RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2279
(830 letters)
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural
genomics, structural genomics consortium, SGC, PW
domain, protein binding; 1.90A {Homo sapiens} PDB:
3lyi_A*
Length = 158
Score = 161 bits (408), Expect = 3e-46
Identities = 69/143 (48%), Positives = 89/143 (62%), Gaps = 5/143 (3%)
Query: 689 NSSCSECSSSCDSSDSESGSSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPL-GYIH 747
+ S E L+LVWAKCRGYP YPALII+P+MP G +H
Sbjct: 10 GRENLYFQGDYNGSGRSLLLPFEDRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLH 69
Query: 748 NGVPIPSPPEDVLALANNYT----EPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIK 803
NGVPIP PP DVL L E ++LVLFFD KRTWQWLPR+K+ PLG+ D +D++K
Sbjct: 70 NGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLPRDKVLPLGVEDTVDKLK 129
Query: 804 LMESRKPADRKAVKKAYQEALVH 826
++E RK + RK+V+ AY A++H
Sbjct: 130 MLEGRKTSIRKSVQVAYDRAMIH 152
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 156 bits (396), Expect = 1e-44
Identities = 50/132 (37%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Query: 459 EACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKV 518
+ ++L PL LL ++D ++ +D IF +PV + EVPDY D IK PMD TM ++
Sbjct: 4 QVAMELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRL 63
Query: 519 KANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFD 578
+A Y +L +FE DF+L+++NC+ YN +DT+FY+A ++++ GG ++ QA + ++ G +
Sbjct: 64 EAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLE 123
Query: 579 Q-IGSILPGTSA 589
+ G LP A
Sbjct: 124 EASGMHLPERPA 135
>3l42_A Peregrin; transcription regulation, histone H3 acetylation,
chromatin modification, structural genomics, structural
genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB:
3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Length = 130
Score = 151 bits (383), Expect = 3e-43
Identities = 69/116 (59%), Positives = 82/116 (70%), Gaps = 5/116 (4%)
Query: 716 FEQLQLVWAKCRGYPWYPALIINPQMPL-GYIHNGVPIPSPPEDVLALANNYT----EPV 770
+ L LVWAKCRGYP YPALII+P+MP G H+GVPIP PP +VL L T E +
Sbjct: 6 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHL 65
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVH 826
YLVLFFD KRTWQWLPR KL PLG+ +LD+ K++E RK RK+V+ AY AL H
Sbjct: 66 YLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQH 121
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 148 bits (375), Expect = 5e-42
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 464 IKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQY 523
++ PL L QL+ ++ +D F PV P Y+ +IK PMD +TM K+K N Y
Sbjct: 4 VEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDY 63
Query: 524 LSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQA 568
S+E+ +++F LM N + YN+ +TI+YKA K+ G +++Q
Sbjct: 64 QSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQE 108
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 147 bits (374), Expect = 6e-42
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSL 526
+ LL + ++ ++ +DTG+IF EPV + EVPDY D IK+PMD TM ++A +YL+
Sbjct: 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNF 65
Query: 527 EDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFD 578
+DFE DFNL+V NCL YN KDTIFY+A +++++ GGA++ QA + G
Sbjct: 66 DDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGSG 117
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 145 bits (369), Expect = 4e-41
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
+ P+ LL + ++ +D F PV P Y+ +IK PMD TM +K+ AN+Y
Sbjct: 10 ESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYK 69
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQA 568
S+ +F+ DF LM +N +TYN DT++YK K+ G ++++
Sbjct: 70 SVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKE 113
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 131 bits (331), Expect = 4e-36
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
K P ++ + ++ ++ FL+PV+ EVPDY D IK+PMDL+TM K+++N+Y
Sbjct: 10 KRGPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQ 69
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+EDF D L+ NC YN ++T +YK ++++
Sbjct: 70 KMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKF 105
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 129 bits (325), Expect = 3e-35
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
L L + + +F +PVD EVPDY VIKQPMDL+++ +K+ ++YL
Sbjct: 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYL 66
Query: 525 SLEDFENDFNLMVENCLTYNEK----DTIFYKAGIKMKQVGGALINQA 568
+++D+ D +L+ N L YN D + ++ A+I +
Sbjct: 67 TVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEE 114
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 128 bits (324), Expect = 3e-35
Identities = 30/99 (30%), Positives = 55/99 (55%)
Query: 462 TMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKAN 521
+M + L + L L+ IK+ + F+EPV E PDY +VI+ P+DL TMT ++++
Sbjct: 1 SMEDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSR 60
Query: 522 QYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y++ + F D ++ NC YN D+ + + +++
Sbjct: 61 YYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKF 99
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 126 bits (319), Expect = 1e-34
Identities = 30/98 (30%), Positives = 54/98 (55%)
Query: 463 MIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQ 522
+ +L+ + + +++D++KA FLEPVD P+Y +IK PMD+++M K+
Sbjct: 11 LFELDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGL 70
Query: 523 YLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y + E+F ND M NC YN + + + K +++
Sbjct: 71 YCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERC 108
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 125 bits (315), Expect = 8e-34
Identities = 25/114 (21%), Positives = 61/114 (53%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
K+ + +++ D R ++F++ E+P+Y ++I++P+D + +++ ++Y
Sbjct: 15 KMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR 74
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFD 578
SL D E D L+ +N T+N + ++ Y+ I ++ V ++ + K + G +
Sbjct: 75 SLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEE 128
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 120 bits (302), Expect = 3e-32
Identities = 32/96 (33%), Positives = 54/96 (56%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
+ +L ++ ++ + FL PV++ VP Y VIK+PMD +T+ K+ + QY
Sbjct: 10 DDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYP 69
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+LE F D L+ +NC T+NE D+ +AG M++
Sbjct: 70 NLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKY 105
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 117 bits (295), Expect = 3e-31
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 465 KLNPLNSLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKV 518
+ P+ L ++ + +K R IFL E+PDY IK+PMD+ + + +
Sbjct: 12 YMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHM 71
Query: 519 KANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
AN+Y ++ DF +M N TYNE +++ YK + + +V
Sbjct: 72 MANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKV 113
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 116 bits (292), Expect = 2e-30
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLED 528
L++++ Q + A F PV+ VPDY VI PMDL T+ + ++Y S E
Sbjct: 34 LDNIVTQKM---MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRES 90
Query: 529 FENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTL 572
F +D NL++ N + YN ++ + K ++ V + + + L
Sbjct: 91 FLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 134
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 120 bits (302), Expect = 3e-30
Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 12/202 (5%)
Query: 376 YWTIKRQLRNGVPLLRRLQSSHQARRDEHCK----IMSNTPE-NGNITELYHELKYWQCL 430
Y+ I + + L ++ R+E + I+ N+ NG L + L
Sbjct: 80 YYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 139
Query: 431 RQDLERARLLCELVRKREKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFL 490
+ + + ++ A + I L + + A F
Sbjct: 140 CDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFI-------LDNIVTQKMMAVPDSWPFH 192
Query: 491 EPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIF 550
PV+ VPDY VI PMDL T+ + ++Y S E F +D NL++ N + YN ++ +
Sbjct: 193 HPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY 252
Query: 551 YKAGIKMKQVGGALINQAAKTL 572
K ++ V + + + L
Sbjct: 253 TKTAQEIVNVCYQTLTEYDEHL 274
Score = 106 bits (266), Expect = 2e-25
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 466 LNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLS 525
+ L+S+L +I+ ++ F PV+ V DY +I +PMDL T+ V+ Y S
Sbjct: 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPS 104
Query: 526 LEDFENDFNLMVENCLTYNEKDTIFYKAGIKM 557
E+F L+V+N TYN + M
Sbjct: 105 REEFREHLELIVKNSATYNGPKHSLTQISQSM 136
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 113 bits (284), Expect = 3e-30
Identities = 48/72 (66%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 127 QSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTP 186
SQ +ID++AVC IC DGE QNSNVILFCDMCNLAVHQ+CYGVPYIPEGQWLCR CL +
Sbjct: 17 SSQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76
Query: 187 SRAVDCVLCPNN 198
+R ++
Sbjct: 77 ARPA-LEHHHHH 87
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 116 bits (292), Expect = 3e-30
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 428 QCLRQDLERARLLCELVRKREKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGD 487
+C+ A L+ E V + + + L +++ ++A
Sbjct: 36 RCVGILQSEAELIDEYVCPQCQSTED----AMTVLTPLTEKDYEGLKRVLRSLQAHKMAW 91
Query: 488 IFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKD 547
FLEPVD + PDY VIK+PMDL TM +V+ Y L +F D + +NC YN D
Sbjct: 92 PFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSD 151
Query: 548 TIFYKAGIKMKQV 560
+ FY+ ++
Sbjct: 152 SPFYQCAEVLESF 164
Score = 35.2 bits (81), Expect = 0.041
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 14/109 (12%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYI---PEGQWLCRRCLHTPSRA 189
D + CIC S + CD C H C G+ +++C +C T
Sbjct: 5 SDTKLYCICKTP-EDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAM 63
Query: 190 VDCVLCPNNGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPIDSIEA 238
D V+ +L + FLEP+D +A
Sbjct: 64 TVLTPLTEK-------DYEGLKRVLRSLQAHK---MAWPFLEPVDPNDA 102
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 113 bits (285), Expect = 7e-30
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 469 LNSLLLQLIDLIKA--RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSL 526
+ L + D R ++F+ PDY +V+ QP+DL + K+K +Y +
Sbjct: 10 CHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDV 69
Query: 527 EDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
DF L+ N +Y + D+ YKA K+ +
Sbjct: 70 NLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDL 103
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 113 bits (285), Expect = 8e-30
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
L L L + + +IF +PV DY +VIK+PMDL+T+ K+ + YL
Sbjct: 9 TLRELRLFLRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYL 63
Query: 525 SLEDFENDFNLMVENCLTYNEKDT----IFYKAGIKMKQVGGALI 565
+ +DF D +L+ N L YN I +K A+I
Sbjct: 64 TAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAII 108
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 118 bits (296), Expect = 9e-30
Identities = 31/120 (25%), Positives = 51/120 (42%)
Query: 477 IDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLM 536
+ A F PV+ VPDY VI PMDL T+ + ++Y S E F +D NL+
Sbjct: 146 TQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLI 205
Query: 537 VENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQIGSILPGTSAKGVNSSD 596
+ N + YN ++ + K ++ V + + + L D + + S D
Sbjct: 206 LANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELESLD 265
Score = 108 bits (272), Expect = 1e-26
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
+ L+S+L +I+ ++ F PV+ V DY +I +PMDL T+ V+ Y
Sbjct: 11 PMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYP 70
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
S E+F L+V+N TYN + M +
Sbjct: 71 SREEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 106
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 113 bits (284), Expect = 1e-29
Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
++N + ++ D R ++F++ E+P+Y ++I++P+D + +++ ++Y
Sbjct: 17 QMNAIIDTVINYKDS-SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR 75
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAG 576
SL D E D L+ N T+N + + Y+ I ++ V A ++ +G
Sbjct: 76 SLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSV----FKSARQSGPSSG 123
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 112 bits (281), Expect = 3e-29
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 464 IKLNPLNSLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNK 517
+ L +QL D +++ + + F + PDY IK P+ L + K
Sbjct: 13 LGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTK 72
Query: 518 VKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+K +Y +L+ E D NLM EN YN ++ YK +K++QV
Sbjct: 73 LKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQV 115
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 112 bits (282), Expect = 3e-29
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 456 KVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMT 515
++ + +L++LI + + F +PVD++E PDY D+I PMD T+
Sbjct: 9 RLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVR 68
Query: 516 NKVKANQYLSLEDFENDFNLMVENCLTYN-EKDTIFYKAGIKMKQV 560
++A Y S + D L+ N Y K + Y +++
Sbjct: 69 ETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAF 114
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 111 bits (280), Expect = 3e-29
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 473 LLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDFEND 532
+L++LI + + F +PVD++E PDY D+I PMD T+ + A Y S +F D
Sbjct: 15 CKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKD 74
Query: 533 FNLMVENCLTYNE-KDTIFYKAGIKMKQV 560
L+ N Y K + Y +++ +
Sbjct: 75 IRLIFSNAKAYTPNKRSKIYSMTLRLSAL 103
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 111 bits (279), Expect = 5e-29
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYL 524
N L LL ++ + F +PVD + +PDY +IK PMD+ T+ +++ N Y
Sbjct: 20 NQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYW 79
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+ ++ DFN M NC YN+ ++++
Sbjct: 80 NAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 115
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 111 bits (279), Expect = 8e-29
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYL 524
++ L +++L+ + R D+F+ + PDY +I +PMDL + + ++ ++Y
Sbjct: 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYA 87
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
E D LM N YNE+ + Y ++++
Sbjct: 88 GEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKL 123
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 111 bits (280), Expect = 9e-29
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYL 524
N L L ++ + F +PVD + +PDY +IKQPMD+ T+ +++ N Y
Sbjct: 31 NQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYW 90
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+ + DFN M NC YN+ ++++
Sbjct: 91 AASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKI 126
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 109 bits (275), Expect = 1e-28
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 465 KLNPLNSLLLQLID-LIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKAN 521
K L L+ ++ L + F +PVD +PDY D++K PMDL+T+ K+
Sbjct: 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTG 67
Query: 522 QYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
QY + +D LM N YN K + YK K+ +V
Sbjct: 68 QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEV 106
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 108 bits (273), Expect = 3e-28
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 469 LNSLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQ 522
L + ++ D I + + L + DY + I P+DL T+ ++
Sbjct: 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGY 69
Query: 523 YLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y ++E F+ D + N Y + + + ++++
Sbjct: 70 YKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKA 107
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 108 bits (272), Expect = 4e-28
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIE--VPDYADVIKQPMDLTTMTNKVKANQ 522
+L + +L ++ K F +PVDV + DY D+IK PMD++T+ +K+++ +
Sbjct: 10 QLKCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE 68
Query: 523 YLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y ++F D LM NC YN D K++ V
Sbjct: 69 YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 106 bits (266), Expect = 5e-28
Identities = 48/66 (72%), Positives = 54/66 (81%)
Query: 124 SHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCL 183
H Q +ID++AVC IC DGE QNSNVILFCDMCNLAVHQ+CYGVPYIPEGQWLCR CL
Sbjct: 5 HHHHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64
Query: 184 HTPSRA 189
+ +R
Sbjct: 65 QSRARP 70
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 108 bits (272), Expect = 5e-28
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 465 KLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIE--VPDYADVIKQPMDLTTMTNKVKANQ 522
+L + +L ++ K F +PVDV + DY D+IK PMD++T+ +K++A +
Sbjct: 23 QLKCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE 81
Query: 523 YLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y ++F D LM NC YN D K++ V
Sbjct: 82 YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 119
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 107 bits (270), Expect = 7e-28
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 469 LNSLLLQLIDLIKA------RDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQ 522
L +L QL++ I R ++F + ++ PDY +IK+P+DL T+ +++
Sbjct: 9 LKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGS 68
Query: 523 YLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y S+ D +L+ +N TYNE + +K +K++
Sbjct: 69 YKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKI 106
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 108 bits (272), Expect = 1e-27
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVI--EVPDYADVIKQPMDLTTMTNKVKANQYL 524
L QLI + + G IF + VD PDY DVIK PM + + K+K QY
Sbjct: 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYA 79
Query: 525 SLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+F D L+ +NC YN +++ G ++
Sbjct: 80 YPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETY 115
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 113 bits (284), Expect = 2e-27
Identities = 42/288 (14%), Positives = 86/288 (29%), Gaps = 25/288 (8%)
Query: 289 RDHSGVEPVVVQKLAYCDAHTPPDVQHRPRLPAPSDEKLKNA-RLVLAKKRVSVPTVSIP 347
+ G P +K + D + P + + L K L +
Sbjct: 41 KYLPGKHPKNQEKTPHVDYNAPLNPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIFKD 100
Query: 348 TIPP---ERVQDIAQLISVPKKSQLMNRLIAYWTIKRQLRNGVPLLRRLQSSHQARRDEH 404
I + I P ++ IK + D
Sbjct: 101 FIKLPSRKFHPQYYYKIQQP---------MSINEIKSRDYEYE------DGPSNFLLDVE 145
Query: 405 -----CKIMSNTPENGNITELYHELKYWQCLRQDLERARLLCELVRKREKMKRELIKVTE 459
C+ N ++ + + + + + + + + +
Sbjct: 146 LLTKNCQA-YNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLV 204
Query: 460 ACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVK 519
T K+N +L + F+E VD E+P+Y +++ PM L+ + ++
Sbjct: 205 DATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLE 264
Query: 520 ANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQ 567
QY + DF D L+ +N +N+ + YK + LI +
Sbjct: 265 IGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312
Score = 91.4 bits (226), Expect = 7e-20
Identities = 22/154 (14%), Positives = 55/154 (35%), Gaps = 3/154 (1%)
Query: 465 KLNPLNSLLLQLIDLI--KARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQ 522
+ N + +D++ K +D F++ P Y I+QPM + + ++
Sbjct: 75 HIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRDY-EY 133
Query: 523 YLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQIGS 582
+F D L+ +NC YNE D++ K +++ + + +A + +
Sbjct: 134 EDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVK 193
Query: 583 ILPGTSAKGVNSSDVVHMEETSKAENNKQEEKKN 616
+ + + + ++ +
Sbjct: 194 AKLLHYLNKLVDATEKKINQALLGASSPKNLDDK 227
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 110 bits (277), Expect = 7e-27
Identities = 25/151 (16%), Positives = 56/151 (37%)
Query: 410 NTPENGNITELYHELKYWQCLRQDLERARLLCELVRKREKMKRELIKVTEACTMIKLNPL 469
N ++ + + + + + + + + + T K+N
Sbjct: 105 NEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQA 164
Query: 470 NSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDF 529
+L + F+E VD E+P+Y +++ PM L+ + ++ QY + DF
Sbjct: 165 LLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDF 224
Query: 530 ENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
D L+ +N +N+ + YK +
Sbjct: 225 IIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255
Score = 95.1 bits (236), Expect = 2e-21
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 469 LNSLLLQLIDLI--KARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSL 526
N + +D++ K +D F++ P Y I+QPM + + ++
Sbjct: 29 FNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRDY-EYEDGP 87
Query: 527 EDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+F D L+ +NC YNE D++ K +++ +
Sbjct: 88 SNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVML 121
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 104 bits (262), Expect = 1e-26
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 463 MIKLNPLN-SLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKAN 521
++KL P++ +L+ + + F +PV + VPDY +IK PMDL+T+ +++ +
Sbjct: 14 LVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQED 72
Query: 522 --QYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
Y EDF DF L+ +NC +NE D+ AGIK++
Sbjct: 73 YSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENY 113
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 94.7 bits (235), Expect = 2e-22
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 445 RKREKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADV 504
+ K + +L+ + + F +PV + VPDY +
Sbjct: 58 YDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVP-LTVPDYYKI 116
Query: 505 IKQPMDLTTMTNKVKAN--QYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
IK PMDL+T+ +++ + Y EDF DF L+ +NC +NE D+ AGIK++
Sbjct: 117 IKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENY 174
Score = 40.7 bits (95), Expect = 7e-04
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPSRAV 190
+E C +C +G +L C+ C H C+ P G+W+C C V
Sbjct: 2 PNEDWCAVCQNGGE-----LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEV 56
Query: 191 DCVLCPNNGGAFK 203
+ + + K
Sbjct: 57 EYDCDAPSHNSEK 69
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 84.9 bits (210), Expect = 2e-19
Identities = 23/151 (15%), Positives = 58/151 (38%), Gaps = 12/151 (7%)
Query: 468 PLNSLLLQLID-LIKARD-TGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLS 525
+ L+ L ++ +D G + + + I D K P+ + V+ N+Y
Sbjct: 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYRR 66
Query: 526 LEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQIGSILP 585
L+ F+ ++E N D+ Y+ ++++Q + ++ K +
Sbjct: 67 LDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGE----------IL 116
Query: 586 GTSAKGVNSSDVVHMEETSKAENNKQEEKKN 616
+ A + + + E + E +E +++
Sbjct: 117 LSPALSYTTKHLHNDVEKERKEKLPKEIEED 147
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 81.5 bits (201), Expect = 3e-19
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP-----YIPEGQWLCRRCLHTPS 187
VC IC + + N ++ CD C HQ C+ + +WLCR+C+ +
Sbjct: 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63
Query: 188 R 188
Sbjct: 64 T 64
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 80.5 bits (198), Expect = 1e-18
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 129 QDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCY------GVPYIPEGQWLCRRC 182
++ C +C + N ++ C C+ HQDC+ P W C RC
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARC 69
Query: 183 LHTPSRAVDCVLCPN 197
R
Sbjct: 70 TRQMKRMAQKNQKSG 84
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 80.1 bits (197), Expect = 3e-18
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 18/114 (15%)
Query: 711 SGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPV 770
S ++ V K G+PW+P++++
Sbjct: 2 SERVNYKPGMRVLTKMSGFPWWPSMVVTE-------------SKMTSVARKSKPKRAGTF 48
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEAL 824
Y V+FF + + W + L PL ++ + + ++ KAY+ A
Sbjct: 49 YPVIFFPN-KEYLWTGSDSLTPLTSEAISQFLEKPKPKT----ASLIKAYKMAQ 97
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding;
NMR {Schizosaccharomyces pombe}
Length = 108
Score = 80.0 bits (197), Expect = 3e-18
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 711 SGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPV 770
S + K GYPW+PAL++ + + + N+ +
Sbjct: 1 SADDRLNFGDRILVKAPGYPWWPALLLRRKE-------------TKDSL--NTNSSFNVL 45
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEAL 824
Y VLFF + W+ RN ++PL E+ + RK K + +AY+ +
Sbjct: 46 YKVLFFPD-FNFAWVKRNSVKPLL-DSEIAKFLGSSKRK---SKELIEAYEASK 94
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA
binding, DNA binding protein; HET: DNA; NMR {Homo
sapiens}
Length = 134
Score = 80.6 bits (198), Expect = 4e-18
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 703 DSESGSSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLAL 762
+ S F LVWAK GYPW+P+L+ N P D +
Sbjct: 10 RRSVAPAAPTSSDFSPGDLVWAKMEGYPWWPSLVYN----------------HPFDGTFI 53
Query: 763 ANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQE 822
V FFD T W+ + L+P + + K + + + +A Q
Sbjct: 54 REKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQK--GGHFYSAKPEILRAMQR 111
Query: 823 A 823
A
Sbjct: 112 A 112
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 73.5 bits (180), Expect = 6e-16
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 707 GSSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNY 766
GSS S S Q+VW K Y W+PA I NP S P ++ L ++
Sbjct: 1 GSSGS-SGKLHYKQIVWVKLGNYRWWPAEICNP-------------RSVPLNIQGLKHDL 46
Query: 767 TEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALVH 826
+ + V FF + + W+ + ++ P D+ E + K KKA +EA
Sbjct: 47 GD--FPVFFFGS-HDYYWVHQGRVFPYVEGDK----SFAEGQTSI-NKTFKKALEEAAKR 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 71.5 bits (174), Expect = 3e-14
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 488 IFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKA---NQYLSLEDFENDFNLMVENCLTYN 544
F EPV +P+Y +IK+PMDL+T+ K++ Y +DF D L+ +NC +N
Sbjct: 101 EFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
Query: 545 EKDTIFYKAGIKMKQVGGAL--INQAAKTLND 574
E + + A + QA K +
Sbjct: 160 EMMKVVQVYADTQEINLKADSEVAQAGKAVAL 191
Score = 35.3 bits (80), Expect = 0.047
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPSRAV 190
+E C +C +G +L C+ C H C+ P G W+C C V
Sbjct: 5 PNEDWCAVCQNGGD-----LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEV 59
Query: 191 DCVLCPNNGGAFKLTDRGAWAHVVCALWIPEVRFAN----TVFLEPIDS 235
+ T +G + F EP+ +
Sbjct: 60 EYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA 108
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 66.0 bits (160), Expect = 6e-13
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 706 SGSSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANN 765
+ F LVW K +G+ W+PA++++ +
Sbjct: 2 DSTEYQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQA------------------ 43
Query: 766 YTEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
+ V +F + + +KL LG+ + + ++ + RKA+ ++A
Sbjct: 44 -MPGMRWVQWFGD-GKFSEISADKLVALGLFSQHFNLATF-NKLVSYRKAMYHTLEKA 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 6e-13
Identities = 92/690 (13%), Positives = 193/690 (27%), Gaps = 221/690 (32%)
Query: 2 PICSKEDFEHEYGQASSDNR-QLVLEALQRSQEAVTKLPEPCFKELDDYKHLDSISRPTA 60
I SKE+ +H + + + L QE + +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ----------------------- 80
Query: 61 YIRFIEKNADELDEEVEYDMDEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQ 120
+F+E ++ + +L M+ + P + + DRL + Q
Sbjct: 81 --KFVE------------EVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 121 -FQMSHTQSQDIIDD--EAVCCICNDGECQ-NSNVILFCDMCNLAVHQDCYGVPYIPEG- 175
F + +A+ E + NV++ GV G
Sbjct: 125 VFAKYNVSRLQPYLKLRQALL------ELRPAKNVLI-------------DGVL----GS 161
Query: 176 --QWL----CRRCLHTPSRAVDCVLCPNNGGAFKLTDRGAWAHV-VC----ALWIPEVRF 224
W+ C V C + F W ++ C + +
Sbjct: 162 GKTWVALDVCLS---------YKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKL 205
Query: 225 ANTV---FLEPIDSIEAIP----AARWKLTCYVCKQRGVGACIQ----CHKTNCYAAFHV 273
+ + D I + + +L + + + + + AF++
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNL 264
Query: 274 TCAQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAHTPPDVQHRPRLPAPSDEKLKNARLV 333
+C + T R + + T + H P DE +
Sbjct: 265 SCKI-------LLTTRFKQVTDFLSAAT------TTHISLDHHSMTLTP-DEVKS----L 306
Query: 334 LAKKRVSVPTVSIPTIPPERVQDIAQLIS-VPKKSQLMNRLIAYW----------TIKRQ 382
L K +P E + + +S + + + W I+
Sbjct: 307 LLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 383 LRNGVPLLRRLQSSHQARRDEHCKIMSNTPENGNITELYHELKYWQCL-RQDLERARLLC 441
L L+ + + + + P + +I + L W + + D+ ++
Sbjct: 363 LNV-------LEPAEYRKMFDRLSVF---PPSAHIPTILLSL-IWFDVIKSDVM--VVVN 409
Query: 442 ELVRKR--EKMKREL------IKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFLEPV 493
+L + EK +E I + + L+ ++ ++ K D+ D+ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 494 D------------VIEVPDYADVIKQP-MDLTTMTNKVKA-----NQYLSLEDFENDFNL 535
D IE P+ + + +D + K++ N S+ +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK- 528
Query: 536 MVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDAGFDQ----IGSILPGTSAKG 591
FYK I ND +++ I LP
Sbjct: 529 --------------FYKPYI---------------CDNDPKYERLVNAILDFLPKIEENL 559
Query: 592 VNS--SDVVH---MEETSK--AENNKQEEK 614
+ S +D++ M E E +KQ ++
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 36.4 bits (83), Expect = 0.050
Identities = 62/498 (12%), Positives = 144/498 (28%), Gaps = 141/498 (28%)
Query: 413 ENGNITELYHEL--KYWQCLRQDLERARLLCELVRKREKMKRELIKVTEACTMIKLNPLN 470
E G Y ++ + + + C+ V + M + ++ E +I
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFD-----CKDV---QDMPKSILSKEEIDHIIMSKDAV 61
Query: 471 SLLLQLIDLI--KARDTGDIFLEPVDVIEVPDY-------ADVIKQPMDLTTMTNKVKAN 521
S L+L + K + F+E +V+ +Y +QP +T M + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVE--EVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 522 QYLSLEDFENDF------NLMVENCLT--YNEKDTIFYKAGIKM----KQVGGALINQAA 569
Y + F L + L K+ + G + K + A
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--G--VLGSGKTW---V---AL 168
Query: 570 KTLNDAGFDQ----------IGS-----------------ILPGTSAKGVNSSDVVHMEE 602
+ + I P +++ +SS++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 603 TSKAENN---KQEEKKNSTDVVMGMSSK---DTKNFKSPE-ITTRKRHGNKKKGAQEELS 655
+ +AE K + +N V++ + + + N +TTR +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK------------Q 276
Query: 656 VPESDSFKVYRSGGELKGEAFDSAEEGGEDGEENSSCSECSSSCDSSDSESGSSVSGSHT 715
V +D S + D E S + D + V ++
Sbjct: 277 V--TDFL----SAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNP 327
Query: 716 FEQLQLVWAKCRGYP--W--YPALIINPQMPLGYIHNGVPIPSP-------------PED 758
+L ++ R W + + + + I + + + P P
Sbjct: 328 R-RLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 759 VLALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADR----- 813
+ + ++ W + ++ + + + ++L + L+E +
Sbjct: 385 A-----HIPTILLSLI-------WFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 814 ---KAVKKAYQEALVHKT 828
+ K E +H++
Sbjct: 431 IYLELKVKLENEYALHRS 448
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 64.2 bits (155), Expect = 6e-12
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 499 PDYADVIKQPMDLTTMTNKVKANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMK 558
+QP+DL + K+ Y S+ +F +D +++ + + KA +K
Sbjct: 95 HLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVK 154
Query: 559 QV 560
Sbjct: 155 SF 156
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 60.6 bits (146), Expect = 5e-11
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 701 SSDSESGSSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVL 760
+ + F +LVW K RG+ W+P I++ M
Sbjct: 2 TKAGDDEPEYEDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAA------------ 49
Query: 761 ALANNYTEPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAY 820
E V++F + + KL PL + +++P RKA+ +
Sbjct: 50 -------EGTRWVMWFGD-GKFSVVCVEKLMPLSSFCSAFH-QATYNKQPMYRKAIYEVL 100
Query: 821 QEA 823
Q A
Sbjct: 101 QVA 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 57.2 bits (137), Expect = 2e-09
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 480 IKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVK---ANQYLSLEDFENDFNLM 536
+ + + + D +DLT + +++ + Y S ++F D M
Sbjct: 88 LFCHEPCRPLHQLAT--DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145
Query: 537 VENCLTYNEKDTIFYKAGIKMKQV 560
+ E ++ I +++
Sbjct: 146 FKQFNKLTEDKA-DVQSIIGLQRF 168
Score = 44.9 bits (105), Expect = 3e-05
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 7/86 (8%)
Query: 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLHTPSRAVDC 192
+C +C ++ C+ C H DC+ +P +W C C P +
Sbjct: 2 ATICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEED 56
Query: 193 VLCPNNGGAFKLTDRGAWAHVVCALW 218
+G
Sbjct: 57 GSLSLDGADSTGVVAKLSPANQRKCE 82
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 53.4 bits (128), Expect = 5e-09
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLHTPSR 188
D +C +C+ G+ + +LFCD C+ H C P IP G W C +C+ +
Sbjct: 15 DSYICQVCSRGD--EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECK 69
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 50.2 bits (120), Expect = 3e-08
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAV---HQDCYGVPYIPEGQWLCRRC 182
+ CICN ++ CD + + H C G+ P+G+W C +C
Sbjct: 3 SGSSGYCICNQVS---YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 52
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 48.9 bits (117), Expect = 5e-08
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLH 184
A C +C + ++ CD CN A H C +P+G+W C C
Sbjct: 1 ARCKVCRKKG--EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 49.1 bits (117), Expect = 5e-08
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCD---MCNLAVHQDCYGVPYIPEGQWLCRRC 182
I +E C+CN + ++ CD H C + Y P+G+W C +C
Sbjct: 5 AIDPNEPTYCLCN---QVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 57
Score = 26.8 bits (59), Expect = 6.1
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 247 TCYVCKQRGVGACIQCHKTNC-YAAFHVTC 275
T +C Q G I C C FH +C
Sbjct: 12 TYCLCNQVSYGEMIGCDNEQCPIEWFHFSC 41
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 50.4 bits (120), Expect = 8e-08
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPS 187
+ C +C G +N + +LFCD C+ H C P PEG W C C
Sbjct: 57 ECKSCILC--GTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110
Score = 30.4 bits (68), Expect = 0.76
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 136 AVCCICNDGECQNSNV-----ILFCDMCNLAVHQDCYG-----VPYIPEGQWLCRRCLHT 185
+ C C G N ++ C C + H C + +W C C
Sbjct: 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKS- 60
Query: 186 PSRAVDCVLC 195
C+LC
Sbjct: 61 ------CILC 64
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 50.0 bits (119), Expect = 1e-07
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPSRAVD 191
+ VC C + +L CD C+ H C +P W C+ C
Sbjct: 53 ECKVCQNCKQSG--EDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC-------RI 103
Query: 192 CVLCPNNG 199
C+ P++G
Sbjct: 104 CISGPSSG 111
Score = 39.6 bits (92), Expect = 5e-04
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRC 182
A C +C+ + FC C H C + + W C C
Sbjct: 5 SSGANCAVCDSPG--DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 47.7 bits (114), Expect = 1e-07
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 128 SQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRC 182
S E C +C +L CD C+ H DC P IP+G W+C RC
Sbjct: 2 SSGSSGHEDFCSVCRKSG-----QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 47.9 bits (114), Expect = 2e-07
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
+ +E C+C+ D H C G+ P G+W C RC
Sbjct: 4 PVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 56
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 47.8 bits (114), Expect = 2e-07
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRC 182
C +C DG +L CD C + H C P IP G+WLC RC
Sbjct: 4 GSDHHMEFCRVCKDGG-----ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 47.0 bits (112), Expect = 3e-07
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHTPSRA 189
+ E C +C +L CD C+ H DC P IP+G W+C RC +
Sbjct: 2 MIHEDFCSVCRKSG-----QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56
Query: 190 VDCV 193
+ +
Sbjct: 57 EEAI 60
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 47.1 bits (112), Expect = 3e-07
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCL 183
+E C +C DG ++ CD C A H C P IP G W C CL
Sbjct: 6 KNEDECAVCRDGG-----ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 53
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 46.3 bits (110), Expect = 5e-07
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRC 182
D + C +C G I+ CD C A H C PEG+W C C
Sbjct: 8 TDHQDYCEVCQQGGE-----IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 47.3 bits (112), Expect = 6e-07
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 28/111 (25%)
Query: 713 SHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYL 772
H F+ LV+AK +GYP +PA I + Y
Sbjct: 3 PHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPN--------------------KYP 42
Query: 773 VLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
+ FF T +L L P D+ + KP RK + E
Sbjct: 43 IFFFGT-HETAFLGPKDLFPY---DKCKD----KYGKPNKRKGFNEGLWEI 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 47.7 bits (113), Expect = 6e-07
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRC 182
+ C C D +N++ +LFCD C+ H +C P +P+G W+C+ C
Sbjct: 59 IECKTCSSCRDQ-GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
Score = 32.0 bits (72), Expect = 0.23
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 16/77 (20%)
Query: 132 IDDEAVCCICNDGECQNSN----VILFCDMCNLAVHQDCYGVP-----YIPEGQWLCRRC 182
++ +C C + QN ++ C C + H C + +W C C
Sbjct: 2 MEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC 61
Query: 183 LHTPSRAVDCVLCPNNG 199
C C + G
Sbjct: 62 KT-------CSSCRDQG 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 1e-06
Identities = 75/466 (16%), Positives = 132/466 (28%), Gaps = 180/466 (38%)
Query: 447 REKMKRELIKVTEACTMIKLNPLNSLLLQLIDLIKARDTGDIFL----EPVDVIEVPDYA 502
+E+ + L + TE + + +L+ + FL V+ +V +
Sbjct: 34 QEQFNKILPEPTEG--FAADDEPTTP----AELV-GK-----FLGYVSSLVEPSKVGQFD 81
Query: 503 DVIKQPMDLTTMTNKVKANQYLSLEDFENDF-----------NLMVENCLTYNEKDTI-- 549
V+ L L +FEN + L+ EN T + +
Sbjct: 82 QVLN-----------------LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 550 -FYKAGIKM-----KQVGGALINQAAKTLNDAGFDQIGSILPGTSAKGVNSSDVVHMEE- 602
+ A I K+ AL +A +A Q+ +I G +G N+ D EE
Sbjct: 125 NYITARIMAKRPFDKKSNSALF-RAVGE-GNA---QLVAIFGG---QG-NTDDYF--EEL 173
Query: 603 -----TSKAENNKQEEKKNSTDVVMGMSSKDTKNFKSPEITTRKRHGNKKKGA------Q 651
T ++ S++ + K +G +
Sbjct: 174 RDLYQTYHV----------LVGDLIKFSAETLSELIRTTLDAEKVFT---QGLNILEWLE 220
Query: 652 EELSVPESD-------SFKV--------Y----RSGGELKGEAFDSAEEGGEDGEENSSC 692
+ P+ D S + Y + G GE + G +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-GA------TGH 273
Query: 693 SE------CSSSCDSSDSESGSSVSGSHTFEQLQ------LVWAKCRGYPWYPALIINPQ 740
S+ + DS +S F L + R Y YP + P
Sbjct: 274 SQGLVTAVAIAETDSWES-----------FFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 741 MPLGYIHNGVPIPSP-----------PEDVLALANNY---TEPVYLVLFFDTKRTWQWLP 786
+ + N +PSP +D + N++ + V + L +
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNG-------A 374
Query: 787 RN---------------KLEPLGITDELDQIKLMESRKP-ADRKAV 816
+N L LDQ SR P ++RK
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-----SRIPFSERKLK 415
Score = 43.1 bits (101), Expect = 4e-04
Identities = 74/506 (14%), Positives = 133/506 (26%), Gaps = 232/506 (45%)
Query: 39 PEPCFKEL----DDYKHLDSISRPTAYIRFIEKNADELDEEVEYDMDEEDA--------S 86
+ F+EL Y L I+ +A+ L E + +D E
Sbjct: 166 TDDYFEELRDLYQTYHVLVG--------DLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 87 WLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCICNDGEC 146
WL SN P +D + + C
Sbjct: 218 WL------ENPSNTPD--------------------------KDYLLSIPISC------- 238
Query: 147 QNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPNNGGAFKLTD 206
+I + + V + TP G +
Sbjct: 239 ---PLIGVIQLAHYVV---------------TAKLLGFTP-------------GELRSYL 267
Query: 207 RGAWAH---VVCALWIPEVRFANTVFLEPIDSIEA-IPAARWKLTCYVCKQRGVGACIQC 262
+GA H +V A V + DS E+ + R +T
Sbjct: 268 KGATGHSQGLVTA-----------VAIAETDSWESFFVSVRKAIT--------------- 301
Query: 263 HKTNCYAAFHVTC-AQQAGLYMNMDTIRDHSGVEPVVVQKLAYCDAHTPPDVQHRPRLPA 321
F + +A ++ + P +++ +++ +P+
Sbjct: 302 ------VLFFIGVRCYEA---------YPNTSLPPSILED----------SLENNEGVPS 336
Query: 322 PSDEKLKNARLVLAKKRVSVPTVSIPTIPPERVQDIAQLI--SVPKKSQLMNRLIAYWTI 379
P +SI + E+VQD +P Q+ I+
Sbjct: 337 --------------------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVE---IS---- 369
Query: 380 KRQLRNG----V----PL--------LRRLQSSH---QAR---RDEHCKIMSNT--PENG 415
L NG V P LR+ ++ Q+R + K SN P
Sbjct: 370 ---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-SNRFLP--- 422
Query: 416 NITELYHELKYWQCLRQDLERA--RLLCELVRKREKMKRELIKVTEACT-----MIKLNP 468
+ +H L A + +LV+ + I++ T + L+
Sbjct: 423 -VASPFHS-HL-------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS- 472
Query: 469 LNSLLLQLIDLIKARDTGDIFLEPVD 494
S+ +++D I PV
Sbjct: 473 -GSISERIVDC--------IIRLPVK 489
Score = 37.7 bits (87), Expect = 0.017
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 36/119 (30%)
Query: 440 LCELVRKREKMKRELIKVTEACT----MIKLNPL-------NSLLLQLIDLIKARDTGDI 488
L E+V R + + E MI +NP L +++ + + TG
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV-GKRTGW- 1839
Query: 489 FLEPVD--------VI--------EVPDYADVIK-QPMDLTTMTNKVKANQYLSLEDFE 530
+E V+ V V + + IK Q +D+ ++ + LSLE+ E
Sbjct: 1840 LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI------IELQKSLSLEEVE 1892
Score = 35.4 bits (81), Expect = 0.098
Identities = 48/297 (16%), Positives = 90/297 (30%), Gaps = 117/297 (39%)
Query: 394 QSSHQARR-----DEHCK---------IMSNTP---------ENGN-ITELYHELKYWQC 429
++S A+ D H K I+ N P E G I E Y + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 430 LRQDLERARLLCELVRKREKMK----RELIKVTE-----------ACT-MIK---LNPLN 470
+ L+ ++ E+ + L+ T+ A +K L P +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 471 ------SL--------------LLQLIDLIKARDTGDIFLE--PVDVIEVPDYADVIKQP 508
SL + L++++ R G P D + +Y + P
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR--GMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 509 MDLTTMTNKVKANQYLSLEDFE-------NDFNLMVE--NCLTYNEKDTIFYKAGIKMKQ 559
+V A+ S E + +VE N YN ++ +Q
Sbjct: 1815 -------GRVAAS--FSQEALQYVVERVGKRTGWLVEIVN---YNVEN----------QQ 1852
Query: 560 V--GGAL--INQAAKTLNDAGFDQIGSILPGTSAKGVNSSDVVHMEETSKAENNKQE 612
G L ++ LN F ++ I D++ ++++ E +
Sbjct: 1853 YVAAGDLRALDTVTNVLN---FIKLQKI------------DIIELQKSLSLEEVEGH 1894
Score = 31.6 bits (71), Expect = 1.4
Identities = 41/281 (14%), Positives = 83/281 (29%), Gaps = 90/281 (32%)
Query: 568 AAKTLNDAGFDQIGSILPGTSAKGVNSSDVVHMEETSKAE----------NNKQEEKKNS 617
A L + F+ ILP +G + D E T+ AE + + K
Sbjct: 29 IASQLQEQ-FN---KILP-EPTEGFAADD----EPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 618 TDVVMGMSSKD-TKNF-KSPEITTRKRHGNKKKGAQEEL--SVPESDSFKVYRSGGELKG 673
D V+ + + + + +I H L + + + + ++ +K
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDI-----HA---------LAAKLLQENDTTLVKTKELIK- 124
Query: 674 EAFDSAEEGGEDGEENSSCSECSSSCDSSDSES-------GSSVSGSHTFEQLQLVWAKC 726
+ +A + + S S + +++ G++ FE+L+ ++
Sbjct: 125 -NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT---DDYFEELRDLYQT- 179
Query: 727 RGYPWYPALII-----------------NPQMPLGY-----IHNGVPIPSPPEDVLALAN 764
Y +I G + N P +P +D L
Sbjct: 180 --YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN--PSNTPDKDYLLSI- 234
Query: 765 NYTEPVYLVL--------FFDTKRTWQWLPRNKLEPL-GIT 796
P+ L + T + + P L G T
Sbjct: 235 ----PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Score = 30.8 bits (69), Expect = 2.5
Identities = 36/250 (14%), Positives = 71/250 (28%), Gaps = 74/250 (29%)
Query: 509 MDLTTMTNKVK-----ANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGA 563
MDL + + A+ + F++ + + + + N + + G K K++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNH-----FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 564 LINQAAKTLNDAGFDQIGSILPGTSAKGVNSSDVVHMEETSKAENNKQEEKKNSTDVVMG 623
+T+ D G + I K +N E ++ ++ ++T
Sbjct: 1688 YSAMIFETIVD-GKLKTEKIF-----KEIN-------EHSTSYTFRSEKGLLSAT----- 1729
Query: 624 MSSKDTKNFKSPEITT------R--KRHGNKKKGAQ----------------EELSVPES 659
F P +T K G A + +S+
Sbjct: 1730 -------QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI--E 1780
Query: 660 DSFKV--YRSGGELKGEAFDSAEEGGEDGEENSSC-----SECSSSCDSSDSESGSSVSG 712
+V YR G A E G N ++S + G
Sbjct: 1781 SLVEVVFYR------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 713 SHTFEQLQLV 722
T +++V
Sbjct: 1835 KRTGWLVEIV 1844
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 44.8 bits (106), Expect = 2e-06
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAV---HQDCYGVPYIPEGQWLCRRC 182
+E C+C+ ++ CD + + H C + P+G+W C RC
Sbjct: 6 SNEPTYCLCHQVS---YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRC 55
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 44.6 bits (105), Expect = 3e-06
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAV---HQDCYGVPYIPEGQWLCRRC 182
+ +E C+C+ ++ CD + ++ H C G+ P G+W C RC
Sbjct: 10 PVDPNEPTYCLCHQVS---YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 45.1 bits (106), Expect = 5e-06
Identities = 24/116 (20%), Positives = 35/116 (30%), Gaps = 28/116 (24%)
Query: 708 SSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYT 767
S + ++ LV+AK +GYP +PA I
Sbjct: 12 SRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTAN------------------ 53
Query: 768 EPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
Y V FF T +L L P + ++ KP RK + E
Sbjct: 54 --KYQVFFFGT-HETAFLGPKDLFPY--EESKEKF-----GKPNKRKGFSEGLWEI 99
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 44.7 bits (105), Expect = 5e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 121 FQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAV---HQDCYGVPYIPEGQW 177
S + +E C+C+ ++ CD + ++ H C G+ P G+W
Sbjct: 21 VHPSDVLDMPVDPNEPTYCLCHQVSYGE---MIGCDNPDCSIEWFHFACVGLTTKPRGKW 77
Query: 178 LCRRC 182
C RC
Sbjct: 78 FCPRC 82
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 43.7 bits (103), Expect = 8e-06
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEG-QWLCRRC 182
C +C N+ L CD CN+A H C P +PE W C C
Sbjct: 24 CHSCSCRVCGGKH--EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 43.3 bits (102), Expect = 1e-05
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 124 SHTQSQDIIDDEA-----VCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQ 176
SH +I DE +C CN + + + ++ CD C+ H C G+ E Q
Sbjct: 2 SHMAMAYVIRDEWGNQIWICPGCNKPD--DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQ 59
Query: 177 WLCRRCLH 184
W C +C +
Sbjct: 60 WFCPKCAN 67
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 42.9 bits (101), Expect = 1e-05
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 138 CCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIP-EGQWLCRRCLH 184
C +C + + + L CD C++A H C P +P E +W C C +
Sbjct: 21 CHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 43.4 bits (102), Expect = 1e-05
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCY--GVPYIPEGQWLCRRCLHTPSRAV 190
D +C +C ++ C+ C H DC+ + +P +W C C P
Sbjct: 23 DSATICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77
Query: 191 DCV 193
+ V
Sbjct: 78 EDV 80
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 42.5 bits (100), Expect = 2e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIP-EGQWLCRRCLH 184
C +C + + + L CD C++A H C P +P E +W C C +
Sbjct: 25 RVCACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 45.1 bits (106), Expect = 3e-05
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIP-EGQWLCRRCLH 184
C +C + + + L CD C++A H C P +P E +W C C +
Sbjct: 172 CRVCACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 41.1 bits (96), Expect = 6e-05
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 124 SHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY-------IPEGQ 176
+ ++ D A+ CIC N+ ++ CD C H DC G+
Sbjct: 4 GSSGECEVYDPNALYCICRQPH--NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGED 61
Query: 177 WLCRRC--LHTPSRA 189
++C C L PS
Sbjct: 62 YICPNCTILSGPSSG 76
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 40.5 bits (94), Expect = 2e-04
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 128 SQDIIDDEAVCCICNDGECQNSNVILFCDM---CNLAVHQDCYGVPYIPEGQWLCRRC 182
++ + E V C C + ++ CD H C G+ P+G+W C +
Sbjct: 18 TEGNNNQEEVYCFCRNVSYGP---MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKD 72
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 40.5 bits (94), Expect = 3e-04
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 117 KECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY----- 171
+ ++ D +D++ C C +G ++ CD C+ A + C
Sbjct: 41 FKYYMSDDISRDSDGMDEQ--CRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRREL 93
Query: 172 ----IPEGQWLCRRCLHTP 186
QW C C P
Sbjct: 94 STIMDENNQWYCYICHPEP 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 39.4 bits (91), Expect = 8e-04
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 117 KECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY----- 171
+ ++ D +D++ C C +G ++ CD C+ A + C
Sbjct: 47 FKYYMSDDISRDSDGMDEQ--CRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRKEL 99
Query: 172 ----IPEGQWLCRRCLHTP 186
QW C C P
Sbjct: 100 STIMDENNQWYCYICHPEP 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 38.4 bits (88), Expect = 0.001
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 138 CCICNDGECQNSNVILFCDMCNLAVHQDCYGV--------PYIPEGQWLCRRCLHTPS 187
C C + + IL C H++C G+ W C CL T
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 37.2 bits (86), Expect = 0.001
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 124 SHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP---YIPEGQWLCR 180
+ + +D+ V C C + + +L CD C + H C G+ +P ++LC
Sbjct: 4 GSSGMERGVDNWKVDCKCGTKD-DDGERMLACDGCGVWHHTRCIGINNADALPS-KFLCF 61
Query: 181 RC--LHTPSRA 189
RC L PS
Sbjct: 62 RCIELSGPSSG 72
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 36.5 bits (84), Expect = 0.003
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEG---QWLCRRC 182
+ V C+C N +I C +C H C G+ + C C
Sbjct: 8 MALVPVYCLCRQPYNVNHFMI-ECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 36.0 bits (83), Expect = 0.004
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 126 TQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRC 182
+ +++ V C C ++ C+ C+ +H C + +PE ++C++C
Sbjct: 9 SGRENLYFQGLVTCFCMKPF--AGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKC 64
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 34.0 bits (78), Expect = 0.013
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV---PYIPEGQWLCRRC 182
C C + + I CD+C + H C + Q+ C C
Sbjct: 4 GSSGQCGACGESYAADEFWI-CCDLCEMWFHGKCVKITPARAEHIKQYKCPSC 55
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 33.5 bits (76), Expect = 0.025
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 138 CCICNDGECQNSNVILFCDM-CNLAVHQDCYGVPYI--------PEGQWLCRRCL 183
C IC + E + + C+ C H+ C G+ W C C+
Sbjct: 11 CGICTN-EVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 34.5 bits (78), Expect = 0.045
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 81 DEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCI 140
DEE ++ K+ + I ++ + K + C +
Sbjct: 12 DEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNR-----------CIL 60
Query: 141 CNDGECQNSNVILFCDMCNLAVHQDCYGVPYI--PEGQWLCRRC 182
C + + + C+ C V C P WLC+ C
Sbjct: 61 CGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC 104
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 32.6 bits (74), Expect = 0.069
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP---YIPEGQWLCRRC 182
V C+C +I CD C H C GV + C C
Sbjct: 7 ATVPVYCVCRLPYDVTRFMI-ECDACKDWFHGSCVGVEEEEAPDIDIYHCPNC 58
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 34.2 bits (77), Expect = 0.074
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 6/102 (5%)
Query: 81 DEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCI 140
DEE ++ + + + + + + + +E C
Sbjct: 19 DEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAH-----LNETHCAR 73
Query: 141 CNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
C N C C+L V + C + E WLC C
Sbjct: 74 CLQPYRLLLNSRRQCLECSLFVCKSC-SHAHPEEQGWLCDPC 114
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 31.6 bits (72), Expect = 0.080
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLHT 185
+ V C C ++ C+ C+ +H C + +PE ++C++C +
Sbjct: 3 DLVTCFCMKPF--AGRPMIECNECHTWIHLSCAKIRKSNVPE-VFVCQKCRDS 52
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 32.8 bits (73), Expect = 0.48
Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 31/190 (16%)
Query: 133 DDEAVCCICNDGECQNSNVILF--CDMCNLAVHQDCYGVP---YIPEGQWLCRRCL---- 183
+ E N + CD C H C G+ Y ++ C +C+
Sbjct: 37 EKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96
Query: 184 ------------HTPSRAVDCVLCPNNGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLE 231
+ + L G + D + V + EV +
Sbjct: 97 HSIRYKVVAPHRYRWYSPNEKHLGIEVGSKTWIEDFITRENTVPSPTDDEVCIVEDGYEF 156
Query: 232 PIDSIEAIPAARWKLTCYVCKQRGVGACIQCHKTNC---------YAAFHVT-CAQQAGL 281
+ + A W V G+ + + Q+
Sbjct: 157 RREFEKLGGADNWGKVFMVKDMDGLNMTMPKPGFDLEDVVKIMGSDYEVDTIDVYNQSTY 216
Query: 282 YMNMDTIRDH 291
M +DT R
Sbjct: 217 SMKLDTFRKL 226
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 30.9 bits (70), Expect = 0.52
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 412 PENGNITELYHELKYWQCLRQDLERARLLCELVRKREKMKRE 453
P I+ EL ++ L + + RKRE ++
Sbjct: 79 PRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLEHH 120
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 30.1 bits (67), Expect = 0.54
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQ-------WLCRRC 182
+ V C+C + +S + C++ H C +P P + C C
Sbjct: 13 PEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 69
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 31.9 bits (71), Expect = 0.95
Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 26/140 (18%)
Query: 141 CNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLH--TPSRAVDCVLCPNN 198
C D C + + C +C T + DC+ C +
Sbjct: 178 CKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLH- 236
Query: 199 GGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQRGVGA 258
G +C L P + NT E + + +
Sbjct: 237 -----FNHSG-----ICELHCPALVTYNTDTFESM-------------HNPEGRYTFGAS 273
Query: 259 CIQCHKTNCYAAFHVTCAQQ 278
C+ N + +C
Sbjct: 274 CVTTCPYNYLSTEVGSCTLV 293
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics,
ring-finger, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
g.44.1.1
Length = 93
Score = 29.7 bits (66), Expect = 1.0
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 137 VCCICND--GECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
C IC D G ++ + C+ C + CY EG C +C
Sbjct: 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREGTQNCPQC 64
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 28.8 bits (64), Expect = 1.0
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 134 DEAVCCICNDGECQNSNVILFCD--MCNLAVHQDCYGVPYIPEGQ------WLCRRCLHT 185
+ V CIC ++ ++ C+ C + H +C +P P + C C
Sbjct: 8 EAKVRCIC--SSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR-- 63
Query: 186 PSRA 189
SRA
Sbjct: 64 LSRA 67
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A
{Escherichia coli O127}
Length = 236
Score = 30.7 bits (69), Expect = 1.5
Identities = 10/110 (9%), Positives = 30/110 (27%), Gaps = 15/110 (13%)
Query: 434 LERARLLCELVRKREKMKRELIKVTEACTMIKLNPLNSLLLQL--------------IDL 479
L + + ++ + + +L + S+ QL D
Sbjct: 45 LTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDF 104
Query: 480 IKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLEDF 529
++ + + L + I + + ++ S+ D+
Sbjct: 105 VRVDENSNPPLVGDYTLYTVQRPVTI-TLLGAVSGAGQLPWLAGRSVTDY 153
>3pmi_A PWWP domain-containing protein MUM1; structural genomics
consortium, SGC, protein binding, nucLeu; HET: UNL;
2.82A {Homo sapiens}
Length = 134
Score = 29.7 bits (66), Expect = 1.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 715 TFEQLQLVWAKCRGYPWYPALI 736
+FE LVW K + YP++PA++
Sbjct: 4 SFEVGMLVWHKHKKYPFWPAVV 25
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 31.0 bits (70), Expect = 1.7
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 18/135 (13%)
Query: 33 EAVTKLPEPCFKELDDYKHLDSISRPTAYIRFIEKNADELDEEVEYDMDEEDASWLNIMN 92
E + K+ E Y L+ ++ +++ DE D + + E+ + L
Sbjct: 136 EYIAKMTINPIYEHVGYTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRA 195
Query: 93 EQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVI 152
++ +P +++ H C C +
Sbjct: 196 TLKENEQIP------------------KYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQG 237
Query: 153 LFCDMCNLAVHQDCY 167
+ C C L VH+ C
Sbjct: 238 VKCADCGLNVHKQCS 252
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 28.1 bits (63), Expect = 2.3
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 25/81 (30%)
Query: 127 QSQDIIDDEAVCCICNDGECQNSNVIL-----FCDMCN---LAVHQDCYGVPYIPEGQWL 178
+ DE CCIC DG +++IL FC C H++C P +
Sbjct: 7 GRVKQLTDEEECCICMDGR---ADLILPCAHSFCQKCIDKWSDRHRNC---P-------I 53
Query: 179 CRRCLHTPSRAVDCVLCPNNG 199
CR + + + P++G
Sbjct: 54 CRLQMTGANESSG----PSSG 70
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.2 bits (67), Expect = 3.8
Identities = 16/156 (10%), Positives = 31/156 (19%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLHTPSRAVDCV 193
+ A C E C N C + E L R D
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 194 LCPNNGGAFKLTDRGAWAHVVCALWIPEVRFANTVFLEPIDSIEAIPAARWKLTCYVCKQ 253
C + +L + ++ R ++ +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 413
Query: 254 RGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIR 289
+ I + V + ++ I
Sbjct: 414 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC 449
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 29.9 bits (66), Expect = 4.0
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 2/28 (7%)
Query: 248 CYVCKQRGVGACIQCHKTNCYAAFHVTC 275
C +C C +C + C
Sbjct: 96 CSICCSGETLLI--CGNPDCTRCYCFEC 121
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding
protein, transport protein; 1.04A {Streptococcus
pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Length = 401
Score = 29.7 bits (67), Expect = 4.0
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 46/127 (36%)
Query: 493 VDVIEVPDYA-------------DVIKQPMDLTTMTNKVKANQYLSL--EDFENDFNLMV 537
V V+ VP+ DV+ + KA + L +D+
Sbjct: 50 VKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGY 109
Query: 538 ENCLTYNEK----------DTIFY------KAGIK-------MKQVGGALINQAAKTLND 574
NEK I+Y + G+K + Q K +
Sbjct: 110 AEKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFE--------QLVKDIVA 161
Query: 575 AGFDQIG 581
G G
Sbjct: 162 KGQTPFG 168
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 28.6 bits (64), Expect = 4.4
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 412 PENGNITELYHELKYWQCLRQDLERARLLCELVRKRE 448
P I+ EL ++ L + + RKRE
Sbjct: 101 PRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRE 137
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 28.1 bits (63), Expect = 4.9
Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 412 PENGNITELYHELKYWQCLRQDLERARLLCELVRKR 447
++ + E +++ +L+ + +R+R
Sbjct: 76 NKDLAEEGVLEEAEFYNI----TSLIKLVKDKIRER 107
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 29.4 bits (65), Expect = 5.6
Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 10/92 (10%)
Query: 109 ELLMDRLEKECQFQMSHTQSQDIIDDEAVCCIC---NDGECQNSNVILFCDMCNLAVHQD 165
+ D + + ++E C IC + V C L H
Sbjct: 282 LRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAV 341
Query: 166 CYGVPYIPEGQWLCRRCLHTPSRAVDCVLCPN 197
C +W V CP
Sbjct: 342 CL-------EEWFKTLMDGKTFLEVSFGQCPF 366
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 29.2 bits (64), Expect = 6.5
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP 170
+ V C+C +I CDMC H C GV
Sbjct: 1 MASVPVYCLCRLPYDVTRFMI-ECDMCQDWFHGSCVGVE 38
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
g.43.1.1
Length = 67
Score = 26.5 bits (58), Expect = 6.8
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 138 CCICNDGE---CQNSNVILFCDMCNLAVHQD 165
CCICN+ C + L+C C H +
Sbjct: 11 CCICNEDATLRCAGCDGDLYCARCFREGHDN 41
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 28.8 bits (63), Expect = 7.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP 170
V C+C + ++ CD+C H C GV
Sbjct: 34 PPPPVYCVCRQPY-DVNRFMIECDICKDWFHGSCVGVE 70
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.0 bits (64), Expect = 7.7
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 110 LLMDRLEKECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV 169
++ ++ KEC T + + ++ I N+ + MC C
Sbjct: 139 IVGNKPPKECGDLCPGTMEEKPMCEK--TTINNEYNYRCWTTNRCQKMCP----STCGKR 192
Query: 170 PYIPEGQWLCRRCLHT---PSRAVDCVLCPN 197
+ CL + P CV C +
Sbjct: 193 ACTENNECCHPECLGSCSAPDNDTACVACRH 223
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding
domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
g.49.1.1
Length = 84
Score = 26.9 bits (59), Expect = 8.2
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 113 DRLEKECQFQMSHTQSQDIIDDEAVCCICNDGECQNSNVI--LFCDMCNLAVHQDCY 167
D +E M H + + A C +C D C + + C C VH C
Sbjct: 16 DIIEDADGIAMPHQWLEGNLPVSAKCTVC-DKTCGSVLRLQDWRCLWCKAMVHTSCK 71
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 27.4 bits (61), Expect = 8.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 567 QAAKTLNDAGFDQIGSILPGTSA 589
+A L AGF + I+ G SA
Sbjct: 97 KATTDLLHAGFTGVKDIVGGYSA 119
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 8.9
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 678 SAEEGGEDGEENSSCSECSSSCDS--SDSESGSSV 710
A G + +C EC G V
Sbjct: 10 RAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVV 44
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 27.8 bits (61), Expect = 9.8
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 248 CYVCKQRGVGACIQCHKTNCYAAFHVTC 275
C +C + C NC F V C
Sbjct: 82 CTICCGGR--EVLMCGNNNCCRCFCVEC 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,767,032
Number of extensions: 796161
Number of successful extensions: 2135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2049
Number of HSP's successfully gapped: 178
Length of query: 830
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 728
Effective length of database: 3,853,851
Effective search space: 2805603528
Effective search space used: 2805603528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.7 bits)