+ .-..|+-.|+..|..
T Consensus 9 ~~~~~~~C~IC~~~~~---~p~-~~~~CgH~fC~~Ci~ 42 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT---DAV-VIPCCGNSYCDECIR 42 (92)
T ss_dssp CCCTTTEETTTTEECS---SCE-ECTTTCCEECHHHHH
T ss_pred cCCcCCCCCCCChhhc---Cce-ECCCCCCHHHHHHHH
Confidence 4567789999997532 333 333478777777764
No 259
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.72 E-value=14 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.592 Sum_probs=27.4
Q ss_pred CCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccC
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCL 183 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~ 183 (830)
++..|.||.+....+....+.=..|+-.||..|..--.. .+...|+.|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr 50 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGAGNCPECG 50 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-TTSSSCTTTC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-cCCCcCCCCC
Confidence 467899999821112222222258999999999753321 2333455554
No 260
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=26.55 E-value=45 Score=27.17 Aligned_cols=55 Identities=31% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCCC--c
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRNK--L 790 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~~--~ 790 (830)
..|+.|.-|=|...--|||||.|++=+ ..+..++|.|-+-..+| .|++.+. |
T Consensus 11 ~~F~vGmkLEa~d~~~p~~~AtV~~v~-------------------------~~~~~~~VhfdGw~~~~D~W~~~dS~~i 65 (69)
T 3sd4_A 11 ISFEVGAQLEARDRLKNWYPAHIEDID-------------------------YEEGKVLIHFKRWNHRYDEWFCWDSPYL 65 (69)
T ss_dssp CCCSTTCEEEEECTTSCEEEEEEEEEE-------------------------TTTTEEEEEETTSCGGGCEEEETTCTTE
T ss_pred CCcCCCCEEEEEECCCCccccEEEEEe-------------------------ccCCEEEEEeCCCCCCCCEEEcCCCCCe
Confidence 468888888887788899999999731 12346899998766666 6887543 5
Q ss_pred ccC
Q psy2279 791 EPL 793 (830)
Q Consensus 791 ~~l 793 (830)
.|+
T Consensus 66 ~Pv 68 (69)
T 3sd4_A 66 RPL 68 (69)
T ss_dssp ECC
T ss_pred eEC
Confidence 554
No 261
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.58 E-value=18 Score=28.64 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=28.9
Q ss_pred CCCCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCCceeeeccCC
Q psy2279 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH 184 (830)
Q Consensus 131 ~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~ 184 (830)
...++..|.||.+.-. +..+ -.|+-.||..|+..-. ..+...|+.|..
T Consensus 11 ~~~~~~~C~IC~~~~~---~p~~--~~CgH~fC~~Ci~~~~-~~~~~~CP~Cr~ 58 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLC---SPKQ--TECGHRFCESCMAALL-SSSSPKCTACQE 58 (66)
T ss_dssp SCCCCEECTTTCCEES---SCCC--CSSSCCCCHHHHHHHH-TTSSCCCTTTCC
T ss_pred cCCcCCCCCCCChHhc---CeeE--CCCCCHHHHHHHHHHH-HhCcCCCCCCCc
Confidence 3456789999987532 3333 3788888888875322 123334555543
No 262
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=25.56 E-value=14 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=24.8
Q ss_pred CCcccccccCCCcCC--CCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQN--SNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~--~n~iv~Cd~C~~~vHq~CyG 168 (830)
++..|.||.+.-.+. ....+....|+-.||..|..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~ 38 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 38 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHH
Confidence 467899999853221 23455666899999999975
No 263
>2jzk_A Cyanovirin-N homolog; CVNH, antiviral protein, carbohydrate binding protein; NMR {Tuber borchii}
Probab=25.56 E-value=24 Score=31.44 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=22.5
Q ss_pred CcCcccccccccccccCCCceeeeccCCC
Q psy2279 157 MCNLAVHQDCYGVPYIPEGQWLCRRCLHT 185 (830)
Q Consensus 157 ~C~~~vHq~CyGi~~ipeg~W~C~~C~~~ 185 (830)
+|++.||++|-.|.....|.+|.-.|...
T Consensus 1 ~~~~~F~~Sc~~i~l~~~g~~L~A~C~~~ 29 (106)
T 2jzk_A 1 GSHMSYADSSRNAVLTNGGRTLRAECRNA 29 (106)
T ss_dssp ---CCGGGGEEEEEEETTTTEEEEEEECT
T ss_pred CCCCChhhhcCCeEEECCCcEEEEEEECC
Confidence 58999999999988767888999999854
No 264
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=25.51 E-value=53 Score=26.15 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=32.7
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccccccccCCC--ceeeeccC
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEG--QWLCRRCL 183 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyGi~~ipeg--~W~C~~C~ 183 (830)
++...|.||....-. ++.=-.|.-|.+-+-.-|-|-..+... -|.|..|.
T Consensus 7 ~d~~~C~iC~KTKFA-DG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 7 GDAPTCGICHKTKFA-DGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCR 58 (62)
T ss_dssp SCCCCCSSSSCSCCC-SSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHH
T ss_pred CCcchhhhhccceec-cCCCccccccCCeeecccCCEeeecCCeEEEEehhhh
Confidence 567899999864332 233446777777777777665444433 59999886
No 265
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=25.43 E-value=38 Score=26.63 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+++..|.||.+.-. +. +..-.|+-.||..|..
T Consensus 3 ~~~~~C~IC~~~~~---~~-~~~~~C~H~fc~~Ci~ 34 (68)
T 1chc_A 3 TVAERCPICLEDPS---NY-SMALPCLHAFCYVCIT 34 (68)
T ss_dssp CCCCCCSSCCSCCC---SC-EEETTTTEEESTTHHH
T ss_pred CCCCCCeeCCcccc---CC-cEecCCCCeeHHHHHH
Confidence 45778999998632 22 3456799999999974
No 266
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.27 E-value=49 Score=26.53 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
..|..|+=|+|.=+-==.||+-|..-+. .....+|+|+|+...| +--+.|.++
T Consensus 6 ~~f~eGqdVLarWsDGlfYlgtV~kV~~-------------------------~~~~ClV~FeD~s~~w--v~~kdi~~~ 58 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTDGLYYLGKIKRVSS-------------------------SKQSCLVTFEDNSKYW--VLWKDIQHA 58 (63)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEECCCCS-------------------------TTSEEEEEETTSCEEE--EEGGGEECC
T ss_pred cceecCCEEEEEecCCCEEEEEEEEEec-------------------------CCCEEEEEEccCceeE--EEeeccccc
Confidence 4678899899885555689999987633 2456999999997766 334666665
Q ss_pred CC
Q psy2279 794 GI 795 (830)
Q Consensus 794 ~~ 795 (830)
++
T Consensus 59 ~~ 60 (63)
T 2e5q_A 59 GV 60 (63)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 267
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.98 E-value=40 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.631 Sum_probs=29.2
Q ss_pred cCcccccccCCCCcceeeecCCCCCcccchhhhhhc
Q psy2279 244 WKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQA 279 (830)
Q Consensus 244 ~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~a 279 (830)
...+|.+|.. .|..|-|++..|...|=+.|..+.
T Consensus 78 ~~~yC~wC~~--Gg~l~~Cdn~~C~r~FC~~CI~~n 111 (159)
T 3a1b_A 78 YQSYCTICCG--GREVLMCGNNNCCRCFCVECVDLL 111 (159)
T ss_dssp SBSSCTTTSC--CSEEEECSSTTTCCEEEHHHHHHH
T ss_pred CcceeeEecC--CCeEEeeCCCCCCCchhHHHHHHh
Confidence 3468999997 489999999999999999999553
No 268
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=38 Score=25.76 Aligned_cols=27 Identities=33% Similarity=0.771 Sum_probs=20.9
Q ss_pred cCCCceeeeccCCCC-CCCcccccCCCC
Q psy2279 172 IPEGQWLCRRCLHTP-SRAVDCVLCPNN 198 (830)
Q Consensus 172 ipeg~W~C~~C~~~~-~~~~~C~lC~~~ 198 (830)
.++|.|-|..|.... .....|+-|...
T Consensus 7 ~~~g~W~C~~C~v~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNKPEAIKCVACETP 34 (47)
T ss_dssp CCSSSEECSSSCCEECSSCSBCSSSCCB
T ss_pred CCCCceECCeeeccCccCCceecCcCCC
Confidence 468999999998753 456789999754
No 269
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=23.43 E-value=29 Score=28.14 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=41.2
Q ss_pred CCCCccchhhhhccCC-CCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCccc
Q psy2279 714 HTFEQLQLVWAKCRGY-PWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEP 792 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~-p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~ 792 (830)
..|+.||.|.||-.|= -.|||.|..-+ ...++|+|.|=| .|--=|..+.|+|
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~-------------------------s~~~~Y~V~fKd--gT~e~L~~kDIkp 60 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYD-------------------------DASHLYTVKYKD--GTELALKESDIRL 60 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEE-------------------------TTTTEEEEEETT--SCEEEEEGGGEEC
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEec-------------------------cCCceEEEEecC--CCEEeechhcccc
Confidence 4688999999998663 35899998752 356789999987 6776777788887
Q ss_pred C
Q psy2279 793 L 793 (830)
Q Consensus 793 l 793 (830)
+
T Consensus 61 ~ 61 (66)
T 2l8d_A 61 Q 61 (66)
T ss_dssp S
T ss_pred c
Confidence 7
No 270
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=23.40 E-value=12 Score=33.20 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=46.5
Q ss_pred CCCCccchhhhhcc----CCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCC
Q psy2279 714 HTFEQLQLVWAKCR----GYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRN 788 (830)
Q Consensus 714 ~~~~~~~~v~ak~~----g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~ 788 (830)
+.|+.|+-|++-=. |-=+|.|.|++-+... + ....+...|+|.|-+=..+| -|||.+
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~------------~------~~~~~~~~Y~VHY~GWn~rwDEWV~ed 79 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR------------N------EHGLRFYEYKIHFQGWRPSYDRAVRAT 79 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE------------C------TTSCEEEEEEEEETTSCGGGCEEECGG
T ss_pred CcccCCCEEEEEecCCCCCCcceEeEEEEEEecC------------C------ccccCceEEEEEeCCCCcCceeecCHH
Confidence 67999999998653 5567999999853211 0 00123457999999988899 899999
Q ss_pred CcccCCC
Q psy2279 789 KLEPLGI 795 (830)
Q Consensus 789 ~~~~l~~ 795 (830)
.|..++.
T Consensus 80 Rilk~~e 86 (101)
T 3m9q_A 80 VLLKDTE 86 (101)
T ss_dssp GEEECCH
T ss_pred HcccCCH
Confidence 8887763
No 271
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=22.33 E-value=35 Score=38.32 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.8
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
.....|+.|...--.-..+-+.|..|++.+|..|..
T Consensus 218 ~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~ 253 (463)
T 3cxl_A 218 RGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSK 253 (463)
T ss_dssp SSCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHT
T ss_pred CCCCcchhhhhhhhhHHhcCeeccccCccccccccc
Confidence 346789999875332345679999999999999963
No 272
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.31 E-value=85 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=17.3
Q ss_pred CCCcccccccCCCcCCCCceEEecCcCcccccccc
Q psy2279 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCY 167 (830)
Q Consensus 133 ~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~Cy 167 (830)
+++..|.||.+.-. +..+ -.|+-.|+..|.
T Consensus 4 ~~~~~C~IC~~~~~---~p~~--l~CgH~fC~~Ci 33 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---CPKL--LPCLHTLCSGCL 33 (56)
T ss_dssp CCCSSCSSSCSSCB---CCSC--STTSCCSBTTTC
T ss_pred ccCCCceEeCCccC---CeEE--cCCCCcccHHHH
Confidence 45678999987532 2211 246655655554
No 273
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.22 E-value=59 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.714 Sum_probs=21.2
Q ss_pred cCCCceeeeccCCCC-CCCcccccCCCCC
Q psy2279 172 IPEGQWLCRRCLHTP-SRAVDCVLCPNNG 199 (830)
Q Consensus 172 ipeg~W~C~~C~~~~-~~~~~C~lC~~~g 199 (830)
.+++.|-|..|.+.. .....|..|....
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~pr 35 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVRK 35 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCcC
Confidence 467899999999753 3456899998653
No 274
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.13 E-value=50 Score=26.91 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=40.1
Q ss_pred CCCCccchhhhhccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCcccccCCCcccC
Q psy2279 714 HTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPL 793 (830)
Q Consensus 714 ~~~~~~~~v~ak~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~~w~~~~~~~~l 793 (830)
+.|..|+=|+|.=+-==.||+-|..-+. .....+|+|+|+.-.| +--+.|.++
T Consensus 8 ~~f~eGqdVLarWsDGlfYlGtV~kV~~-------------------------~~~~ClV~FeD~s~~w--v~~kdi~~~ 60 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDGLLYLGTIKKVDS-------------------------AREVCLVQFEDDSQFL--VLWKDISPA 60 (68)
T ss_dssp CCCCTTCEEEEECTTSSEEEEEEEEEET-------------------------TTTEEEEEETTTEEEE--EETTTEECC
T ss_pred cccccCCEEEEEecCCcEEEeEEEEEec-------------------------CCcEEEEEEccCCeee--eeeeccccc
Confidence 5688899898876665678999886422 2456999999985554 555778877
Q ss_pred CC
Q psy2279 794 GI 795 (830)
Q Consensus 794 ~~ 795 (830)
++
T Consensus 61 ~~ 62 (68)
T 2e5p_A 61 AL 62 (68)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 275
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.84 E-value=51 Score=36.15 Aligned_cols=35 Identities=14% Similarity=0.535 Sum_probs=30.0
Q ss_pred ccCcccccccCCCCcceeeecCCCCCcccchhhhhhc
Q psy2279 243 RWKLTCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQA 279 (830)
Q Consensus 243 r~~l~C~iC~~~g~GacIqC~~~~C~~~fHvtCA~~a 279 (830)
.+...|.+|.. .|..+-|++..|...|-..|..+.
T Consensus 91 G~~~yCr~C~~--Gg~l~~Cdn~~C~r~FC~~Ci~~n 125 (386)
T 2pv0_B 91 GYQSYCSICCS--GETLLICGNPDCTRCYCFECVDSL 125 (386)
T ss_dssp SSBCSCTTTCC--CSSCEECCSTTCCCEECHHHHHHH
T ss_pred CCcccceEcCC--CCeEEEeCCCCCCcchHHHHHHHh
Confidence 34568999997 489999999999999999999654
No 276
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=20.82 E-value=15 Score=33.09 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=44.4
Q ss_pred CCCCccchhhh----hccCCCCCceEeeCCCCCCCcccCCCCCCCCcHHHHhhhcCCCCCeEEEEEcCCCCCc-ccccCC
Q psy2279 714 HTFEQLQLVWA----KCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTKRTW-QWLPRN 788 (830)
Q Consensus 714 ~~~~~~~~v~a----k~~g~p~~p~~i~~~~~p~g~~h~~~~~~~pp~~~~~~~~~~~~~~~~v~ffd~~~~~-~w~~~~ 788 (830)
..|+.|+-|++ .-+|--.|-|.|++-+.-. -....+...|+|.|-+=..+| -||+.+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~------------------~~~~~~~~~Y~VHY~GWn~~WDEWV~~d 79 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK------------------DEKGRKIPEYLIHFNGWNRSWDRWAAED 79 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE------------------CTTCCEEEEEEEEETTSCGGGCEEEEGG
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEecc------------------CCcCCcccEEEEEECCcCcchhhccChh
Confidence 67899999887 2236567999999742200 000112346999999999999 899999
Q ss_pred CcccCC
Q psy2279 789 KLEPLG 794 (830)
Q Consensus 789 ~~~~l~ 794 (830)
.|..++
T Consensus 80 rllk~n 85 (110)
T 3oa6_A 80 HVLRDT 85 (110)
T ss_dssp GEEECC
T ss_pred hhhcCC
Confidence 988775
No 277
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=20.61 E-value=26 Score=31.64 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=14.3
Q ss_pred eeeecCCCCCcccchhhh
Q psy2279 259 CIQCHKTNCYAAFHVTCA 276 (830)
Q Consensus 259 cIqC~~~~C~~~fHvtCA 276 (830)
+|+|. .|..+||..|-
T Consensus 2 mi~c~--~c~~w~H~~c~ 17 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCE 17 (140)
T ss_dssp CCCCS--CCSSCHHHHHC
T ss_pred ccccc--cCCCccCCccc
Confidence 78998 49999999996
No 278
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.44 E-value=43 Score=26.86 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=24.8
Q ss_pred CCCCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 130 ~~~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
...+++..|.||.+.-. .-+.-..|+-.||..|.-
T Consensus 10 ~~~~~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~ 44 (72)
T 2djb_A 10 SELTPYILCSICKGYLI----DATTITECLHTFCKSCIV 44 (72)
T ss_dssp CCCCGGGSCTTTSSCCS----SCEECSSSCCEECHHHHH
T ss_pred hhcCCCCCCCCCChHHH----CcCEECCCCCHHHHHHHH
Confidence 34566789999987632 244556889888888864
No 279
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=20.19 E-value=29 Score=30.39 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
++++..|.||.+.- ..-+....|+-.||..|..
T Consensus 12 ~~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~ 44 (108)
T 2ckl_A 12 LNPHLMCVLCGGYF----IDATTIIECLHSFCKTCIV 44 (108)
T ss_dssp HGGGTBCTTTSSBC----SSEEEETTTCCEEEHHHHH
T ss_pred cCCcCCCccCChHH----hCcCEeCCCCChhhHHHHH
Confidence 34678999998753 2345556788888888864
No 280
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=20.16 E-value=25 Score=32.43 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=20.4
Q ss_pred CCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 134 ~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
++..|.||.+.-. +..+ . .|+-.||..|..
T Consensus 52 ~~~~C~iC~~~~~---~~~~-~-~CgH~fc~~Ci~ 81 (138)
T 4ayc_A 52 NELQCIICSEYFI---EAVT-L-NCAHSFCSYCIN 81 (138)
T ss_dssp HHSBCTTTCSBCS---SEEE-E-TTSCEEEHHHHH
T ss_pred ccCCCcccCcccC---CceE-C-CCCCCccHHHHH
Confidence 4578999997632 3333 2 588888888864
No 281
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=20.05 E-value=21 Score=31.53 Aligned_cols=41 Identities=32% Similarity=0.716 Sum_probs=25.7
Q ss_pred EEecCcCcccccccccccccCCCceeeeccCCC--CCCCcccccCC
Q psy2279 153 LFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHT--PSRAVDCVLCP 196 (830)
Q Consensus 153 v~Cd~C~~~vHq~CyGi~~ipeg~W~C~~C~~~--~~~~~~C~lC~ 196 (830)
.|||.|++-+. -|| ..||-+.-||-.|... ....-.|..|.
T Consensus 2 hfC~~C~~Pi~--iyg-RmIPCkHvFCydCa~~~~~~~~k~Cp~C~ 44 (101)
T 3vk6_A 2 HFCDKCGLPIK--VYG-RMIPCKHVFCYDCAILHEKKGDKMCPGCS 44 (101)
T ss_dssp CBCTTTCSBCS--EEE-EEETTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred eecCccCCCeE--EEe-eeccccccHHHHHHHHHHhccCCCCcCcC
Confidence 47888887763 455 3467777888888742 12234566665
No 282
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=20.05 E-value=48 Score=38.95 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=28.4
Q ss_pred CCCCcccccccCCCcCCCCceEEecCcCccccccccc
Q psy2279 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYG 168 (830)
Q Consensus 132 ~~~d~~C~VC~~~e~~~~n~iv~Cd~C~~~vHq~CyG 168 (830)
+.....|++|...-..-..+-+.|..|+..||..|..
T Consensus 110 ~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 146 (674)
T 3pfq_A 110 YSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM 146 (674)
T ss_dssp CSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTS
T ss_pred CCCCCCCCccccccchhhcCccccccCCcchhhhhhh
Confidence 3456799999775333335789999999999999974
Done!