RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2280
(162 letters)
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo
sapiens}
Length = 106
Score = 101 bits (252), Expect = 1e-28
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
RLA+F NW F + ++ AGF + D +C C L WE D PW
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 93 EHKSHKPDCPFVQLNK 108
EH P C F++ K
Sbjct: 78 EHAKWFPKCEFLRSKK 93
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle,
long helix, protein complex, alternative splicing,
apoptosis, cell cycle, cell division; HET: MES; 1.40A
{Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A
4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A*
3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A*
3uik_A 3uij_A 1m4m_A 2rax_A ...
Length = 142
Score = 101 bits (253), Expect = 1e-28
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 32 SPMMFYTNRLATFTNWTF-KSGNCTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEV 86
+R++TF NW F + CT E MA AGF + D +C FC+KEL+GWE
Sbjct: 10 WQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEP 69
Query: 87 TDYPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRM 145
D P +EHK H C F+ + K+ + EF+ L+ KNK+ + K+E
Sbjct: 70 DDDPIEEHKKHSSGCAFLSVKKQFEELT-LGEFLKLDRERAKNKIAKETNNKKKEFEET 127
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger,
apoptosis, cytoplasm, metal-binding, polymorphism, zinc,
zinc-finger, alternative splicing, hydrolase, protease;
1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A*
2uvl_A
Length = 97
Score = 97.2 bits (242), Expect = 2e-27
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M + R+ TF W S E +A AGFY + ++D KC C L WE D PW
Sbjct: 11 MQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 69
Query: 93 EHKSHKPDCPFVQLNKRDLTTCHI 116
EH P C F+ K I
Sbjct: 70 EHAKWFPRCEFLIRMKGQEFVDEI 93
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small
molecule drug discovery, structur drug design, ligase,
metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB:
1nw9_A 2vsl_A
Length = 95
Score = 96.1 bits (239), Expect = 7e-27
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M Y R+ TF W + E +A AGFY + + D KC C L W+ ++ PW+
Sbjct: 11 MADYEARIFTFGTWIYS---VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWE 67
Query: 93 EHKSHKPDCPFVQLNKRDLTTCHI 116
+H P C ++ K +I
Sbjct: 68 QHAKWYPGCKYLLEQKGQEYINNI 91
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A
3sip_E
Length = 116
Score = 96.6 bits (240), Expect = 8e-27
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
+ RL TFT+W +A G Y D KC FC E+ WE D P
Sbjct: 12 LNREETRLKTFTDWPLD--WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 69
Query: 93 EHKSHKPDCPFVQLNK 108
EH+ P+CP ++
Sbjct: 70 EHQRWSPNCPLLRRRT 85
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4;
protease-inhibitor, apoptosis-hydrolase complex; 2.40A
{Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Length = 141
Score = 97.1 bits (241), Expect = 1e-26
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M RL +F NW + T +A AG Y D +C C +L WE D W
Sbjct: 41 MYSEEARLKSFQNWP-DYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWS 99
Query: 93 EHKSHKPDCPFVQLNKRDLTT 113
EH+ H P+C FV ++ +
Sbjct: 100 EHRRHFPNCFFVLGRNLNIRS 120
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif,
apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB:
3oz1_A*
Length = 122
Score = 96.2 bits (239), Expect = 1e-26
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M + R+ TF W S E +A AGFY + ++D KC C L WE D PW
Sbjct: 17 MQTHAARMRTFMYWP-SSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 75
Query: 93 EHKSHKPDCPFVQLNKRDLTTCHIDE 118
EH P C F+ K I
Sbjct: 76 EHAKWFPRCEFLIRMKGQEFVDEIQG 101
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle,
zinc-binding domain, apoptosis/apoptosis inhibitor
complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB:
3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A*
3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Length = 121
Score = 95.8 bits (238), Expect = 2e-26
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M Y R+ TF W + E +A AGFY + + D KC C L W+ ++ PW+
Sbjct: 25 MADYEARIFTFGTWIYS---VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWE 81
Query: 93 EHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVK 128
+H P C ++ K +I L +V+
Sbjct: 82 QHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVR 117
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 95.9 bits (238), Expect = 2e-26
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
+ RL TFT+W +A G Y D KC FC E+ WE D P
Sbjct: 34 LNREETRLKTFTDWPLD--WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 91
Query: 93 EHKSHKPDCPFVQLNK 108
EH+ P+CP ++
Sbjct: 92 EHQRWSPNCPLLRRRT 107
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling
protein/apoptosis complex; 1.80A {Homo sapiens} PDB:
2pop_B
Length = 94
Score = 94.6 bits (235), Expect = 3e-26
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
+ NRL TF N+ S +A +A AGF + D +C C+ +D W+ D
Sbjct: 18 FVEEFNRLKTFANFPSGS-PVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVG 76
Query: 93 EHKSHKPDCPFVQ 105
H+ P+C F+
Sbjct: 77 RHRKVSPNCRFIN 89
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A
1jd6_A 1q4q_A
Length = 124
Score = 95.4 bits (237), Expect = 3e-26
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
T RL TF W ++ +A AGF+ D +C C L W D PW+
Sbjct: 23 YAIETARLRTFEAWP-RNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWE 81
Query: 93 EHKSHKPDCPFVQLNK 108
+H C FV+L K
Sbjct: 82 QHALWLSQCRFVKLMK 97
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis,
cytoplasm, polymorphism, zinc, zinc-FIN metal binding
protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Length = 85
Score = 93.7 bits (233), Expect = 4e-26
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
R++T++ + + +A AGFY +D KC C LD W++ D P
Sbjct: 9 FSCELYRMSTYSTFP-AGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQ 67
Query: 93 EHKSHKPDCPFVQ 105
+HK P C F+Q
Sbjct: 68 KHKQLYPSCSFIQ 80
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor;
apoptosis, signaling protein, zinc binding; 2.50A {Homo
sapiens}
Length = 111
Score = 93.9 bits (233), Expect = 8e-26
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
+ NRL TF N+ S +A +A AGF + D +C C+ +D W+ D
Sbjct: 35 FVEEFNRLKTFANFPSGS-PVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVG 93
Query: 93 EHKSHKPDCPFVQ 105
H+ P+C F+
Sbjct: 94 RHRKVSPNCRFIN 106
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide
complex, apoptosis inhibition, peptidomimetic, small
molecule, drug design, inhibitor/apoptosis complex; HET:
BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A*
3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A*
1oxn_A* 1oxq_A* 1oy7_A*
Length = 133
Score = 93.6 bits (232), Expect = 2e-25
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M RLA+F +W + E +A AGF+ D +C FCY L W+ D PW
Sbjct: 45 MGSEELRLASFYDWPL-TAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWT 103
Query: 93 EHKSHKPDCPFVQLNKRDLTTCHI 116
EH P C F+ +K +I
Sbjct: 104 EHAKWFPGCQFLLRSKGQEYINNI 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 83.5 bits (204), Expect = 8e-20
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M + R+ TF W S E +A AGFY + ++D KC C L WE D PW
Sbjct: 3 MQTHAARMRTFMYWPS-SVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 93 EHKSHKPDCPFVQLNKRDLTTCH 115
EH P C F+ K
Sbjct: 62 EHAKWFPRCEFLIRMKGQEFVDE 84
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 33.4 bits (75), Expect = 0.022
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 42 ATFTNWTFKSGNCTAEHMAHAGFYLIQD--------DCTKCVFCYKELDGWEVTDYPWDE 93
F +W + M H + QD C C Y DG +++
Sbjct: 280 GPFVDWVHAASKVPMIKMQHPEYETFQDGPHGAAGVSCADCHMQYVREDGKKISS----- 334
Query: 94 HKSHKPDCPFVQLNKRDLTTCHID---EFIVLNSAVVKNKMMETLQQGKEELTRMFDDFK 150
H P R CH D E++ + K + L + +E + + +
Sbjct: 335 ---HWMTSPMKDPEMRACRQCHADKTGEYLRQRVLYTQQKTFDQLLKAQEMSVKAHEAVR 391
Query: 151 A 151
Sbjct: 392 L 392
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 29.4 bits (66), Expect = 0.43
Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 6/104 (5%)
Query: 59 MAHAGFYLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPDCPFVQLNKRD-LTTCHID 117
+A AG + + + D E + + + +
Sbjct: 169 LADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGS 228
Query: 118 EFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKITEKINRVA 161
L E ++ G E R++ + + R
Sbjct: 229 GEGGLTE-----SWAEAVRLGLEGCQRLYPVLQQSLVRAARRRG 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.46
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 17/45 (37%)
Query: 14 KKE-KALLQALQMYNIEIASPMMFYTNRLATFTNWTFKSGNCTAE 57
K+ K L +L++Y + ++P LA T E
Sbjct: 19 KQALKKLQASLKLYADD-SAPA------LAI---------KATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.84
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 128 KNKMMETLQQGKEELTRMFDDFKAKITEKI------NRVA 161
K E ++ K++L +++ + +E++ NR+A
Sbjct: 106 KVMEQEWREKAKKDL----EEWNQRQSEQVEKNKINNRIA 141
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite
oxidase, molybdopterin, C-type cytochrome, heme,
electron transport; HET: MSS HEC; 1.8A {Starkeya
novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Length = 81
Score = 27.3 bits (60), Expect = 0.97
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 90 PWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDF 149
P + + P + + + CH ++I + E+ +M +
Sbjct: 8 PDETAQLKPAPQPGFEAAQNNCAACHSVDYINTQP------PGKGQAFWDAEVQKMIKVY 61
Query: 150 KAKITEK 156
A + E
Sbjct: 62 HAPVDEA 68
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 28.7 bits (62), Expect = 1.0
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 53 NCTAEHMAHAGFYLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPDCPFVQLNKRDLT 112
+C + H G Y + C C + +P H H P +
Sbjct: 196 SCHSNLAFHGGRYNQVETCVTCH--NSKKVSNAADIFPQMIHSKHLTGFPQSI---SNCQ 250
Query: 113 TCHID 117
TCH D
Sbjct: 251 TCHAD 255
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel,
pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma
commelinae} SCOP: c.1.12.5
Length = 339
Score = 28.2 bits (63), Expect = 1.2
Identities = 5/47 (10%), Positives = 8/47 (17%), Gaps = 13/47 (27%)
Query: 31 ASPMMFYTNRL-------------ATFTNWTFKSGNCTAEHMAHAGF 64
S M+ Y L + +A
Sbjct: 18 RSAMLTYPGNLRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKP 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.4
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 47/124 (37%)
Query: 8 NFRDYAKKEKALLQALQMYNIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI 67
N DY + E L+ L Y Y + +AE ++ LI
Sbjct: 165 NTDDYFE-E---LRDL--YQT--------YHVLVGDLIK-------FSAETLSE----LI 199
Query: 68 QDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPD----------CPFVQLNKRDLTTCHID 117
+ + L+ + + W E+ S+ PD CP + + + H
Sbjct: 200 RTTLDAEKVFTQGLN---ILE--WLENPSNTPDKDYLLSIPISCPLIGV----IQLAH-- 248
Query: 118 EFIV 121
++V
Sbjct: 249 -YVV 251
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine
nucleotide exchang factor, GTPA signaling protein; 2.08A
{Mus musculus}
Length = 288
Score = 28.1 bits (62), Expect = 1.4
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 116 IDEFI-VLNSAVVKNKMM--ETLQQGKEELTRMFDDFKAKITEKINR 159
EFI AV KN+ + ++ ++EL + ++ + + I R
Sbjct: 239 FKEFIMRCGEAVEKNRRLITAEQREYQQELKKNYNKLRDSLRPMIER 285
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1;
2.40A {Mus musculus} PDB: 2e32_A
Length = 297
Score = 27.2 bits (59), Expect = 2.7
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 29 EIASPMMFYTNRLATFTNWTFKSGNCTAEHMAH------AGFYLIQDDCTKCVFCYKEL- 81
E+ + + S + +H L+++ C +
Sbjct: 84 ELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDV 143
Query: 82 ----DGWEVTDYPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQ 136
DGW+V + P D D + C + I L + ++++T Q
Sbjct: 144 EHGGDGWKVEELPGDNGVEFTQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQ 202
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 26.3 bits (59), Expect = 3.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 7 INFRDYAKK---EKALLQALQMYNIEI 30
+D+A K E A+L AL + +I
Sbjct: 63 FKRKDFASKEAHEDAILAALDVLKPDI 89
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 26.3 bits (59), Expect = 4.0
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 7 INFRDYAKK---EKALLQALQMYNIEI 30
I +++ K E+ + L+ +E+
Sbjct: 57 IQRKEFPSKKEFEERMALELKKKGVEL 83
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II
aldolase, homoprotocatechuate, aromatic DEGR aromatic
hydrocarbons catabolism; 1.60A {Escherichia coli} PDB:
2v5k_A
Length = 287
Score = 26.5 bits (59), Expect = 4.5
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 8/51 (15%)
Query: 22 ALQMYNIEIASPMMFYTNRL--------ATFTNWTFKSGNCTAEHMAHAGF 64
+ + E N W S + +AE +A AGF
Sbjct: 11 DVDIPTTENLYFQGAMENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGF 61
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 26.3 bits (59), Expect = 4.5
Identities = 3/27 (11%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 7 INFRDYAKK---EKALLQALQMYNIEI 30
+ + + ++ L+ + MY ++
Sbjct: 56 LIASAFDSREAYDRELIHEIDMYAPDV 82
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
3lw5_B*
Length = 740
Score = 26.3 bits (57), Expect = 5.5
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 37 YTNRLATFTNWTFKSGNCTAEHMAHAGFYLIQD 69
+T A +T+ + +G AH +L++D
Sbjct: 368 HTTMAALYTHHQYIAGFLMVGAFAHGAIFLVRD 400
>1meo_A Phosophoribosylglycinamide formyltransferase; purine
biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB:
1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A*
1zly_A* 1zlx_A* 1mej_B 1men_A*
Length = 209
Score = 25.9 bits (58), Expect = 5.7
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 7 INFRDYAKK---EKALLQALQMYNIEI 30
IN + Y + + A+ L+ ++I+I
Sbjct: 56 INHKLYKNRVEFDSAIDLVLEEFSIDI 82
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines,
pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A
{Coxiella burnetii}
Length = 215
Score = 25.9 bits (58), Expect = 5.7
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 7 INFRDYAKK---EKALLQALQMYNIEI 30
I ++ + E L + + Y+ ++
Sbjct: 60 IPHEEFPSRTDFESTLQKTIDHYDPKL 86
>2j7a_A Cytochrome C nitrite reductase NRFA; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_A*
Length = 500
Score = 26.1 bits (56), Expect = 5.8
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 15/139 (10%)
Query: 21 QALQMYNIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGF-----YLIQDDCTKCV 75
+ Y+ + + + A +T+ K+ A+H + + C C
Sbjct: 237 DMYRYYDKHGDLQVKGFEGKFADWTHPASKTPMIKAQHPEYETWINGTHGAAGVTCADCH 296
Query: 76 FCYKELDGWEVTDYPWDEHKSHKPDCPFVQLNKRDLTTCHID---EFIVLNSAVVKNKMM 132
Y D + SH P R CH D +++ + +
Sbjct: 297 MSYTRSDDK-------KKISSHWWTSPMKDPEMRACRQCHSDKTPDYLKSRVLFTQKRTF 349
Query: 133 ETLQQGKEELTRMFDDFKA 151
+ L +E + + +
Sbjct: 350 DLLLAAQEVSVKAHEAVRL 368
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 26.2 bits (58), Expect = 6.3
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 21/63 (33%)
Query: 49 FKSGNCTA-------EHM--AHAGFYLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKP 99
+ T+ + H G D + + +G D HKP
Sbjct: 134 DYAS-STSVTAVLAKGFVAVGHLG------DS-RIAMGVETPNGLNCEFLTVD----HKP 181
Query: 100 DCP 102
D P
Sbjct: 182 DMP 184
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics,
TRMD, tRNA (M1G37) methyltransferase, B structure
funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Length = 257
Score = 26.0 bits (58), Expect = 6.7
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 2 VQLNTINFRDYAK 14
V++ I+ R++A
Sbjct: 36 VEVYPIDLREFAP 48
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics,
PSI-biology, protein STRU initiative; 1.90A {Bacillus
halodurans}
Length = 211
Score = 25.6 bits (57), Expect = 7.6
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 6 TINFRDYAKK---EKALLQALQMYNIEI 30
++ + Y K E ++Q L+ I+
Sbjct: 57 ALDPKTYPSKEAYEIEVVQQLKEKQIDF 84
>2ljx_A Protein E6; metal binding protein; NMR {Human papillomavirus}
PDB: 2ljy_A
Length = 84
Score = 24.4 bits (53), Expect = 9.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 74 CVFCYKELDGWEVTDY 89
CV+C ++L EV D+
Sbjct: 32 CVYCKQQLLRREVYDF 47
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK
guanine nucleotide exchange factors; 2.70A {Homo
sapiens} PDB: 3b13_A
Length = 436
Score = 25.4 bits (55), Expect = 10.0
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 73 KCVFCYKE--LDGWEVTDYPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNK 130
Y++ V D+P D+ K L + L + + ++
Sbjct: 355 GGFAKYEKAFFTEEYVRDHPEDQDKLTH------------LKDLIAWQIPFLGAGIKIHE 402
Query: 131 MM--ETLQQGKEELTRMFDDFKAKITEK 156
+ L+ + + F + K K+ ++
Sbjct: 403 KRVSDNLRPFHDRMEECFKNLKMKVEKE 430
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.423
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,483,410
Number of extensions: 135188
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 49
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)