RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2280
(162 letters)
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 98.5 bits (245), Expect = 1e-27
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 34 MMFYTNRLATFTNWTFKSGN-CTAEHMAHAGFYLI----QDDCTKCVFCYKELDGWEVTD 88
+R++TF NW F G CT E MA AGF + D +C FC+KEL+GWE D
Sbjct: 8 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67
Query: 89 YPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMMETLQQGKEELTRM 145
P +EHK H C F+ + K+ + EF+ L+ KNK+ + K+E
Sbjct: 68 DPIEEHKKHSSGCAFLSVKKQF-EELTLGEFLKLDRERAKNKIAKETNNKKKEFEET 123
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
livin) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 93.7 bits (233), Expect = 2e-26
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M RLA+F +W + E +A AGF+ D +C FCY L W+ D PW
Sbjct: 7 MGSEELRLASFYDWPL-TAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWT 65
Query: 93 EHKSHKPDCPFVQLNK 108
EH P C F+ +K
Sbjct: 66 EHAKWFPGCQFLLRSK 81
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 93.4 bits (232), Expect = 4e-26
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
T RL TF W +A AGF+ D +C C L W D PW+
Sbjct: 10 YAIETARLRTFEAWPRNL-KQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWE 68
Query: 93 EHKSHKPDCPFVQLNK 108
+H C FV+L K
Sbjct: 69 QHALWLSQCRFVKLMK 84
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 91.8 bits (228), Expect = 1e-25
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M Y R+ TF W + E +A AGFY + + D KC C L W+ ++ PW+
Sbjct: 13 MADYEARIFTFGTWIYS---VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWE 69
Query: 93 EHKSHKPDCPFVQLNK 108
+H P C ++ K
Sbjct: 70 QHAKWYPGCKYLLEQK 85
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 97
Score = 89.9 bits (223), Expect = 8e-25
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
+ RL TFT+W +A G Y D KC FC E+ WE D P
Sbjct: 3 LNREETRLKTFTDWPLD--WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 60
Query: 93 EHKSHKPDCPFVQLNK 108
EH+ P+CP ++
Sbjct: 61 EHQRWSPNCPLLRRRT 76
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 88.0 bits (218), Expect = 3e-24
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M + R+ TF W E +A AGFY + ++D KC C L WE D PW
Sbjct: 1 MQTHAARMRTFMYWPSSV-PVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 59
Query: 93 EHKSHKPDCPFVQLNK 108
EH P C F+ K
Sbjct: 60 EHAKWFPRCEFLIRMK 75
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 88.0 bits (218), Expect = 6e-24
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 34 MMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLI-QDDCTKCVFCYKELDGWEVTDYPWD 92
M RL +F NW + + T +A AG Y D +C C +L WE D W
Sbjct: 34 MYSEEARLKSFQNWPDYA-HLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWS 92
Query: 93 EHKSHKPDCPFV 104
EH+ H P+C FV
Sbjct: 93 EHRRHFPNCFFV 104
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 28.9 bits (64), Expect = 0.29
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 44 FTNWTFKSGNCTAEHMAHAGFYLIQD--------DCTKCVFCYKELDGWEVTDYPWDEHK 95
F +W + M H + QD C C Y DG +++
Sbjct: 245 FVDWVHAASKVPMIKMQHPEYETFQDGPHGAAGVSCADCHMQYVREDGKKISS------- 297
Query: 96 SHKPDCPFVQLNKRDLTTCHID---EFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKA 151
H P R CH D E++ + K + L + +E + + +
Sbjct: 298 -HWMTSPMKDPEMRACRQCHADKTGEYLRQRVLYTQQKTFDQLLKAQEMSVKAHEAVRL 355
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 26.8 bits (59), Expect = 0.33
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 61 HAGFYLIQDDCTKCVFCYKELD 82
HAGF+L +++C C C K L+
Sbjct: 25 HAGFFLRENECVSCSNCKKSLE 46
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 27.5 bits (60), Expect = 0.73
Identities = 11/107 (10%), Positives = 21/107 (19%), Gaps = 4/107 (3%)
Query: 54 CTAEHMAHAGFYLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPDCPFVQLNKRDLTT 113
++ D + + P
Sbjct: 250 VCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQ 309
Query: 114 CHIDEFIVLNSAVVKNKMMETLQQGKEELTRMFDDFKAKITEKINRV 160
+ + + V+ + E EL RM A + N V
Sbjct: 310 FTLLNLVAEGTGVITETIFENRFMHVPELIRM----GAHAEIESNTV 352
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 161
Score = 25.4 bits (55), Expect = 3.1
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 30 IASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFYLIQDDCTKCVFCYKEL--DGWEVT 87
+ + +++ T + + GN A YL + K + Y E +G +
Sbjct: 32 LGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFM 91
Query: 88 DYPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSAVVKNKMME 133
+ K ++ + S + +
Sbjct: 92 EVAKRVTKKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFK 137
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 24.3 bits (52), Expect = 3.2
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 65 YLIQDDCTKCVFCYKEL--DGWEVTDYPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVL 122
+I D+C C C E D + S +C + + C +D I+
Sbjct: 2 LMITDECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDC-IIK 60
Query: 123 NSAVVKNKMMETLQQGKEELT 143
+ + + + + L+ E +T
Sbjct: 61 DPSHEETE--DELRAKYERIT 79
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 24.4 bits (52), Expect = 3.9
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 65 YLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPDC 101
I DDCT C C +E E + C
Sbjct: 2 LYINDDCTACDACVEECP-NEAITPGDPIYVIDPTKC 37
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 24.4 bits (52), Expect = 4.5
Identities = 10/67 (14%), Positives = 17/67 (25%)
Query: 48 TFKSGNCTAEHMAHAGFYLIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPDCPFVQLN 107
+ G C G +C C+ E E T C +
Sbjct: 25 YSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDG 84
Query: 108 KRDLTTC 114
+++C
Sbjct: 85 PHCVSSC 91
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
1085]}
Length = 320
Score = 25.2 bits (55), Expect = 4.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 7 INFRDYAKKEKALLQALQMYNIEIA 31
+ DYA++ K L +A + + +
Sbjct: 284 VPVLDYAREHKELARAFESFPGDAD 308
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
{Aquifex aeolicus [TaxId: 63363]}
Length = 232
Score = 24.5 bits (53), Expect = 7.0
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 2 VQLNTINFRDYAKKEK 17
V++ I+ R++A K +
Sbjct: 33 VEVYPIDLREFAPKGQ 48
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 307
Score = 24.0 bits (52), Expect = 9.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 7 INFRDYAKKEKALLQALQ 24
I +YAK K L +AL+
Sbjct: 283 IPLDEYAKTHKELARALE 300
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 24.3 bits (51), Expect = 9.5
Identities = 14/151 (9%), Positives = 33/151 (21%), Gaps = 4/151 (2%)
Query: 6 TINFRDYAKKEKALLQALQMYNIEIASPMMFYTNRLATFTNWTFKSGNCTAEHMAHAGFY 65
+ R+ + + ++ F T +
Sbjct: 29 AVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRK 88
Query: 66 LIQDDCTKCVFCYKELDGWEVTDYPWDEHKSHKPDCPFVQLNKRDLTTCHIDEFIVLNSA 125
+ +G++ V NK D I + V
Sbjct: 89 RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDR----IHGWRVHEGR 144
Query: 126 VVKNKMMETLQQGKEELTRMFDDFKAKITEK 156
+ Q +++L + K+ E+
Sbjct: 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEE 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.423
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 630,382
Number of extensions: 28913
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 41
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)