BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2280
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
 pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
 pdb|2QFA|A Chain A, Crystal Structure Of A Survivin-Borealin-Incenp Core
           Complex
 pdb|4A0I|A Chain A, Crystal Structure Of Survivin Bound To The N-Terminal Tail
           Of Hsgo1
 pdb|4A0I|B Chain B, Crystal Structure Of Survivin Bound To The N-Terminal Tail
           Of Hsgo1
 pdb|4A0J|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
           N- Terminal Tail Of Histone H3
 pdb|4A0J|B Chain B, Crystal Structure Of Survivin Bound To The Phosphorylated
           N- Terminal Tail Of Histone H3
 pdb|4A0N|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
           N- Terminal Tail Of Histone H3
          Length = 142

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 17  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 76

Query: 94  HKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKI 153
           HK H   C F+ + K+      + EF+ L+    KNK+ +     K+E    F++   K+
Sbjct: 77  HKKHSSGCAFLSV-KKQFEELTLGEFLKLDRERAKNKIAKETNNKKKE----FEETAKKV 131

Query: 154 TEKINRVA 161
              I ++A
Sbjct: 132 RRAIEQLA 139


>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex
          Length = 145

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 14/130 (10%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 20  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 79

Query: 94  HKSHKPDCPFVQLNKR--DLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKA 151
           HK H   C F+ + K+  +LT   + EF+ L+    KNK+ +     K+E    F++   
Sbjct: 80  HKKHSSGCAFLSVKKQFEELT---LGEFLKLDRERAKNKIAKETNNKKKE----FEETAK 132

Query: 152 KITEKINRVA 161
           K+   I ++A
Sbjct: 133 KVRRAIEQLA 142


>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3
           Phosphorylated H3(1-15) Peptide
 pdb|3UIG|B Chain B, Crystal Structure Of Human Survivin In Complex With T3
           Phosphorylated H3(1-15) Peptide
 pdb|3UIH|A Chain A, Crystal Structure Of Human Survivin In Complex With
           SmacDIABLO(1-15) Peptide
 pdb|3UIH|B Chain B, Crystal Structure Of Human Survivin In Complex With
           SmacDIABLO(1-15) Peptide
 pdb|3UII|A Chain A, Crystal Structure Of Human Survivin In Complex With
           H3(1-10) Peptide
 pdb|3UII|B Chain B, Crystal Structure Of Human Survivin In Complex With
           H3(1-10) Peptide
          Length = 143

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 18  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 77

Query: 94  HKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKI 153
           HK H   C F+ + K+      + EF+ L+    KNK+ +     K+E    F++   K+
Sbjct: 78  HKKHSSGCAFLSV-KKQFEELTLGEFLKLDRERAKNKIAKETNNKKKE----FEETAKKV 132

Query: 154 TEKINRVA 161
              I ++A
Sbjct: 133 RRAIEQLA 140


>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
           Phosphorylated On Threonine-3.
 pdb|3UED|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
           Phosphorylated On Threonine-3 (C2 Space Group).
 pdb|3UED|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
           Phosphorylated On Threonine-3 (C2 Space Group).
 pdb|3UEF|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
           (C2 Space Group).
 pdb|3UEF|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
           (C2 Space Group)
          Length = 146

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 14/130 (10%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 21  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 80

Query: 94  HKSHKPDCPFVQLNKR--DLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKA 151
           HK H   C F+ + K+  +LT   + EF+ L+    KNK+ +     K+E    F++   
Sbjct: 81  HKKHSSGCAFLSVKKQFEELT---LGEFLKLDRERAKNKIAKETNNKKKE----FEETAK 133

Query: 152 KITEKINRVA 161
           K+   I ++A
Sbjct: 134 KVRRAIEQLA 143


>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
           Protein Survivin
 pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
           Protein Survivin
          Length = 142

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 17  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIEE 76

Query: 94  HKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKI 153
           HK H   C F+ + K+      + EF+ L+    KNK+ +     K+E    F++   K+
Sbjct: 77  HKKHSSGCAFLSV-KKQFEELTLGEFLKLDRERAKNKIAKETNNKKKE----FEETAKKV 131

Query: 154 TEKINRVA 161
              I ++A
Sbjct: 132 RRAIEQLA 139


>pdb|1M4M|A Chain A, Mouse Survivin
          Length = 140

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 40  RLATFTNWTF-KSGNCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDEH 94
           R+ATF NW F +   CT E MA AGF       + D  +C FC+KEL+GWE  D P +EH
Sbjct: 18  RIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNPIEEH 77

Query: 95  KSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMM-ETLQQGKE 140
           + H P C F+ + K+ +    + EF+ L+    KNK+  ET  + KE
Sbjct: 78  RKHSPGCAFLTV-KKQMEELTVSEFLKLDRQRAKNKIAKETNNKQKE 123


>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant
 pdb|3UEI|B Chain B, Crystal Structure Of Human Survivin E65a Mutant
          Length = 146

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 14/130 (10%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL GWE  D P +E
Sbjct: 21  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIEE 80

Query: 94  HKSHKPDCPFVQLNKR--DLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKA 151
           HK H   C F+ + K+  +LT   + EF+ L+    KNK+ +     K+E    F++   
Sbjct: 81  HKKHSSGCAFLSVKKQFEELT---LGEFLKLDRERAKNKIAKETNNKKKE----FEETAK 133

Query: 152 KITEKINRVA 161
           K+   I ++A
Sbjct: 134 KVRRAIEQLA 143


>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To
           N-Terminal Histone H3
 pdb|3UEE|C Chain C, Crystal Structure Of Human Survivin K62a Mutant Bound To
           N-Terminal Histone H3
 pdb|3UEG|A Chain A, Crystal Structure Of Human Survivin K62a Mutant
 pdb|3UEG|B Chain B, Crystal Structure Of Human Survivin K62a Mutant
          Length = 146

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 14/130 (10%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+ EL+GWE  D P +E
Sbjct: 21  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIEE 80

Query: 94  HKSHKPDCPFVQLNKR--DLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKA 151
           HK H   C F+ + K+  +LT   + EF+ L+    KNK+ +     K+E    F++   
Sbjct: 81  HKKHSSGCAFLSVKKQFEELT---LGEFLKLDRERAKNKIAKETNNKKKE----FEETAK 133

Query: 152 KITEKINRVA 161
           K+   I ++A
Sbjct: 134 KVRRAIEQLA 143


>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant
 pdb|3UEH|B Chain B, Crystal Structure Of Human Survivin H80a Mutant
          Length = 146

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 10/128 (7%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 21  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 80

Query: 94  HKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKI 153
           HK     C F+ + K+      + EF+ L+    KNK+ +     K+E    F++   K+
Sbjct: 81  HKKASSGCAFLSV-KKQFEELTLGEFLKLDRERAKNKIAKETNNKKKE----FEETAKKV 135

Query: 154 TEKINRVA 161
              I ++A
Sbjct: 136 RRAIEQLA 143


>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin
 pdb|1XOX|B Chain B, Solution Structure Of Human Survivin
          Length = 117

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 17  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 76

Query: 94  HKSHKPDCPFVQLNKR--DLTTCHIDEFIVLNSAVVKNKM 131
           HK H   C F+ + K+  +LT   + EF+ L+    KNK+
Sbjct: 77  HKKHSSGCAFLSVKKQFEELT---LGEFLKLDRERAKNKI 113


>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin
           (1-120)
 pdb|2RAX|E Chain E, Crystal Structure Of Borealin (20-78) Bound To Survivin
           (1-120)
 pdb|2RAX|X Chain X, Crystal Structure Of Borealin (20-78) Bound To Survivin
           (1-120)
          Length = 123

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+KEL+GWE  D P +E
Sbjct: 20  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEE 79

Query: 94  HKSHKPDCPFVQLNKR--DLTTCHIDEFIVLNSAVVKNKM 131
           HK H   C F+ + K+  +LT   + EF+ L+    KNK+
Sbjct: 80  HKKHSSGCAFLSVKKQFEELT---LGEFLKLDRERAKNKI 116


>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
           COMPLEX WITH SmacDIABLO(1-15) Peptide
 pdb|3UIJ|B Chain B, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
           COMPLEX WITH SmacDIABLO(1-15) Peptide
 pdb|3UIK|A Chain A, Crystal Structure Of Human Survivin Mutant K62yH80W IN
           COMPLEX WITH H3(1-10) Peptide
 pdb|3UIK|B Chain B, Crystal Structure Of Human Survivin Mutant K62yH80W IN
           COMPLEX WITH H3(1-10) Peptide
          Length = 143

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 39  NRLATFTNWTFKSG-NCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTDYPWDE 93
           +R++TF NW F  G  CT E MA AGF       + D  +C FC+ EL+GWE  D P +E
Sbjct: 18  HRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIEE 77

Query: 94  HKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKI 153
           HK     C F+ + K+      + EF+ L+    KNK+ +     K+E    F++   K+
Sbjct: 78  HKKWSSGCAFLSV-KKQFEELTLGEFLKLDRERAKNKIAKETNNKKKE----FEETAKKV 132

Query: 154 TEKINRVA 161
              I ++A
Sbjct: 133 RRAIEQLA 140


>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB0|B Chain B, Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB0|C Chain C, Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB0|D Chain D, Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB0|E Chain E, Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB0|F Chain F, Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB1|A Chain A, The Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB1|B Chain B, The Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB1|C Chain C, The Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB1|D Chain D, The Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB1|E Chain E, The Structure Of The Bir Domain Of Iap-Like Protein 2
 pdb|1XB1|F Chain F, The Structure Of The Bir Domain Of Iap-Like Protein 2
          Length = 108

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWE 85
           N+     M  Y  RL TF  W +   +   E +A AGFY I Q+D  +C  C   L  W+
Sbjct: 7   NLPRNPSMTGYEARLITFGTWMY---SVNKEQLARAGFYAIGQEDKVQCFHCGGGLANWK 63

Query: 86  VTDYPWDEHKSHKPDCPFV 104
             + PW++H    P C ++
Sbjct: 64  PKEDPWEQHAKWYPGCKYL 82


>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
           DERIVED From Smac
 pdb|1TW6|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
           DERIVED From Smac
          Length = 133

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RLA+F +W   +     E +A AGF+     D  +C FCY  L  W+  D PW EH    
Sbjct: 51  RLASFYDWPLTA-EVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWF 109

Query: 99  PDCPFVQLNK 108
           P C F+  +K
Sbjct: 110 PGCQFLLRSK 119


>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
           Peptide (avpw)
 pdb|2I3H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
           Peptide (avpw)
 pdb|2I3I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
           PEPTIDOMIMETIC
 pdb|2I3I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
           PEPTIDOMIMETIC
 pdb|3F7H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
           Peptidomimetic
 pdb|3F7H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
           Peptidomimetic
 pdb|3F7I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
           PEPTIDOMIMETIC
 pdb|3F7I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
           PEPTIDOMIMETIC
 pdb|3GT9|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
           Peptidomimetic
 pdb|3GT9|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
           Peptidomimetic
 pdb|3GTA|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
           PEPTIDOMIMETIC
 pdb|3GTA|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
           PEPTIDOMIMETIC
          Length = 133

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RLA+F +W   +     E +A AGF+     D  +C FCY  L  W+  D PW EH    
Sbjct: 51  RLASFYDWPLTA-EVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWF 109

Query: 99  PDCPFVQLNK 108
           P C F+  +K
Sbjct: 110 PGCQFLLRSK 119


>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXN|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXN|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXN|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXN|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXQ|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXQ|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXQ|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXQ|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OXQ|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (Ml-Iap)
 pdb|1OY7|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (ml-iap)
 pdb|1OY7|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (ml-iap)
 pdb|1OY7|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (ml-iap)
 pdb|1OY7|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (ml-iap)
 pdb|1OY7|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
           Melanoma Inhibitor Of Apoptosis (ml-iap)
          Length = 140

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RLA+F +W   +     E +A AGF+     D  +C FCY  L  W+  D PW EH    
Sbjct: 51  RLASFYDWPLTA-EVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWF 109

Query: 99  PDCPFVQLNK-RDLT 112
           P C F+  +K RD  
Sbjct: 110 PSCQFLLRSKGRDFV 124


>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To
           Gdc0152
 pdb|3UW5|B Chain B, Crystal Structure Of The Bir Domain Of Mliap Bound To
           Gdc0152
          Length = 116

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RLA+F +W   +     E +A AGF+     D  +C FCY  L  W+  D PW EH    
Sbjct: 34  RLASFYDWPLTA-EVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWF 92

Query: 99  PDCPFVQLNK 108
           P C F+  +K
Sbjct: 93  PGCQFLLRSK 102


>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A
           Peptidomimetic
 pdb|3F7G|B Chain B, Structure Of The Bir Domain From Ml-Iap Bound To A
           Peptidomimetic
 pdb|3F7G|C Chain C, Structure Of The Bir Domain From Ml-Iap Bound To A
           Peptidomimetic
 pdb|3F7G|D Chain D, Structure Of The Bir Domain From Ml-Iap Bound To A
           Peptidomimetic
 pdb|3F7G|E Chain E, Structure Of The Bir Domain From Ml-Iap Bound To A
           Peptidomimetic
          Length = 140

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RLA+F +W   +     E +A AGF+     D  +C FCY  L  W+  D PW EH    
Sbjct: 51  RLASFYDWPLTA-EVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWF 109

Query: 99  PDCPFVQLNK-RDLT 112
           P C F+  +K RD  
Sbjct: 110 PSCQFLLRSKGRDFV 124


>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap
          Length = 117

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 19  LLQALQMYNIE----IASPMMFYTN-RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCT 72
           LL+  Q+ +I       +P M+    RL +F NW     + T   +A AG Y     D  
Sbjct: 17  LLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWP-DYAHLTPRELASAGLYYTGIGDQV 75

Query: 73  KCVFCYKELDGWEVTDYPWDEHKSHKPDCPFV 104
           +C  C  +L  WE  D  W EH+ H P+C FV
Sbjct: 76  QCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 107


>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
           3
 pdb|1I3O|F Chain F, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
           3
          Length = 121

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 19  LLQALQMYNIE----IASPMMFYTN-RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCT 72
           LL+  Q+ +I       +P M+    RL +F NW     + T   +A AG Y     D  
Sbjct: 21  LLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWP-DYAHLTPRELASAGLYYTGIGDQV 79

Query: 73  KCVFCYKELDGWEVTDYPWDEHKSHKPDCPFV 104
           +C  C  +L  WE  D  W EH+ H P+C FV
Sbjct: 80  QCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 111


>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|B Chain B, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|C Chain C, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|D Chain D, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|E Chain E, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
 pdb|3SIQ|F Chain F, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
          Length = 136

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RL TFT+W           +A  G Y     D  KC FC  E+  WE  D P  EH+   
Sbjct: 40  RLKTFTDWPLDW--LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWS 97

Query: 99  PDCPFVQ 105
           P+CP ++
Sbjct: 98  PNCPLLR 104


>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac005
 pdb|3CLX|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac005
 pdb|3CLX|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac005
 pdb|3CLX|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac005
 pdb|3CM2|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|E Chain E, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|F Chain F, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|G Chain G, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|H Chain H, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|I Chain I, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM2|J Chain J, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound, Smac010
 pdb|3CM7|C Chain C, Crystal Structure Of Xiap-Bir3 Domain In Complex With
           Smac- Mimetic Compuond, Smac005
 pdb|3CM7|A Chain A, Crystal Structure Of Xiap-Bir3 Domain In Complex With
           Smac- Mimetic Compuond, Smac005
 pdb|3CM7|B Chain B, Crystal Structure Of Xiap-Bir3 Domain In Complex With
           Smac- Mimetic Compuond, Smac005
 pdb|3CM7|D Chain D, Crystal Structure Of Xiap-Bir3 Domain In Complex With
           Smac- Mimetic Compuond, Smac005
          Length = 130

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 29  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 85

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 86  PSEDPWEQHAKWYPGCKYL 104


>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
           Repeat-Containing 1 (Birc1)
          Length = 106

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGF-YLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RLA+F NW F     +   ++ AGF +  + D  +C  C   L  WE  D PW EH    
Sbjct: 24  RLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWF 83

Query: 99  PDCPFVQLNK 108
           P C F++  K
Sbjct: 84  PKCEFLRSKK 93


>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
           Promotes E3 Ligase Activation Via Dimerization
          Length = 345

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 34  MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
           M  +  R+ TF  W   S     E +A AGFY + ++D  KC  C   L  WE  D PW 
Sbjct: 3   MQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61

Query: 93  EHKSHKPDCPFV 104
           EH    P C F+
Sbjct: 62  EHAKWFPRCEFL 73


>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
 pdb|1G73|D Chain D, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
          Length = 121

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 18  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 74

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 75  PSEDPWEQHAKWYPGCKYL 93


>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|B Chain B, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|C Chain C, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|D Chain D, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|E Chain E, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|F Chain F, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|G Chain G, Crystal Structure Of Xiap Bir3 With T3256336
 pdb|4HY0|H Chain H, Crystal Structure Of Xiap Bir3 With T3256336
          Length = 125

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 23  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 79

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 80  PSEDPWEQHAKWYPGCKYL 98


>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO
           Complexed To The Bir3 Domain Of Xiap
 pdb|1TFQ|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
           Interaction Complexed To The Bir3 Domain Of Xiap
 pdb|1TFT|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
           Interaction Complexed To The Bir3 Domain Of Xiap
          Length = 117

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 16  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 72

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 73  PSEDPWEQHAKWYPGCKYL 91


>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
           Bir3
          Length = 98

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 3   NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 59

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 60  PSEDPWEQHAKWYPGCKYL 78


>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide
 pdb|1SE0|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Grim Peptide
          Length = 116

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RL TFT+W           +A  G Y     D  KC FC  E+  WE  D P  EH+   
Sbjct: 18  RLKTFTDWPLDW--LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWS 75

Query: 99  PDCPFVQ 105
           P+CP ++
Sbjct: 76  PNCPLLR 82


>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex
 pdb|1I4O|D Chain D, Crystal Structure Of The XiapCASPASE-7 Complex
          Length = 141

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 19  LLQALQMYNIE----IASPMMFYTN-RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCT 72
           LL+  Q+ +I       +P M+    RL +F NW     + T   +A AG Y     D  
Sbjct: 21  LLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWP-DYAHLTPRELASAGLYYTGIGDQV 79

Query: 73  KCVFCYKELDGWEVTDYPWDEHKSHKPDCPFV 104
           +C  C  +L  WE  D  W EH+ H P+C FV
Sbjct: 80  QCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 111


>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap
          Length = 120

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 19  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 75

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 76  PSEDPWEQHAKWYPGCKYL 94


>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound
 pdb|3EYL|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
           Smac-Mimetic Compound
 pdb|3G76|A Chain A, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|B Chain B, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|C Chain C, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|D Chain D, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|E Chain E, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|F Chain F, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|G Chain G, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|3G76|H Chain H, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
           Compound
 pdb|4EC4|A Chain A, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|B Chain B, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|C Chain C, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|D Chain D, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|E Chain E, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|J Chain J, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|F Chain F, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|G Chain G, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|K Chain K, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
 pdb|4EC4|L Chain L, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
          Length = 122

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 15  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 71

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 72  PSEDPWEQHAKWYPGCKYL 90


>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic
          Length = 116

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 15  NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 71

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 72  PSEDPWEQHAKWYPGCKYL 90


>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex
 pdb|3SIP|F Chain F, Crystal Structure Of Drice And Diap1-Bir1 Complex
          Length = 115

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 40  RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCTKCVFCYKELDGWEVTDYPWDEHKSHK 98
           RL TFT+W           +A  G Y     D  KC FC  E+  WE  D P  EH+   
Sbjct: 17  RLKTFTDWPLDW--LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWS 74

Query: 99  PDCPFVQ 105
           P+CP ++
Sbjct: 75  PNCPLLR 81


>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap
          Length = 106

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 7   NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 63

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 64  PSEDPWEQHAKWYPGCKYL 82


>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap
 pdb|2OPZ|B Chain B, Avpf Bound To Bir3-Xiap
 pdb|2OPZ|C Chain C, Avpf Bound To Bir3-Xiap
 pdb|2OPZ|D Chain D, Avpf Bound To Bir3-Xiap
          Length = 109

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 7   NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 63

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 64  PSEDPWEQHAKWYPGCKYL 82


>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac
           Mimetic
          Length = 96

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 27  NIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWE 85
           N+     M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+
Sbjct: 6   NLPRNPSMADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 62

Query: 86  VTDYPWDEHKSHKPDCPFV 104
            ++ PW++H    P C ++
Sbjct: 63  PSEDPWEQHAKWYPGCKYL 81


>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap
 pdb|1I51|F Chain F, Crystal Structure Of Caspase-7 Complexed With Xiap
          Length = 117

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 19  LLQALQMYNIE----IASPMMFYTN-RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCT 72
           LL+  Q+ +I       +P M+    RL +F NW     + T   +A AG Y     D  
Sbjct: 17  LLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWP-DYAHLTPRELASAGLYYTGIGDQV 75

Query: 73  KCVFCYKELDGWEVTDYPWDEHKSHKPDCPFV 104
           +C  C  +L  WE  D  W EH+ H P+C FV
Sbjct: 76  QCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107


>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7  XIAP-Bir2 Complex
 pdb|1KMC|D Chain D, Crystal Structure Of The Caspase-7  XIAP-Bir2 Complex
          Length = 119

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 19  LLQALQMYNIE----IASPMMFYTN-RLATFTNWTFKSGNCTAEHMAHAGFYLIQ-DDCT 72
           LL+  Q+ +I       +P M+    RL +F NW     + T   +A AG Y     D  
Sbjct: 17  LLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWP-DYAHLTPRELASAGLYYTGIGDQV 75

Query: 73  KCVFCYKELDGWEVTDYPWDEHKSHKPDCPFV 104
           +C  C  +L  WE  D  W EH+ H P+C FV
Sbjct: 76  QCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107


>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3
 pdb|3HL5|B Chain B, Crystal Structure Of Xiap Bir3 With Cs3
          Length = 95

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 34  MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY-LIQDDCTKCVFCYKELDGWEVTDYPWD 92
           M  Y  R+ TF  W +   +   E +A AGFY L + D  KC  C   L  W+ ++ PW+
Sbjct: 11  MADYEARIFTFGTWIY---SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWE 67

Query: 93  EHKSHKPDCPFV 104
           +H    P C ++
Sbjct: 68  QHAKWYPGCKYL 79


>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac037
 pdb|3MUP|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac037
 pdb|3MUP|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac037
 pdb|3MUP|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac037
 pdb|3OZ1|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac066
 pdb|3OZ1|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac066
 pdb|3OZ1|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac066
 pdb|3OZ1|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
           Compound Smac066
 pdb|4EB9|A Chain A, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
 pdb|4EB9|B Chain B, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
 pdb|4EB9|C Chain C, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
 pdb|4EB9|D Chain D, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
          Length = 122

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 34  MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
           M  +  R+ TF  W   S     E +A AGFY + ++D  KC  C   L  WE  D PW 
Sbjct: 17  MQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 75

Query: 93  EHKSHKPDCPFV 104
           EH    P C F+
Sbjct: 76  EHAKWFPRCEFL 87


>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
 pdb|2QRA|C Chain C, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
 pdb|2QRA|B Chain B, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
 pdb|2QRA|A Chain A, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
          Length = 111

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 39  NRLATFTNWTFKSGN-CTAEHMAHAGF-YLIQDDCTKCVFCYKELDGWEVTDYPWDEHKS 96
           NRL TF N  F SG+  +A  +A AGF Y  + D  +C  C+  +D W+  D     H+ 
Sbjct: 40  NRLKTFAN--FPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 97

Query: 97  HKPDCPFVQ 105
             P+C F+ 
Sbjct: 98  VSPNCRFIN 106


>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex
 pdb|2POP|D Chain D, The Crystal Structure Of Tab1 And Bir1 Complex
          Length = 95

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 39  NRLATFTNWTFKSGN-CTAEHMAHAGF-YLIQDDCTKCVFCYKELDGWEVTDYPWDEHKS 96
           NRL TF N  F SG+  +A  +A AGF Y  + D  +C  C+  +D W+  D     H+ 
Sbjct: 23  NRLKTFAN--FPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80

Query: 97  HKPDCPFVQ 105
             P+C F+ 
Sbjct: 81  VSPNCRFIN 89


>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form)
          Length = 94

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 39  NRLATFTNWTFKSGN-CTAEHMAHAGF-YLIQDDCTKCVFCYKELDGWEVTDYPWDEHKS 96
           NRL TF N  F SG+  +A  +A AGF Y  + D  +C  C+  +D W+  D     H+ 
Sbjct: 23  NRLKTFAN--FPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80

Query: 97  HKPDCPFVQ 105
             P+C F+ 
Sbjct: 81  VSPNCRFIN 89


>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis
           (Iap) Repeat
          Length = 101

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 31  ASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDY 89
            S M  +  R+ TF  W   S     E +A AGFY + ++D  KC  C   L  WE  D 
Sbjct: 1   GSHMQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDD 59

Query: 90  PWDEHKSHKPDCPFV 104
           PW EH    P C F+
Sbjct: 60  PWVEHAKWFPRCEFL 74


>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152
          Length = 92

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 31  ASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDY 89
            S M  +  R+ TF  W   S     E +A AGFY + ++D  KC  C   L  WE  D 
Sbjct: 1   GSHMQTHAARMRTFMYWP-SSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDD 59

Query: 90  PWDEHKSHKPDCPFV 104
           PW EH    P C F+
Sbjct: 60  PWVEHAKWFPGCEFL 74


>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1
 pdb|3M1D|B Chain B, Structure Of Bir1 From Ciap1
          Length = 85

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 40  RLATFTNWTFKSGNCTAEH-MAHAGFYLIQ-DDCTKCVFCYKELDGWEVTDYPWDEHKSH 97
           R++T++  TF +G   +E  +A AGFY    +D  KC  C   LD W++ D P  +HK  
Sbjct: 15  RMSTYS--TFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQL 72

Query: 98  KPDCPFVQ 105
            P C F+Q
Sbjct: 73  YPSCSFIQ 80


>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
 pdb|4HY4|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
 pdb|4HY5|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
 pdb|4HY5|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
          Length = 115

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 34  MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
           M  +  R+ TF  W   S     E +A AGFY + ++D  KC  C   L  WE  D PW 
Sbjct: 29  MQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 87

Query: 93  EHKSHKPDCPFV 104
           EH    P C F+
Sbjct: 88  EHAKWFPRCEFL 99


>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From
           Caspase- 9 (Atpfqe)
 pdb|3D9T|B Chain B, Ciap1-Bir3 In Complex With N-Terminal Peptide From
           Caspase- 9 (Atpfqe)
 pdb|3D9U|A Chain A, The Bir3 Domain Of Ciap1 In Complex With The N Terminal
           Peptide From SmacDIABLO (AVPIAQ)
          Length = 97

 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 34  MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
           M  +  R+ TF  W   S     E +A AGFY + ++D  KC  C   L  WE  D PW 
Sbjct: 11  MQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 69

Query: 93  EHKSHKPDCPFV 104
           EH    P C F+
Sbjct: 70  EHAKWFPRCEFL 81


>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex
 pdb|3M0D|D Chain D, Crystal Structure Of The Traf1:traf2:ciap2 Complex
          Length = 75

 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 40  RLATFTNWTFKSGNCTAEH-MAHAGFYLIQ-DDCTKCVFCYKELDGWEVTDYPWDEHKSH 97
           R++T++  TF +G   +E  +A AGFY    +D  KC  C   LD W+  D P ++HK  
Sbjct: 8   RMSTYS--TFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKKL 65

Query: 98  KPDCPFVQ 105
            P C FVQ
Sbjct: 66  YPSCRFVQ 73


>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
           Repeat-Containing 3 (Birc3)
 pdb|2UVL|B Chain B, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
           Repeat-Containing 3 (Birc3)
          Length = 96

 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 34  MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLIQD-DCTKCVFCYKELDGWEVTDYPWD 92
           M  +  R  TF NW   S     E +A AGFY + + D  KC  C   L  WE  D PW 
Sbjct: 11  MQTHAARFKTFFNWP-SSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWV 69

Query: 93  EHKSHKPDCPFV 104
           +H    P C ++
Sbjct: 70  QHAKWFPRCEYL 81


>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex
 pdb|1JD5|A Chain A, Crystal Structure Of Diap1-Bir2GRIM
 pdb|1JD4|A Chain A, Crystal Structure Of Diap1-Bir2
 pdb|1JD4|B Chain B, Crystal Structure Of Diap1-Bir2
 pdb|1Q4Q|A Chain A, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|B Chain B, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|C Chain C, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|D Chain D, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|E Chain E, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|F Chain F, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|G Chain G, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|H Chain H, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|I Chain I, Crystal Structure Of A Diap1-Dronc Complex
 pdb|1Q4Q|J Chain J, Crystal Structure Of A Diap1-Dronc Complex
          Length = 124

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 38  TNRLATFTNWTFKSGNCTAEHMAHAGF-YLIQDDCTKCVFCYKELDGWEVTDYPWDEHKS 96
           T RL TF  W  ++       +A AGF Y    D  +C  C   L  W   D PW++H  
Sbjct: 27  TARLRTFEAWP-RNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHAL 85

Query: 97  HKPDCPFVQLNKRDL 111
               C FV+L K  L
Sbjct: 86  WLSQCRFVKLMKGQL 100


>pdb|4EPZ|A Chain A, Crystal Structure Of A Transcription Anti-Terminator
           Antagonist Upxz (Bacuni_04315) From Bacteroides
           Uniformis Atcc 8492 At 1.68 A Resolution
          Length = 162

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 11  DYAKKEKALLQALQMYNIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLIQ-- 68
           D  +K++ +L   ++YNI    P      RL T   W +       E +AH    LI+  
Sbjct: 79  DKERKKQVILD--RIYNIXSQLPASLLKXRLLT---WGYSE--TYDEELAHEAHQLIETW 131

Query: 69  ---DDCTKCVFCYKELDGWEVTDYPWDE 93
              D   +     +EL  +E   YPW+E
Sbjct: 132 NISDLTDEQKEIIEELRNFEENQYPWEE 159


>pdb|1NCF|A Chain A, A New Paradigm For Tumor Necrosis Factor Signalling
 pdb|1NCF|B Chain B, A New Paradigm For Tumor Necrosis Factor Signalling
 pdb|1EXT|A Chain A, Extracellular Domain Of The 55kda Tumor Necrosis Factor
           Receptor. Crystallized At Ph3.7 In P 21 21 21.
 pdb|1EXT|B Chain B, Extracellular Domain Of The 55kda Tumor Necrosis Factor
           Receptor. Crystallized At Ph3.7 In P 21 21 21.
 pdb|1FT4|A Chain A, Photochemically-Enhanced Binding Of Small Molecules To The
           Tumor Necrosis Factor Receptor-1
 pdb|1FT4|B Chain B, Photochemically-Enhanced Binding Of Small Molecules To The
           Tumor Necrosis Factor Receptor-1
          Length = 162

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 60  AHAGFYLIQDDCTKCVFCYKELD 82
            HAGF+L +++C  C  C K L+
Sbjct: 129 CHAGFFLRENECVSCSNCKKSLE 151


>pdb|3KY7|A Chain A, 2.35 Angstrom Resolution Crystal Structure Of A Putative
          Trna (Guanine-7-)-Methyltransferase (Trmd) From
          Staphylococcus Aureus Subsp. Aureus Mrsa252
          Length = 269

 Score = 26.6 bits (57), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/12 (75%), Positives = 12/12 (100%)

Query: 2  VQLNTINFRDYA 13
          +Q+NT+NFRDYA
Sbjct: 55 LQINTVNFRDYA 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,625,907
Number of Sequences: 62578
Number of extensions: 176454
Number of successful extensions: 604
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 59
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)