RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2279
(830 letters)
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 100 bits (250), Expect = 2e-25
Identities = 29/108 (26%), Positives = 47/108 (43%)
Query: 468 PLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLE 527
L+S+L +I+ ++ F PV+ V DY +I +PMDL T+ V+ Y S E
Sbjct: 26 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE 85
Query: 528 DFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTLNDA 575
+F L+V+N TYN + M + + + L
Sbjct: 86 EFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARL 133
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 96.9 bits (241), Expect = 1e-24
Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSL 526
P ++ + ++ ++ FL+PV+ EVPDY D IK+PMDL+TM K+++N+Y +
Sbjct: 2 GPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKM 61
Query: 527 EDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
EDF D L+ NC YN ++T +YK ++++
Sbjct: 62 EDFIYDARLVFNNCRMYNGENTSYYKYANRLEKF 95
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 93.5 bits (232), Expect = 2e-23
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSL 526
+ L + L L+ IK+ + F+EPV E PDY +VI+ P+DL TMT ++++ Y++
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 60
Query: 527 EDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
+ F D ++ NC YN D+ + + +++
Sbjct: 61 KLFVADLQRVIANCREYNPPDSEYCRCASALEKF 94
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 91.6 bits (227), Expect = 1e-22
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 467 NPLNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSL 526
+ L S L ++ +K+ + F+EPV E P Y +VI+ PMDL TM+ ++K Y+S
Sbjct: 12 DQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 71
Query: 527 EDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQA 568
+ F D + NC YN ++ +YK +++ + I +A
Sbjct: 72 KLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 91.2 bits (226), Expect = 2e-22
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 463 MIKLNPLNSLLLQLIDLIKARDTGDI-FLEPVDVI--EVPDYADVIKQPMDLTTMTNKVK 519
+ K L L+ ++ + +D + F +PVD +PDY D++K PMDL+T+ K+
Sbjct: 1 IFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD 60
Query: 520 ANQYLSLEDFENDFNLMVENCLTYNEKDTIFYKAGIKMKQV 560
QY + +D LM N YN K + YK K+ +V
Sbjct: 61 TGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEV 101
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 90.4 bits (224), Expect = 4e-22
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 469 LNSLLLQLIDLIKARDTGDIFLEPVDVIEVPDYADVIKQPMDLTTMTNKVKANQYLSLED 528
L++++ Q + A F PV+ VPDY VI PMDL T+ + ++Y S E
Sbjct: 14 LDNIVTQKM---MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRES 70
Query: 529 FENDFNLMVENCLTYNEKDTIFYKAGIKMKQVGGALINQAAKTL 572
F +D NL++ N + YN ++ + K ++ V + + + L
Sbjct: 71 FLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHL 114
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 76.2 bits (187), Expect = 2e-17
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 14/113 (12%)
Query: 711 SGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPV 770
S ++ V K G+PW+P++++
Sbjct: 1 SERVNYKPGMRVLTKMSGFPWWPSMVVTE-------------SKMTSVARKSKPKRAGTF 47
Query: 771 YLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
Y V+FF + + W + L PL ++ + + + KA K A
Sbjct: 48 YPVIFFPN-KEYLWTGSDSLTPLTSEAISQFLEKPKPKTASLIKAYKMAQSTP 99
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 67.2 bits (163), Expect = 2e-14
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP------YIPEGQWLCRRCLHT 185
++ C +C + N ++ C C+ HQDC+ P W C RC
Sbjct: 13 MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72
Query: 186 PSRAVD 191
R
Sbjct: 73 MKRMAQ 78
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 64.6 bits (157), Expect = 2e-13
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 21/104 (20%)
Query: 720 QLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYTEPVYLVLFFDTK 779
Q+VW K Y W+PA I NP+ I + + V FF +
Sbjct: 6 QIVWVKLGNYRWWPAEICNPRSVPLNI---------------QGLKHDLGDFPVFFFGS- 49
Query: 780 RTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
+ W+ + ++ P ++ K + + K KKA +EA
Sbjct: 50 HDYYWVHQGRVFPY-----VEGDKSFAEGQTSINKTFKKALEEA 88
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 57.7 bits (139), Expect = 5e-11
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 24/118 (20%)
Query: 708 SSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYT 767
S + ++ LV+AK +GYP +PA I A T
Sbjct: 2 SRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEA--------------------AVKST 41
Query: 768 EPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEALV 825
Y V FF T +L L P +E + +++ + + + V
Sbjct: 42 ANKYQVFFFGT-HETAFLGPKDLFPY---EESKEKFGKPNKRKGFSEGLWEIENNPTV 95
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 53.4 bits (128), Expect = 5e-10
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRC 182
A C +C + + ++ CD CN A H C +P+G+W C C
Sbjct: 1 ARCKVC--RKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 53.9 bits (129), Expect = 6e-10
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP-------YIPEGQWLCRRC 182
++ D A+ CIC + N+ ++ CD C H DC G+ ++C C
Sbjct: 10 EVYDPNALYCIC--RQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
Query: 183 --LHTPS 187
L PS
Sbjct: 68 TILSGPS 74
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 52.3 bits (125), Expect = 2e-09
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 131 IIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP--YIPEGQWLCRRCLHTPS 187
+DD IC CQ ++ C+ C H DC+ +P +W C C P
Sbjct: 2 TLDDS--ATIC--RVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 56
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 52.3 bits (125), Expect = 2e-09
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 129 QDIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPY--IPEGQWLCRRCLH 184
+ +D+ V C C + + +L CD C + H C G+ ++LC RC+
Sbjct: 9 ERGVDNWKVDCKCGTKD-DDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 50.0 bits (119), Expect = 1e-08
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 124 SHTQSQDIID-DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
S + + ID +E C+CN H C + Y P+G+W C +C
Sbjct: 3 SGSSGEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 62
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 48.9 bits (116), Expect = 3e-08
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVP---YIPEGQWLCRRCL--HTPS 187
C C + + I CD+C + H C + Q+ C C PS
Sbjct: 4 GSSGQCGACGESYAADEFWI-CCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62
Query: 188 RA 189
Sbjct: 63 SG 64
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 137
Score = 49.7 bits (118), Expect = 9e-08
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 25/117 (21%)
Query: 708 SSVSGSHTFEQLQLVWAKCRGYPWYPALIINPQMPLGYIHNGVPIPSPPEDVLALANNYT 767
+ F LVW K +G+ W+PA++++ +
Sbjct: 1 TEYQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKA-------------------TSKRQAM 41
Query: 768 EPVYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEAL 824
+ V +F + + +KL + L K + +KA L
Sbjct: 42 PGMRWVQWFGD-GKFSEISADKLVA--LGLFSQHFNLATFNK---LVSYRKAMYHTL 92
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 47.3 bits (112), Expect = 9e-08
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDC--YGVPYIPEGQWLCRRC 182
C +C DG +L CD C + H C +P IP G+WLC RC
Sbjct: 7 HHMEFCRVCKDGGE-----LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
Score = 25.7 bits (56), Expect = 5.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 248 CYVCKQRGVGACIQCHKTNCYAAFHVTC 275
C VCK G + C C +++H+ C
Sbjct: 12 CRVCKD--GGELLCCD--TCPSSYHIHC 35
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 47.8 bits (113), Expect = 1e-07
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 130 DIIDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQ-------WLCRRC 182
+ V C+C + +S + C++ H C +P P + C C
Sbjct: 10 PFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEIC 69
Query: 183 LHT--PSRA 189
T PS
Sbjct: 70 RLTSGPSSG 78
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 44.5 bits (105), Expect = 7e-07
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 135 EAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
E C+C+ D H C G+ P G+W C RC
Sbjct: 1 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 48
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 39.3 bits (91), Expect = 9e-05
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGV---PYIPEGQWLCRRC 182
+ V C+C N +I C +C H C G+ + + C C
Sbjct: 8 MALVPVYCLCRQPYNVNHFMI-ECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.4 bits (65), Expect = 0.26
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 134 DEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
D+ C C + +N ++ L ++C + + C G C C
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCV-DLLFVRGAGNCPEC 49
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 30.9 bits (69), Expect = 0.26
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 13/107 (12%)
Query: 81 DEEDASWLNIMNEQRKISNLPPLAIDTFELLMDRLEKECQFQMSHTQSQDIIDDEAVCCI 140
DEE ++ K E + ++ + D C +
Sbjct: 5 DEEKEIINRVIARAEK-----------METMEQERIGRLVDRLETMRKNVAGDGVNRCIL 53
Query: 141 CNDGECQNSNVILFCDMCNLAVHQDCYGV--PYIPEGQWLCRRCLHT 185
C + + + C+ C V C P WLC+ CL
Sbjct: 54 CGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 100
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 29.1 bits (65), Expect = 0.28
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 132 IDDEAVCCICNDGECQNSNVILFCDMCNLAVHQDC 166
+DD C +C E ++ F C H +C
Sbjct: 2 MDDGVECAVCLA-ELEDGEEARFLPRCGHGFHAEC 35
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 27.9 bits (61), Expect = 0.71
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 133 DDEAVCCICNDGECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
+D VC ICN+ C VH+ C C+ C
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 28.3 bits (63), Expect = 1.0
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 137 VCCICND--GECQNSNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRC 182
C IC D G ++ + C+ C + CY EG C +C
Sbjct: 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREGTQNCPQC 64
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 54
Score = 26.4 bits (58), Expect = 2.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 138 CCICNDGE---CQNSNVILFCDMCNLAVHQD 165
CCICN+ C + L+C C H +
Sbjct: 4 CCICNEDATLRCAGCDGDLYCARCFREGHDN 34
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 27.2 bits (60), Expect = 2.8
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 247 TCYVCKQRGVGACIQCHKTNCYAAFHVTCAQQAGLYMNMDTIRDHS 292
TC C++ G C C H CA +N DT
Sbjct: 49 TCDKCEEEGTIWSYHC--DECDFDLHAKCA------LNEDTKESGP 86
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 25.7 bits (56), Expect = 4.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 136 AVCCICNDGECQNSNVILFCDMCNLAVHQDC 166
C C + + C C L VH+ C
Sbjct: 16 HWCEYCANFMWGLIAQGVRCSDCGLNVHKQC 46
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 28.0 bits (62), Expect = 4.6
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 770 VYLVLFFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQE 822
+ +T L+ +G TDE ++M SR D ++ +++
Sbjct: 242 AIVNCVRNTPAFLAERLHRALKGIG-TDEFTLNRIMVSRSEIDLLDIRTEFKK 293
Score = 27.2 bits (60), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 787 RNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQEA 823
+ + +G TDE I ++ R A R+ + K YQ A
Sbjct: 28 QKAIRGIG-TDEKMLISILTERSNAQRQLIVKEYQAA 63
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 25.2 bits (55), Expect = 6.0
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 5/34 (14%)
Query: 138 CCICNDGECQNSNVILFCDMCNLAVHQDCYG-VP 170
C +C + C C L H C P
Sbjct: 17 CNVCQKSMIFG----VKCKHCRLKCHNKCTKEAP 46
>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 321
Score = 27.3 bits (60), Expect = 8.3
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 775 FFDTKRTWQWLPRNKLEPLGITDELDQIKLMESRKPADRKAVKKAYQE 822
+ + ++ G T+E ++M SR D +++ + E
Sbjct: 247 VKNKPLFFADKLYKSMKGAG-TEEKTLTRIMVSRSEIDLLNIRREFIE 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,138,557
Number of extensions: 156100
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 64
Length of query: 830
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 737
Effective length of database: 1,130,706
Effective search space: 833330322
Effective search space used: 833330322
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)