BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2281
(287 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193659798|ref|XP_001951302.1| PREDICTED: replication factor C subunit 3-like [Acyrthosiphon
pisum]
Length = 355
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 180/355 (50%), Positives = 230/355 (64%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFY------------------- 41
MSLW DKYRPN+LQK+D+H QA HL NL+ +GDFPHLLFY
Sbjct: 1 MSLWADKYRPNSLQKVDYHQDQAQHLTNLVNQGDFPHLLFYGPNGAGKKTRILALLRQLY 60
Query: 42 GP-----------------------------------SGAGKKTRIMAL----------- 55
GP S AG RI+ +
Sbjct: 61 GPGVERLRTEHMNFMTPSNKKFEIMTVASNYHIEVNASDAGMYDRIVVMELIKTVAQTHQ 120
Query: 56 ---LKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
K+ + VI+L E D LT+EAQQALRRTMEKY+ TCR+ILCANS+ QVIPAIRSRCL
Sbjct: 121 LDSTKQRHFKVILLTEVDRLTKEAQQALRRTMEKYMATCRIILCANSIGQVIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAPTHE+I +L ICKKEGLT+P E AL ++Q +RNLRRAILM EASKV+QYPF
Sbjct: 181 AVRVPAPTHEDICKILKTICKKEGLTLPDELALIISQNCERNLRRAILMLEASKVKQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ Q +V PDW++YI DTAK I+S+Q+P KLLEVR+ LYEL+VH IP NV+FK+LL+ L+
Sbjct: 241 DVKQSVVVPDWQLYIGDTAKQILSQQTPGKLLEVRSMLYELIVHGIPTNVIFKFLLKELV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK +E+A+ +EH + KG+K +FH+EA+VA FM +Y +FME++L +F
Sbjct: 301 KNCDISLKHDIVEIASFYEHSLLKGNKTMFHLEAFVAKFMLLYSKFMEESLHGIF 355
>gi|149635763|ref|XP_001509935.1| PREDICTED: replication factor C subunit 3-like [Ornithorhynchus
anatinus]
Length = 356
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 224/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QAN LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPGSLARLDYHKEQANQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GTGVEKLRIEHQAITTPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL++PP A RLA++++RNLR+A+LMCEA KVQQYPF
Sbjct: 181 AVRVPAPSVEDICHVLSTVCKKEGLSLPPALARRLAEKANRNLRKALLMCEACKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 NNCDGQLKGEVTQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEAMM 355
>gi|431903108|gb|ELK09284.1| Replication factor C subunit 3 [Pteropus alecto]
Length = 356
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 225/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+++CKKEGLT+PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSSVCKKEGLTLPPQLAYRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ++ E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEVPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|57526873|ref|NP_001009629.1| replication factor C subunit 3 [Rattus norvegicus]
gi|56789712|gb|AAH88281.1| Replication factor C (activator 1) 3 [Rattus norvegicus]
gi|149015521|gb|EDL74921.1| replication factor C (activator 1) 3 [Rattus norvegicus]
Length = 356
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 173/354 (48%), Positives = 224/354 (63%), Gaps = 68/354 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+PAP+ E+I SVL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP V+ K LL LL
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
>gi|291408671|ref|XP_002720641.1| PREDICTED: replication factor C 3 [Oryctolagus cuniculus]
Length = 356
Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ EEI VLT +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEEICHVLTTVCKKEGLNLPSQLAHRLAEKSRRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|444707055|gb|ELW48364.1| Replication factor C subunit 3 [Tupaia chinensis]
Length = 356
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 224/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQSITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
IDQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TIDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|296203698|ref|XP_002749009.1| PREDICTED: replication factor C subunit 3 [Callithrix jacchus]
Length = 356
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 224/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLLELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|84370117|ref|NP_001033636.1| replication factor C subunit 3 [Bos taurus]
gi|426236447|ref|XP_004012180.1| PREDICTED: replication factor C subunit 3 [Ovis aries]
gi|108860923|sp|Q2TBV1.1|RFC3_BOVIN RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|83638731|gb|AAI09607.1| Replication factor C (activator 1) 3, 38kDa [Bos taurus]
gi|296481817|tpg|DAA23932.1| TPA: replication factor C subunit 3 [Bos taurus]
gi|440909972|gb|ELR59817.1| Replication factor C subunit 3 [Bos grunniens mutus]
Length = 356
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMI 355
>gi|403286412|ref|XP_003934486.1| PREDICTED: replication factor C subunit 3-like [Saimiri boliviensis
boliviensis]
Length = 356
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+SEQ+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLLELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|156230598|gb|AAI52282.1| Replication factor C (activator 1) 3 [Danio rerio]
Length = 356
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L KLD+H +QAN L+NL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G PS AG R++ L+K +
Sbjct: 61 GAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI IRSRCL
Sbjct: 121 IQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+P P+ EE+ SVL+ +C+KEGL +PPE A ++A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+S+QSP++LLEVR RLYELL H IP V+ K L+ LL
Sbjct: 241 SPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPEVIMKGLVTELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+NCD LK++ +MAA +EHR+ G+K I+H+EA+VA FMA+Y +FMED L N
Sbjct: 301 SNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFMEDGLDNFM 355
>gi|395855456|ref|XP_003800177.1| PREDICTED: replication factor C subunit 3 [Otolemur garnettii]
Length = 356
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHETITTPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGLT+P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLTLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|318904079|ref|NP_001187655.1| replication factor C subunit 3 [Ictalurus punctatus]
gi|308323615|gb|ADO28943.1| replication factor c subunit 3 [Ictalurus punctatus]
Length = 356
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 221/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L KLD+H +QANHL++L++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTSLAKLDYHKEQANHLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G PS AG R++ L+K +
Sbjct: 61 GAGVEKLRIEHQSIVAPSKKKIEINAIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ LRRTMEKY+ TCRLILC NS S+VI IRSRCL
Sbjct: 121 IQSSTQREFKVVLLTEVDRLTKDAQHVLRRTMEKYMGTCRLILCCNSTSKVISPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+P P+ EE+ SV+ ++CKKEGL +PPE A R+A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPLPSTEEVCSVMMSVCKKEGLILPPELAKRIAEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+++QSP++LLEVR RLYELL H IP ++ K L+ LL
Sbjct: 241 SADQDIPETDWEVYLRETANAIVNQQSPQRLLEVRARLYELLTHCIPAEIIMKGLVCELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+NCD LK + +MAA +EHR+ GSK I+H+EA+VA FM +Y QFMED L N
Sbjct: 301 SNCDGHLKPEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMTIYKQFMEDGLDNFM 355
>gi|124249204|ref|NP_081285.1| replication factor C subunit 3 [Mus musculus]
gi|30913256|sp|Q8R323.1|RFC3_MOUSE RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|20071210|gb|AAH26795.1| Rfc3 protein [Mus musculus]
gi|74188877|dbj|BAE39214.1| unnamed protein product [Mus musculus]
gi|74203125|dbj|BAE26250.1| unnamed protein product [Mus musculus]
gi|148673950|gb|EDL05897.1| mCG17786, isoform CRA_a [Mus musculus]
Length = 356
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I SVL+ +C+KEGL +P A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|345790237|ref|XP_534500.3| PREDICTED: replication factor C subunit 3 [Canis lupus familiaris]
Length = 356
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+SEQ+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|149730139|ref|XP_001494707.1| PREDICTED: replication factor C subunit 3 [Equus caballus]
Length = 356
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VLT +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLTTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|298104116|ref|NP_001177121.1| replication factor C subunit 3 [Sus scrofa]
Length = 356
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 224/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL++P + A +LA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMI 355
>gi|114649328|ref|XP_509625.2| PREDICTED: replication factor C subunit 3 isoform 4 [Pan
troglodytes]
gi|397513233|ref|XP_003826924.1| PREDICTED: replication factor C subunit 3-like [Pan paniscus]
gi|410218892|gb|JAA06665.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410266462|gb|JAA21197.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410287194|gb|JAA22197.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
gi|410331917|gb|JAA34905.1| replication factor C (activator 1) 3, 38kDa [Pan troglodytes]
Length = 356
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A R+A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRIAEKSRRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP V+ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|388453027|ref|NP_001253730.1| replication factor C subunit 3 [Macaca mulatta]
gi|402901747|ref|XP_003913802.1| PREDICTED: replication factor C subunit 3-like [Papio anubis]
gi|67970669|dbj|BAE01677.1| unnamed protein product [Macaca fascicularis]
gi|355700922|gb|EHH28943.1| Activator 1 subunit 3 [Macaca mulatta]
gi|355754623|gb|EHH58524.1| Activator 1 subunit 3 [Macaca fascicularis]
gi|380815322|gb|AFE79535.1| replication factor C subunit 3 isoform 1 [Macaca mulatta]
gi|383414017|gb|AFH30222.1| replication factor C subunit 3 isoform 1 [Macaca mulatta]
Length = 356
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQATQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|432895956|ref|XP_004076244.1| PREDICTED: replication factor C subunit 3-like [Oryzias latipes]
Length = 356
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 225/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L KLD+H +QA L+NL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTSLGKLDYHKEQATQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G PS AG + R++ L+K +
Sbjct: 61 GAGVEKLRIEHHTIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+IL E D LT++AQ ALRRTMEKY++TCRLILC+ S S+VI IRSRCL
Sbjct: 121 IQSSTQREFKVVILTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+P P+ EE+ SVLT++CKKEGL +PPE A +++++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPLPSTEEVCSVLTSVCKKEGLNLPPELAKQISEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ++ E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K L++ LL
Sbjct: 241 SADQEVPETDWEVYLRETANAIVSQQNPQRLLEVRARLYELLTHCIPPEIIMKGLVKELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+NCD LK++ MAA +EHR+ GSK I+H+EA+ A FMA+Y +FMED L +
Sbjct: 301 SNCDGQLKAEVAHMAAYYEHRLQLGSKAIYHLEAFTAKFMAIYKKFMEDGLDAMM 355
>gi|301765690|ref|XP_002918266.1| PREDICTED: replication factor C subunit 3-like [Ailuropoda
melanoleuca]
gi|281349170|gb|EFB24754.1| hypothetical protein PANDA_006686 [Ailuropoda melanoleuca]
Length = 356
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|297693825|ref|XP_002824203.1| PREDICTED: replication factor C subunit 3 isoform 1 [Pongo abelii]
Length = 356
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVVQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|148226246|ref|NP_001089570.1| replication factor C (activator 1) 3, 38kDa [Xenopus laevis]
gi|67514211|gb|AAH98179.1| MGC115007 protein [Xenopus laevis]
Length = 356
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L KLD+H QA+ LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLSKLDYHKDQASQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VI IRSRCL
Sbjct: 121 LETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ +EI +VL ++CKKEGL +P + A R+A++S RNLR+A+L+CEAS+VQQYPF
Sbjct: 181 AVRVPAPSTDEICTVLFSVCKKEGLVLPQDLARRIAEKSGRNLRKALLICEASRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + E DW++Y+++TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 SADQDLPETDWEVYVKETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIIKCLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK+ +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 NNCDGQLKADVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEAMM 355
>gi|54696202|gb|AAV38473.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|60824442|gb|AAX36680.1| replication factor C 3 [synthetic construct]
gi|61364953|gb|AAX42630.1| replication factor C [synthetic construct]
gi|61367122|gb|AAX42955.1| replication factor C 3 [synthetic construct]
gi|61371558|gb|AAX43689.1| replication factor C 3 [synthetic construct]
Length = 357
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|4506489|ref|NP_002906.1| replication factor C subunit 3 isoform 1 [Homo sapiens]
gi|332242266|ref|XP_003270307.1| PREDICTED: replication factor C subunit 3 isoform 1 [Nomascus
leucogenys]
gi|426375153|ref|XP_004054410.1| PREDICTED: replication factor C subunit 3 isoform 1 [Gorilla
gorilla gorilla]
gi|3915601|sp|P40938.2|RFC3_HUMAN RecName: Full=Replication factor C subunit 3; AltName:
Full=Activator 1 38 kDa subunit; Short=A1 38 kDa
subunit; AltName: Full=Activator 1 subunit 3; AltName:
Full=Replication factor C 38 kDa subunit; Short=RF-C 38
kDa subunit; Short=RFC38
gi|18921089|gb|AAL82505.1|AF484446_1 replication factor C (activator 1) 3 (38kD) [Homo sapiens]
gi|1498259|gb|AAB07268.1| replication factor C, 38-kDa subunit [Homo sapiens]
gi|12652795|gb|AAH00149.1| Replication factor C (activator 1) 3, 38kDa [Homo sapiens]
gi|60812373|gb|AAX36209.1| replication factor C 3 [synthetic construct]
gi|119628942|gb|EAX08537.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo
sapiens]
gi|119628943|gb|EAX08538.1| replication factor C (activator 1) 3, 38kDa, isoform CRA_a [Homo
sapiens]
gi|123980104|gb|ABM81881.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|123994885|gb|ABM85044.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
gi|261860576|dbj|BAI46810.1| replication factor C (activator 1) 3, 38kDa [synthetic construct]
Length = 356
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|395520900|ref|XP_003764560.1| PREDICTED: replication factor C subunit 3 [Sarcophilus harrisii]
Length = 356
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P E A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSELAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW+IY+R+TA I+S+Q+P++LLE+R RLYELL H IP ++ K LL LL
Sbjct: 241 TSDQDIPETDWEIYLRETANAIVSQQTPQRLLEIRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FME+ L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEEGLEAMM 355
>gi|41393079|ref|NP_958865.1| replication factor C subunit 3 [Danio rerio]
gi|27503431|gb|AAH42327.1| Replication factor C (activator 1) 3 [Danio rerio]
gi|182891582|gb|AAI64808.1| Rfc3 protein [Danio rerio]
Length = 356
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L KLD+H +QAN L+NL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G PS AG R++ L+K +
Sbjct: 61 GAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI IRSRCL
Sbjct: 121 IQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+P P+ EE+ SVL+ +C+KEGL +PPE A ++A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+S+QSP++LLEVR RLYELL H I V+ K L+ LL
Sbjct: 241 SPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+NCD LK++ +MAA +EHR+ G+K I+H+EA+VA FMA+Y +FMED L N
Sbjct: 301 SNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFMEDGLGNFM 355
>gi|54696204|gb|AAV38474.1| replication factor C (activator 1) 3, 38kDa [Homo sapiens]
gi|61357169|gb|AAX41345.1| replication factor C 3 [synthetic construct]
Length = 356
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAILSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|308321967|gb|ADO28121.1| replication factor c subunit 3 [Ictalurus furcatus]
Length = 356
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L KLD+H +QAN L++L++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPMSLAKLDYHKEQANQLKSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G PS AG R++ L+K +
Sbjct: 61 GAGVEKLRIEHQSIVAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI IRSRCL
Sbjct: 121 IQSSTQREFKVVLLTEADRLTKDAQHALRRTMEKYMGTCRLILCCNSTSKVISPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+P P+ EE+ SVL ++CKKEGL +P E A R+A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPLPSTEEVCSVLMSVCKKEGLILPTELAKRIAEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA +I+++QSP++LLEVR RLYELL H IP ++ K L+ LL
Sbjct: 241 SADQDIPETDWEVYLRETANVIVNQQSPQRLLEVRARLYELLTHCIPAEIIMKGLVCELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L N
Sbjct: 301 SNCDGHLKPEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEDGLDNFM 355
>gi|417399569|gb|JAA46780.1| Putative replication factor c subunit rfc3 [Desmodus rotundus]
Length = 356
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 220/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLW DKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWADKYRPCSLSRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCVLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D L+++AQ ALRRTMEKY+ TCRLILC +S S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDRLSKDAQHALRRTMEKYMATCRLILCCSSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ EEI VL+ +CKKEGL++PP+ A RLA+QS RNLR+A+L CEA +VQQYPF
Sbjct: 181 AVRVPAPSIEEICDVLSAVCKKEGLSLPPQLARRLAEQSCRNLRKALLACEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQDVPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|170031637|ref|XP_001843691.1| replication factor C subunit 3 [Culex quinquefasciatus]
gi|167870519|gb|EDS33902.1| replication factor C subunit 3 [Culex quinquefasciatus]
Length = 358
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/347 (47%), Positives = 215/347 (61%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVD+YRP L KLD+H QA HL NL +GDFPHL+F Y
Sbjct: 1 MALWVDRYRPRELAKLDYHKTQAGHLINLCAQGDFPHLMFYGPSGAGKKTRIMCLLRELY 60
Query: 42 GP-------------SGAGKKTRIMALLKELYGPV------------------------- 63
GP + + KK IM + + V
Sbjct: 61 GPGVERLRNEIMNFTTPSNKKVEIMTVSSNYHIEVNPSDAGIYDRVVITDMIKQIAQTQQ 120
Query: 64 -----------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
I+L+E D LT++AQ ALRRTMEKY+ TCRL+LC NS S+VIPA++SRCL
Sbjct: 121 IDPSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRVIPAVKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ APT EEIV +L NICKKEGL IPPE A R+ Q+SDRNLRRAILM EA KVQQYPF
Sbjct: 181 GIRVSAPTGEEIVGILNNICKKEGLHIPPELATRITQKSDRNLRRAILMLEACKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ Q + E DW++++R+TA I+ EQSP KL VR RLYELL +P +V+F+ L+E L+
Sbjct: 241 TVGQDVPEIDWQVFLRETANQIVQEQSPAKLEAVRERLYELLSQGVPSDVIFRGLVENLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
NCD LK++++ A+++EHR+ +GSK IFH+EA+VA FMA+Y +F+
Sbjct: 301 KNCDMSLKTQTLNFASLYEHRMQQGSKHIFHLEAFVAQFMALYKKFL 347
>gi|62896703|dbj|BAD96292.1| replication factor C 3 isoform 1 variant [Homo sapiens]
Length = 356
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 221/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTTTTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEGICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|410947258|ref|XP_003980368.1| PREDICTED: replication factor C subunit 3 [Felis catus]
Length = 351
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/350 (47%), Positives = 218/350 (62%), Gaps = 63/350 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL--------------------- 39
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 40 ------------------------------FYGPSGAGKKTRIMALLKELYGP------- 62
Y +G + I +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEIXTIIFVLYSDAGNSDRVVIQEMLKTVAQSQQLETNS 120
Query: 63 -----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+P
Sbjct: 121 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 180
Query: 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
AP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF DQ+
Sbjct: 181 APSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQE 240
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD
Sbjct: 241 IPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDG 300
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 QLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 350
>gi|126327443|ref|XP_001367742.1| PREDICTED: replication factor C subunit 3 [Monodelphis domestica]
Length = 356
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 221/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSTQREFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P E A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSELAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+S+Q+P++LLE+R RLYELL H IP ++ K LL LL
Sbjct: 241 TPDQDIPETDWEVYLRETANAIVSQQTPQRLLEIRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FME+ L +
Sbjct: 301 NNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEEGLEAMM 355
>gi|61367115|gb|AAX42954.1| replication factor C 3 [synthetic construct]
Length = 357
Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLW+DKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWLDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|225706298|gb|ACO08995.1| Replication factor C subunit 3 [Osmerus mordax]
Length = 356
Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 225/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLW+DKYRP++L KLD+H +QA L+NL++ GDFPHLL Y
Sbjct: 1 MSLWLDKYRPSSLGKLDYHKEQAIQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G PS AG R++ L+K +
Sbjct: 61 GAGVEKLRIEHQTITAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTMAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VI IRSRCL
Sbjct: 121 IQTSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIGPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+P P+ EE+ VL+ +C+KEGLT+PPE A +++++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AIRVPLPSTEEVCGVLSAVCRKEGLTLPPELAQQISEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+DQ I E DW++Y+R+TA I+S+QSP++LLEVR RLYELL H IP +++ K L++ LL
Sbjct: 241 SVDQSIPETDWEVYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPDIIMKGLVKELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+NCD LK++ MAA +EHR+ GSK I+H+EA+ A FM++Y +FMED L +
Sbjct: 301 SNCDGQLKTEVAHMAAYYEHRLQLGSKAIYHLEAFTAKFMSLYKKFMEDGLDAMM 355
>gi|57529302|ref|NP_001006276.1| replication factor C subunit 3 [Gallus gallus]
gi|53133448|emb|CAG32053.1| hypothetical protein RCJMB04_16m20 [Gallus gallus]
Length = 356
Score = 326 bits (836), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP+ L +LDFH +QA LR+L++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS+S++I I+SRCL
Sbjct: 121 LETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+++CKKEGL +PPE A RLA++S RNLR+A+LMCE+ +VQQYPF
Sbjct: 181 SVRVPAPSIEDICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW+I +R+TA I+S+QSP++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 SADQDIPEMDWEICLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLTELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L ++
Sbjct: 301 NNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEDGLDDMM 355
>gi|355716184|gb|AES05530.1| replication factor C 3, 38kDa [Mustela putorius furo]
Length = 374
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 221/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H + A LRNL++ GDFPHLL Y
Sbjct: 20 MSLWVDKYRPCSLGRLDYHKELAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 79
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 80 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 139
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 140 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 199
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 200 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 259
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 260 SADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 319
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 320 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 374
>gi|354499511|ref|XP_003511852.1| PREDICTED: replication factor C subunit 3-like [Cricetulus griseus]
gi|344256817|gb|EGW12921.1| Replication factor C subunit 3 [Cricetulus griseus]
Length = 356
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 221/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLARLDYHKGQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVIIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I +VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICNVLSTVCKKEGLALPSKLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYEL H IP ++ K LL LL
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELPTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMI 355
>gi|327268843|ref|XP_003219205.1| PREDICTED: replication factor C subunit 3-like [Anolis
carolinensis]
Length = 356
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 219/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDK+RP +L KLD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKHRPTSLGKLDYHKEQAARLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQIITAPSKKKIEISTIASNYHLEVNPSDAGISDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+IL E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI IRSRCL
Sbjct: 121 LETSTQRDFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ +I SVL+N+CKKEGL +P E A R+A++S RNLR+A+LMCEA +VQQ+PF
Sbjct: 181 AVRVPAPSIGDICSVLSNVCKKEGLVLPQELAQRIAEKSGRNLRKALLMCEACRVQQHPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+SEQ+P++L EVR RLYELL H IP ++ K LL LL
Sbjct: 241 TPDQDISETDWEVYLRETANAIVSEQTPQRLFEVRGRLYELLTHCIPPEIIIKGLLCELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 NNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEAMM 355
>gi|343113487|gb|AEL87702.1| replication factor C 3 [Strongylocentrotus nudus]
Length = 334
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 163/334 (48%), Positives = 213/334 (63%), Gaps = 47/334 (14%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MS WVDK+RP +L KLD+H +QA++L+ L++ GDFPHL+ YGPSGAGKKTRIM LKELY
Sbjct: 1 MSFWVDKHRPTSLSKLDYHKEQASNLKKLVQSGDFPHLMVYGPSGAGKKTRIMCALKELY 60
Query: 61 GPV-----------------------------IILNETDHLTREA---QQALRRTM---- 84
G I +N +D + Q +R T
Sbjct: 61 GSGVEKLRIEQQTFTTPSKSKIEITTIASNYHIEVNPSDAGIYDRIVIQDLIRNTAQFQQ 120
Query: 85 -----------EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
E + TCRLILC NS S+VIPAIRSRCL +R+ AP+ EI +L N+CK
Sbjct: 121 METSAQSAGHGEVHTATCRLILCCNSTSKVIPAIRSRCLGVRVAAPSIAEITQILQNVCK 180
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL 193
KEGL +P E A R+A++S+RNLR+AIL CEA KVQQYPF DQ I E DW+ ++R+TA
Sbjct: 181 KEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYPFSADQDIPEADWEGFLRETANH 240
Query: 194 IISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHR 253
II +QSP++LLEVR R+YELL H IP +V+ K LL LL NCD LK++ AA +EHR
Sbjct: 241 IIQQQSPRQLLEVRGRMYELLTHCIPPDVILKGLLRELLKNCDGQLKTQVTHQAAFYEHR 300
Query: 254 IHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+ +GSK I+H+EAYVA FM++Y +F+E+ +
Sbjct: 301 MQQGSKAIYHLEAYVAKFMSIYKRFLEEGFEAMM 334
>gi|322794004|gb|EFZ17242.1| hypothetical protein SINV_07523 [Solenopsis invicta]
Length = 353
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 224/353 (63%), Gaps = 67/353 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L LD+H +QA L+N++++ DFPHLL Y
Sbjct: 1 MSLWVDKYRPKTLANLDYHLEQAEDLKNMVQKRDFPHLLIHGPSGAGKKTRISCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRI--MALLKELYGP-- 62
G PS AG RI M L+K
Sbjct: 61 GVAAERLKTENMQFETPSKKKLEILTNSSNYHTEVNPSDAGIYDRIVVMELIKATAQTHH 120
Query: 63 ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
V++L+ D LT++AQ ALRRTMEKYI+TCRLILCANS S+V+PAIRSRC+
Sbjct: 121 IDISQKEFKVVLLSNVDQLTKDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVR 180
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAPT EI S+L +ICK+EGLT+P E A RL + SDRNLRRAILM EA KV+QYPF
Sbjct: 181 IRVPAPTASEIKSILHSICKREGLTLPDELANRLIEASDRNLRRAILMLEACKVEQYPFT 240
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
+DQ+I +PDW+++IR+TA +++SEQSPK LL+VR R Y+LL +IP +++F+ LL+ +
Sbjct: 241 VDQKISQPDWQVFIRNTASMMVSEQSPKVLLDVRNRFYDLLTRAIPCDLIFRGLLQECIK 300
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
NCD LK + I++A+ ++HR+ +GSKPIFH+EA+ A FMA+Y +++E +L
Sbjct: 301 NCDDQLKREIIDVASEYQHRMIRGSKPIFHLEAFAARFMAIYKKYIESSLDGF 353
>gi|348541665|ref|XP_003458307.1| PREDICTED: replication factor C subunit 3-like [Oreochromis
niloticus]
Length = 356
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L K+DFH +QA L+ L++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLGKVDFHKEQAAQLKKLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYG--- 61
GP S AG + R++ L+K +
Sbjct: 61 GPGVEKLRIEHQTIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+ TCRLILC+ S S+VI IRSRCL
Sbjct: 121 IQSSTQRDFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCSTSTSKVIGPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+P P+ EE+ SVLT++CKKEGL +PPE A +++++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AIRVPLPSIEEVCSVLTSVCKKEGLVLPPELAKQISEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+DQ + E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K L++ LL
Sbjct: 241 SVDQDVPETDWEVYLRETANAIVSQQTPQRLLEVRARLYELLTHCIPPEIIMKCLVKELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK++ +AA +EHR+ GSK I+H+EA+ A FMA+Y +FMED L +
Sbjct: 301 NNCDGQLKTEVAHIAAYYEHRLQLGSKAIYHLEAFTAKFMAIYKKFMEDGLDAMM 355
>gi|351703595|gb|EHB06514.1| Replication factor C subunit 3 [Heterocephalus glaber]
Length = 356
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 221/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VI IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVISPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A R+A++S RNLR+A+LM EA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAQRIAEKSCRNLRKALLMSEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L ++
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLESMM 355
>gi|332020714|gb|EGI61119.1| Replication factor C subunit 3 [Acromyrmex echinatior]
Length = 354
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 225/354 (63%), Gaps = 67/354 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L KLD+H +QA +L+N++ + DFPHLL Y
Sbjct: 1 MSLWVDKYRPTTLAKLDYHLEQAENLKNMVNKRDFPHLLVHGPPGAGKKTRILCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRI--MALLKELYGP-- 62
G PS AG RI M L+K
Sbjct: 61 GVAAERLKIENLQFETPSKKKIEILTISSNYHTEVNPSDAGIYDRIVVMELIKATAQTHH 120
Query: 63 ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
V++L+ D LTR+AQ ALRRTMEKYI+TCRLILCANS S+V+PAI+SRC+
Sbjct: 121 IDIGQREFKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIQSRCVR 180
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAPT EI ++L +ICK+EGLT+P E A R+ + S+RNLRRAILM EA KV+QYPF
Sbjct: 181 IRVPAPTAPEIKNILHSICKREGLTLPDELANRMVEVSNRNLRRAILMLEACKVEQYPFT 240
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
+DQ++ EPDW++YIR+TA +++SEQSPK LLE+R R Y+LL SIP +++F+ LL+ +
Sbjct: 241 VDQKVTEPDWQVYIRNTASMMVSEQSPKVLLEIRNRFYDLLTRSIPCDLIFRGLLKECIK 300
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + IE+A+ ++H++ +GSKPIFH+EA+ A FM +Y +++E +L +
Sbjct: 301 NCDDQLKKEIIEVASEYQHKMIRGSKPIFHLEAFAARFMTIYKKYIESSLDSFI 354
>gi|301608991|ref|XP_002934079.1| PREDICTED: replication factor C subunit 3-like [Xenopus (Silurana)
tropicalis]
Length = 356
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 220/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L KLD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLSKLDYHKEQAVQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VI IRSRCL
Sbjct: 121 LETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+RI AP+ +EI +VL ++CKKEGL +P E A ++A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRICAPSVDEICTVLFSVCKKEGLILPQELARKIAEKSGRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + E DW++Y+++TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 SADQDLPETDWEVYVKETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIIKCLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 NNCDGQLKCDVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKRFMEDGLEAMM 355
>gi|443704239|gb|ELU01384.1| hypothetical protein CAPTEDRAFT_181059 [Capitella teleta]
Length = 358
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 218/354 (61%), Gaps = 68/354 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L KLD+H +QA HL+ L++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTALGKLDYHKEQAGHLKKLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRI--------MALLKE 58
G PS G + R+ MA +
Sbjct: 61 GIGVEKTRIEHQTFVTPSKKKLEISTVASNYHIEVNPSDVGVQDRVVIQEVVKSMAQTNQ 120
Query: 59 LYGP------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
L V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VIPAIRSRC
Sbjct: 121 LETSQQREFKVLVLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPAIRSRCF 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ ++I VL +CKKEGL +P + A ++A QS+RNLRRAILMCEA +VQQYPF
Sbjct: 181 AVRVPAPSEDQICQVLQLVCKKEGLNLPSDLAKKIATQSNRNLRRAILMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q + PDW++Y+R+TA +II +QSPK+LLEVR RLYELL H IP +V+ K LL+ L+
Sbjct: 241 SSNQDVTLPDWELYLRETANMIIQQQSPKRLLEVRGRLYELLSHCIPSDVIMKGLLQELV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+NCD ++K + ++AA +EHR+ G K I+HIEA+VA FM+++ F E + ++
Sbjct: 301 SNCDGEMKREVTQIAAYYEHRLQLGQKAIYHIEAFVAKFMSVFKHFQEGMMQDM 354
>gi|260833022|ref|XP_002611456.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae]
gi|229296827|gb|EEN67466.1| hypothetical protein BRAFLDRAFT_113525 [Branchiostoma floridae]
Length = 356
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 224/355 (63%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L KL +H +QA L+ L++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPTSLNKLSYHTEQAAQLKRLVQNGDFPHLLVFGPSGAGKKTRITCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS AG + R++ L+K +
Sbjct: 61 GAGVEKLRIEHHNFTTPSKKKIEITTIASNYHIEVCPSDAGVQDRVVVQELIKMVAQAQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY+TTCRLILC S S+VIPAIRSRCL
Sbjct: 121 LDSSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYVTTCRLILCCESTSKVIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP++++I S+L +CKKEGLT+ PE A R+A +S RNLRRAILM EA KVQQYPF
Sbjct: 181 GVRVPAPSNQQICSILQTVCKKEGLTLSPELAGRIADKSGRNLRRAILMLEACKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ DQ +VE DW++++R+TA I+S+QSP++LLEVR RLYELL H IP +V+ + LL L+
Sbjct: 241 RPDQPVVEADWEVFLRETANAIVSQQSPRRLLEVRGRLYELLTHCIPPDVIIRGLLTELI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+CD LK++ + AA +EHR+ GSK I+H+EA+VA FM++Y +F+++ ++ +
Sbjct: 301 DSCDGQLKAEVTQWAAYYEHRLQLGSKSIYHLEAFVAKFMSIYKKFLDEGMAAMM 355
>gi|344275394|ref|XP_003409497.1| PREDICTED: replication factor C subunit 3 [Loxodonta africana]
Length = 356
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 218/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRMEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LTR+AQ ALRRTMEKY++TCRLIL S S+VI IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILYCTSTSKVIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +C+KEGLT+P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCRKEGLTLPAQLARRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+S+QSP++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQDIPESDWEVYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ G K I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAFYEHRLQLGIKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>gi|225709786|gb|ACO10739.1| Replication factor C subunit 3 [Caligus rogercresseyi]
Length = 357
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 223/357 (62%), Gaps = 70/357 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L KLD+ QA++L L+K DFPHLL Y
Sbjct: 1 MSLWVDKYRPTKLSKLDYGLSQASYLETLVKGVDFPHLLVHGPSGAGKKTRVLALLRELY 60
Query: 42 GP-------------SGAGKKTRIMALL------------------------------KE 58
GP + + KK IM + ++
Sbjct: 61 GPGVERLRLEHRNFVTPSKKKLEIMTMASNYHIEVNPSDVGIYDRVVIQELIKNTASSQQ 120
Query: 59 LYGP--------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSR 110
++G V+IL E D LT++AQ ALRRTMEKY +TCRLILCANS S+VIPAIRSR
Sbjct: 121 IHGSDSGKADFKVVILTEVDKLTKDAQHALRRTMEKYTSTCRLILCANSTSKVIPAIRSR 180
Query: 111 CLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY 170
CL IR+PAP+ E+ ++ ++ KKEG +P E A R+A++S RNLRRA+L+ EA KV+QY
Sbjct: 181 CLSIRVPAPSIAEVTQIIISVAKKEGCQLPQELAKRIAERSQRNLRRALLLTEACKVKQY 240
Query: 171 PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
PF DQ IV+ DW++Y+R+TA +I+SEQ+PK+LL+VR RLYELL H IP +V+F LL+
Sbjct: 241 PFTDDQDIVDLDWEVYLRETASMIVSEQTPKRLLDVRGRLYELLSHCIPADVIFVGLLKE 300
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
L+ NCD +LK++ +AA +EHR+ G+K IFH+EA+VA FM++Y++FME+T+ F
Sbjct: 301 LVKNCDGELKTQLTALAASYEHRLQLGNKAIFHLEAFVAKFMSLYMKFMEETMGGEF 357
>gi|307203721|gb|EFN82681.1| Replication factor C subunit 3 [Harpegnathos saltator]
Length = 354
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 224/354 (63%), Gaps = 67/354 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L KLD+H +QA L+N++++ DFPHLL Y
Sbjct: 1 MSLWVDKYRPTTLAKLDYHLEQAEDLKNMVQKRDFPHLLVHGPPGAGKKTRILCILKELY 60
Query: 42 G-----------------------------------PSGAGKKTRI--MALLK------- 57
G PS AG RI M L+K
Sbjct: 61 GNAAERLKTENMQFETASKKKLEILTISSNYHIEVNPSDAGIHDRIVVMELIKATAQTHH 120
Query: 58 ----ELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
+ V++L+ D LTR+AQ ALRRTMEKYI+TCRLILCANS S+V+PAIRSRC+
Sbjct: 121 IDIGQTEFKVVLLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVR 180
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAPT EI ++L +IC++EGL++P E A R+ + SDRNLRRAILM EASKV+QYPF
Sbjct: 181 IRVPAPTASEIKNILHSICRREGLSLPDELANRIIEASDRNLRRAILMLEASKVEQYPFT 240
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
+Q+I EPDW++YIR+TA +ISEQSPK LLE+R R Y+LL +IP +++F+ LL+ +
Sbjct: 241 TNQKITEPDWQVYIRNTATKMISEQSPKVLLEIRNRFYDLLTRAIPCDLIFRGLLQECVK 300
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
CD LK + I++A+ ++HR+ +GSKPIFH+EA+ A FMA+Y ++++ +L
Sbjct: 301 KCDDQLKREIIDIASEYQHRMIRGSKPIFHLEAFAARFMAIYKKYIDSSLEGFM 354
>gi|195118724|ref|XP_002003886.1| GI18150 [Drosophila mojavensis]
gi|193914461|gb|EDW13328.1| GI18150 [Drosophila mojavensis]
Length = 356
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 160/349 (45%), Positives = 220/349 (63%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLD+H QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLKELYGP-- 62
G PS AG +T ++ L+K++
Sbjct: 61 GAGVERLRNETMNFTTPSNRKIDIMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
VI+++E D LT++AQ ALRRTMEKY+ TCR+IL NS S++IPAIRSRCL
Sbjct: 121 IDVNGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+PAP+ E+++VL N CK+EGL +PPE A R+ ++S+RN+RRA+LM EASKVQQYPF
Sbjct: 181 GIRVPAPSEAEMIAVLQNTCKREGLVLPPELAKRVVEKSERNMRRALLMLEASKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
QQI E DW++Y+R+TA I+SEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TAQQQIAELDWQVYLRETAAQIVSEQTPAKLEKIRDRLYELLSQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 NNCDMSIKAKTLEYATQYEHRMQNGAKHIFHLEAFVAQFMNIYKKFLAE 349
>gi|224043287|ref|XP_002195786.1| PREDICTED: replication factor C subunit 3 [Taeniopygia guttata]
Length = 356
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 220/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLW DK+RP L +LDFH +QA LR+L++ GDFPHLL Y
Sbjct: 1 MSLWADKHRPGALARLDFHREQAARLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 61 GAGVEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L + D LT++AQ ALRRTMEKY+ TCRLILC NS+S++I I+SRCL
Sbjct: 121 LETSTQRDFKVVLLTDVDKLTKDAQHALRRTMEKYMATCRLILCCNSVSKIIGPIQSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+PAP+ E+I VL+++CKKEGLT+P E A R+A++S RNLR+A+LMCE+ +VQQYPF
Sbjct: 181 AIRVPAPSIEDICHVLSSVCKKEGLTLPQELAQRIAEKSGRNLRKALLMCESCRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I E DW++Y+R+TA I+ +Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 SADQDIPEMDWEVYLRETANAIVGQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLTELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L ++
Sbjct: 301 NNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEDGLDDIM 355
>gi|195030434|ref|XP_001988073.1| GH10966 [Drosophila grimshawi]
gi|193904073|gb|EDW02940.1| GH10966 [Drosophila grimshawi]
Length = 356
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 219/349 (62%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLD+H QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLKELYGP-- 62
G PS AG +T ++ L+K++
Sbjct: 61 GAGVERLRNETMNFTTPSNRKIEVMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
VI+++E D LT++AQ ALRRTMEKY+ TCR+IL NS S++IPAIRSRCL
Sbjct: 121 IDINGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+PAP+ ++ +VL N CK+EGL +PPE A R+ +S+RN+RRA+LM EASKVQQYPF
Sbjct: 181 GIRVPAPSESDMAAVLQNTCKREGLVLPPELAKRVVDKSERNMRRALLMLEASKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
Q+IVE DW++Y+R+TA I+SEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TAQQEIVELDWQVYLRETATQIVSEQTPAKLEKIRDRLYELLSQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 NNCDMSIKAKTLEFATQYEHRMQNGAKHIFHLEAFVAQFMNIYKKFLAE 349
>gi|195384848|ref|XP_002051124.1| GJ14536 [Drosophila virilis]
gi|194147581|gb|EDW63279.1| GJ14536 [Drosophila virilis]
Length = 356
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 219/349 (62%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLD+H QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLKELYGP-- 62
G PS AG +T ++ L+K++
Sbjct: 61 GAGVERLRNETMSFTTPSNRKIEVMTVGSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
VI+++E D LT++AQ ALRRTMEKY+ TCR+IL NS S++IPAIRSRCL
Sbjct: 121 IDINGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+PAP+ E+ +VL + CK+EGL +PPE A R+ ++S+RN+RRA+LM EASKVQQYPF
Sbjct: 181 GIRVPAPSENEMTAVLQSTCKREGLVLPPELAKRVVEKSERNMRRALLMLEASKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
QQI E DW++Y+R+TA I+SEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TAQQQIAELDWQVYLRETATQIVSEQTPAKLEKIRDRLYELLSQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 NNCDMSIKAKTLEYATQYEHRMQNGAKHIFHLEAFVAQFMNIYKKFLAE 349
>gi|290561887|gb|ADD38341.1| Replication factor C subunit 3 [Lepeophtheirus salmonis]
Length = 353
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 226/356 (63%), Gaps = 72/356 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRPN KLDF KQA +L L+K DFPHLL Y
Sbjct: 1 MSLWVDKYRPN---KLDFGLKQAAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELY 57
Query: 42 GP-------------SGAGKKTRIM------------------------------ALLKE 58
GP + + KK IM A ++
Sbjct: 58 GPGVERLRIEHQNFETPSKKKLEIMTIASNYHIELNPSDVGIYDRVVIQELIKNTASAQQ 117
Query: 59 LYG-------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
++G V++LNE D LT++AQ ALRRTMEKY +TCRLILC+NS S++IPAI+SRC
Sbjct: 118 IHGDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRC 177
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
L IRIPAP+ ++I+ +L + KKEG +P E A R+ ++S+RNLRRA+L+ EA KV+QYP
Sbjct: 178 LSIRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKVKQYP 237
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
F Q IV+ DW++Y++DTA++I+SEQ+PKKLLEVR RLYELL H IP + +F LL+ L
Sbjct: 238 FVDGQDIVDLDWEVYLKDTARMIVSEQTPKKLLEVRGRLYELLGHCIPPDEIFVGLLKEL 297
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+ NCD +LK++ +AA +EHR+++G+K IFH+EA+VA FM++Y++FME+T+ F
Sbjct: 298 VKNCDGELKTQLTSLAASYEHRLNQGNKSIFHLEAFVAKFMSLYMKFMEETMGCGF 353
>gi|307188807|gb|EFN73390.1| Replication factor C subunit 3 [Camponotus floridanus]
Length = 354
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 221/354 (62%), Gaps = 67/354 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L KLD+H +QA L+N++++ DFPHLL Y
Sbjct: 1 MSLWVDKYRPTTLAKLDYHLEQAEDLKNMVQKRDFPHLLVHGPPGAGKKTRILCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRI--MALLKELYGP-- 62
G PS AG RI M L+K
Sbjct: 61 GSAAERLKVENMQFETASKKKLEILTISSNYHTEVNPSDAGIHDRIVVMELIKATAQTHH 120
Query: 63 ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
VI+L+ D LTR+AQ ALRRTMEKYI+TCRLILCANS S+V+PAIRSRC+
Sbjct: 121 IDVGQKEFKVILLSNVDQLTRDAQHALRRTMEKYISTCRLILCANSTSRVLPAIRSRCVR 180
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAPT EI ++L +ICK+EGL +P EFA R+ + S RNLRRAILM EA KV+Q PF
Sbjct: 181 IRVPAPTGSEIKNILHSICKREGLHLPDEFANRVIEASGRNLRRAILMLEACKVEQCPFT 240
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
DQ+I EPD+++YIR+TA +++SEQSPK LLEVR R Y+LL +IP +++F+ LL+ +
Sbjct: 241 ADQKITEPDYQVYIRNTANMMVSEQSPKVLLEVRNRFYDLLTRAIPCDLIFRGLLKECIK 300
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + I +A+ ++HR+ +GSKPIFH+EA+ A +MA+Y +++E +L
Sbjct: 301 NCDDQLKREIIGIASEYQHRMIRGSKPIFHLEAFAACYMAIYKKYIESSLEGFM 354
>gi|194761254|ref|XP_001962844.1| GF14225 [Drosophila ananassae]
gi|190616541|gb|EDV32065.1| GF14225 [Drosophila ananassae]
Length = 356
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/349 (45%), Positives = 220/349 (63%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLD+H QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGSGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRSETMTFTTPSNRKIEVMTVSSNYHLEVNPSDAGIYDRTVVVDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ EIVS+L N CK+EGLT+PPE A RL ++S+RNLRRA+LM EA+KV + PF
Sbjct: 181 GIRVSAPSEPEIVSILQNTCKREGLTLPPELAKRLVEKSERNLRRALLMLEAAKVAKVPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW+ ++RDTA IISEQ+P KL ++R RLYELL+ +P N++F+ L+E L+
Sbjct: 241 TANQEIPDLDWQAFLRDTASQIISEQTPAKLEKIRERLYELLIQGVPSNLIFRGLVENLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 NNCDMSIKAKTLEFATEYEHRMQAGAKHIFHLEAFVAQFMNIYKKFLSE 349
>gi|427795473|gb|JAA63188.1| Putative replication factor c subunit rfc3, partial [Rhipicephalus
pulchellus]
Length = 357
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/355 (45%), Positives = 218/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDK+RP NL KLD+H +QA +L+ L+ GDFPHLL Y
Sbjct: 3 MSLWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELY 62
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLK +
Sbjct: 63 GAGVERLRIEHQNFVTPSKKKIEIVTVASNYHIEVNPSEAGIHDRVVIQELLKTVAQTQQ 122
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+IL E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VIPAIRSRCL
Sbjct: 123 LESNAQREFKVVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSCSKVIPAIRSRCL 182
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ +E+++VL + +KEG+T+P A +A QS RNLRRA+LM EA + QQYPF
Sbjct: 183 AIRVAAPSVDEVITVLNLVARKEGITLPDTLAQAIAAQSHRNLRRAVLMLEACRAQQYPF 242
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q++ +PDW++Y+ +TAK+I+ EQS K+L EVR RLYELL H IP +V+ K LL+ ++
Sbjct: 243 SDNQKVRQPDWELYLEETAKMIVQEQSVKRLSEVRARLYELLTHLIPPDVILKGLLKQVV 302
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
ANCD LK ++ +AA +EHR+ GSK I+H+EA+VA MA+Y F+++++S F
Sbjct: 303 ANCDGQLKGEATALAAQYEHRLQLGSKAIYHLEAFVAKVMAIYKNFLDESISGFF 357
>gi|194861801|ref|XP_001969859.1| GG10322 [Drosophila erecta]
gi|190661726|gb|EDV58918.1| GG10322 [Drosophila erecta]
Length = 356
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 219/349 (62%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP L KLDFH +QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MSLWVDKYRPRELSKLDFHKEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP EIVS+L N CK+EGL +P E A RL +S+RNLRRA+LM EA+KV + PF
Sbjct: 181 GIRVAAPNETEIVSILQNTCKREGLALPVELAKRLVDKSERNLRRALLMLEAAKVAKAPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW++++R+TA IISEQ+P KL ++R RLYELL+ +P N++F+ L+E L+
Sbjct: 241 TANQEIPDLDWQVFLRETASQIISEQTPVKLEKIRERLYELLIQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
+NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 SNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSE 349
>gi|158299762|ref|XP_319799.4| AGAP009047-PA [Anopheles gambiae str. PEST]
gi|157013673|gb|EAA14768.4| AGAP009047-PA [Anopheles gambiae str. PEST]
Length = 358
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/347 (44%), Positives = 215/347 (61%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVD+YRP L KLD+H QA+ L NL +GDFPHL+F Y
Sbjct: 1 MSLWVDRYRPRELAKLDYHKPQASQLINLCSQGDFPHLMFYGPSGAGKKTRIICLLRELY 60
Query: 42 GP-------------SGAGKKTRIMALLKELYGPV------------------------- 63
GP + + KK IM + + V
Sbjct: 61 GPGVERLRNEVMNFTTPSNKKIEIMTVSSNYHIEVNPSDVGIYDRVVITDMIKQIAQTQQ 120
Query: 64 -----------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
I+L+E D LT++AQ ALRRTMEKY+ TCRLILC NS S++IPA++SRCL
Sbjct: 121 IDPSGQREFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLILCVNSTSRIIPAVKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ APT +EIVS++ +ICKKE L IPPE A R+AQ+S+RNLRRAIL EA KV QYPF
Sbjct: 181 GIRVSAPTEDEIVSIMNSICKKENLHIPPELATRIAQKSERNLRRAILTLEACKVMQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW+ Y+++TA +I+ EQ+P+++ VR RLYELL IP +++FK L++ L+
Sbjct: 241 TANQEIPDMDWQTYLKETANMIVQEQTPQRMEVVRERLYELLSQGIPPDIIFKGLVQILV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
NCD LK++++ A +++HR+ +GSK IFH+EA+VA FMA+Y +F+
Sbjct: 301 KNCDMSLKTQTLSFAGLYDHRMQRGSKHIFHLEAFVAQFMALYKKFL 347
>gi|242011379|ref|XP_002426428.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212510533|gb|EEB13690.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 355
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 220/355 (61%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLW +KYRP+NL KLD+H QA L+NL+ +GDFPHLL Y
Sbjct: 1 MSLWCEKYRPSNLSKLDYHLDQAKQLKNLINKGDFPHLLVYGTPGSGKKTRIMCLLKELY 60
Query: 42 GPSG-------------AGKKTRIMALLKE-----------LYGPVII------------ 65
GP + KK IM L +Y V+I
Sbjct: 61 GPGAWKLKTCQMNFTTPSNKKIDIMTLSSNYHIEVNPSDVGIYDRVVITELVKKTASTYQ 120
Query: 66 -------------LNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
L D LT +AQ ALR+TME Y TCRLILC NS+S +IPAI+SRCL
Sbjct: 121 LNSSKQKSFKILLLQGIDELTADAQHALRKTMENYNVTCRLILCGNSISNIIPAIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IRIPAP++E+I +L ICKKEG+ +P A +A++SDRNLRRAILMCEA +VQQ+P
Sbjct: 181 HIRIPAPSYEDICKILLFICKKEGIQLPETLAYNIARKSDRNLRRAILMCEACRVQQFPL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q++V+ DW+I++++TA+LI+++Q+P+ L E R R+YEL+VH IP +V+FK LL L+
Sbjct: 241 TENQEVVDLDWQIFLKETARLIVAKQTPEALYEARGRIYELIVHKIPPSVIFKGLLVELV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD ++K + E AA +EH +HKGSK IFHIEA++A FM +Y +++++++S+LF
Sbjct: 301 KNCDMNIKMEIAEAAAHYEHLMHKGSKVIFHIEAFIAKFMLIYSKYLQNSMSDLF 355
>gi|357625732|gb|EHJ76077.1| putative Replication factor C subunit 3 [Danaus plexippus]
Length = 355
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 182/225 (80%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+ILNE D LT++AQ ALRRTMEKY++TCRLIL ANS+S+VI AIRSRCL IR+PAPT
Sbjct: 131 VVILNEVDDLTKDAQHALRRTMEKYVSTCRLILIANSISRVITAIRSRCLTIRVPAPTET 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI SVL +CKKEGL++P E A+R+A+ +DRNLRRA+LMCEA KVQ YPF DQ++ EPD
Sbjct: 191 EIASVLHAVCKKEGLSLPSELAMRIAKSADRNLRRALLMCEACKVQHYPFTSDQKVPEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+I+IRDTA +I+SEQSPKKL EVR +LYEL++H +P +V+F LL+ L+ NCD +K K
Sbjct: 251 WQIFIRDTAAMILSEQSPKKLAEVRQKLYELIIHGVPPDVIFAGLLKELVCNCDMSMKCK 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
AA +EHR+ G+K IFHIEA+VA FMA+Y +F+E+ L ++F
Sbjct: 311 IASYAAQYEHRMRLGNKSIFHIEAFVAKFMAIYKKFLEEALGDVF 355
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP +L KLD+H QA L++L+++ DFPHLL YGPSGAGKKTRIM LL+ELY
Sbjct: 1 MSLWVDKHRPKDLMKLDYHKDQAVRLKSLVQQSDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|195472100|ref|XP_002088340.1| GE12972 [Drosophila yakuba]
gi|194174441|gb|EDW88052.1| GE12972 [Drosophila yakuba]
Length = 356
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 218/349 (62%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLD+H QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDYHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP EIVS+L N CK+EGL +P E A R+ +S+RNLRRA+LM EA+KV + PF
Sbjct: 181 GIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW++++R+TA IISEQ+P KL ++R RLYELL+ +P N++F+ L+E L+
Sbjct: 241 TANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLIQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
+NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 SNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSE 349
>gi|19921136|ref|NP_609494.1| replication factor C 38kD subunit [Drosophila melanogaster]
gi|22946236|gb|AAF53076.2| replication factor C 38kD subunit [Drosophila melanogaster]
gi|220942726|gb|ACL83906.1| RfC38-PA [synthetic construct]
gi|220952880|gb|ACL88983.1| RfC38-PA [synthetic construct]
Length = 356
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 216/349 (61%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLDFH QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP EIVS+L N CK+EGL +P E A R+ +S+RNLRRA+LM EA+KV + PF
Sbjct: 181 GIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW++++R+TA IISEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 301 NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSE 349
>gi|28317156|gb|AAD46852.2|AF160912_1 LD06837p, partial [Drosophila melanogaster]
Length = 395
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/349 (44%), Positives = 216/349 (61%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLDFH QA +LRNL K+ DFPHL+F Y
Sbjct: 40 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 99
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 100 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 159
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 160 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 219
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP EIVS+L N CK+EGL +P E A R+ +S+RNLRRA+LM EA+KV + PF
Sbjct: 220 GIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPF 279
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW++++R+TA IISEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 280 TANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV 339
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 340 NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSE 388
>gi|125986059|ref|XP_001356793.1| GA19473 [Drosophila pseudoobscura pseudoobscura]
gi|195148330|ref|XP_002015127.1| GL18586 [Drosophila persimilis]
gi|54645119|gb|EAL33859.1| GA19473 [Drosophila pseudoobscura pseudoobscura]
gi|194107080|gb|EDW29123.1| GL18586 [Drosophila persimilis]
Length = 356
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 220/351 (62%), Gaps = 68/351 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLDFH +QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELTKLDFHKEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GAGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEINGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIMSVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ E+ ++L + CK+EGL +P E A R+ +S+RNLRRA+LM EA+KV + PF
Sbjct: 181 GIRVAAPSEAEMTAILQSTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKSPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
Q++ + DW++++R+TA IISEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TAQQEVPDLDWQVFLRETASQIISEQTPAKLEKIRDRLYELLTQGVPPNLIFRGLVEHLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTL 283
+NCD +K+K++E+A +EHR+ G+K IFH+EA+VA FM++Y +FM + L
Sbjct: 301 SNCDMSIKAKTLELATEYEHRMQNGAKHIFHLEAFVAQFMSIYKKFMSELL 351
>gi|195434074|ref|XP_002065028.1| GK15241 [Drosophila willistoni]
gi|194161113|gb|EDW76014.1| GK15241 [Drosophila willistoni]
Length = 356
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 221/351 (62%), Gaps = 68/351 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLD+H +QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDYHQEQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRNETMTFTTPSNRKIEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+IL NS S++IPAIRSRCL
Sbjct: 121 IEINGQREFRVIVVSEADELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ EI+++L + CK+EGL +P E A R+ +S+RNLRRA+LM EASKV + PF
Sbjct: 181 GIRVAAPSETEIINILQSTCKREGLVLPVELAKRVVDKSERNLRRALLMLEASKVAKSPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I E DW++Y+R+TA I+SEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TANQEIAELDWQVYLRETANQIMSEQTPAKLEKIRERLYELLSQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTL 283
NCD LK+K+++ A+ +EHR+ G+K IFH+EA+VA FM +Y +++ +++
Sbjct: 301 NNCDIVLKAKTLDYASQYEHRMQNGAKHIFHLEAFVAQFMNIYKKYLTESV 351
>gi|198425284|ref|XP_002119398.1| PREDICTED: similar to Replication factor C (activator 1) 3 [Ciona
intestinalis]
Length = 355
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 216/355 (60%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP +L KLD+H +QA +L+ L++ GDFPHLLF Y
Sbjct: 1 MSLWVDKYRPKSLNKLDYHLEQAENLKKLVENGDFPHLLFYGPPGAGKKTRIMCLLREVY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS AG R++ L+K +
Sbjct: 61 GSGVEKLRIEKHNFVTPSKKKLEIAALSSNYHIEVTPSDAGMHDRVVVQELIKTVAQSHQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
VI+L E D LTR+AQ ALRRTMEKY++TCRLIL NS S+VIPAI+SRCL
Sbjct: 121 LESKAQKRFKVIVLTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSKVIPAIQSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ ++++ +LT++ KKEG IP E A R+A S RNLRRA+LM E +VQ P
Sbjct: 181 AVRVAAPSIDDVIKILTSVGKKEGHPIPQELARRIAVASKRNLRRALLMSETCRVQHVPL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ I+EPDW++Y+++TA +I+SEQSP++LLE+R R+YELL IP + + + L + L+
Sbjct: 241 TDDQTIMEPDWELYLKETANMIVSEQSPRRLLEIRNRVYELLTKCIPPDAIMRGLYKELI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + ++AA EHR H G K I+HIEA+VA FMAMY QF+E+ L ++F
Sbjct: 301 HNCDGSLKPELSQLAAECEHRSHLGQKHIYHIEAFVAKFMAMYKQFIEEGLDDMF 355
>gi|195340081|ref|XP_002036645.1| GM11127 [Drosophila sechellia]
gi|194130525|gb|EDW52568.1| GM11127 [Drosophila sechellia]
Length = 351
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/343 (45%), Positives = 212/343 (61%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLDFH QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDFHKDQAANLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP EIVS+L N CK+EGL +P E A R+ +S+RNLRRA+LM EA+KV + PF
Sbjct: 181 GIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q+I + DW++++R+TA IISEQ+P KL ++R RLYELL +P N++F+ L+E L+
Sbjct: 241 TANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y
Sbjct: 301 NNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIY 343
>gi|350424978|ref|XP_003493974.1| PREDICTED: replication factor C subunit 3-like [Bombus impatiens]
Length = 355
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 179/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L D LT+EAQ ALRRTMEKY+TTCRLILCANS S+V+PAIRSRCL IR+PAP+
Sbjct: 131 VVLLTNVDQLTKEAQHALRRTMEKYVTTCRLILCANSTSRVLPAIRSRCLGIRVPAPSIS 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I +L +ICK+EGLT+P E A RLA+ S RNLRRAILM EA KV+QYPF DQ I EPD
Sbjct: 191 DIKDILHSICKREGLTLPDELATRLAECSGRNLRRAILMLEACKVEQYPFTADQSITEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YIR+TA +++SEQ+PKKLL +R RLYELL H+IP +++FK LL+ + NCD LK +
Sbjct: 251 WQVYIRNTANMMVSEQNPKKLLTIRNRLYELLTHAIPCDLIFKGLLQECIKNCDLQLKIE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+AA +EHR+H+GSKPIFH+EA+VA FMA+Y +F++ +L
Sbjct: 311 IATVAAEYEHRMHRGSKPIFHLEAFVARFMAIYKKFIDSSLEGF 354
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 54/61 (88%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L KLD+H +QA +L+N++++GDFPHLL YGPSGAGKKTRIM +++ELY
Sbjct: 1 MSLWVDKYRPTVLGKLDYHKEQAEYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|340724560|ref|XP_003400649.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 3-like
[Bombus terrestris]
Length = 351
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 179/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L D LT+EAQ ALRRTMEKY+TTCRLILCANS S+V+PAIRSRCL IR+PAP+
Sbjct: 127 VVLLTNVDQLTKEAQHALRRTMEKYVTTCRLILCANSTSRVLPAIRSRCLGIRVPAPSIS 186
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I +L +ICK+EGLT+P E A RLA+ S RNLRRAILM EA KV+QYPF DQ I EPD
Sbjct: 187 DIKDILHSICKREGLTLPDELATRLAECSGRNLRRAILMLEACKVEQYPFTADQSITEPD 246
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YIR+TA +++SEQ+PKKLL +R RLYELL H+IP +++FK LL+ + NCD LK +
Sbjct: 247 WQVYIRNTANMMVSEQNPKKLLTIRNRLYELLTHAIPCDLIFKGLLQECIKNCDLQLKIE 306
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+AA +EHR+H+GSKPIFH+EA+VA FMA+Y +F++ +L
Sbjct: 307 IATVAAEYEHRMHRGSKPIFHLEAFVARFMAIYKKFIDSSLEGF 350
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 4/61 (6%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L KLD+H + + + K GDFPHLL YGPSGAGKKTRIM +++ELY
Sbjct: 1 MSLWVDKYRPTALGKLDYH----KNKQTIXKHGDFPHLLVYGPSGAGKKTRIMCIIRELY 56
Query: 61 G 61
G
Sbjct: 57 G 57
>gi|66523693|ref|XP_624376.1| PREDICTED: replication factor C subunit 3 [Apis mellifera]
Length = 355
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 177/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L D LT++AQ ALRRTMEKY+ TCRLILCANS S+V+PAIRSRCL IR+PAP+ +
Sbjct: 131 VVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRCLGIRVPAPSIK 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
I +L ICK+EGLT+P E A RLA+ S RNLRRAILM EA KV+QYPF DQ I EPD
Sbjct: 191 NIKDILHTICKREGLTLPDELATRLAETSGRNLRRAILMLEACKVEQYPFTADQNITEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YIR+TA +++SEQSPKKLL +R RLYELL H+IP +++FK LL+ + NCD LK +
Sbjct: 251 WQVYIRNTANMMVSEQSPKKLLAIRDRLYELLTHAIPCDLIFKGLLQECIKNCDLQLKIE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+AA +EHR+HKGSKPIFH+EA+VA FMA+Y +F++ +L
Sbjct: 311 IATVAAEYEHRMHKGSKPIFHLEAFVARFMAIYKKFIDSSLEGF 354
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 55/61 (90%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L KLD+H +QAN+L+N++++GDFPHLL YGPSGAGKKTRIM ++KELY
Sbjct: 1 MSLWVDKYRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIKELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|383854644|ref|XP_003702830.1| PREDICTED: replication factor C subunit 3-like [Megachile
rotundata]
Length = 355
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 181/225 (80%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L D LT++AQ ALRRTMEKY+ TCR+ILCANS S+V+PAI+SRCL IR+PAP+
Sbjct: 131 VVLLTNVDQLTKDAQHALRRTMEKYVATCRIILCANSTSRVLPAIKSRCLGIRVPAPSIS 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I S+L +ICK+EGLT+P E +R+A+ S RNLRRAILM EA +V+QYPF DQ I EPD
Sbjct: 191 DIKSILHSICKREGLTLPNELGIRVAEASGRNLRRAILMLEACRVEQYPFTADQNIAEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YIR+TA +++SEQSPKKLLE+R RLYELL H+IP +++FK LL+ + NCD LK +
Sbjct: 251 WQVYIRNTANMMVSEQSPKKLLEIRNRLYELLTHAIPCDLIFKGLLQECIKNCDLQLKIE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+AA +EH++H+GSKPIFH+EA+VA FMA+Y +F++ TL +
Sbjct: 311 IATVAAEYEHKMHRGSKPIFHLEAFVARFMAIYKKFIDSTLEDFM 355
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L KLD+H +QA +LRN++K+GDFPHLL YGPSGAGKKTRI+ +LKELY
Sbjct: 1 MSLWVDKYRPTTLGKLDYHQEQAEYLRNMVKKGDFPHLLVYGPSGAGKKTRILCILKELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|156383529|ref|XP_001632886.1| predicted protein [Nematostella vectensis]
gi|156219948|gb|EDO40823.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 214/355 (60%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDF------HCKQANH------------------------LRNLL 30
MSLWVDKYRP +L KLD+ H K+ H LR L
Sbjct: 1 MSLWVDKYRPTSLGKLDYHKDLAAHLKKLVHSGDFPHLLVYGPSGAGKKTRITCILRELY 60
Query: 31 KEG----DFPHLLFYGPS----------------------GAGKKTRIMALLK------- 57
G H F PS G + + LLK
Sbjct: 61 GSGVEKLKIEHHSFTTPSNKKVEISTIGSIFHLEVNASDVGIYDRVVVQELLKNTAQAHS 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
EL V++L E D LT++AQ ALRRTMEKY +TCRLILC NS S+VIPAIRSRCL
Sbjct: 121 LELSAHRDFKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+RIPAP+ EEI +L +CKKEGLTIP E + R+A++S RNLR+A+LMCEA KVQQYPF
Sbjct: 181 GVRIPAPSVEEICQILQFVCKKEGLTIPSELSRRIAEKSGRNLRKALLMCEACKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + E DW++Y+R+TA+ I+ Q+P++L E+R RLYELL H IP +++ K LL+ LL
Sbjct: 241 TPDQPVQEADWEMYLRETAQQIVQTQTPRRLYEIRGRLYELLTHCIPADIIIKGLLKELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK++ +AA +EHRI GSK I+H+EA+VA FM++Y +F+E+ ++++F
Sbjct: 301 TNCDGTLKAEVTNLAAFYEHRILLGSKAIYHLEAFVAKFMSIYKRFLEEGMADMF 355
>gi|380021906|ref|XP_003694797.1| PREDICTED: LOW QUALITY PROTEIN: replication factor C subunit 3-like
[Apis florea]
Length = 355
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 177/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L D LT++AQ ALRRTMEKY+ TCRLILCANS S+V+PAIRSRCL IR+PAP+ +
Sbjct: 131 VVLLTNVDQLTKDAQHALRRTMEKYVATCRLILCANSTSRVLPAIRSRCLGIRVPAPSIK 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
I +L ICK+EGLT+P E A RLA+ S RNLRRAILM EA KV+QYPF DQ I EPD
Sbjct: 191 NIKDILHTICKREGLTLPDELATRLAETSGRNLRRAILMLEACKVEQYPFTGDQNITEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YIR+TA +++SEQSPKKLL +R RLYELL H+IP +++FK LL+ + NCD LK +
Sbjct: 251 WQVYIRNTANMMVSEQSPKKLLAIRDRLYELLTHAIPCDLIFKGLLQECIKNCDLQLKIE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+AA +EHR+HKGSKPIFH+EA+VA FMA+Y +F++ +L
Sbjct: 311 IATVAAEYEHRMHKGSKPIFHLEAFVARFMAIYKKFIDSSLEGF 354
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 55/61 (90%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L KLD+H +QAN+L+N++++GDFPHLL YGPSGAGKKTRIM ++KELY
Sbjct: 1 MSLWVDKYRPTTLGKLDYHKEQANYLKNMIQKGDFPHLLVYGPSGAGKKTRIMCIIKELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|289741699|gb|ADD19597.1| replication factor C subunit RFC3 [Glossina morsitans morsitans]
Length = 356
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 215/351 (61%), Gaps = 68/351 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDK+RP L +LD+H QA +LRNL ++GDFPHL+F Y
Sbjct: 1 MALWVDKHRPRELSRLDYHKNQAENLRNLCQQGDFPHLMFYGPSGAGKKTRIMCLLRELY 60
Query: 42 G-----------------------------------PSGAGKKTR--IMALLKELYG--- 61
G PS AG R I+ L+K++
Sbjct: 61 GAGVERLRNEIMTFTTSSNRKISIMTIGSNYHLEVNPSDAGIYDRVVIIDLIKQVAQVHQ 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
+I+L+E D LT++AQ ALRRTMEKY+ TCR+IL NS S++IPAIRSRCL
Sbjct: 121 IDPNGQREFKIIVLSEVDELTKDAQHALRRTMEKYVATCRIILSVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP +EI ++L +I KKEG+ +P E A R+ Q+S+RNLR AILM E KVQQYPF
Sbjct: 181 GIRVAAPRPDEIATILQHISKKEGVVLPSELAKRVVQKSERNLRLAILMLETCKVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ Q+IV DWK Y+R+TA II+EQ+P KL ++R RLYELL +P +V+F+ L + L+
Sbjct: 241 TVQQEIVGLDWKTYLRETANQIITEQTPAKLEKIRDRLYELLAQGVPPDVIFQGLAKDLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTL 283
N D +K+K +E A+++EHR+ GSK IFH+EA+VA FM +Y +F+ D++
Sbjct: 301 CNSDMSIKAKVLEYASLYEHRMQNGSKYIFHLEAFVAHFMNIYKKFLADSM 351
>gi|312381002|gb|EFR26856.1| hypothetical protein AND_06782 [Anopheles darlingi]
Length = 378
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 216/372 (58%), Gaps = 88/372 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVD+YRP L KLD+H QAN L NL +GDFPHL+F Y
Sbjct: 1 MALWVDRYRPRELAKLDYHKTQANQLINLCSQGDFPHLMFYGPSGAGKKTRIICLLRELY 60
Query: 42 GP-------------SGAGKKTRIMALLKELYGPV------------------------- 63
GP + + KK IM + + V
Sbjct: 61 GPGVERLRNEVMHFTTPSNKKIEIMTVSSNYHIEVNPSDVGIYDRVVITDMIKQIAQTQQ 120
Query: 64 -----------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
I+L+E D LT++AQ ALRRTMEKY+ TCRL+LC NS S++IPA++SRCL
Sbjct: 121 IDPTGQRDFKTIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRIIPAVKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLT--------------------NICKKEGLTIPPEFALRLAQQSD 152
IR+ +PT EEI+ ++ ICKKEGL IPPE A R+A++S+
Sbjct: 181 GIRVSSPTEEEIIGIMNVSKGVSSIHCSFADECLSPQTICKKEGLHIPPELAQRIAKKSE 240
Query: 153 RNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYE 212
RNLRRAIL EA KVQQYPF +Q + + DW++Y+R+TA +I+ EQ+P+++ VR RLYE
Sbjct: 241 RNLRRAILSLEACKVQQYPFTANQDVPDMDWQVYLRETANMIVQEQTPQRMEVVRERLYE 300
Query: 213 LLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
LL IP +++FK L++ L+ NCD LK++++ A +++HR+ +GSK IFH+EA+VA FM
Sbjct: 301 LLSQGIPPDIIFKGLVKILVQNCDMSLKAQTLCYAGLYDHRMQRGSKHIFHLEAFVAQFM 360
Query: 273 AMYLQFMEDTLS 284
++Y +F+ S
Sbjct: 361 SLYKKFLNQVAS 372
>gi|335772678|gb|AEH58141.1| replication factor C subunit 3-like protein, partial [Equus
caballus]
Length = 304
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/263 (54%), Positives = 188/263 (71%), Gaps = 14/263 (5%)
Query: 39 LFYGPSGAGKKTRIM--ALLKELYGP------------VIILNETDHLTREAQQALRRTM 84
L PS AG R++ +LK + V++L E D LT++AQ ALRRTM
Sbjct: 41 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 100
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E+I VLT +CKKEGL +P + A
Sbjct: 101 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLTTVCKKEGLNLPSQLA 160
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E DW++Y+R+TA I+S+Q+P++LL
Sbjct: 161 HRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLL 220
Query: 205 EVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHI 264
EVR RLYELL H IP ++ K LL LL NCD LK + +MAA +EHR+ GSK I+H+
Sbjct: 221 EVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHL 280
Query: 265 EAYVASFMAMYLQFMEDTLSNLF 287
EA+VA FMA+Y +FMED L +
Sbjct: 281 EAFVAKFMALYKKFMEDGLEGMM 303
>gi|321478378|gb|EFX89335.1| hypothetical protein DAPPUDRAFT_190647 [Daphnia pulex]
Length = 355
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 181/225 (80%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+IL E D LT++AQ ALRRTMEKY+TTCRLILCANS S++I ++SRCL IR+PAP+ +
Sbjct: 131 VVILTEVDKLTKDAQHALRRTMEKYMTTCRLILCANSTSKIIAPLQSRCLAIRVPAPSQD 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I+ VL + KKEG+T+P +FA+RLA++S+RNLRRA+LM EA KVQQYPF + Q+IVEPD
Sbjct: 191 DIIKVLQMVSKKEGITLPADFAIRLAERSERNLRRALLMLEACKVQQYPFSVKQEIVEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+T + ++SEQSPK LLEVR R+YELL H I ++ K LL+ +L NCD LK++
Sbjct: 251 WEVYLRETGQKMVSEQSPKALLEVRGRIYELLSHCIAPEMIIKKLLKEILKNCDGQLKAE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
MAA +EHR+ GSK IFHIEA+VA FMA+Y +F+ED+ +N+
Sbjct: 311 VTSMAAYYEHRLCLGSKVIFHIEAFVAKFMAIYKRFLEDSFANMM 355
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 52/64 (81%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRPN L KLDFH +Q L+ ++ +G+FPHLL YGP GAGKKTR+ ALL+ELY
Sbjct: 1 MSLWVDKYRPNTLAKLDFHLEQGERLQKMVTKGNFPHLLIYGPPGAGKKTRVSALLRELY 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPGV 64
>gi|432094499|gb|ELK26061.1| Replication factor C subunit 3 [Myotis davidii]
Length = 425
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 135/225 (60%), Positives = 176/225 (78%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+++L E D LTR+AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL IR+PAP+ E
Sbjct: 200 MVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIE 259
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E D
Sbjct: 260 DICHVLSTVCKKEGLNLPSQLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETD 319
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 320 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 379
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 380 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 424
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 33 GDFPHLLFYGPSGAGKKTRIMALLKELYG 61
GDFPHLL YGPSGAGKKTRIM +L+ELYG
Sbjct: 31 GDFPHLLVYGPSGAGKKTRIMCILRELYG 59
>gi|91089203|ref|XP_966829.1| PREDICTED: similar to replication factor C subunit 3 [Tribolium
castaneum]
gi|270012468|gb|EFA08916.1| hypothetical protein TcasGA2_TC006622 [Tribolium castaneum]
Length = 354
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/353 (42%), Positives = 206/353 (58%), Gaps = 68/353 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
LW DKYRP L L +H +QA LRNL K+GDFPHLL YGP
Sbjct: 2 LWADKYRPKELSSLSYHKQQALDLRNLTKDGDFPHLLVYGPLGAGKKTRIMCLLRELYGP 61
Query: 44 S-------------------------------------GAGKKTRIMALLKELYGP---- 62
G + IM ++K +
Sbjct: 62 GVDRLKVETMNFTTPSNKKLEISTVGSNYHIEVNPSDVGINDRVVIMDVIKNVAQSQQLN 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
VI+L + D+LT++AQ ALRRTMEKYI CR+ILC S+S+VIPAIRSRCLCI
Sbjct: 122 ANTQREFKVILLTDVDNLTKDAQHALRRTMEKYIANCRIILCTTSISRVIPAIRSRCLCI 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+PAP+ ++I S+LTN+ KE +++PPE A R+A++SDRNLRRA+LMCEA KVQ+
Sbjct: 182 RVPAPSIDDITSILTNVAAKESVSLPPELAKRIAEKSDRNLRRALLMCEACKVQKQGLVA 241
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
Q + EPDW+I+IR+ A I+ EQS L ++R LYEL++ IP ++F LLE +L N
Sbjct: 242 SQSVSEPDWQIFIRNIASKIVKEQSIATLAKIRENLYELIIFGIPSEIIFNTLLEEMLKN 301
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
CD +L + +E AA++EHR+ +G+K IFH+EA+VA M +Y M++ ++ F
Sbjct: 302 CDLELGRQIVEQAALYEHRMAQGNKEIFHLEAFVAKCMCLYQNMMQELMACEF 354
>gi|326914292|ref|XP_003203460.1| PREDICTED: replication factor C subunit 3-like [Meleagris
gallopavo]
Length = 344
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/259 (54%), Positives = 188/259 (72%), Gaps = 14/259 (5%)
Query: 43 PSGAGKKTRIM--ALLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS AG R++ LLK + V++L E D LT++AQ ALRRTMEKY+
Sbjct: 85 PSDAGNNDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYM 144
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
TCRLILC NS+S++I I+SRCL +R+PAP+ E+I VL+++CKKEGLT+P E A RLA
Sbjct: 145 ATCRLILCCNSISKIIGPIQSRCLTVRVPAPSIEDICHVLSSVCKKEGLTLPQELAQRLA 204
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
++S RNLR+A+LMCE+ +VQQYPF DQ I E DW+IY+R+TA I+S+Q+P++LLEVR
Sbjct: 205 EKSGRNLRKALLMCESCRVQQYPFSADQDIPEMDWEIYLRETANAIVSQQTPQRLLEVRG 264
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
RLYELL H IP ++ K LL LL NCD LK + +MAA +EHR+ GSK I+H+EA+V
Sbjct: 265 RLYELLTHCIPPEIIMKGLLTELLNNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFV 324
Query: 269 ASFMAMYLQFMEDTLSNLF 287
A FMA+Y +FMED L ++
Sbjct: 325 AKFMAIYKKFMEDGLDDMM 343
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 33 GDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
GDFPHLL YGPSGAGKKTRIM LL+ELYG +
Sbjct: 21 GDFPHLLVYGPSGAGKKTRIMCLLRELYGAGV 52
>gi|410926989|ref|XP_003976950.1| PREDICTED: replication factor C subunit 3-like [Takifugu rubripes]
Length = 356
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 173/225 (76%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY TCRLILC+ S S+VI IRSRCL IR+P P+ E
Sbjct: 131 VVLLTEVDRLTKDAQHALRRTMEKYTATCRLILCSTSTSKVIGPIRSRCLAIRVPLPSTE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+ SVLT +CKKEGL +PPE A +++++S RNLR+A+LMCEA +VQQYPF DQ+I D
Sbjct: 191 EVCSVLTAVCKKEGLLLPPELAKQISERSGRNLRKALLMCEACRVQQYPFSADQEIPVAD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W IY+R+TA I+S+QSP++LLEVR RLYELL H IP +V+ K LL LL NCD LK++
Sbjct: 251 WVIYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPDVIMKGLLTELLNNCDGQLKTE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+AA +EHR+ G+K I+H+EA+VA FMAMY +FMED L +
Sbjct: 311 VAHLAAYYEHRLQLGNKAIYHLEAFVARFMAMYKKFMEDGLDGMM 355
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L KLD+H +QA LRNL++ GDFPHLL YGPSG GKK+RIM LL+ELY
Sbjct: 1 MSLWVDKYRPTSLSKLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGGGKKSRIMCLLRELY 60
Query: 61 GPVIILNETDHLT 73
G + +H T
Sbjct: 61 GAGVEKLRMEHQT 73
>gi|157116416|ref|XP_001658466.1| Rfc5p, putative [Aedes aegypti]
gi|108876490|gb|EAT40715.1| AAEL007581-PA [Aedes aegypti]
Length = 358
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 128/217 (58%), Positives = 174/217 (80%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
I+L+E D LT++AQ ALRRTMEKY+ TCRL+LC NS S+VIPA++SRCL IR+ APT+E
Sbjct: 131 TIVLSEVDELTKDAQHALRRTMEKYVATCRLVLCVNSTSRVIPAVKSRCLGIRVSAPTNE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EIVS+L NICKKEGL IP E A R+ ++S+RNLRRAILM EA KVQQYPF ++Q++ E D
Sbjct: 191 EIVSILNNICKKEGLHIPSELATRITEKSERNLRRAILMLEACKVQQYPFTVNQEVPEID 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++++R+TA I+ EQSP+KL VR RLYELL +P +++F+ L+E L+ NCD LK++
Sbjct: 251 WQVFLRETANQIVQEQSPQKLEAVRERLYELLSQGVPSDIIFRGLVENLVKNCDMSLKTQ 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
++ A +EHR+ +GSK IFH+EA+VA FMA+Y +F+
Sbjct: 311 TLNFAGTYEHRMQQGSKHIFHLEAFVAQFMALYKKFL 347
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LWVD+YRP L KLD+H QA HL NL +GDFPHL+FYGPSGAGKKTRIM LL+ELY
Sbjct: 1 MALWVDRYRPRELSKLDYHKTQATHLTNLCAQGDFPHLMFYGPSGAGKKTRIMCLLRELY 60
Query: 61 GPVI 64
G +
Sbjct: 61 GSGV 64
>gi|405950338|gb|EKC18333.1| Replication factor C subunit 3 [Crassostrea gigas]
Length = 354
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 130/225 (57%), Positives = 178/225 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC S S+VIPAIRSRCL IR+ AP+ +
Sbjct: 130 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCVSTSKVIPAIRSRCLGIRVAAPSID 189
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI +L +CKKEG IP E A R+A++S RNLRRA+LM EA KVQQ P + DQ++ EPD
Sbjct: 190 EITQILQTVCKKEGCPIPTELAKRVAEKSKRNLRRALLMAEACKVQQTPLKPDQEVSEPD 249
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA +II +QSP++LLEVR RLYELL H IP +++ K LL+ L+ NCD +LK++
Sbjct: 250 WEVYLRETANMIIQQQSPRRLLEVRGRLYELLTHCIPADIIMKGLLQELINNCDGELKTE 309
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
++ AA F+HR+ G K I+H+EA+VA FMA+Y +FME+ +++LF
Sbjct: 310 VVQSAAFFQHRLQLGQKAIYHLEAFVAKFMAIYKRFMEENIADLF 354
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP++L KLD+H QA L+ L+ GDFPHLL YGPSGAGKKTRIM LL+ELY
Sbjct: 1 MSLWVDKHRPSSLNKLDYHKDQATLLKKLVHGGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|345492555|ref|XP_001600907.2| PREDICTED: replication factor C subunit 3-like [Nasonia
vitripennis]
Length = 355
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/225 (59%), Positives = 173/225 (76%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L DHLT++AQ ALRRTMEKY+ TCRLILC+NS S+V+PAIRSRCL IR+PAPT +
Sbjct: 131 VVLLTNVDHLTKDAQHALRRTMEKYVGTCRLILCSNSTSRVLPAIRSRCLGIRVPAPTTD 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI S+L ++ KKE LTIP E A RLA S RNLRRAILM EA KV+QYPF DQ+I EPD
Sbjct: 191 EIKSILHSVAKKESLTIPDELASRLAGSSGRNLRRAILMLEACKVEQYPFTADQKITEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+IYI+ A +++SEQSP+KLLE+R R YELL H+IP +++F+ LL+ + CD LK +
Sbjct: 251 WQIYIKGIASMMVSEQSPRKLLEIRNRFYELLTHAIPTDLIFRGLLQEVTKKCDLQLKIE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+AA +EHR+H GSK IFH+EA+ A FMA+Y ++M+ +L
Sbjct: 311 IATVAAEYEHRMHYGSKVIFHLEAFAARFMAIYKKYMDASLEGFM 355
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L KLD+H QA L+N++++GDFPHLL YGP GAGKKTRIM +LKELY
Sbjct: 1 MSLWVDKYRPTSLGKLDYHTDQAQQLKNMVQQGDFPHLLIYGPPGAGKKTRIMCILKELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|72016481|ref|XP_779912.1| PREDICTED: replication factor C subunit 3 isoform 1
[Strongylocentrotus purpuratus]
Length = 356
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 130/225 (57%), Positives = 171/225 (76%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY TCRLILC NS S+VIPAIRSRCL +R+ AP+
Sbjct: 131 VVVLTEVDRLTKDAQHALRRTMEKYTATCRLILCCNSTSKVIPAIRSRCLGVRVAAPSIA 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI +L N+CKKEGL +P E A R+A++S+RNLR+AIL CEA KVQQYPF DQ I E D
Sbjct: 191 EITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYPFSADQDIPEAD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++++RDTA II +QSP++LLEVR R+YELL H IP +V+ K LL LL NCD LK++
Sbjct: 251 WEVFLRDTANHIIQQQSPRQLLEVRGRMYELLTHCIPADVILKGLLRELLKNCDGQLKTQ 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
AA +EHR+ +G+K I+H+EA+VA FM++Y +F+E+ +
Sbjct: 311 VTHQAAFYEHRMQQGNKAIYHLEAFVAKFMSIYKRFLEEGFEAMM 355
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP L KLD+H +QA++L+ L++ GDFPHL+ YGPSGAGKKTRIM LKELY
Sbjct: 1 MSLWVDKHRPTALSKLDYHKEQASNLKKLVQSGDFPHLMVYGPSGAGKKTRIMCALKELY 60
Query: 61 GPVIILNETDHLT 73
G + +H T
Sbjct: 61 GSGVEKLRIEHQT 73
>gi|47227059|emb|CAG00421.1| unnamed protein product [Tetraodon nigroviridis]
Length = 356
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 131/225 (58%), Positives = 174/225 (77%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC+ S S+VI I+SRCL +R+P P+ E
Sbjct: 131 VVVLTEVDRLTKDAQHALRRTMEKYMSTCRLILCSTSTSKVIGPIQSRCLAVRVPLPSTE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+ VLT +CKKEGL +PPE A ++++ S RNLRRA+LMCEA +VQQYPF +Q+I D
Sbjct: 191 EVCGVLTAVCKKEGLHLPPELARQISEASGRNLRRALLMCEACRVQQYPFSAEQEIPVAD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W IY+R+TA I+S+QSP++LLEVR RLYELL H IP +V+ K L+ LL+NCD LK++
Sbjct: 251 WVIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPDVIMKGLVTELLSNCDGQLKTE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
MAA +EHR+ G+K I+H+EA+VA FMA+Y +FMED L L
Sbjct: 311 VAHMAACYEHRLQLGNKAIYHLEAFVAKFMAVYKKFMEDGLEGLM 355
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP ++ KLD+H +QA L+NL++ GDFPHLL YGP GAGKKTRIM LL+ELY
Sbjct: 1 MSLWVDKYRPTSISKLDYHKEQAAQLKNLVQCGDFPHLLVYGPPGAGKKTRIMCLLRELY 60
Query: 61 GPVIILNETDHLT 73
G + +H T
Sbjct: 61 GAGVEKLRIEHQT 73
>gi|221121640|ref|XP_002167209.1| PREDICTED: replication factor C subunit 3-like [Hydra
magnipapillata]
Length = 355
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 176/225 (78%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VI+L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI AI+SRCL IR+P+P+ E
Sbjct: 131 VILLMEVDRLTKDAQHALRRTMEKYVATCRLILCCNSTSKVISAIQSRCLGIRVPSPSTE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+V L ++CKKEGL +P E A R+AQ+++ N+RRA+LMCEA +VQQYPF DQ I E D
Sbjct: 191 EVVQTLNSVCKKEGLNLPSELANRIAQKAEGNMRRALLMCEACRVQQYPFTADQSIQEAD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ Y++ TA +II +Q+P++L+E+RTR+YELL H IP V+ K LL L+ NCD LK +
Sbjct: 251 WETYLKQTANMIIEQQTPQRLMEIRTRIYELLTHCIPAEVIIKGLLRELVKNCDGSLKCE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+++AA +EHR+ G+K I+H+EA+VA FM++Y +F E+ ++++F
Sbjct: 311 IVQLAAHYEHRLQLGTKAIYHLEAFVAKFMSVYKRFFEEGMADMF 355
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 50/64 (78%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLW+DK+RP NL KL +H +QA L+ L+ DFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWIDKHRPTNLSKLTYHLEQAGRLKKLVNNADFPHLLIYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVI 64
G +
Sbjct: 61 GAGV 64
>gi|196006351|ref|XP_002113042.1| hypothetical protein TRIADDRAFT_26016 [Trichoplax adhaerens]
gi|190585083|gb|EDV25152.1| hypothetical protein TRIADDRAFT_26016 [Trichoplax adhaerens]
Length = 355
Score = 276 bits (705), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 130/224 (58%), Positives = 174/224 (77%), Gaps = 2/224 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VI++ E D LT++AQ ALRRTMEKYI+TCRLILC NS S+VIPA+RSRCL IR+ APT +
Sbjct: 131 VIVVMELDRLTKDAQHALRRTMEKYISTCRLILCCNSTSRVIPAVRSRCLGIRVAAPTAD 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E ++L +CKKEGLT+ E A+R+A+QS RNLRRA+LMCEA KVQQYPF DQ + E +
Sbjct: 191 E--ALLHGVCKKEGLTLNQELAVRIAEQSKRNLRRALLMCEACKVQQYPFTPDQPVSEAE 248
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+IY+R+TA I+ +Q+PK+LLEVR RLYELL H IP +V+ K LL L+ N D LK++
Sbjct: 249 WEIYLRETAAAIVEQQNPKRLLEVRARLYELLCHCIPPDVIIKGLLSELIVNSDGQLKTE 308
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+AA +EHRI G K IFH+EA+VA FM++Y +F+++ ++ +
Sbjct: 309 ITALAAFYEHRIQMGRKAIFHLEAFVAKFMSIYKRFLDEGMAAM 352
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 58/75 (77%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L KLD+H A L+NL++ GDFPHLLFYGPSGAGKKTRIMA+L+ELY
Sbjct: 1 MSLWVDKYRPTSLSKLDYHKDLAEQLKNLIQSGDFPHLLFYGPSGAGKKTRIMAMLRELY 60
Query: 61 GPVIILNETDHLTRE 75
G + +H T E
Sbjct: 61 GAGVEKLRVEHQTFE 75
>gi|427795367|gb|JAA63135.1| Putative replication factor c subunit rfc3, partial [Rhipicephalus
pulchellus]
Length = 382
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 173/225 (76%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+IL E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VIPAIRSRCL IR+ AP+ +
Sbjct: 158 VVILTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSCSKVIPAIRSRCLAIRVAAPSVD 217
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+++VL + +KEG+T+P A +A QS RNLRRA+LM EA + QQYPF +Q++ +PD
Sbjct: 218 EVITVLNLVARKEGITLPDTLAQAIAAQSHRNLRRAVLMLEACRAQQYPFSDNQKVRQPD 277
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+ +TAK+I+ EQS K+L EVR RLYELL H IP +V+ K LL+ ++ANCD LK +
Sbjct: 278 WELYLEETAKMIVQEQSVKRLSEVRARLYELLTHLIPPDVILKGLLKQVVANCDGQLKGE 337
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+ +AA +EHR+ GSK I+H+EA+VA MA+Y F+++++S F
Sbjct: 338 ATALAAQYEHRLQLGSKAIYHLEAFVAKVMAIYKNFLDESISGFF 382
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP NL KLD+H +QA +L+ L+ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 3 MSLWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELY 62
Query: 61 G 61
G
Sbjct: 63 G 63
>gi|391337617|ref|XP_003743163.1| PREDICTED: replication factor C subunit 3-like [Metaseiulus
occidentalis]
Length = 362
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/220 (57%), Positives = 165/220 (75%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+IL E D L+R+AQ ALRRTMEKY+ +CRLIL NS ++VIPAIRSRCL IR+PAP+
Sbjct: 138 VVILTEVDRLSRDAQHALRRTMEKYMQSCRLILVCNSTTKVIPAIRSRCLGIRVPAPSSS 197
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EIV +L I KKE L +P E A ++AQ S NLR+AILM EA +V+QYPF DQ ++ PD
Sbjct: 198 EIVGILNYIAKKESLNLPQELAQKIAQSSTGNLRKAILMLEACRVKQYPFSADQDVILPD 257
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+IYIRDTA II EQ+P+KL +VR RLYELL H +P ++F+ LL+ LL D +K +
Sbjct: 258 WEIYIRDTANEIIKEQTPQKLFDVRQRLYELLSHLVPPQLIFEELLQRLLEKTDDSIKGR 317
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDT 282
I AA++EHR+H GSKPIFH+E +VA +MA+Y ++ E+
Sbjct: 318 IIAEAALYEHRMHLGSKPIFHLEGFVAKYMAVYCEYQEEA 357
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+L+VDKYRP +L+KLD+H KQA+ L+ L+ GD PHLL YGPSGAGKKTRIMA LKEL+
Sbjct: 1 MALYVDKYRPKDLEKLDYHKKQASWLKGLVNGGDLPHLLVYGPSGAGKKTRIMATLKELF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|226469848|emb|CAX70205.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 357
Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/353 (42%), Positives = 203/353 (57%), Gaps = 68/353 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANH------------------------------LRNLL 30
MSLWVDKY P +L KLD+H KQA + LR L
Sbjct: 1 MSLWVDKYTPTSLGKLDYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELY 60
Query: 31 KEG----DFPHLLFYGPS----------------------GAGKKTRIMALLKELYGP-- 62
G H F PS G + I L+K +
Sbjct: 61 GSGVDKLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTAQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L+E DHLTR+AQ ALRRTMEKYI+TCRLIL A S S++I A RSRCL
Sbjct: 121 LDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ +EIV +L N ++EG T+P E A R+A S+RNLRRA+L E ++ Q P
Sbjct: 181 PIRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVARWQHSPM 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + PDW+ ++ +TA I++EQSPKK+LEVR RLYELL H IP NV+ + L++ LL
Sbjct: 241 LPDQSVQLPDWQAFLSETASAILAEQSPKKILEVRNRLYELLCHCIPPNVIMRGLVDNLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285
+CD +LK + +++ A +EHR++ G KPIFH+EA+V +FMA+Y +++ED L +
Sbjct: 301 NSCDRNLKLELVQLGAEYEHRLNLGQKPIFHLEAFVIAFMAIYKRYIEDALGS 353
>gi|256080226|ref|XP_002576383.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|353231808|emb|CCD79163.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 357
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 204/353 (57%), Gaps = 68/353 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANH------------------------------LRNLL 30
MSLWVDKY P +L KLD+H KQA + LR L
Sbjct: 1 MSLWVDKYTPTSLGKLDYHKKQAKNLKKLVDSSNFPHLLVYGPSGAGKRTRIMCILRELY 60
Query: 31 KEG----DFPHLLFYGPS----------------------GAGKKTRIMALLKELYGP-- 62
G H F PS G + I L+K +
Sbjct: 61 GSGVDRLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTAQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L+E DHLTR+AQ ALRRTMEKYI+TCRLIL A S S++I A RSRCL
Sbjct: 121 LDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ +EIV +L N ++EG ++P E A R+A S+RNLRRA+L E +K Q P
Sbjct: 181 PIRVSAPSIDEIVEILRNTARREGHSMPVELAKRIALASERNLRRALLYAEVAKWQHCPM 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + PDW++++ +TA I++EQSPKK+LEVR RLYELL H IP N++ + L++ LL
Sbjct: 241 LPDQSVQLPDWQVFLTETASAILAEQSPKKILEVRNRLYELLCHCIPPNIIMRGLVDNLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285
+CD +LK + +++ A +EHR++ G KPIFH+EA+V +FMA+Y +++ED L +
Sbjct: 301 NSCDRNLKLELVQLGAEYEHRLNLGQKPIFHLEAFVIAFMAIYKRYIEDALGS 353
>gi|226469850|emb|CAX70206.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 357
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 203/353 (57%), Gaps = 68/353 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANH------------------------------LRNLL 30
MSLWVDKY P +L KL++H KQA + LR L
Sbjct: 1 MSLWVDKYTPTSLGKLNYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELY 60
Query: 31 KEG----DFPHLLFYGPS----------------------GAGKKTRIMALLKELYGP-- 62
G H F PS G + I L+K +
Sbjct: 61 GSGVDKLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTAQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L+E DHLTR+AQ ALRRTMEKYI+TCRLIL A S S++I A RSRCL
Sbjct: 121 LDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ +EIV +L N ++EG T+P E A R+A S+RNLRRA+L E ++ Q P
Sbjct: 181 PIRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLYAEVARWQHSPM 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ + PDW+ ++ +TA I++EQSPKK+LEVR RLYELL H IP NV+ + L++ LL
Sbjct: 241 LPDQSVQLPDWQAFLCETASAILAEQSPKKILEVRNRLYELLCHCIPPNVIMRGLVDNLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285
+CD +LK + +++ A +EHR++ G KPIFH+EA+V +FMA+Y +++ED L +
Sbjct: 301 NSCDRNLKLELVQLGAEYEHRLNLGQKPIFHLEAFVIAFMAIYKRYIEDALGS 353
>gi|346470469|gb|AEO35079.1| hypothetical protein [Amblyomma maculatum]
Length = 388
Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 169/225 (75%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY+ TCRL+LC NS S+VIPAIRSRCL IR+ AP+ E
Sbjct: 164 VVVLTEVDKLTKDAQHALRRTMEKYMATCRLVLCCNSCSKVIPAIRSRCLGIRVAAPSIE 223
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E ++VL + +KE + +P A +A QS RNLRRA+LM EA + QQYPF +Q++ +PD
Sbjct: 224 ETITVLNLVARKENINLPDTLARTIAAQSHRNLRRAVLMLEACRAQQYPFSDNQKVRQPD 283
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+ +TA++I+ EQS K+L EVR RLYELL H IP +V+ K LL+ +++NCD LK
Sbjct: 284 WEVYLEETARMIVQEQSVKRLSEVRARLYELLTHLIPPDVILKGLLKQVVSNCDGQLKGV 343
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+ +AA +EHR+ GSK I+H+EA+VA MA+Y F+++++S F
Sbjct: 344 ATALAAQYEHRLQLGSKAIYHLEAFVAKVMAVYKNFLDESMSGFF 388
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP NL KLD+H +QA +L+ L+ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 34 MSLWVDKHRPTNLSKLDYHQEQAAYLKKLVHGGDFPHLLVYGPSGAGKKTRIMCVLRELY 93
Query: 61 GPVI 64
G +
Sbjct: 94 GAGV 97
>gi|241237969|ref|XP_002401228.1| replication factor C, subunit RFC3, putative [Ixodes scapularis]
gi|215496129|gb|EEC05770.1| replication factor C, subunit RFC3, putative [Ixodes scapularis]
Length = 353
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/253 (50%), Positives = 173/253 (68%), Gaps = 9/253 (3%)
Query: 34 DFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRL 93
D PH++ G + A L V++L E D LTREAQ ALRRTMEKY+ +CRL
Sbjct: 110 DCPHIIVRGKG-------LTAACAPL--AVVLLAEVDKLTREAQHALRRTMEKYMASCRL 160
Query: 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153
ILC NS S+VIPAIRSRCL +R+ AP+ +++ VL +C+KEGL +P A +A QS R
Sbjct: 161 ILCCNSCSKVIPAIRSRCLGVRVAAPSLDQVADVLRLVCRKEGLQLPDALAQSVAAQSGR 220
Query: 154 NLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYEL 213
NLRRA+LM EA +VQQYPF Q++ PDW++++ TA +++ EQSPK+L EVR RLYEL
Sbjct: 221 NLRRALLMLEACRVQQYPFSATQEVRRPDWEVFLAATAHMVVQEQSPKRLFEVRGRLYEL 280
Query: 214 LVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273
L H IP +V+FK L+ G+ ++CD L+ + AA +EHR+ GSK ++H+EA+VA MA
Sbjct: 281 LTHLIPPDVIFKGLVRGISSSCDGQLRCTLVSEAARYEHRLQLGSKAVYHLEAFVARAMA 340
Query: 274 MYLQFMEDTLSNL 286
MY F+E+ L
Sbjct: 341 MYRDFLEEAAGAL 353
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M LWVDK+RP +L KLD+H +QA +L+ L++ GDFPHLL YGPSGAGKKTRIM LL+ELY
Sbjct: 1 MGLWVDKHRPVSLAKLDYHKEQATYLKKLVQGGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 61 GPVI 64
G +
Sbjct: 61 GAGV 64
>gi|358336212|dbj|GAA33502.2| replication factor C subunit 3/5, partial [Clonorchis sinensis]
Length = 367
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 171/223 (76%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L+E DHLT++AQ ALRRTMEKYI+TCRLIL A S+S++I A RSRCL IR+ AP+ +
Sbjct: 141 VVVLHEADHLTKDAQHALRRTMEKYISTCRLILSAESISKIISATRSRCLPIRVAAPSID 200
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+IV +L N ++EG ++P E A R+A S+RNLRRA+L+ E +K Q P +Q + PD
Sbjct: 201 QIVHILKNTARREGQSMPTELAERIANASERNLRRALLLAEVAKWQHSPMSAEQPVQLPD 260
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++++ +TA I++EQSP+K+LE+R RLYELL H IP +V+ + L++ LL +CD +LK +
Sbjct: 261 WQVFLAETASAILAEQSPRKILEIRARLYELLSHCIPTDVIMRCLVDNLLGSCDGNLKLE 320
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285
+++AA +EHR+ G KPIFH+EA+V SFMA+Y +F+ED L +
Sbjct: 321 LVQLAAEYEHRLQLGQKPIFHLEAFVISFMAIYKRFVEDALGS 363
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKY P +LQKLD+H ++A L+NL+ G+FPHLL YGPSG+GK+TRIM LL+ELY
Sbjct: 11 MSLWVDKYAPTSLQKLDYHQQEATALKNLVDSGNFPHLLVYGPSGSGKRTRIMCLLRELY 70
Query: 61 G 61
G
Sbjct: 71 G 71
>gi|340383712|ref|XP_003390360.1| PREDICTED: replication factor C subunit 3-like [Amphimedon
queenslandica]
Length = 312
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/223 (53%), Positives = 169/223 (75%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
++L E D LT++AQ ALRRTME Y TC LIL NS S++IPAI+SRCL +R+PAPT +E
Sbjct: 88 VVLTEVDRLTKDAQHALRRTMELYTGTCHLILVCNSTSKLIPAIKSRCLAVRVPAPTIDE 147
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
I SVL +C KE LTIP A ++A++S+R+LR+AIL+CE +VQQYPF DQ + + +W
Sbjct: 148 ICSVLQYVCHKESLTIPDTLAKKIAEKSERSLRKAILLCEVCRVQQYPFNDDQVVPDCEW 207
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS 243
++++R+TA +II+EQSPK+LLEVR R YELL H IP +++FK +L L+ANCD LK++
Sbjct: 208 EVFLRETAAMIITEQSPKRLLEVRGRYYELLTHCIPPDIIFKRILNELVANCDGTLKAEV 267
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
E+AA ++ + GSK IFH+EA+ A FM +Y QF+E+ L ++
Sbjct: 268 TELAAQYQAQSQLGSKAIFHLEAFTAKFMRIYKQFLEEGLESM 310
>gi|426375155|ref|XP_004054411.1| PREDICTED: replication factor C subunit 3 isoform 2 [Gorilla
gorilla gorilla]
Length = 315
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 138/296 (46%), Positives = 180/296 (60%), Gaps = 68/296 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K L
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACL 296
>gi|108773789|ref|NP_853536.2| replication factor C subunit 3 isoform 2 [Homo sapiens]
Length = 305
Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 138/297 (46%), Positives = 180/297 (60%), Gaps = 68/297 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE 229
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K E
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKE 297
>gi|194383204|dbj|BAG59158.1| unnamed protein product [Homo sapiens]
Length = 305
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 179/293 (61%), Gaps = 68/293 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRLMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK 225
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMK 293
>gi|15241031|ref|NP_198126.1| replication factor C subunit 3/5 [Arabidopsis thaliana]
gi|18389268|gb|AAL67077.1| putative replication factor C [Arabidopsis thaliana]
gi|20259637|gb|AAM14175.1| putative replication factor C [Arabidopsis thaliana]
gi|332006337|gb|AED93720.1| replication factor C subunit 3/5 [Arabidopsis thaliana]
Length = 354
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/353 (42%), Positives = 195/353 (55%), Gaps = 71/353 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YG- 42
LWVDKYRP +L K+ H A L+ L+ E D PHLLF YG
Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGA 61
Query: 43 -------------------------------------PSGAGKKTR--IMALLKELYG-- 61
PS AG + R + ++KE+
Sbjct: 62 SAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 62 ----------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
V++LNE D L+REAQ +LRRTMEKY ++CRLILC NS S+V AI+SRC
Sbjct: 122 PIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRC 181
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
L +RI AP+ EEIV VL + KKE L +P FA R+A++S+R+LRRAIL E +VQ YP
Sbjct: 182 LNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYP 241
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
F +Q I DW+ Y+ + A ++ EQSPKKL +VR ++YELLV+ IP V+ K LL L
Sbjct: 242 FTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHEL 301
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
L DS+LK + AA +EHR+ G K IFHIEA+VA FM++Y F+ T
Sbjct: 302 LKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354
>gi|297812933|ref|XP_002874350.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
gi|297320187|gb|EFH50609.1| nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 359
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/358 (41%), Positives = 197/358 (55%), Gaps = 76/358 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YG- 42
LWVDKYRP +L K+ H A +L+ L+ E D PHLLF YG
Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLKQIYGA 61
Query: 43 -------------------------------------PSGAGKKTR--IMALLKELYG-- 61
PS AG + R + ++KE+
Sbjct: 62 SAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
Query: 62 ----------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
V++LNE D L+REAQ +LRRTMEKY ++CRLILC NS S+V AI+SRC
Sbjct: 122 PIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRC 181
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
L +RI AP+ EEIV VL + KKE L +P FA R+A++S+R+LRRAIL E +VQ YP
Sbjct: 182 LNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYP 241
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKY----- 226
F +Q I DW+ Y+ + A ++ EQSPKKL +VR ++YELLV+ IP V+ K+
Sbjct: 242 FTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKFMLSQR 301
Query: 227 LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
LL LL DS+LK + AA +EHR+ G K IFHIEA+VA FM++Y F+ T
Sbjct: 302 LLHELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 359
>gi|323456769|gb|EGB12635.1| hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens]
Length = 353
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 189/347 (54%), Gaps = 70/347 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YG- 42
LWVDK+RP L K+ +H + + L L +GD PHLLF YG
Sbjct: 2 LWVDKHRPLELGKMSYHGELSERLATLAADGDIPHLLFYGPSGAGKKTRIMALLRALYGA 61
Query: 43 ----------------------------------PSGAGKKTR--IMALLKELYGP---- 62
PS AG R + ++KE+
Sbjct: 62 GAEKQRLEHRDFKTPTNKAIEVTTVASNYHIEINPSDAGNNDRYVVQEVIKEIAQSGSLH 121
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LTR+AQ LRRTMEK ++CRLILC N+ S+VI +RSRCL
Sbjct: 122 KGDKGRVGYKVVLLVEVDRLTRQAQAGLRRTMEKCTSSCRLILCCNNPSKVIDPLRSRCL 181
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ APT EIV+VL ++ +E L +PP A R+A+ S RNLRRAIL E KVQQYPF
Sbjct: 182 GIRVAAPTEAEIVAVLDDVAARERLDLPPALAARIAKASKRNLRRAILSLEECKVQQYPF 241
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
Q + PDW+ Y+ A I EQSP++LL R +LYELL IP +V+ K L LL
Sbjct: 242 DAAQAVPLPDWEQYVVAIASDIAREQSPQRLLATRDKLYELLSKCIPADVILKTLARELL 301
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
N D ++K++ ++ AA +EHRI +G+K IFH+EA+VA FM +Y +FM
Sbjct: 302 KNLDDEMKAEVLKWAAFYEHRITQGNKEIFHLEAFVAKFMCLYKKFM 348
>gi|225713906|gb|ACO12799.1| Replication factor C subunit 3 [Lepeophtheirus salmonis]
Length = 296
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/297 (46%), Positives = 180/297 (60%), Gaps = 72/297 (24%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRPN L KLDF KQA +L L+K DFPHLL Y
Sbjct: 1 MSLWVDKYRPNKLNKLDFGLKQAAYLETLVKSEDFPHLLIHGPSGAGKKTRIVALLRELY 60
Query: 42 GP-------------SGAGKKTRIM------------------------------ALLKE 58
GP + + KK IM A ++
Sbjct: 61 GPGVERLRIEHQNFETPSKKKLEIMTIASNYHIELNPSDVGIYDRVVIQELIKNTASAQQ 120
Query: 59 LYG-------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
++G V++LNE D LT++AQ ALRRTMEKY +TCRLILC+NS S++IPAI+SRC
Sbjct: 121 IHGDSQRASFKVVLLNEVDKLTKDAQHALRRTMEKYTSTCRLILCSNSTSKIIPAIKSRC 180
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
L IRIPAP+ ++I+ +L + KKEG +P E A R+ ++S+RNLRRA+L+ EA KV+QYP
Sbjct: 181 LSIRIPAPSADDIIQILVTVSKKEGCLLPMELARRITEKSNRNLRRALLLTEACKVKQYP 240
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
F Q IV+ DW++Y++DTA++I+SEQ+PKKLLEVR RLYELLV V +L K+LL
Sbjct: 241 FVDGQDIVDLDWEVYLKDTARMIVSEQTPKKLLEVRGRLYELLV---IVFLLMKFLL 294
>gi|167533047|ref|XP_001748204.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773324|gb|EDQ86965.1| predicted protein [Monosiga brevicollis MX1]
Length = 355
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 196/349 (56%), Gaps = 71/349 (20%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YG 42
+WVDK+RP +L +LDFH + HL+ L GD PH+LF YG
Sbjct: 3 GMWVDKHRPKSLDQLDFHANLSQHLKMLSASGDVPHMLFHGPSGAGKKTRCMAFLRELYG 62
Query: 43 PS-------------------------------------GAGKKTRIMALLKEL------ 59
PS G + +LKE+
Sbjct: 63 PSADRLKIDHQVIKPTPSKTVEISTLSSNFHIEINPSDVGIDDYHVVRMILKEIARTPLV 122
Query: 60 ------YGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
+ V+I+ E D LTR++QQALRR ME Y++ CR IL NS ++++ IRSRCL
Sbjct: 123 DTSKHPFKTVVIV-EADRLTRKSQQALRRIMESYVSNCRYILICNSSTKILAPIRSRCLQ 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK--VQQYP 171
+R+ APT E+ +VL + KKE +T+P E ++ ++S RNLRRA+LM EAS+ +Q
Sbjct: 182 MRVGAPTMSEMCAVLHGVAKKEAVTVPDELCQQIVKESRRNLRRALLMLEASRAQIQATS 241
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
+D IV DW++Y+R+TA+ I++EQS +LLEVR R YELL H IP +++ K L+E L
Sbjct: 242 LPVDLPIVRADWEVYLRETAERIVTEQSAARLLEVRGRFYELLTHCIPADLILKTLMEEL 301
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFME 280
+ + D+DLK + +++AA +EHR+ G K IFH+EA+ A FMA+Y F++
Sbjct: 302 VRHLDTDLKVQIVQLAAEYEHRLQSGRKEIFHLEAFTAKFMALYKGFLD 350
>gi|168028662|ref|XP_001766846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681825|gb|EDQ68248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 160/222 (72%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LNE D L++EAQ +LRRTMEKY CRL+LC NS S+VI A+RSRC+ IRI +P+ +
Sbjct: 133 VLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSRCVNIRINSPSRD 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+IV VL + KKE L +PPE A R+A S+RNLRR+IL EA K +QYPF DQ++ D
Sbjct: 193 DIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEVQTTD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ +I A I++EQSPKKL +VR +LYELLV+ IP V+ K LL+ L+ DS+LK +
Sbjct: 253 WEQFIVGLANDIVTEQSPKKLFQVREKLYELLVNCIPPEVILKRLLDELMKKLDSELKHE 312
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
AA +EHR+ +G K IFH+EA+VA FM++Y +F+ +T
Sbjct: 313 VCHWAAFYEHRMQQGQKAIFHLEAFVAKFMSIYKKFLINTFG 354
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L K+ H ++A +L+NL+ +GD PHLLFYGPSGAGKKT IMALL+E++G
Sbjct: 2 LWVDKYRPRTLDKVMVHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFG 60
>gi|348667977|gb|EGZ07802.1| hypothetical protein PHYSODRAFT_340838 [Phytophthora sojae]
Length = 352
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 186/348 (53%), Gaps = 69/348 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYG- 42
LWVDKYRP +L +LDFH + L NL + D PHLL YG
Sbjct: 2 LWVDKYRPTSLGELDFHPEVTKRLTNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGD 61
Query: 43 -----------------------------------PSGAGKKTRIMA--LLKELYG---- 61
PS G R++ +LKE+
Sbjct: 62 GALKVRLEHKAFKAPHRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQKVLKEIAQYHMA 121
Query: 62 --------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
V++L E D L++ AQ ALRRTMEKY TCRL+LC N+ S+VI +RSRCL
Sbjct: 122 DTNSQRPFKVVLLMEVDRLSKGAQHALRRTMEKYTATCRLVLCCNNPSKVIDPLRSRCLG 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
+R+ APT +EI VL +C KEGL +A +S+RNLRRA+LM E +VQ YPF
Sbjct: 182 VRVGAPTTDEICGVLQGVCSKEGLAYCAPLGQEIAVKSERNLRRALLMLETCRVQNYPFS 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
DQQI P W+ YI +K+++ EQSP LL+ R +YEL+ + +P V+ K L L++
Sbjct: 242 PDQQIQLPAWEEYICSLSKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMS 301
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
D DLK + ++ A+ +EHR+ +GSK IFH EA++A FM +Y +F+ D
Sbjct: 302 RLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLD 349
>gi|307106826|gb|EFN55071.1| hypothetical protein CHLNCDRAFT_35851 [Chlorella variabilis]
Length = 354
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 189/348 (54%), Gaps = 71/348 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
L+VDKYRP L++ H A++LR L+ GD PH LF YGP
Sbjct: 2 LYVDKYRPKALEQFQLHSDVADNLRKLVVNGDCPHTLFYGPPGAGKKTLILALLREIYGP 61
Query: 44 --------------------------------------SGAGKKTR--IMALLKELYGP- 62
S G + R + ++KE+
Sbjct: 62 GVEKLKVECKPWKIKLPSSSIDLEFTTISSAYHVEMNPSDVGNRDRYVVQEIIKEMAKSR 121
Query: 63 -----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
V++LNE D L++EAQ +LRRTMEKY CRL+LC N++S+VI +RSRC
Sbjct: 122 PIGTDGQRSFKVLVLNEVDQLSKEAQHSLRRTMEKYSAACRLVLCGNNVSKVIDPVRSRC 181
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
LCIR+ AP+ ++ + + E LT+P A RLA S+RNLRRA+L EA KV QYP
Sbjct: 182 LCIRVAAPSLAQVEEQVQAVAAHERLTLPVPLAKRLAAASERNLRRALLSLEACKVAQYP 241
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
F DQ++ PDW++YIR+ A ++ EQ+PK+L R +LYELL + IP V+ + L L
Sbjct: 242 FAEDQEVAAPDWELYIREIAADVMLEQTPKRLFLARGKLYELLTNCIPPEVVLRRLAVEL 301
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ D +L+ + E AAM+EHR+ +G K IFH+EA++A FM+ Y Q++
Sbjct: 302 MRKLDDELRHSTAEDAAMYEHRLQEGQKAIFHLEAFLARFMSNYKQYI 349
>gi|301092501|ref|XP_002997106.1| replication factor C subunit 3 [Phytophthora infestans T30-4]
gi|262111642|gb|EEY69694.1| replication factor C subunit 3 [Phytophthora infestans T30-4]
Length = 352
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 187/346 (54%), Gaps = 69/346 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYG- 42
LWVDKYRP +L LDFH + L NL + D PHLL YG
Sbjct: 2 LWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGD 61
Query: 43 -----------------------------------PSGAGKKTRIMA--LLKEL------ 59
PS G R++ +LKE+
Sbjct: 62 GALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQYHLA 121
Query: 60 ----YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
+ P V++L E D L++ AQ ALRRTMEKY TCRLILC N+ S+VI +RSRCL
Sbjct: 122 DTNAHRPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLG 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
+R+ APT ++I ++L +C KEGL +A +S+RNLRRA+LM E +VQ YPF
Sbjct: 182 VRVGAPTTDDICTILQGVCSKEGLDYCAPLGKEIALKSERNLRRALLMLETCRVQNYPFS 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
DQQI P W+ YI AK+++ EQSP LL+ R +YEL+ + +P V+ K L L++
Sbjct: 242 PDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMS 301
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D DLK + ++ A+ +EHR+ +GSK IFH EA++A FM +Y +F+
Sbjct: 302 RLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFL 347
>gi|325182836|emb|CCA17291.1| replication factor C subunit 3 putative [Albugo laibachii Nc14]
Length = 352
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 189/348 (54%), Gaps = 69/348 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYG- 42
LWVDK RP+ L L +H + L+NL DFPHLL YG
Sbjct: 2 LWVDKCRPDELDALTYHPQITRRLQNLSSSDDFPHLLVYGPSGAGKKTRIMALLHAMYGK 61
Query: 43 -----------------------------------PSGAGKKTRIMA--LLKELYG---- 61
PS A + R++ +LKE+
Sbjct: 62 GVRKQRLEHKSFKIPDRSVKIEITTVASNYHIEMNPSDADNQDRLIVQEVLKEIAQYHLA 121
Query: 62 --------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
V++L E D L++ AQ ALRRTMEKY TCRLILC NS S++I +RSRCL
Sbjct: 122 DTKAKKPFKVVLLMEVDRLSKHAQHALRRTMEKYTATCRLILCCNSSSKIIEPLRSRCLG 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
I + APT+ EI +VL ++CK EG++ P ++AQQSDRNLRRA+L+ E VQ+YPF
Sbjct: 182 ICVSAPTNREICNVLESVCKNEGISYLPSLGEKIAQQSDRNLRRALLILETCHVQRYPFA 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
DQ+I P W+ YI +K+++ EQSP L++ R +YELL + IP ++ K L L+
Sbjct: 242 EDQEIQLPAWEEYICTLSKVVLQEQSPAGLMKAREMVYELLANCIPSEIILKVLCRELMI 301
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
D DLK + ++ AA +EHR+ +G+K IFH EA++A FM +Y +F+ D
Sbjct: 302 RLDDDLKHELLQWAAFYEHRMQRGAKDIFHFEAFIAKFMTLYKKFLLD 349
>gi|326488121|dbj|BAJ89899.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 354
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/257 (49%), Positives = 167/257 (64%), Gaps = 14/257 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LRR
Sbjct: 93 HHVEMNPSDAGFQDRYVVQEVIKEMAKSRPIDAKGKRAFKVLVLNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY +CRLILC NS S+V A+RSRCL +R+ APT ++IV VL I KKE L +P
Sbjct: 153 TMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPTEDQIVQVLEFIGKKENLQLPFG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I+SEQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFSANQVAPPLDWEQYVSEIATEILSEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR + YELLV+ IP + K LL L+ DSDLK + AA +EH++ GSK IF
Sbjct: 273 LYSVRQKFYELLVNCIPPESILKKLLTELMKKLDSDLKHEVCHWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFM 279
H+EA+VA FM++Y +F+
Sbjct: 333 HLEAFVAKFMSIYKEFL 349
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDK+RP L K+ H + A +L+ + E D PHLLFYGP G+GKKT IMAL+K+++G
Sbjct: 2 LWVDKHRPKTLDKVIVHEQVAQNLKKFVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFGA 61
Query: 63 VI 64
+
Sbjct: 62 GV 63
>gi|320162792|gb|EFW39691.1| replication factor C subunit [Capsaspora owczarzaki ATCC 30864]
Length = 356
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/250 (49%), Positives = 169/250 (67%), Gaps = 20/250 (8%)
Query: 43 PSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS AG + R++ +LKE+ V++L E D L+++AQ ALRRTME Y+
Sbjct: 107 PSDAGTQDRLVVQDILKEIASSHQLDTQTQRSFKVVVLTEVDKLSKDAQHALRRTMELYV 166
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
+TCRLIL NS S+V+ IRSRCL IRIPAPT E +I +KEG+++ +FA R+A
Sbjct: 167 STCRLILLCNSTSKVLSPIRSRCLGIRIPAPTVPE------SIARKEGISVSGDFATRIA 220
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
+ SDRNLR+AIL EA +VQQYPF +Q I + DW++Y+ TA I+ EQSPK LL VR
Sbjct: 221 ESSDRNLRKAILSFEACRVQQYPFVSNQPIQKADWEVYVEQTASEILGEQSPKCLLAVRG 280
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
R+YELL H IP +++ K L LL + D LK + ++ AA +EHR+ GSKPIFH+EA+V
Sbjct: 281 RMYELLSHCIPADIIIKSLTNVLLRSIDRSLKIELVQWAATYEHRLQLGSKPIFHLEAFV 340
Query: 269 ASFMAMYLQF 278
A FM++Y ++
Sbjct: 341 AKFMSLYKRY 350
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 55/73 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LWVDKYRP NL KLD++ + L++L+ GDFPH++ YGP GAGKKTR+M LL+ELY
Sbjct: 1 MALWVDKYRPTNLDKLDYNLTLSKQLKHLVSAGDFPHMMVYGPPGAGKKTRVMCLLRELY 60
Query: 61 GPVIILNETDHLT 73
GP + + +H T
Sbjct: 61 GPGVEKLKVEHRT 73
>gi|298714917|emb|CBJ27673.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 156/217 (71%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L D LT++AQ LRRTME+Y ++CRLIL +S S+VI +RSRCL +R+PAP+
Sbjct: 140 VVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPSES 199
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+ SVLT++C+KE LT+PP A R+A+ S RNLRRA+LM EA +VQQYPF DQ++ D
Sbjct: 200 EVCSVLTSVCRKESLTLPPALAARVAKVSKRNLRRAVLMIEACRVQQYPFSEDQEVQMTD 259
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ YI A+ ++ EQSP++LLE R +LYELL + IP +++ K L L+ N D L +
Sbjct: 260 WENYITQLAREVVLEQSPRRLLEAREKLYELLTNCIPADIILKTLTRELVKNLDCKLWGE 319
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ AA +EHR+H GSK I H+EA+VA FM++Y ++
Sbjct: 320 VFKWAAFYEHRLHMGSKEILHLEAFVAKFMSIYKAYI 356
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDK+RP +L LD H + L + ++G+ PHLLFYGP+G+GKKTR++ALLK +YGP
Sbjct: 2 LWVDKHRPKSLDSLDVHPELTTRLAAMSEDGEIPHLLFYGPAGSGKKTRVLALLKRIYGP 61
>gi|413932847|gb|AFW67398.1| hypothetical protein ZEAMMB73_776055 [Zea mays]
Length = 354
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 170/262 (64%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LRR
Sbjct: 93 HHVEMNPSDAGFQDRYVVQEIIKEMAKNRPIDAKGRRAFKVLVLNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY ++CRLILC NS S+V A+RSRCL +R+ AP+ ++IV VL I KKE L +P
Sbjct: 153 TMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIGKKENLILPAG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I++EQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIATDILTEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L +VR + YELLV+ IP + K LL LL D+DLK + AA +EH++ GSK IF
Sbjct: 273 LFDVRQKFYELLVNCIPPESILKKLLAELLRKLDADLKYEICRWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA+VA FM++Y +F+ T
Sbjct: 333 HLEAFVAKFMSIYKEFLVATFG 354
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L K+ H + A +LR + E D PHLLFYGPSG+GKKT I+AL+K+++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVARNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
>gi|357112071|ref|XP_003557833.1| PREDICTED: replication factor C subunit 3-like [Brachypodium
distachyon]
Length = 354
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 168/262 (64%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V+ILNE D L+REAQ +LRR
Sbjct: 93 HHVEMNPSDAGFQDRYVVQEVIKEMAKSRPIDAKGKRAFKVLILNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY +CRLILC NS S+V A+RSRCL +R+ APT ++IV VL I KKE L +P
Sbjct: 153 TMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPTEDQIVQVLEFIGKKENLQLPFG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I+SEQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVPPPLDWEKYVSEIATDILSEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR + YELLV+ IP + K LL L+ DSDLK + AA +EH++ GSK IF
Sbjct: 273 LYSVRQKFYELLVNCIPPESILKKLLSELMKKLDSDLKHEICHWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA+VA FM++Y +F+ T
Sbjct: 333 HLEAFVAKFMSIYKEFLVATFG 354
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDK+RP L K+ H + A +L+ L+ E D PHLLFYGP G+GKKT IMAL+K+++G
Sbjct: 2 LWVDKHRPKALDKVTVHEQVAQNLKKLVAEQDCPHLLFYGPPGSGKKTLIMALIKQMFG 60
>gi|359806894|ref|NP_001241064.1| uncharacterized protein LOC100818329 [Glycine max]
gi|255645652|gb|ACU23320.1| unknown [Glycine max]
Length = 354
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 155/222 (69%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LN+ D L+REAQ +LRRTMEKY CRLILC NS S+V AIRSRCL +RI AP+ E
Sbjct: 133 VLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+IV VL I KKEGL +PP FA R+ ++S+RNLRRAIL E +VQQYPF Q I D
Sbjct: 193 QIVEVLEFIGKKEGLQLPPGFAARIVEKSNRNLRRAILSFETCRVQQYPFTNKQTIPPMD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ YI + A I+ EQSPK+L +VR +LYELL++ IP ++ K LL LL D++LK +
Sbjct: 253 WEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHE 312
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
AA +E+R+ G K IFHIEA+VA FM++Y F+ T
Sbjct: 313 VCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLISTFG 354
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L ++ H A +L+ L+ E D PHLLFYGPSG+GKKT IMALL++++GP
Sbjct: 2 LWVDKYRPKTLDQVMVHTDIARNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGP 61
Query: 63 VIILNETDHLTREAQQALRRTMEKYITT 90
+ D+ T + A R+++ +TT
Sbjct: 62 GAEKVKVDNRTWKV-DAGSRSLDLELTT 88
>gi|388499612|gb|AFK37872.1| unknown [Lotus japonicus]
Length = 354
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/262 (49%), Positives = 169/262 (64%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LN+ D L+REAQ +LRR
Sbjct: 93 HHIEMSPSDAGFQDRYVVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY CRLILC NS S+V AIRSRCL IRI AP+ E+IV V+ I KKEGL IP
Sbjct: 153 TMEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A++S+RNLRRAIL E +VQQYPF Q I DW+ YI + A I+ EQ+PK+
Sbjct: 213 FAARIAEKSNRNLRRAILSFETCRVQQYPFTNRQTIPPMDWEEYISEIASDIMKEQNPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L +VR +LYELL++ IP ++ K LL LL D++LK + AA +EHR+ G K IF
Sbjct: 273 LFQVRGKLYELLINCIPPEMILKRLLFELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
HIEA+VA FM++Y F+ T
Sbjct: 333 HIEAFVAKFMSVYKSFLIATFG 354
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L ++ H A +L+ L+ E D PHLLFYGPSG+GKKT IMALL++++G
Sbjct: 2 LWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG 60
>gi|449453820|ref|XP_004144654.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]
gi|449521275|ref|XP_004167655.1| PREDICTED: replication factor C subunit 3-like [Cucumis sativus]
Length = 354
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 167/256 (65%), Gaps = 14/256 (5%)
Query: 43 PSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRRTMEKYI 88
PS AG + R + ++KE+ V++LN+ D L+REAQ +LRRTMEKY
Sbjct: 99 PSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYS 158
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
+ CRLILC NS S+V AIRSRCL +RI PT E+I VL I KKEGL +P FA R+A
Sbjct: 159 SYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIA 218
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
++S+R+LRRAIL E +VQQYPF +Q I DW+ YI + A I+ EQSPK+L +VR
Sbjct: 219 EKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRG 278
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+LYELLV+ IP ++ K LL LL D++LK + AA +EHR+ G K IFHIEA+V
Sbjct: 279 KLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFV 338
Query: 269 ASFMAMYLQFMEDTLS 284
A FM++Y F+ T
Sbjct: 339 AKFMSIYKTFLISTFG 354
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L ++ H A +L+ L+ E D PHLLFYGPSG+GKKT +MAL+++++GP
Sbjct: 2 LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
>gi|212721694|ref|NP_001131961.1| uncharacterized protein LOC100193357 [Zea mays]
gi|194693044|gb|ACF80606.1| unknown [Zea mays]
gi|414873276|tpg|DAA51833.1| TPA: replication factor C subunit 5 [Zea mays]
Length = 354
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 169/262 (64%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LRR
Sbjct: 93 HHVEMTPSDAGFQDRYVVQEVIKEMAKNRPIDAKGKRAFKVLVLNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY ++CRLILC NS S+V A+RSRCL +R+ AP+ ++IV VL I KKE L +P
Sbjct: 153 TMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIGKKENLHLPAG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I++EQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIATDILTEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR + YELLV+ IP + K LL LL D+DLK + AA +EH++ GSK IF
Sbjct: 273 LFAVRQKFYELLVNCIPPESILKKLLAELLRKLDADLKHEICHWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA+VA FM++Y +F+ T
Sbjct: 333 HLEAFVAKFMSVYKEFLVATFG 354
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L K+ H + A +LR + E D PHLLFYGPSG+GKKT I+AL+K+++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
>gi|356511754|ref|XP_003524588.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
Length = 354
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 155/222 (69%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LN+ D L+REAQ +LRRTMEKY CRLILC NS S+V AIRSRCL +RI AP+ E
Sbjct: 133 VLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+IV VL I KKEGL +PP FA R+A++S+RNLRRAIL E +V QYPF Q I D
Sbjct: 193 QIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQYPFTNKQAIPPMD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ YI + A I+ EQSPK+L +VR +LYELL++ IP ++ K LL LL D++LK +
Sbjct: 253 WEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHE 312
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
AA +E+R+ G K IFHIEA+VA FM++Y F+ T
Sbjct: 313 VCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG 354
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L ++ H A++L+ L+ E D PHLLFYGPSG+GKKT IMALL++++GP
Sbjct: 2 LWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFGP 61
>gi|195621066|gb|ACG32363.1| replication factor C subunit 5 [Zea mays]
Length = 354
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 169/262 (64%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LRR
Sbjct: 93 HHVEMTPSDAGFQDRYVVQEVIKEMAKNRPIDAKGKRAFKVLVLNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY ++CRLILC NS S+V A+RSRCL +R+ AP+ ++IV VL I KKE L +P
Sbjct: 153 TMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIGKKENLHLPAG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I++EQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIATDILTEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR + YELLV+ IP + K LL LL D+DLK + AA +EH++ GSK IF
Sbjct: 273 LFAVRQKFYELLVNCIPPESILKKLLGELLRKLDADLKHEICHWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA+VA FM++Y +F+ T
Sbjct: 333 HLEAFVAKFMSVYKEFLVATFG 354
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L K+ H + A +LR + E D PHLLFYGPSG+GKKT I+AL+K+++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60
>gi|170584076|ref|XP_001896847.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit)
[Brugia malayi]
gi|158595810|gb|EDP34309.1| Activator 1 38 kDa subunit (Replication factor C 38 kDa subunit),
putative [Brugia malayi]
Length = 354
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 159/213 (74%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ ALRRTMEKY TCRLILC +S+S++I ++SRCL +R+ AP+ +
Sbjct: 131 VVVLVEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLKSRCLAVRVAAPSDD 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
++ + ++CK+E +++P + Q+++ N+RRA+LM EA+KVQ YPF+ +Q+I +P+
Sbjct: 191 DVAKAVRHVCKQENVSVPESIIAAVLQKANGNMRRALLMIEAAKVQNYPFKENQEIPDPE 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+IY+R+TAK++I +Q+P+ LL+VR R YE + H IP NV+F LL LL +C+ +K +
Sbjct: 251 WEIYLRETAKMMIQQQNPENLLKVRNRFYECIGHCIPPNVIFMKLLHELLKSCNDKIKVE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ AA +EHR+ +GSK IFH+E + ASFM +Y
Sbjct: 311 VVAAAADYEHRLTRGSKAIFHLEGFAASFMEIY 343
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 47/61 (77%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LW+DKYRP L L +H KQAN L ++K GDFPHLL YGPSGAGK TRI +L+ELY
Sbjct: 1 MALWIDKYRPRELSALTYHVKQANDLIEIVKAGDFPHLLIYGPSGAGKMTRIFCILRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|328866732|gb|EGG15115.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 352
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 193/345 (55%), Gaps = 71/345 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDKY+P +L +D+H + HL+N++K DFPHLL YGP
Sbjct: 2 LWVDKYKPTSLDHMDYHPDLSLHLKNMIKSSDFPHLLVYGPSGAGKKTRIMAILKEVYGP 61
Query: 44 --------------------------------------SGAGKKTRIMALLKEL------ 59
+G+ + + +++KE+
Sbjct: 62 NCLKLKIDHRTFKHPSTNKNLQVTTISSPYHIEINAGEAGSNDRLIVQSIIKEIAQSPPI 121
Query: 60 ----YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
+G ++ILNE D L+++AQ ALRRTMEKY +CRLILC +S S+VI IRSRCL
Sbjct: 122 DSSVFGAFKIVILNEVDKLSKDAQHALRRTMEKYAASCRLILCCDSTSRVIDPIRSRCLG 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAP+ ++ +VL + KE +P + + +A ++ NLR A+LM EA K +QYPF
Sbjct: 182 IRVPAPSIADVQNVLNIVATKEKFELPKKISEEIAVKAKGNLRYALLMLEAKKAKQYPFV 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
++ DW+ YI+ A+ II EQ+P KL+ VR +LYEL+ H IP ++ K L LL
Sbjct: 242 EGVPLL--DWENYIQVIARDIIMEQTPAKLMAVRAKLYELIGHCIPPELIIKTLTLELLD 299
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ D+ LK ++I AA +EHRI G+KPIFH+EA++A FM+ Y +F
Sbjct: 300 SIDNSLKCETIHWAAFYEHRIQIGTKPIFHLEAFIAKFMSCYKKF 344
>gi|66800141|ref|XP_628996.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74996427|sp|Q54BN3.1|RFC3_DICDI RecName: Full=Probable replication factor C subunit 3; AltName:
Full=Activator 1 subunit 3
gi|60462442|gb|EAL60663.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 188/345 (54%), Gaps = 70/345 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
LW+DKY+P +L K+D+H + +L+N++K GDFPHLL YGP
Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61
Query: 44 --------------------------------------SGAGKKTRIMALLKELYGP--- 62
+G+ + I ++KE+
Sbjct: 62 NALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 121
Query: 63 ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
++ILNE D L+++AQ ALRRTMEKY T CRLILC +S ++VI I+SRCL
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAP+ EEI VL + E +P + A+ +A+QS NLR A+++ E+ K +QYPFQ
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
++ DW+ YI K EQSP +L VR +LYELL H IP ++FK LL +
Sbjct: 242 -STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK 300
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D ++K + I A+ +EHR GSKPIFH+EA++A FM++Y ++
Sbjct: 301 KLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
>gi|388511555|gb|AFK43839.1| unknown [Medicago truncatula]
Length = 354
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 165/256 (64%), Gaps = 14/256 (5%)
Query: 43 PSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRRTMEKYI 88
PS AG + R + ++KE+ V++LN+ D L+REAQ +LRRTMEKY
Sbjct: 99 PSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYS 158
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
CRL+LC NS S+V AIRSRCL +RI AP+ E+IV VL I KKEGL +P A R+A
Sbjct: 159 AYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIA 218
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
++S+RNLRRAIL E +VQQYPF Q I DW+ YI + A I+ EQSPK+L +VR
Sbjct: 219 EKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRG 278
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+LYELL + IP ++ K LL LL D++LK + AA +EHR+ G K IFHIEA+V
Sbjct: 279 KLYELLTNCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFV 338
Query: 269 ASFMAMYLQFMEDTLS 284
A FM++Y F+ T
Sbjct: 339 AKFMSVYKSFLITTFG 354
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 44/60 (73%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L H A +L+ L+ E D PHLLFYGPSGAGKKT IMALL++++GP
Sbjct: 2 LWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGP 61
>gi|402593824|gb|EJW87751.1| hypothetical protein WUBG_01340 [Wuchereria bancrofti]
Length = 354
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 158/213 (74%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +L E D LTR+AQ ALRRTMEKY TCRLILC +S+S++I ++SRCL +R+ AP+ +
Sbjct: 131 VAVLMEADQLTRDAQNALRRTMEKYAQTCRLILCCDSISKIIDPLKSRCLAVRVAAPSDD 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
++ + ++CK+E +++P + Q+++ N+RRA+LM EA+ VQ YPF+ +Q+I +P+
Sbjct: 191 DVAKAVRHVCKQENVSVPESIIAAVVQKANGNMRRALLMIEAATVQNYPFKENQEIPDPE 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TAK+++ +QSP+ LL+VR R YE + H IP N++F LL LL +C+ +K +
Sbjct: 251 WEVYLRETAKMMMQQQSPENLLKVRNRFYECIGHCIPPNIIFMKLLHELLKSCNDKVKVE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ AA +EHR+ +GSKPIFH+E + ASFM +Y
Sbjct: 311 IVAAAAEYEHRLTRGSKPIFHLEGFAASFMEIY 343
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LWVDKYRP L L +H KQA L ++K GDFPHLL YGP+GAGK TRI +L+ELY
Sbjct: 1 MALWVDKYRPRELSALTYHVKQARDLIEIVKAGDFPHLLIYGPNGAGKMTRIFCVLRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|67540260|ref|XP_663904.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Aspergillus nidulans
FGSC A4]
gi|40739494|gb|EAA58684.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Aspergillus nidulans
FGSC A4]
gi|259479486|tpe|CBF69752.1| TPA: DNA replication factor C subunit Rfc5, putative
(AFU_orthologue; AFUA_2G12250) [Aspergillus nidulans
FGSC A4]
Length = 352
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 185/347 (53%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDNRVFQTTSNRKLEFNIVSSVYHLEITPSDVGTYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ E+I ++L+ K+EG PE R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSEEDICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQSEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I PDW+ I A+ I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 SDDTPIPPPDWEALISVIAEEILAERSPARLLQVRARLYDLLTHCIPATTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
A D LK + I+ +A +EHRI +GSK IFH+EA+VA FM +Y ++
Sbjct: 301 AKIDDTLKPEVIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIYESYL 347
>gi|302806064|ref|XP_002984782.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii]
gi|302808301|ref|XP_002985845.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii]
gi|300146352|gb|EFJ13022.1| hypothetical protein SELMODRAFT_234901 [Selaginella moellendorffii]
gi|300147368|gb|EFJ14032.1| hypothetical protein SELMODRAFT_121188 [Selaginella moellendorffii]
Length = 354
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/257 (48%), Positives = 166/257 (64%), Gaps = 14/257 (5%)
Query: 42 GPSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRRTMEKY 87
PS AG + R + ++KE+ V++LNE D L++EAQ +LRRTMEKY
Sbjct: 98 NPSDAGFQDRYVVQEIIKEMAMSRPLDLGVDISFKVLVLNEVDRLSKEAQHSLRRTMEKY 157
Query: 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
CRLILC S S+VI A+RSRCL +RI AP+ +EI VL + KKE + +PP FA R+
Sbjct: 158 SAACRLILCCTSASKVIEAVRSRCLNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRI 217
Query: 148 AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVR 207
A S+RNLRRAIL EA KVQQYPF +Q + DW+ YI + A I++EQSPK+L VR
Sbjct: 218 ALHSNRNLRRAILSLEACKVQQYPFTENQPVQTTDWEQYIVEIASDIVNEQSPKRLFIVR 277
Query: 208 TRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267
+LYELLV+ IP ++ K LL L+ DS+LK + AA EHR+ G K IFH+EA+
Sbjct: 278 GKLYELLVNCIPPEIVLKRLLVELMKKLDSELKHEVCHWAAYHEHRMQLGQKAIFHLEAF 337
Query: 268 VASFMAMYLQFMEDTLS 284
VA FM++Y +F+ T
Sbjct: 338 VAKFMSVYKKFLIATFG 354
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 47/59 (79%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP+ L + H +QA L++L+ EGD PHLLFYGPSGAGKKT IMA L+EL+G
Sbjct: 2 LWVDKYRPHTLDEAIVHQEQAQRLKSLIAEGDCPHLLFYGPSGAGKKTLIMAFLRELFG 60
>gi|294464282|gb|ADE77654.1| unknown [Picea sitchensis]
Length = 354
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 171/262 (65%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L++EAQ +LRR
Sbjct: 93 HHVELNPSDAGFQDRYVVQEIIKEMAKSRPIDVNGTKGFKVLVLNEVDKLSKEAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y CR+ILC +S+S+V+ A+RSRCL IRI +P+ E+IV VL I KKEGL +P
Sbjct: 153 TMEIYSGACRIILCCDSVSKVLEAVRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
F R+AQQS+RNLRRAIL EA KVQQYPF +Q DW+ YI + A I++EQSPK+
Sbjct: 213 FTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDIVNEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR ++YELLV+ IP V+ K LL L+ DS+LK + AA +EHR+ G K IF
Sbjct: 273 LYMVRGKIYELLVNCIPPEVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA++A FM++Y +F+ T
Sbjct: 333 HLEAFIAKFMSIYKKFLIATFG 354
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP +L K+ H + AN+L+NL+ E D PHLLFYGPSGAGKKT IMALLK+++GP
Sbjct: 2 LWVDKYRPRSLDKISVHREIANNLKNLVSEHDCPHLLFYGPSGAGKKTLIMALLKQIFGP 61
>gi|440803530|gb|ELR24424.1| replication factor C (activator 1) 3, putative [Acanthamoeba
castellanii str. Neff]
Length = 303
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 169/252 (67%), Gaps = 14/252 (5%)
Query: 42 GPSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKY 87
PS AG R++ ++KE+ V++LNE + L++EAQ ALRRTMEKY
Sbjct: 44 NPSDAGYHDRLVVQEVIKEIAQSPPLDTTNKPPFKVVVLNEVERLSKEAQHALRRTMEKY 103
Query: 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
++ CRLILC NS S+VI +RSRCL IR+ AP+ +E+ L I KKEG+T+PPE A +
Sbjct: 104 MSVCRLILCCNSTSKVIDPVRSRCLMIRVAAPSLDEVTKSLQAISKKEGITLPPELARSI 163
Query: 148 AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVR 207
A QSDRNLR+AILM +A+ +YPF+ Q++ DW+ +I A+ II EQSPK+L++VR
Sbjct: 164 AVQSDRNLRKAILMLQATHTAKYPFEKGQRVEMTDWEEFIVRLAQFIIDEQSPKRLMDVR 223
Query: 208 TRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267
+LYELL H IP V+ K L LL D+ +K + I AA +EHR+ GSK IFH+EA+
Sbjct: 224 NQLYELLSHCIPPEVIIKKLALELLKKLDTSVKYEVIRWAAFYEHRMQMGSKAIFHLEAF 283
Query: 268 VASFMAMYLQFM 279
VA FM++Y +F+
Sbjct: 284 VAKFMSIYKRFL 295
>gi|26335097|dbj|BAC31249.1| unnamed protein product [Mus musculus]
Length = 270
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/270 (45%), Positives = 163/270 (60%), Gaps = 68/270 (25%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I SVL+ +C+KEGL +P A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
DQ+I E DW++Y+R+TA I+S+Q+P++
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQR 270
>gi|148673951|gb|EDL05898.1| mCG17786, isoform CRA_b [Mus musculus]
Length = 289
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/270 (45%), Positives = 163/270 (60%), Gaps = 68/270 (25%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 20 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 79
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 80 GIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 139
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 140 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 199
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I SVL+ +C+KEGL +P A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 200 AVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPF 259
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
DQ+I E DW++Y+R+TA I+S+Q+P++
Sbjct: 260 TEDQEIPETDWEVYLRETANAIVSQQTPQR 289
>gi|312066686|ref|XP_003136388.1| activator 1 38 kDa subunit [Loa loa]
gi|307768452|gb|EFO27686.1| activator 1 38 kDa subunit [Loa loa]
Length = 354
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 159/213 (74%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +L E D LTR+AQ ALRRTMEKY +CRLILC +S+S++I ++SRCL +R+ AP+ +
Sbjct: 131 VAVLMEADQLTRDAQNALRRTMEKYAQSCRLILCCDSISKIIDPLKSRCLAVRVAAPSDD 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
++ + +CK+E +++P + Q+++ N+RRA+LM EA+KVQ YPF+ +Q+I +P+
Sbjct: 191 DVAKAVRFVCKQENVSVPDSIVDAVVQKANGNMRRALLMIEAAKVQNYPFKENQEIPDPE 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TAK++I +Q+P+ LL++R R YE + H IP N++F LL+ LL +CD+ +K +
Sbjct: 251 WEVYLRETAKMMIQQQNPENLLKIRNRFYECIGHCIPPNIIFMKLLQELLKSCDNKIKVE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ AA +EHR+ +G+K IFH+E + ASFM +Y
Sbjct: 311 VVAAAAEYEHRLIRGNKAIFHLEGFAASFMEIY 343
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LWVDKYRP L L +H KQA L ++K GDFPHLL YGPSGAGK TRI +L+ELY
Sbjct: 1 MALWVDKYRPRELSALTYHVKQARDLIEIVKTGDFPHLLLYGPSGAGKMTRIFCILRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|313226190|emb|CBY21333.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 196/355 (55%), Gaps = 72/355 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLW D+YRP ++LD++ KQA L+ ++KEGDFPHLLF Y
Sbjct: 1 MSLWCDRYRPKTFKELDYNLKQAKQLQRMVKEGDFPHLLFWGTNGAGKKTRINCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
G P+ AG RI+ L+K + G
Sbjct: 61 GSGVDKLRLERHEYTTASNKKLELHACASNYHIEICPADAGIHDRIVIQELVKGIAGGQS 120
Query: 62 ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
VI++ E + LT++AQ LRRTMEKY++TCR+IL + S S++IPA+RSRCL
Sbjct: 121 LNNDKQKQFKVIVITEANRLTKDAQHGLRRTMEKYMSTCRMILLSESTSKLIPALRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ EE+ L C+ E + E R+ + SDRNLR+A+L+ E KV+
Sbjct: 181 GIRVQAPSTEEVKQCLMQACEIERFEMTDEQINRIVKLSDRNLRKALLLGEVCKVKNI-- 238
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ DW+ ++ T K+I+ QSP ++L+VRT LYEL+V IP N++F+ L L
Sbjct: 239 -TNGDPPAYDWEEFLDKTGKMILRNQSPSQILQVRTNLYELIVRLIPANIIFQKLFLQLQ 297
Query: 233 ANC-DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
A C D +K+K + AA FEHR + GSKPI+H+EA+VA FMA Y F+++ + ++
Sbjct: 298 AACPDIHMKTKLAKAAAEFEHRSNLGSKPIYHLEAFVARFMADYKSFLDEFVDDM 352
>gi|326429355|gb|EGD74925.1| replication factor C subunit 3 [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 157/224 (70%), Gaps = 3/224 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++++E D LTR+AQQALRR MEKY+ CR +L NS S+++ IRSRCL +R+ AP+ +
Sbjct: 130 VVVISEADRLTRKAQQALRRIMEKYVHNCRYVLIGNSSSKILAPIRSRCLGLRVGAPSVD 189
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI---DQQIV 179
E+ +VL ++ KKEG + P FA ++A S RNLRRA+LM EA+ Q ++ I
Sbjct: 190 ELSTVLIDVGKKEGCQVMPGFAAKVANASSRNLRRALLMLEATASQSRGSKVMEATNDIQ 249
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL 239
PDW+I++R+TAK IIS+QSP++LLEVR RLYELL H IP +V+ K L E L+ + D L
Sbjct: 250 LPDWEIFLRETAKRIISQQSPQRLLEVRQRLYELLSHCIPPDVIIKRLTEELIGHIDGQL 309
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTL 283
K I AA FEHR+ G KPIFH+EA+VA FM++Y ++ D +
Sbjct: 310 KVDVIAYAADFEHRLTTGRKPIFHLEAFVARFMSVYKAYLMDLM 353
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 41/61 (67%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLW+DKYRP L L +H L+ L GD PHLLFYGP GAGKKTR+ L+ELY
Sbjct: 1 MSLWIDKYRPKQLSALSYHDGITQQLKTLASSGDVPHLLFYGPPGAGKKTRVQCFLRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|115383958|ref|XP_001208526.1| activator 1 38 kDa subunit [Aspergillus terreus NIH2624]
gi|114196218|gb|EAU37918.1| activator 1 38 kDa subunit [Aspergillus terreus NIH2624]
Length = 352
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 184/347 (53%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALLVDKLRPRSLDALSYHHELSERLRSLAQSGDFPHLLMYGPSGAGKKTRTVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +EI +VL+ ++EG T+ P R+AQ+S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEDEICTVLSTAGQREGWTVAPGLNKRIAQESGRNLRRALLMFEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW++ I+ A I++E+SP +LL+ R RLY+LL H IP + K L L+
Sbjct: 241 TDNTPIPPPDWEVVIQMMAHEILAERSPARLLQCRARLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D +LK + I +A +EHR+ +GSK IFH+EA+VA FM +Y ++
Sbjct: 301 QRVDDNLKPEVIRWSAFYEHRVKQGSKVIFHLEAFVAKFMRIYESYL 347
>gi|390594649|gb|EIN04059.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 356
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 184/347 (53%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP L L +H + L++L GDFPH+LF Y
Sbjct: 1 MSLWVDKYRPKALDNLHYHEGLSARLKSLASSGDFPHMLFYGPSGAGKKTRISATLRQLY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGAEKLKIDQRVFMTPSRRRLDLNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 121 VDLNARQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ EE++ VL ++ K EG +PP+ A +A+ ++ NLR+A+L+ EA K+Q
Sbjct: 181 LVRVGAPSEEEMMRVLAHVAKGEGFDLPPDAAAEIARDANGNLRKALLVLEALKMQSPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A +I+ EQSP+++++VR + YELL H IP V+ K + + ++
Sbjct: 241 SGPLSIAKPDWETYCHKVADMIVQEQSPQRVMDVRAKFYELLSHCIPPTVILKTVADRVV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK+ + AA++E R+ G K IFH+EA+V M++Y M
Sbjct: 301 ERVDESLKADIMHWAAIYETRMRLGQKKIFHLEAWVVKVMSLYKHSM 347
>gi|384253748|gb|EIE27222.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 354
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 155/227 (68%)
Query: 49 KTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108
K R + L + V++LNE D L+REAQ +LRRTMEKY TCRLI +++S+VI +R
Sbjct: 119 KNRPLELKGQRGYKVLLLNEVDRLSREAQHSLRRTMEKYSATCRLIFSCSNVSKVIDPLR 178
Query: 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168
SRCLC+R+P PT EI VL ++ +KE + +P R+ Q SDRNLRRA+L E +V
Sbjct: 179 SRCLCVRVPGPTGSEIQHVLQHVAQKENVQLPDALCQRIVQMSDRNLRRALLTLETCRVT 238
Query: 169 QYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
QYPF Q + PDW++YI++ A I+ EQSPK+L EVR +LYELLV+ +P ++ + L
Sbjct: 239 QYPFTEAQSVQLPDWEMYIQEIAAFILQEQSPKRLYEVRGKLYELLVNCLPAELILRTLA 298
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
L D +L+ K+IE+AA +EHR+ +G K I+H+EA+VA FM+ Y
Sbjct: 299 MQLSRKLDDELRHKTIELAAFYEHRLQEGQKAIYHLEAFVAKFMSEY 345
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L L H L+ L+ GD PHLLFYGP GAGKKT I+ LL+E+YG
Sbjct: 2 LWVDKYRPRTLDDLIIHQDIGESLKKLVTTGDCPHLLFYGPPGAGKKTLILGLLREIYGT 61
Query: 63 VI 64
+
Sbjct: 62 AV 63
>gi|302835774|ref|XP_002949448.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
nagariensis]
gi|300265275|gb|EFJ49467.1| DNA replication factor C complex subunit 3 [Volvox carteri f.
nagariensis]
Length = 355
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 156/217 (71%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LNE D L+REAQQ LRRTMEKY + CR+++ N++S+V+ +RSRCLC+R+ APT +
Sbjct: 133 VLVLNEVDRLSREAQQGLRRTMEKYSSACRIVMVCNNISKVMEPVRSRCLCVRVAAPTDD 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+++ VL + KKE LT+PP FA RL + R++RRA+L E KV++YPF DQ+ D
Sbjct: 193 QMMEVLAGVAKKENLTLPPVFAARLVDYASRSMRRALLALEVCKVERYPFGDDQEPNRAD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YI + AK I+ EQSPK+L VR +LYELL +P ++ + L+ LL N D ++K +
Sbjct: 253 WELYIAEVAKNILEEQSPKQLFLVRGKLYELLASCVPPELIIRQLMLELLKNVDDEVKVE 312
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+++ AA+FE R+ +G+K IFH+EA+VA M++ +M
Sbjct: 313 TVQQAAIFEQRLQEGAKAIFHLEAFVAKVMSVVKNYM 349
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP K H + A++L+ L+ GDFPH LFYGP GAGKKT +MALL+ +YGP
Sbjct: 2 LWVDKYRPQTFDKFVIHKQIADNLKKLVAAGDFPHTLFYGPPGAGKKTLVMALLRAIYGP 61
Query: 63 VI 64
+
Sbjct: 62 GV 63
>gi|170096496|ref|XP_001879468.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645836|gb|EDR10083.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 356
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/355 (36%), Positives = 185/355 (52%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVD+YRP L L +H + L++L GDFPH+L +
Sbjct: 1 MSLWVDEYRPRTLDALHYHRGLSERLKSLASSGDFPHMLFYGPSGAGKKTRITCTLRQLF 60
Query: 42 G-----------------------------------PSGAGKKTR--IMALLKELYGP-- 62
G PS AG R I LLKE+
Sbjct: 61 GNGVEKLKIDQRIFLSPSKRKLEINIVQSNFHIEITPSEAGNYDRLVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 121 VDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ EE+++VL + ++ G +PPE +++ N+R+AIL+ EA K+Q
Sbjct: 181 LMRVPAPSPEEMLNVLELVARRAGFDLPPEAGMKIVDDCGGNMRKAILVLEALKMQSPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A LI+SEQSP +++EVR + YELL H IP V+ K + E ++
Sbjct: 241 TGPLTIAKPDWETYCHKVADLIVSEQSPARVMEVRAKFYELLSHCIPPTVILKTVAERVV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
D LK+ + AA +E R+ GSK IFH+EA+ M++Y F D + F
Sbjct: 301 EKVDESLKADVMHWAAFYEVRMRIGSKKIFHLEAWAVKVMSLYKHFFYDIDMSAF 355
>gi|409078462|gb|EKM78825.1| hypothetical protein AGABI1DRAFT_114403 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 355
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 188/346 (54%), Gaps = 69/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP NLQ+L +H + L++L GDFPH+LF Y
Sbjct: 1 MSLWVDKYRPKNLQELHYHHALSKRLKSL-ASGDFPHILFYGPSGAGKKTRIACTLREIY 59
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYGP-- 62
GP S AG R++ +LKE+
Sbjct: 60 GPGAEKLKIDQRIFLSPSRRKLEINLTQSNYHIEITPSEAGNYDRVVIQEILKEIAQTQQ 119
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++++NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 120 VDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL 179
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP +E+ +VL ++ +E +P E A ++ + S+ N+R+A+L+ EA K+Q
Sbjct: 180 LVRVAAPNADEMAAVLNSVAGRENFQLPEEAARQIVEDSNGNMRKALLVMEALKMQSPNL 239
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A LI+SEQSP +++EVR + YELL H IP V+ K + E ++
Sbjct: 240 TGPLTIAKPDWETYCHKVADLIVSEQSPSRIMEVRNKFYELLSHCIPPTVILKTVAERVV 299
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK+ + AA +E R+ G+K I+H+EA+V M++Y QF
Sbjct: 300 ERVDESLKADIMHWAAFYETRMRIGNKKIYHLEAWVVKVMSLYKQF 345
>gi|426199470|gb|EKV49395.1| hypothetical protein AGABI2DRAFT_191437 [Agaricus bisporus var.
bisporus H97]
Length = 355
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 188/346 (54%), Gaps = 69/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP NLQ+L +H + L++L GDFPH+LF Y
Sbjct: 1 MSLWVDKYRPKNLQELHYHHALSKRLKSL-ASGDFPHILFYGPSGAGKKTRIACTLREIY 59
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYGP-- 62
GP S AG R++ +LKE+
Sbjct: 60 GPGAEKLKIDQRIFLSPSRRKLEINLTQSNYHIEITPSEAGNYDRVVIQEILKEIAQTQQ 119
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++++NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 120 VDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL 179
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP +E+ +VL +I +E +P E A ++ + S+ N+R+A+L+ EA K+Q
Sbjct: 180 LVRVAAPNADEMAAVLNSIAGRENFQLPEEAARQIIEDSNGNMRKALLVMEALKMQSPNL 239
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A LI+SEQSP +++EVR + YELL H IP V+ K + E ++
Sbjct: 240 TGPLTIAKPDWETYCHKVADLIVSEQSPSRIMEVRNKFYELLSHCIPPTVILKTVAERVV 299
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK+ + AA +E R+ G+K I+H+EA+V M++Y QF
Sbjct: 300 ERVDESLKADIMHWAAFYETRMRIGNKKIYHLEAWVVKVMSLYKQF 345
>gi|119481309|ref|XP_001260683.1| DNA replication factor C subunit Rfc5, putative [Neosartorya
fischeri NRRL 181]
gi|119408837|gb|EAW18786.1| DNA replication factor C subunit Rfc5, putative [Neosartorya
fischeri NRRL 181]
Length = 355
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 180/343 (52%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GSGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT E+I SVL N K+EG P R+A++SDRNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 TDNTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
A D LK I+ +A +EHRI +GSK IFH+EA+VA FM +Y
Sbjct: 301 ARVDDALKPDVIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIY 343
>gi|225439256|ref|XP_002263213.1| PREDICTED: probable replication factor C subunit 3 [Vitis vinifera]
gi|296089274|emb|CBI39046.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/222 (53%), Positives = 156/222 (70%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LNE D L+REAQ +LRRTMEKY +CRLILC NS S+V A+RSRCL IRI APT E
Sbjct: 133 VLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNIRINAPTEE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL I KKEGL +P FA R+A++S+R+LRRAIL E +VQQYPF +Q + D
Sbjct: 193 QITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQYPFTNNQAMPPMD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ Y+ + A I+ EQSPK+L +VR +LYELL++ IP ++ K LL LL D++LK +
Sbjct: 253 WEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLLELLKKLDAELKHE 312
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
AA +EHR+ G K IFHIEA+VA FM++Y F+ T
Sbjct: 313 VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG 354
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L L H A +L+ L+ E D PHLLFYGP G+GKKT IMA+L++++GP
Sbjct: 2 LWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGP 61
>gi|159129619|gb|EDP54733.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
fumigatus A1163]
Length = 355
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 180/343 (52%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GSGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT E+I SVL N K+EG P R+A++SDRNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 TDNTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
A D LK I+ +A +EHRI +GSK IFH+EA+VA FM +Y
Sbjct: 301 ARVDDALKPDVIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIY 343
>gi|58263060|ref|XP_568940.1| DNA clamp loader [Cryptococcus neoformans var. neoformans JEC21]
gi|134107896|ref|XP_777330.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260020|gb|EAL22683.1| hypothetical protein CNBB1320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223590|gb|AAW41633.1| DNA clamp loader, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 356
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 180/346 (52%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP L L +H ++ L++L GDFPH+LF Y
Sbjct: 1 MSLWVDKYRPRTLDDLHYHDGLSSRLKSLAASGDFPHILFYGPSGAGKKTRIMCTLRELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I +LKE+
Sbjct: 61 GPGVEKLRIDQRVFVTPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D LTR+AQ ALRRTMEKY+T RLILCANS S++I IRSRCL
Sbjct: 121 VDLNAKQRFKVVIINEADALTRDAQAALRRTMEKYMTNMRLILCANSTSKIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +E+ +VL + KKE +P + + S NLR+A+L+ EA ++Q
Sbjct: 181 LMRVAAPTDDEMSTVLNYVAKKERFMLPSSANNAILETSQGNLRKALLVFEAMRMQHPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D ++ +PDW+ Y A I+ EQ+ +KLL++R ++YELL H IP V+ K + E L+
Sbjct: 241 SGDVEVAKPDWETYCGKVADAILQEQTAQKLLDIRAKIYELLSHCIPPTVVMKTISERLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK + + A +E R+ GSK IFHIEA++A M +Y Q+
Sbjct: 301 EKVDDTLKPQIVHWTAYYELRMRMGSKKIFHIEAFIAKVMTVYKQY 346
>gi|449299018|gb|EMC95032.1| hypothetical protein BAUCODRAFT_523426 [Baudoinia compniacensis
UAMH 10762]
Length = 356
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 136/343 (39%), Positives = 174/343 (50%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP L L +H ++ LR+L GDFPHLL Y
Sbjct: 1 MALLVDKHRPRTLDTLTYHTDLSDRLRSLAASGDFPHLLIYGPSGAGKKTRVSATLRALY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGAEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSRCL
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EEI VL + KKEG R+A+ S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEEEIAGVLARVGKKEGYKSCEPLERRIAKDSGRNLRRALLMFEAVHAQNDNV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK +I E+SP ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TEKTPIPPPDWEALIEVIAKEMIEERSPARILQVRAKLYDLLSHCIPATTVLKTLTFKLM 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
D LK+ ++ +A +EHRI GSK IFH+EA+VA FM +Y
Sbjct: 301 PKIDDSLKADIVKWSAFYEHRIRTGSKVIFHLEAFVAKFMRIY 343
>gi|30314657|dbj|BAC76086.1| replication factor C 38 kDa subunit [Oryza sativa Japonica Group]
Length = 354
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 167/262 (63%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LRR
Sbjct: 93 HHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDVKGKRAFKVLVLNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY +CRLILC NS S+V A+RSRCL +R+ AP+ ++IV VL I KKE L +P
Sbjct: 153 TMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIGKKENLQLPFG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I+ EQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIAADIMKEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR + YELLV+ IP + K LL LL DSDLK + AA +EH++ GSK IF
Sbjct: 273 LFAVRQKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA+VA FM++Y +F+ T
Sbjct: 333 HLEAFVAKFMSIYKEFLVSTFG 354
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L K+ H + A +L+ L+ E D PHLLFYGPSG+GKKT +MAL+K+++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60
>gi|85110603|ref|XP_963541.1| activator 1 38 kDa subunit [Neurospora crassa OR74A]
gi|30913260|sp|Q8X082.1|RFC5_NEUCR RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5; AltName: Full=Probable activator 1 subunit 5
gi|18376021|emb|CAB91755.2| probable replication factor C 38K chain [Neurospora crassa]
gi|28925224|gb|EAA34305.1| activator 1 38 kDa subunit [Neurospora crassa OR74A]
Length = 352
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 181/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSRCL
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH+EI VL + KKEG I R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP ++ K L L+
Sbjct: 241 TDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK+ I +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMSMD 351
>gi|115455849|ref|NP_001051525.1| Os03g0792600 [Oryza sativa Japonica Group]
gi|28269436|gb|AAO37979.1| putative replication factor [Oryza sativa Japonica Group]
gi|108711507|gb|ABF99302.1| Activator 1 38 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113549996|dbj|BAF13439.1| Os03g0792600 [Oryza sativa Japonica Group]
gi|125546006|gb|EAY92145.1| hypothetical protein OsI_13856 [Oryza sativa Indica Group]
gi|215737314|dbj|BAG96243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765336|dbj|BAG87033.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625948|gb|EEE60080.1| hypothetical protein OsJ_12910 [Oryza sativa Japonica Group]
Length = 354
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 167/262 (63%), Gaps = 14/262 (5%)
Query: 37 HLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRR 82
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LRR
Sbjct: 93 HHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDAKGKRAFKVLVLNEVDKLSREAQHSLRR 152
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TMEKY +CRLILC NS S+V A+RSRCL +R+ AP+ ++IV VL I KKE L +P
Sbjct: 153 TMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIGKKENLQLPFG 212
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
FA R+A QS+RNLRRAIL E KVQQYPF +Q DW+ Y+ + A I+ EQSPK+
Sbjct: 213 FAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVAPPLDWEQYVSEIAADIMKEQSPKR 272
Query: 203 LLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
L VR + YELLV+ IP + K LL LL DSDLK + AA +EH++ GSK IF
Sbjct: 273 LFAVRQKFYELLVNCIPPESILKKLLAELLKKLDSDLKHEICHWAAHYEHKMRLGSKAIF 332
Query: 263 HIEAYVASFMAMYLQFMEDTLS 284
H+EA+VA FM++Y +F+ T
Sbjct: 333 HLEAFVAKFMSIYKEFLVSTFG 354
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L K+ H + A +L+ L+ E D PHLLFYGPSG+GKKT +MAL+K+++G
Sbjct: 2 LWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60
>gi|169774819|ref|XP_001821877.1| replication factor C subunit 5 [Aspergillus oryzae RIB40]
gi|238496571|ref|XP_002379521.1| DNA replication factor C subunit Rfc5, putative [Aspergillus flavus
NRRL3357]
gi|83769740|dbj|BAE59875.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694401|gb|EED50745.1| DNA replication factor C subunit Rfc5, putative [Aspergillus flavus
NRRL3357]
gi|391868800|gb|EIT78009.1| replication factor C, subunit RFC3 [Aspergillus oryzae 3.042]
Length = 352
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 184/347 (53%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK RP +L+ L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDKLRPRSLEALSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GAGVEKIKIDARVYQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT ++I SVL+ K+EG P ++A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEDQICSVLSAAGKREGWPEAPGLNKKIAKESGRNLRRALLMFEAIYAQSEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW++ I TA I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 TENTPIPPPDWEVLISITADEILAERSPARLLQVRARLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
A D LK I+ +A +EHR+ +GSK IFH+EA+VA FM +Y ++
Sbjct: 301 AKVDDALKPDVIKWSAFYEHRVTQGSKVIFHLEAFVAKFMRIYESYL 347
>gi|255569436|ref|XP_002525685.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223534985|gb|EEF36668.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 149/208 (71%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+++LNE D L+REAQ +LRRTMEKY CRLILC NS S+V AIRSRCL +RI AP+ E
Sbjct: 134 ILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSRCLNVRISAPSEE 193
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+IV VL I KKEGL +P FA R+A++S+R+LRRA+L E +VQQYPF +Q I D
Sbjct: 194 QIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQYPFTSNQPIPPMD 253
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ Y+ + A I+ EQSPKKL +VR +LYELL++ IP +++ K L+ LL D +LK +
Sbjct: 254 WEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVNELLKKLDEELKHE 313
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVAS 270
AA +EHR+ G K IFH+EA+VAS
Sbjct: 314 VSHWAAYYEHRMRLGQKAIFHLEAFVAS 341
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 46/60 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L ++ H A +L+ L+ E D PHLLFYGPSG+GKKT IMALL++++GP
Sbjct: 2 LWVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGP 61
>gi|336468523|gb|EGO56686.1| hypothetical protein NEUTE1DRAFT_65455, partial [Neurospora
tetrasperma FGSC 2508]
gi|350289215|gb|EGZ70440.1| putative replication factor C 38K chain, partial [Neurospora
tetrasperma FGSC 2509]
Length = 353
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 180/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSRCL
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH+EI VL + KKEG I R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP ++ K L L+
Sbjct: 241 TDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK+ I +A +EHRI G+K IFH+EA+VA FM ++ ++
Sbjct: 301 PLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYL 347
>gi|321248728|ref|XP_003191220.1| subunit of DNA Replication factor C (RF-C); Rfc5p [Cryptococcus
gattii WM276]
gi|317457687|gb|ADV19433.1| Subunit of DNA Replication factor C (RF-C), putative; Rfc5p
[Cryptococcus gattii WM276]
Length = 356
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 180/346 (52%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP L L +H ++ L++L GDFPH+LF Y
Sbjct: 1 MSLWVDKYRPRTLDDLHYHDGLSSRLKSLAASGDFPHILFYGPSGAGKKTRIMCTLRELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I +LKE+
Sbjct: 61 GPGVEKLRIDQRVFVTPSNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D LTR+AQ ALRRTMEKY+ RLILCANS S++I IRSRCL
Sbjct: 121 VDLNAKQRFKVVIINEADALTRDAQAALRRTMEKYMANMRLILCANSTSKIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +E+ +VL + KKE T+P + + S NLR+A+L+ EA ++Q+
Sbjct: 181 LMRVAAPTDDEMTTVLNYVAKKERFTLPSPANNAILETSQGNLRKALLVFEAMRMQRPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D ++ +PDW+ Y A I+ EQ+ ++LLE+R ++YELL H IP V+ K + E L+
Sbjct: 241 SGDIEVAKPDWETYCGKVADAILQEQTAQRLLEIRAKIYELLSHCIPPTVVMKTISERLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK + + A +E R+ GSK IFHIEA++ M +Y Q+
Sbjct: 301 EKVDDTLKPQIVHWTAYYELRMRMGSKKIFHIEAFIVKVMTVYKQY 346
>gi|213401579|ref|XP_002171562.1| replication factor C subunit 5 [Schizosaccharomyces japonicus
yFS275]
gi|211999609|gb|EEB05269.1| replication factor C subunit 5 [Schizosaccharomyces japonicus
yFS275]
Length = 358
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 187/357 (52%), Gaps = 73/357 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
LW+D+YRP L LD+H +QA L +L +FPHLL +GP
Sbjct: 2 LWLDQYRPKTLANLDYHTEQAERLTHLAASNEFPHLLIYGPSGAGKKTRVVALLRELFGP 61
Query: 44 -----------------------------------SGAGKKTRIM--ALLKELY--GPV- 63
S G R++ LLK++ PV
Sbjct: 62 GAEKLKIDQRVFLTPSNRKIQVNIVSSLYHLELTPSDVGNYDRVVMQELLKDVAQSAPVD 121
Query: 64 ---------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
+++NE D LTR+AQ ALRRTMEKY RLIL ANS S++I +RSR L I
Sbjct: 122 IQAKKRFKAVVINEADSLTRDAQAALRRTMEKYSDNIRLILIANSTSKIIEPVRSRTLLI 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA----SKVQQY 170
R+ APTH EIVSVLT + +++ L P ++AQ SDRNLR+A+L+ E + +
Sbjct: 182 RVAAPTHTEIVSVLTKVLQQQSLEAAPSLLNKIAQDSDRNLRKALLILETLYAKAPGSRQ 241
Query: 171 PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
I +PDW+ +I A +I+EQSP ++L VR+ LY+LL H IP +++ K L
Sbjct: 242 IMGNTGSIPKPDWQEFIDKVADAMIAEQSPNRILSVRSMLYDLLSHCIPPSIVLKELASA 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY-LQFMEDTLSNL 286
LLA DL + I AA +EHRIH G+K IFH+EA+VA FM +Y + M ++ N+
Sbjct: 302 LLAKVKPDLHAPIISSAANYEHRIHMGNKSIFHLEAFVAFFMKLYAMSLMGMSIENM 358
>gi|358365640|dbj|GAA82262.1| DNA replication factor C subunit Rfc5 [Aspergillus kawachii IFO
4308]
Length = 352
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 179/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDKLRPRSLDALTYHPELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GSGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP EEI +VL N KKEG R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPNEEEICTVLRNAAKKEGWPEASGLNKRIAKESGRNLRRALLMFEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I TA+ I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 TDNTLIPPPDWEALIALTAEEILAERSPARLLQVRARLYDLLTHCIPPTTIIKSLTFNLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK I +A +EHRI +GSK IFH+EA+VA FM +Y ++
Sbjct: 301 TKVDDALKPDVIRWSAFYEHRITQGSKVIFHLEAFVAKFMRIYESYL 347
>gi|342879794|gb|EGU81029.1| hypothetical protein FOXB_08438 [Fusarium oxysporum Fo5176]
Length = 389
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 180/341 (52%), Gaps = 70/341 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L+ L +H + ++ LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLETLTYHNELSDRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI VL KKEG + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICDVLAVSAKKEGWPVVEGLHKRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEP-DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
D ++ P DW+ I AK I+ E SP ++L+VR++LY+LL H IP + K L L
Sbjct: 241 -TDSTVIPPADWEALIGQIAKEILEEHSPARILQVRSKLYDLLTHCIPPTTILKTLAFKL 299
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+A D LK + I+ AA +EHRI G+K IFH+EA+VA FM
Sbjct: 300 IALIDDGLKGEVIQWAAFYEHRIKTGTKVIFHLEAFVAKFM 340
>gi|291001551|ref|XP_002683342.1| predicted protein [Naegleria gruberi]
gi|284096971|gb|EFC50598.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 156/212 (73%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VI+L+E D LTREAQQALRR MEKY +CRLILCANS S++IP IRSRC+ +RIPAP+ E
Sbjct: 138 VIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKIIPPIRSRCMAVRIPAPSDE 197
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI +VL + KKE + + PE ++ ++ D N+RRA+LM E++KV+QYPF DQQ+ P
Sbjct: 198 EISTVLQFVAKKENIKLVPEITQQICEKCDGNMRRALLMLESAKVEQYPFTKDQQVKLPG 257
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ ++ + AK II++Q+P+ LL++R + LL + I +++FK LL LL D + +
Sbjct: 258 WEKFVEEIAKSIIADQTPQTLLKIRDDFFLLLTNCIAPDIIFKTLLLKLLDLLDGEQAHQ 317
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
IE+AA FEHR+ GSKPIFH+EA+VAS M++
Sbjct: 318 VIELAAKFEHRMKCGSKPIFHLEAFVASVMSL 349
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M LW+DK+RP +L+K+ H + + L N+ K GDFPHLL +GPSGAGKKTRI ALL+E+Y
Sbjct: 1 MVLWLDKHRPMSLEKMQIHKEVSEQLMNITKSGDFPHLLIHGPSGAGKKTRIQALLREIY 60
Query: 61 G 61
Sbjct: 61 N 61
>gi|121715792|ref|XP_001275505.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
clavatus NRRL 1]
gi|119403662|gb|EAW14079.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 181/347 (52%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPRSLDALSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT E+I VL N KKEG P R+A++S+RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEEQICEVLENAGKKEGWPEAPGLNQRIAKESERNLRRALLMFEAIYAQTEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 TDNTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ D LK I+ +A +EHRI +GSK IFH+EA+VA FM +Y ++
Sbjct: 301 SKVDDSLKPDVIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIYESYL 347
>gi|310794493|gb|EFQ29954.1| clamp-loader complex subunit E [Glomerella graminicola M1.001]
Length = 352
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 181/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L+ L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPKSLEALTYHQELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHE+I VL KKE + +R+AQ SDRNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEQICDVLAVSAKKENWPMVKGLHMRIAQDSDRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ II E +P ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TDTTPIPPPDWEALISQIAREIIDEHTPSRILQVRAKLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF---MAMYLQFME 280
D LK++ I+ +A +EHRI G+K IFH+EA+VA F M MYL M+
Sbjct: 301 PLIDDALKAEVIKWSAFYEHRIKMGTKVIFHLEAFVAKFMRIMEMYLMSMD 351
>gi|336260375|ref|XP_003344983.1| hypothetical protein SMAC_06760 [Sordaria macrospora k-hell]
gi|380095056|emb|CCC07558.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 352
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHPELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSNNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSRCL
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH+EI VL + KKEG + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHQEICDVLASSAKKEGWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TDTTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATSILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK+ I +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDALKADVIYWSAFYEHRIKTGTKVIFHLEAFVAKFMRIFEMYLMSMD 351
>gi|224146053|ref|XP_002325862.1| predicted protein [Populus trichocarpa]
gi|222862737|gb|EEF00244.1| predicted protein [Populus trichocarpa]
Length = 353
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 153/222 (68%), Gaps = 1/222 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LNE D L+REAQ +LRRTMEKY +CRLILC NS S+V AIRSRCL +RI AP E
Sbjct: 133 VLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNVRINAPKEE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+IV VL I KKEGL +PP FA R+A +S+R+LRRAIL E +VQQYPF +Q I D
Sbjct: 193 QIVKVLEFIGKKEGLQLPPGFAARIADKSNRSLRRAILSFETCRVQQYPFSSNQAIPPMD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ Y+ + I+ EQSPK+L +VR +LYELL++ IP ++ K L E L D +LK +
Sbjct: 253 WEEYVSEICSDIMREQSPKRLFQVRGKLYELLINCIPPEIILKLLSELLKKL-DEELKHE 311
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLS 284
AA +EHR+ G K IFH+EA+VA FM++Y F+ T
Sbjct: 312 VCHWAAYYEHRMRMGQKAIFHLEAFVAKFMSIYKAFLIATFG 353
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L ++ H + A +L+ L+ E D PHLLFYGPSG+GKKT IMALL++++G
Sbjct: 2 LWVDKYRPKTLDQVIVHQEIAENLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG 60
>gi|219112623|ref|XP_002178063.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410948|gb|EEC50877.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 361
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 151/220 (68%), Gaps = 1/220 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++L E D L+R+AQ ALRRTMEKY +TCRLIL N+ S+VI +RSRCL IR+ APT +
Sbjct: 139 TVVLVEVDRLSRQAQAALRRTMEKYASTCRLILVCNNQSKVIEPVRSRCLGIRVAAPTED 198
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQIVEP 181
EI VL ++ E +P E A+ +A++S RN+RRAILM EA VQ+ DQ + +
Sbjct: 199 EICKVLKSVSINESFMLPDELAINIARESSRNVRRAILMLEACYVQKRGALTKDQPVQKT 258
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW++YI A I EQ+P++L+ R +LYELLV+ IP NV+ K L + L+ N D LK
Sbjct: 259 DWELYINQLAVEITREQTPQRLMAAREKLYELLVNCIPANVIIKTLAKELMKNLDDSLKR 318
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
+ IE AA +EHRI GSK IFH+EA+VA FMA+Y +++ D
Sbjct: 319 EVIEWAAFYEHRISLGSKEIFHLEAFVAKFMAVYKKYLND 358
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGD-FPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP L L +H + L +L + PHL FYGP+GAGKKTRI ALL LYG
Sbjct: 2 LWVDKYRPVKLDDLSYHDTISQRLSSLASNPESMPHLFFYGPAGAGKKTRITALLGSLYG 61
Query: 62 P 62
P
Sbjct: 62 P 62
>gi|328772230|gb|EGF82269.1| hypothetical protein BATDEDRAFT_16167 [Batrachochytrium
dendrobatidis JAM81]
Length = 353
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 190/347 (54%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFH-------CKQANH-----------------------LRNLL 30
MSLWVDKYRP +L KL +H C+ AN LR L
Sbjct: 1 MSLWVDKYRPLSLDKLSYHPDTSKLLCQLANSDEFPHLLVYGPSGAGKKTRVTATLRQLF 60
Query: 31 KEG-----------DFP-------------HLLFYGPSGAGKKTRIMA--LLKELYGP-- 62
G + P + + PS G RI+ L+KE+
Sbjct: 61 GPGVEKLKIETRQFETPSNRKLEINIVSSNYHVEITPSDVGIYDRIIVQELIKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++LNE D L+R+AQ LRRTMEKY+ R+ILC N S++I IRSRCL
Sbjct: 121 LDSSAKKQFKVVVLNEADSLSRDAQAGLRRTMEKYMGNMRMILCCNVTSKIISPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ EI +VL N+ K+E + EFA R+A +S+ NLR+A+L+ EA+K QQYPF
Sbjct: 181 LIRVAAPSFTEIQTVLQNVAKEENFKLSSEFAQRIATESEGNLRKALLVLEAAKAQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+Q + + DW+ +I A LI+++Q+ K L+E+RT+LY+LL + IP +V+ K L LL
Sbjct: 241 TNNQVLPKTDWEQHIHQIAHLILNQQNSKALIEIRTKLYQLLSNCIPADVILKTLAFELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ D LK ++ AA +EHR+ G+K IFH+EA+V+ M Y Q++
Sbjct: 301 QSIDGQLKRDIVQFAADYEHRLRLGNKAIFHLEAFVSKCMGTYGQYL 347
>gi|393239720|gb|EJD47250.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 357
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 185/349 (53%), Gaps = 68/349 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +L +H + L++L GDFPH+L +
Sbjct: 1 MSLWVDKYRPRSLDELHYHADLSARLKSLAASGDFPHMLFYGPSGAGKKTRILATLRAIF 60
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYGP-- 62
GP S G R++ +LKE+
Sbjct: 61 GPGVEKVKIDQRVFVTPSKRKLDVNVVQSNFHIELTPSDVGNYDRVVIQEILKEIAATQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++++NE D L+R+AQ ALRRTMEKY++ RL+LC NS S +I I+SRCL
Sbjct: 121 IDLNAKQRFKIVVINEADSLSRDAQAALRRTMEKYMSNMRLVLCTNSTSNLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP EE+ +VL ++ KKE +PP + ++ ++ NLR+A+L+ EA K+Q
Sbjct: 181 LVRVAAPNAEEMQAVLEHVAKKEKFDLPPTASEQIVADANGNLRKALLVLEALKMQSPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I +PDW+ Y A LI+ Q+P++++ VR ++YELL H IP V+ K + E ++
Sbjct: 241 TGDLAIAKPDWEAYCHAVADLIVQRQTPEQVMLVRAKMYELLSHCIPPTVVIKTVAERVV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
D L++ + AA++E R+ GSK IFH+EA+V M++Y FM D
Sbjct: 301 ERVDEALRADVMHWAAVYEMRMRVGSKKIFHLEAWVVKVMSLYKHFMLD 349
>gi|330906014|ref|XP_003295321.1| hypothetical protein PTT_00410 [Pyrenophora teres f. teres 0-1]
gi|311333479|gb|EFQ96578.1| hypothetical protein PTT_00410 [Pyrenophora teres f. teres 0-1]
Length = 356
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 176/346 (50%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP NL+ L +H + ++ LR L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI SVL+ + KKEG R+A+ S RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPTESEICSVLSKVGKKEGWKDVESLNQRIAKDSGRNLRKALLMFEAVHAQNEKI 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ I+ E+SP++LL+VR LY+LL H I + K L L+
Sbjct: 241 TDQTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDSTTIIKTLTWKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK + I+ AA +EHR GSK IFH+EA+VA +M +Y F
Sbjct: 301 PKTDDALKPEVIKWAAFYEHRCKMGSKQIFHLEAFVAKYMRLYESF 346
>gi|367055376|ref|XP_003658066.1| hypothetical protein THITE_2124521 [Thielavia terrestris NRRL 8126]
gi|347005332|gb|AEO71730.1| hypothetical protein THITE_2124521 [Thielavia terrestris NRRL 8126]
Length = 352
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 179/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL +
Sbjct: 1 MALIVDKHRPKSLDALTYHEELSQRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH+EI VL KKEG + R+A++S RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPTHQEICDVLAASAKKEGWPVVKGLHQRIAEESGRNLRKALLMLEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A II E++P ++L+VR++LY+LL H IP + + L L+
Sbjct: 241 TDTTDIPPPDWEALIGQIASDIIQERTPTRILQVRSKLYDLLTHCIPATTILRTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK+ I+ +A FEHRI G+K IFH+EA+VA FM +Y ++
Sbjct: 301 PQIDDALKADVIKWSAFFEHRIKTGTKVIFHLEAFVAKFMRIYEMYL 347
>gi|255082302|ref|XP_002504137.1| predicted protein [Micromonas sp. RCC299]
gi|226519405|gb|ACO65395.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 155/217 (71%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LNE D L++EAQ LRRTMEKY + CRLIL S+S+V+ A+RSRCL +R+ AP+ E
Sbjct: 134 VLLLNEVDRLSKEAQHGLRRTMEKYSSACRLILICTSVSKVLDAVRSRCLPVRVAAPSVE 193
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+ ++ ++ +KE L +PPE A RLA S+RN+RR +L EA +VQQYPF+ DQ + D
Sbjct: 194 TVEKLVMDVAQKEKLVMPPELAARLALHSERNMRRCLLSMEACRVQQYPFKADQPVQLCD 253
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ Y+ A I+ EQ+PK+LL+VR R YEL+V+ IP ++ K L+ L D +LK +
Sbjct: 254 WEAYVTQIANEILQEQTPKRLLQVRGRFYELIVNCIPPELIIKRLVRELNRKLDVELKHE 313
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ AA FEHR+++GSK I H+EA+VA+FMA+Y +++
Sbjct: 314 TARHAAYFEHRMNEGSKAIIHMEAFVANFMAVYKKYL 350
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 3 LWVDKYRPNNLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP+ L ++ + A HL+ L+++GD PHLLFYG GAGKKT +A+L+E++G
Sbjct: 2 LWVDKYRPHTLDQMTTVNTDIAQHLKRLVQDGDCPHLLFYGVGGAGKKTLALAVLREIFG 61
Query: 62 PVIILNETDHLTREAQQALRRTMEKYITT 90
+ + + T + +Q R+ +E +TT
Sbjct: 62 AAVEKVKVEGKTWKLEQGERK-IEVELTT 89
>gi|367035830|ref|XP_003667197.1| hypothetical protein MYCTH_2312770 [Myceliophthora thermophila ATCC
42464]
gi|347014470|gb|AEO61952.1| hypothetical protein MYCTH_2312770 [Myceliophthora thermophila ATCC
42464]
Length = 352
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL +
Sbjct: 1 MALIVDKHRPRSLDALTYHGELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARAFQTSSNRKLEFNIVASVYHLEITPSDVGTYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI VL KKEG + R+A++S RNLR+A+L+ EA Q
Sbjct: 181 LVRVAAPTHEEICDVLAASAKKEGWPVVKGLHQRIAEESGRNLRKALLILEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR++LY+LL H IP + + L L+
Sbjct: 241 TDTTPIPPPDWEALIGQIAKEIMEEHTPARILQVRSKLYDLLTHCIPATTILRTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK+ I+ AA FEHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PMIDDALKADVIKWAAFFEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMSMD 351
>gi|302926981|ref|XP_003054403.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735344|gb|EEU48690.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 352
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 181/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + ++ L++L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDSLTYHHELSSRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTGNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI VL KKEG + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICDVLAVSAKKEGWPVVKGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW+ I AK I+ E +P ++L+VR++LY+LL H IP + K L L+
Sbjct: 241 TDSTPIPPADWEALIGQIAKEILEEHTPARILQVRSKLYDLLTHCIPPTTILKTLAFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
A D LK + I+ AA +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 ALIDDGLKGEVIQWAAFYEHRIKTGTKVIFHLEAFVAKFMRIVEMYLMSMD 351
>gi|339256702|ref|XP_003370227.1| replication factor C subunit 3 [Trichinella spiralis]
gi|316965626|gb|EFV50315.1| replication factor C subunit 3 [Trichinella spiralis]
Length = 355
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 157/224 (70%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VI+L E D LTREAQ ALRRTMEKY ++CR+ILC S S+VI I+SRCL IR+PAPT E
Sbjct: 131 VIVLTEVDKLTREAQHALRRTMEKYSSSCRIILCCQSTSKVIQPIQSRCLPIRVPAPTDE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI +L + K E + E + Q++D NLRRA+L E+ + + + ++EPD
Sbjct: 191 EITEILQRVLKLENCRLSAELIQEIVQKADGNLRRALLSAESVISNERNYLSENPVIEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+I +++TA +I+ EQ+PK LL+VR RLYEL+VH IP +++FK L LL +CD+ +K++
Sbjct: 251 WEICMKETASMILREQTPKMLLQVRGRLYELIVHCIPASLIFKSLYFELLHSCDASIKAE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+AA FE+++ GSK I+H+E++VA FM++Y F+E T +L
Sbjct: 311 VTSVAAKFEYQMTMGSKVIYHLESFVAKFMSLYKHFLEVTAVDL 354
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 46/61 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M LWVDK+RP L +L +H + L+ L+ +GDFPHLLFYGPSGAGKKTRI L+ELY
Sbjct: 1 MLLWVDKHRPKQLSQLSYHKSLSVRLKYLVAQGDFPHLLFYGPSGAGKKTRIWCTLRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|389638296|ref|XP_003716781.1| replication factor C subunit 5 [Magnaporthe oryzae 70-15]
gi|351642600|gb|EHA50462.1| replication factor C subunit 5 [Magnaporthe oryzae 70-15]
Length = 352
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 183/351 (52%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ +EI +VL KKEG T+ + R+A++S RNLRRA+LM E Q
Sbjct: 181 LVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ + I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 EDNTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D DLK + I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDDLKVEVIKWSAFYEHRIKMGTKVIFHLEAFVAKFMRILEMYLMGMD 351
>gi|388851451|emb|CCF54853.1| probable RFC5-DNA replication factor C, 40 KD subunit [Ustilago
hordei]
Length = 353
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 185/345 (53%), Gaps = 68/345 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
L+VDKYRP L +L +H + L +L DFPH+L YGP
Sbjct: 2 LFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHILMYGPSGAGKKTRIACLLRELYGP 61
Query: 44 -----------------------------------SGAGKKTR--IMALLKELYGP---- 62
S AG R I +LKE+
Sbjct: 62 GTYKLKIDQRVFVTPSNRKIDVNIVSSNYHIELTPSDAGNYDRLVIQDILKEIAQTQNVD 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++NE D L+R+AQ ALRRTMEKY+ RL+LCA S S++I IRSRCL +
Sbjct: 122 LNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLLL 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+ AP+ EEI +VL+++ KKE +IP ++ NLR+AIL+ EA ++Q
Sbjct: 182 RVGAPSDEEIKTVLSHVAKKERFSIPDTVQNQICDDCSGNLRKAILVLEALRMQSPDLSA 241
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
I +PDW+IYI TA LI+S+ SP+ LL VR++LYELLVH+IP ++ K+L++ L+
Sbjct: 242 GIAIAKPDWEIYISKTADLILSDPSPQNLLAVRSKLYELLVHAIPPTLILKHLVDNLVKK 301
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D+ +K+ ++ AA +E R GSK IFH+EA+VA+ M + F+
Sbjct: 302 VDAQVKAAIVQKAAFYELRTRTGSKMIFHLEAFVAAVMHIQKSFL 346
>gi|145232232|ref|XP_001399568.1| replication factor C subunit 5 [Aspergillus niger CBS 513.88]
gi|134056481|emb|CAK37570.1| unnamed protein product [Aspergillus niger]
gi|350634494|gb|EHA22856.1| hypothetical protein ASPNIDRAFT_46970 [Aspergillus niger ATCC 1015]
Length = 352
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 179/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDKLRPRSLDALTYHPELSARLKSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GSGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ E+I +VL N KKEG R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSEEDICTVLKNAAKKEGWPEASGLNKRIAKESGRNLRRALLMFEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A+ I++E+SP +LL+VR RLY+LL H IP + K L L+
Sbjct: 241 TDNTLIPPPDWEALIALIAEEILAERSPARLLQVRARLYDLLTHCIPPTTIIKCLTFNLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK I +A +EHRI +GSK IFH+EA+VA FM +Y ++
Sbjct: 301 TKVDDALKPDVIRWSAFYEHRITQGSKVIFHLEAFVAKFMRIYESYL 347
>gi|398399060|ref|XP_003852987.1| replication factor C subunit 5 [Zymoseptoria tritici IPO323]
gi|339472869|gb|EGP87963.1| hypothetical protein MYCGRDRAFT_85700 [Zymoseptoria tritici IPO323]
Length = 357
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 173/343 (50%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP L L +H + ++ LR L GDFPHLL Y
Sbjct: 1 MALLVDKHRPRTLDSLSYHPELSDRLRALAASGDFPHLLIYGPSGAGKKTRISATLRALY 60
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVIQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSRCL
Sbjct: 121 VDAAAKQRFKVVLINEADHLTRDAQAALRRTMEKYSPNLRLILVANSTSNIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ EEI VL + K E R+A+ S RNLRRA+LM EA Q
Sbjct: 181 LVRVSAPSEEEICKVLAKVGKDERYQACETLEKRIARDSKRNLRRALLMFEAVHAQNETV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK II E+SP ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 NDKTSIPPPDWEALIEVIAKEIIEERSPARILQVRAKLYDLLTHCIPATTILKTLTFKLM 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
D +K++ I+ +A +EHRI GSK IFH+EA+VA FM +Y
Sbjct: 301 PKLDDTMKAEIIKWSAFYEHRIRMGSKVIFHLEAFVAKFMRIY 343
>gi|258565365|ref|XP_002583427.1| activator 1 38 kDa subunit [Uncinocarpus reesii 1704]
gi|237907128|gb|EEP81529.1| activator 1 38 kDa subunit [Uncinocarpus reesii 1704]
Length = 352
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 176/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRQRPRTLDALTYHHDLSARLKSLAQRGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGTYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +EI VL KKEG T P R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEDEICQVLKAAAKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAVYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D + PDW+ I A+ I++E+SP ++L++R RLY+LL H IP + K L L+
Sbjct: 241 TNDTVVPPPDWEALISVVAEEIMAERSPARILQIRARLYDLLTHCIPPTTIIKTLTFQLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ D LK + I+ +A FEHRI GSK IFH+EA+VA FM + ++
Sbjct: 301 SRVDDILKPEVIKWSAFFEHRIKLGSKVIFHLEAFVAKFMRILESYL 347
>gi|449540333|gb|EMD31326.1| hypothetical protein CERSUDRAFT_119887 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 184/346 (53%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDK+RP L +L +H + LR L GDFPH+L +
Sbjct: 1 MSLWVDKHRPRTLDELHYHEGLSARLRALAASGDFPHMLFYGPSGAGKKTRIACTLRELF 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GKGVEKLKIDQRVFMTPSKRKLDVNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D LTR+AQ ALRRTMEKY++ R+ILCANS S++I IRSRCL
Sbjct: 121 VDLNAKQRFKVVIINEADSLTRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ E+ +VL ++ KE +P E A + S+ N+R+A+L+ EA K+Q
Sbjct: 181 LMRVAAPSPAEMETVLHHVAAKERFHLPDEAAQAIVADSNGNMRKAVLVFEALKMQSTDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A+LI+SEQ+P +++EVR + YELL H IP +++ K + E ++
Sbjct: 241 TGSLAIAKPDWETYCAKVAELILSEQTPARVMEVRAKFYELLSHCIPASIILKTVAECVV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK+ + AA++E R+ G+K IFH++A+V M++Y QF
Sbjct: 301 DRVDETLKADIMHWAAIYETRMRIGNKKIFHLDAWVVKVMSLYKQF 346
>gi|380484475|emb|CCF39972.1| replication factor C subunit 5 [Colletotrichum higginsianum]
Length = 352
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L+ L +H ++ L +L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPKSLEALSYHQDLSDRLSSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVIQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHE+I VL KKE + +R+AQ+S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEQICDVLAVSAKKENWPMVKGLHMRIAQESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ II E +P ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TDTTPIPPPDWEALISQIAREIIDEHTPARILQVRAKLYDLLTHCIPATTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF---MAMYLQFME 280
D LK++ I+ +A +EHRI G+K IFH+EA+VA F M MYL M+
Sbjct: 301 PLIDDALKAEVIKWSAFYEHRIRMGTKVIFHLEAFVAKFMRIMEMYLMSMD 351
>gi|71004802|ref|XP_757067.1| hypothetical protein UM00920.1 [Ustilago maydis 521]
gi|46096871|gb|EAK82104.1| hypothetical protein UM00920.1 [Ustilago maydis 521]
Length = 353
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 183/345 (53%), Gaps = 68/345 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
L+VDKYRP L +L +H + L +L DFPH+L YGP
Sbjct: 2 LFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHMLMYGPSGAGKKTRIACLLRQLYGP 61
Query: 44 -----------------------------------SGAGKKTR--IMALLKELYGP---- 62
S AG R I +LKE+
Sbjct: 62 GTYKLKIDQRVFVTPSNRKIDVNIVSSNYHIELTPSDAGNYDRLVIQDILKEIAQTQNVD 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++NE D L+R+AQ ALRRTMEKY+ RL+LCA S S++I IRSRCL +
Sbjct: 122 LNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLLL 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+ APT EEI +VL ++ KKE IP ++ + NLR+A+L+ EA ++Q
Sbjct: 182 RVGAPTDEEIKTVLNHVAKKERFNIPDAVQTQICDDCNGNLRKAMLVLEALRMQSPDLSG 241
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
I +PDW+IYI TA LI+S+ SP+ LL VR++LYELLVH+IP ++ K+L + L+
Sbjct: 242 GIGIAKPDWEIYITKTADLILSDPSPQNLLAVRSKLYELLVHAIPPTLILKHLTDNLVKK 301
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D+ +K+ ++ AA +E R GSK IFH+EA+VA+ M + F+
Sbjct: 302 VDAQVKAAIVQKAAFYELRTRTGSKVIFHLEAFVAAVMHIQKSFL 346
>gi|328855373|gb|EGG04500.1| hypothetical protein MELLADRAFT_37376 [Melampsora larici-populina
98AG31]
Length = 363
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 185/347 (53%), Gaps = 74/347 (21%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPS----------------- 44
SL VDK+RP +L LD+H + N +R+L + DFPH LFYGPS
Sbjct: 5 SLLVDKHRPKSLDDLDYHPQLTNRIRSLAQTADFPHCLFYGPSGAGKKTRIAATLRELFG 64
Query: 45 -GAGK--------------------------------------KTRIMALLKELYGP--- 62
GA K ++ I +LKE+ G
Sbjct: 65 PGAAKLRIEQRVFMTPSRRRLEVQIIESNYHLELTPADLAQWDRSVIQDILKEVGGTTQL 124
Query: 63 ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
V++++ D LT +AQ ALRRTME++ ++ RLILCANS S++I IRSRCL
Sbjct: 125 DSTASRKFKVVVIHCADQLTLDAQAALRRTMERHTSSLRLILCANSTSKIIGPIRSRCLL 184
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
+R+ AP ++IV VL ++ KE P E A+ +A ++ NLR+AIL EA + Q
Sbjct: 185 LRVGAPHPDQIVKVLQSVASKEDFIRQFPEETAMSIALSAEGNLRKAILTLEAIRAQDDT 244
Query: 172 FQIDQQIVEP----DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYL 227
F + VE DW++YI A LI +EQSP+KLLE R+ +YELLVH IP ++L L
Sbjct: 245 FSKPRPNVESIPKVDWQLYIEKLANLIRTEQSPEKLLEARSMIYELLVHLIPPSILIMNL 304
Query: 228 LEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
+ LL D L+ I AA +EHR+ G+KPIFHIEA+VA M++
Sbjct: 305 TKALLVKIDDVLRPDIIHFAAFYEHRLRLGTKPIFHIEAFVAKVMSV 351
>gi|425765328|gb|EKV04028.1| DNA replication factor C subunit Rfc5, putative [Penicillium
digitatum Pd1]
gi|425766809|gb|EKV05406.1| DNA replication factor C subunit Rfc5, putative [Penicillium
digitatum PHI26]
Length = 352
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 176/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK RP NL L +H + ++ LR+L + GDFPHLL Y
Sbjct: 1 MALLVDKLRPRNLDALSYHPELSDRLRSLARSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + + LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPADVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLGAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +I S L KKEG T R+A++S RNLRRA+LM E+ Q
Sbjct: 181 LVRVAAPTENDICSALHLAGKKEGWTESEVLNKRIAKESGRNLRRALLMFESIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ + TA I++E+SP +LL VR RLY+LL H IP + K L L+
Sbjct: 241 TDKTMIPPPDWEALVALTADEILAERSPARLLHVRARLYDLLTHCIPPTTILKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
A D LK + I+ +A +EHRI GSK IFH+EA+VA FM +Y ++
Sbjct: 301 ARVDDALKPEVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRIYESYL 347
>gi|440465127|gb|ELQ34467.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
gi|440488575|gb|ELQ68292.1| replication factor C subunit 3 [Magnaporthe oryzae P131]
Length = 425
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 183/351 (52%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIM--ALLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ +EI +VL KKEG T+ + R+A++S RNLRRA+LM E Q
Sbjct: 181 LVRVAAPSEDEICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ + I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 EDNTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D DLK + I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDDLKVEVIKWSAFYEHRIKMGTKVIFHLEAFVAKFMRILEMYLMGMD 351
>gi|343426782|emb|CBQ70310.1| probable RFC5-DNA replication factor C, 40 KD subunit [Sporisorium
reilianum SRZ2]
Length = 353
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 183/345 (53%), Gaps = 68/345 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
L+VDKYRP L +L +H + L +L DFPH+L YGP
Sbjct: 2 LFVDKYRPKALSELHYHQDLSKRLSSLADHEDFPHILMYGPSGAGKKTRIACLLRELYGP 61
Query: 44 -----------------------------------SGAGKKTR--IMALLKELYGP---- 62
S AG R I +LKE+
Sbjct: 62 GTYKLKIDQRVFVTPSNRKIDVNIVSSNYHIELTPSDAGNYDRLVIQDILKEIAQTQNVD 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++NE D L+R+AQ ALRRTMEKY+ RL+LCA S S++I IRSRCL +
Sbjct: 122 LNAKHRFKVVVINEADSLSRDAQSALRRTMEKYMGNLRLVLCATSTSKIIGPIRSRCLLL 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+ APT +EI +VLT + KKE +IP ++ + NLR+A+L+ EA ++Q
Sbjct: 182 RVGAPTDDEIKTVLTLVAKKERFSIPDTIQTQICDDCNGNLRKAMLVLEALRMQSPDLSG 241
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
I +PDW+IYI TA LI+S+ SP LL VR++LYELLVH+IP ++ K+L + L+
Sbjct: 242 GIGIAKPDWEIYIAKTADLILSDPSPHNLLAVRSKLYELLVHAIPPTLILKHLTDNLVKK 301
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D+ +K+ ++ AA +E R GSK IFH+EA+VA+ M + F+
Sbjct: 302 VDAQVKTAIVQKAAFYELRTRTGSKVIFHLEAFVAAVMHIQKSFL 346
>gi|303281866|ref|XP_003060225.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458880|gb|EEH56177.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 356
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 161/252 (63%), Gaps = 15/252 (5%)
Query: 43 PSGAGKKTR--IMALLKEL-------------YGPVIILNETDHLTREAQQALRRTMEKY 87
PS AG K R + ++KE+ + L D+L++EAQ LRRTMEKY
Sbjct: 100 PSDAGNKDRYVVQEVIKEMAKSRPIDAAGNQGFKGAFYLTLVDNLSKEAQHGLRRTMEKY 159
Query: 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
CRL+L NS+S+V+ A+RSRCL IR+ AP+ E+ ++L ++ K+E LT+PPE A R+
Sbjct: 160 SQACRLVLVCNSVSKVLDAVRSRCLPIRVAAPSTTEVEALLHDVAKREKLTLPPELAGRV 219
Query: 148 AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVR 207
A S+RN+RRA+L EA + QYPF DQ + DW+ Y+ A I+ EQSPK+LL++R
Sbjct: 220 AAHSERNMRRALLSLEACRAHQYPFTPDQVVQGTDWEAYVAQIANEILQEQSPKRLLQIR 279
Query: 208 TRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267
RLYELLV+ IP ++ K L L D +LK + + AA FE R+ +GSK I H+EA+
Sbjct: 280 GRLYELLVNCIPPELIMKKLARELCRKIDVELKHEVAKHAAFFERRLAEGSKAIIHMEAF 339
Query: 268 VASFMAMYLQFM 279
+A FMA+Y +++
Sbjct: 340 IAKFMAVYKKYI 351
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 3 LWVDKYRPNNLQKLDF-HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDK+RP+ L K + A HL+ L+ +GD PHLLFYG SGAGKKT +A+L+E++G
Sbjct: 2 LWVDKHRPHALDKFAHANVSTAEHLKRLVADGDCPHLLFYGVSGAGKKTLALAVLREIFG 61
Query: 62 PVIILNETDHLTREAQQALRRTMEKYITT 90
P + + + T + +Q R+ +E +TT
Sbjct: 62 PGVEKVKVEGKTWKIEQGERK-IEVELTT 89
>gi|320586379|gb|EFW99058.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 352
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 178/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDTLTYHPELTDRLRALARSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVASVYHMEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL A S + +I IRSR L
Sbjct: 121 VDQAARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLATSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+H+EI VL ++EG P R+A+ S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSHDEICGVLAAAAQREGWPAVPALQRRVAEGSGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP + + L L+
Sbjct: 241 VDSTPIPPPDWEALIGHVAKEIMDEHTPARILQVRAKLYDLLTHCIPPTTILRTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
A D++LK + I +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 ALIDAELKPEVIRWSAFYEHRIKTGTKVIFHLEAFVAKFMRIFEMYLMSMD 351
>gi|340975786|gb|EGS22901.1| hypothetical protein CTHT_0013780 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L +L +H + + LR+L + GDFPH+L +
Sbjct: 1 MALIVDKHRPRSLDQLTYHTELSERLRSLAQSGDFPHILVYGPSGAGKKTRIVATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSNNRKLEFNIVASVYHLEITPSDVGNYDRVVIQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI VL K+EG + R+A +S RNLR+A+LM E Q
Sbjct: 181 LVRVAAPTHEEICDVLAASAKREGWPVVKGLHQRIAVESGRNLRKALLMLETVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ I+ E +P ++L+VR++LY+LL H IP + + L L+
Sbjct: 241 TDTTPIPPPDWEALIGQIAREIMEEHTPARILQVRSKLYDLLTHCIPATTILRTLAFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK++ I+ AA FEHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDALKAEVIKWAAFFEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|223998512|ref|XP_002288929.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220976037|gb|EED94365.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 359
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 152/224 (67%), Gaps = 5/224 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ ALRRTMEKY ++CRLILC N+ S+VI +RSRCL IR+ AP+H+
Sbjct: 133 VVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRCLGIRVAAPSHD 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM---CEASKVQQYPFQI--DQQ 177
EI +VL + +KE +T+P E A+ LA+ S+RNLRRA+LM C + P ++ +Q
Sbjct: 193 EIATVLKTVARKESITLPDELAISLARSSNRNLRRALLMLESCHVTTRDDSPKELKPNQP 252
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
I DW+ YI A I EQSPK+L+ R +LYELL++ IP + K L+ LL D
Sbjct: 253 IPHTDWERYISQLASEITREQSPKRLIMAREKLYELLINCIPAQTILKTLVMELLPTLDD 312
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
+K + + AA +EHRI GSK IFH+EA++A FM++Y +++ D
Sbjct: 313 SIKGEVVTWAAFYEHRIALGSKEIFHLEAFIAKFMSIYKRYIND 356
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDK+RP L +L +H L +L + G PHLLFYGP G+GKKTRI ALL+ ++G
Sbjct: 2 LWVDKHRPTRLTQLTYHGTLTARLESLSADPGGLPHLLFYGPPGSGKKTRIAALLRSVFG 61
>gi|429857955|gb|ELA32792.1| DNA replication factor c subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 352
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + ++ L +L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHQELSDRLGSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+HEEI VL KKE + +R+AQ+S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSHEEICEVLAVSAKKENWPMVKGLHMRIAQESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ I+ E +P ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TDSTPIPPPDWEALISQIAREIVEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF---MAMYLQFME 280
D LK++ I+ +A +EHRI G+K IFH+EA+VA F M MYL M+
Sbjct: 301 PLIDDALKAEVIKWSAFYEHRIRMGTKVIFHLEAFVAKFMRIMEMYLMSMD 351
>gi|346326608|gb|EGX96204.1| replication factor C subunit 5 [Cordyceps militaris CM01]
Length = 352
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 177/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + LR L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHDELTERLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTSSNRKLEFNIVASVYHQEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+HE+I VL + KKE ++ R+A +S RNLR+A+LM EA Q
Sbjct: 181 LVRVPAPSHEQICDVLASAAKKENWSVIKGLHQRIAVESGRNLRKALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW I AK I+ E +P ++L+VR++LY+LL H IP ++ K L LL
Sbjct: 241 TDSTPIPPADWDALIGQIAKEIMDEHTPARILQVRSKLYDLLTHCIPPTIILKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK + + +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 GMIDDGLKGEVVRWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|392593574|gb|EIW82899.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 360
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 186/347 (53%), Gaps = 69/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDK+RP L L +H + L++L GDFPH+L +
Sbjct: 1 MSLWVDKFRPKTLDDLHYHHSLSARLKSLAASGDFPHMLFYGPSGAGKKTRVTCTLRQLF 60
Query: 42 GP-----------------------------------SGAGKKTR--IMALLKELYGP-- 62
GP S AG R I LLKE+
Sbjct: 61 GPGVEKLKIDQRVFLSPSKRKLEINIVQSNFHIEITPSEAGNYDRLVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
+++NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 121 VDLNARQRFKAVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EE+ VL ++ KK +PPE + ++A++S N+R+A+L+ EA K+Q
Sbjct: 181 LMRVAAPTTEEMQVVLEHVAKKLKFDMPPEASSQIAEESGGNMRKALLVFEALKMQSPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y R A+LI+ +QSP +++EVR++LYELL H IP ++ K + + ++
Sbjct: 241 SGPLSIAKPDWETYCRKVAQLILKDQSPSQVMEVRSKLYELLSHCIPPTIILKTVADAIV 300
Query: 233 ANC-DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ D+ L+ + A +E R+ G+K IFH+EA+V M++Y F
Sbjct: 301 DSVEDNGLRRDIMHWTAFYEQRMRIGNKKIFHLEAWVVKVMSLYKHF 347
>gi|255946333|ref|XP_002563934.1| Pc20g14580 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588669|emb|CAP86787.1| Pc20g14580 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 173/347 (49%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK RP L L +H + ++ LR+L GDFPHLL Y
Sbjct: 1 MALLVDKLRPRTLDALSYHPELSDRLRSLAHSGDFPHLLVYGPSGAGKKTRVIATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + + LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPADVGTYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +I S L KKEG T R+A++S RNLRRA+LM E+ Q
Sbjct: 181 LVRVAAPTESDICSALHLAGKKEGWTESEVLNKRIAKESGRNLRRALLMFESIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ + TA I++E+SP +LL VR RLY+LL H IP + K L L+
Sbjct: 241 TDKTPIPPPDWEALVTLTADEILAERSPARLLHVRARLYDLLTHCIPPTTILKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
A D LK I+ +A +EHRI GSK IFH+EA+VA FM +Y ++
Sbjct: 301 ARVDDALKPDVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRIYESYL 347
>gi|402076632|gb|EJT72055.1| replication factor C subunit 5 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 352
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H ++ LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHEALSDRLRSLARSGDFPHLLIYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNKKLEFNIVASVYHLEITPSDVGNYDRVVIQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EE+ +VL + K+EG + + R+A++S RNLRRA+LM E Q
Sbjct: 181 LVRVAAPTEEEVCTVLASSAKREGWAVSEKLHQRIAKESGRNLRRAMLMLETVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ + AK I+ E +P ++L+VR + Y+LL H IP + K L L+
Sbjct: 241 EDTTSIPPPDWEALVGQIAKEIMDEHTPARILQVRAKFYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK + I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDALKVEVIQWSAFYEHRIKMGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|358386824|gb|EHK24419.1| hypothetical protein TRIVIDRAFT_178042 [Trichoderma virens Gv29-8]
Length = 352
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 178/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L+ L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G+ R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH EI VL KKE + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHAEICDVLAQSAKKENWEVVKGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW+ + AK II E +P ++L+VR +LY+LL H IP + K L LL
Sbjct: 241 TDSTPIPPADWEALVGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK + I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 GLIDDGLKGEVIKWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|322705234|gb|EFY96821.1| activator 1 38 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 352
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 178/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + ++ L++L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHPELSHRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D L+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADQLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI SVL KKEG + R+A +S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICSVLAMSAKKEGWGVVKGLHQRIAVESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I DW+ I AK I+ E +P ++L+VR + Y+LL H IP + K L LL
Sbjct: 241 SEDTPIPPADWEALIGQIAKEIMDEHTPARILQVRAKFYDLLTHCIPPTTILKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK + I+ +A +EHRI G+K IFH+EA+VA FM MYL ME
Sbjct: 301 NLIDDGLKGEVIQWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSME 351
>gi|453088544|gb|EMF16584.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 358
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 178/357 (49%), Gaps = 70/357 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP L+ L +H + + LR L GDFPHLL Y
Sbjct: 1 MALLVDKHRPRTLETLSYHPELSERLRALANSGDFPHLLIYGPSGAGKKTRITATLRALY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D LTR+AQ ALRRTMEKY RLIL ANS S +I IRSRCL
Sbjct: 121 VDLAAKQRFKVVVINEADQLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL + K E T ++A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVSAPTEAEICEVLAKVGKDERYTSCEPLEKKIAKESKRNLRRALLMFEAIHAQNEQI 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK II E+SP ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 SEKTPIPPPDWEALIEVIAKEIIEERSPARILQVRAKLYDLLTHCIPATTILKTLTFKLM 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY-LQFME-DTLSNLF 287
D LK + ++ AA +EHRI GSK IFH+EA+V FM +Y + FM D +LF
Sbjct: 301 PKLDDSLKPEVVKWAAFYEHRIRMGSKVIFHLEAFVTKFMRIYEMNFMGMDLDDDLF 357
>gi|46105402|ref|XP_380505.1| RFC5_NEUCR Probable activator 1 subunit 5 (Replication factor C
subunit 5) (Replication factor C5) [Gibberella zeae
PH-1]
Length = 354
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 179/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GD PHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHDELSERLRSLAQNGDVPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI +VL KKE + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICNVLAVSAKKENWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNDKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW+ I A+ I +E +P ++LEVR++LY+LL H IP + K L L+
Sbjct: 241 TDSTPIPPADWEALIGQIAQEIYAEHTPARILEVRSKLYDLLTHCIPPTTILKTLAFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
A D LK + I+ AA +EHR+ G+K IFH+EA+VA FM MYL M+
Sbjct: 301 ALVDDGLKGEVIQWAAFYEHRVKTGTKVIFHLEAFVAKFMRIVEMYLMSMD 351
>gi|452003770|gb|EMD96227.1| hypothetical protein COCHEDRAFT_1152298 [Cochliobolus
heterostrophus C5]
Length = 355
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 175/346 (50%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP NL+ L +H + ++ LR L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL+ + KKEG R+A+ S RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPTEAEICDVLSKVGKKEGWKDVESLHQRIAKDSGRNLRKALLMFEAVHAQNEKI 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ I+ E+SP++LL+VR LY+LL H I + K L L+
Sbjct: 241 TDQTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDPTTIIKTLTWKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK + I+ AA +EHR G+K IFH+EA+VA +M +Y +
Sbjct: 301 PKTDDALKPEVIKWAAFYEHRCKMGAKHIFHLEAFVAKYMRLYESY 346
>gi|408392830|gb|EKJ72144.1| hypothetical protein FPSE_07682 [Fusarium pseudograminearum CS3096]
Length = 354
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 179/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHDELSERLRSLAQNGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI +VL KKE + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICNVLAVSAKKENWPVVQGLHQRIAEESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW+ I A+ I +E +P ++LEVR++LY+LL H IP + K L L+
Sbjct: 241 TDSTPIPPADWEALIGQIAQDIYAEHTPARILEVRSKLYDLLTHCIPPTTILKTLAFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
A D LK + I+ AA +EHR+ G+K IF +EA+VA FM MYL M+
Sbjct: 301 ALVDDGLKGEVIQWAAFYEHRVKTGTKVIFQLEAFVAKFMRIVEMYLMSMD 351
>gi|330801755|ref|XP_003288889.1| replication factor C subunit [Dictyostelium purpureum]
gi|325081034|gb|EGC34565.1| replication factor C subunit [Dictyostelium purpureum]
Length = 349
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 159/246 (64%), Gaps = 13/246 (5%)
Query: 42 GPSGAGKKTRIMALLKEL----------YGP--VIILNETDHLTREAQQALRRTMEKYIT 89
G +G+ + I ++KE+ GP ++ILNE D L+++AQ ALRRTMEKY T
Sbjct: 98 GEAGSYDRVVIQTIIKEIAQSPPIENADLGPFKIVILNEVDKLSKDAQHALRRTMEKYAT 157
Query: 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ 149
CRLILC +S ++VI I+SRCL IRIPAPT+EEI VL+ + + E +P + + +A
Sbjct: 158 FCRLILCCDSTAKVIDPIKSRCLGIRIPAPTNEEIEKVLSKVAQSEKFELPSKLSQNIAN 217
Query: 150 QSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTR 209
Q + NLR A+L+ E+ K +QYPFQ +I DW+ YI I EQSP KLL +R +
Sbjct: 218 QCNGNLRYALLLLESQKAKQYPFQ-SSEIPLLDWENYISQIVNDIFQEQSPAKLLVIRAK 276
Query: 210 LYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVA 269
LYELL H IP +++FK + L D DLK ++I A+ ++H+ GSKPIFH+EA++A
Sbjct: 277 LYELLGHCIPPDLIFKTICLELFKKLDQDLKFEAIHWASYYQHKSQLGSKPIFHLEAFIA 336
Query: 270 SFMAMY 275
FM++Y
Sbjct: 337 KFMSIY 342
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 57/71 (80%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW+DKY+P++L K+D+H + +L+N++K GDFPHLL YGPSGAGKKTRI+A+L+E+YG
Sbjct: 2 LWIDKYKPSSLDKMDYHKDISANLKNMIKSGDFPHLLVYGPSGAGKKTRILAILQEIYGV 61
Query: 63 VIILNETDHLT 73
+ + DH T
Sbjct: 62 NVNKLKIDHRT 72
>gi|407928875|gb|EKG21718.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 354
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 175/343 (51%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + ++ LR L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRSLDALTYHHELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTSSNRKLEFNIVASNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL A S S +I IRSR L
Sbjct: 121 VDLAARQRFKVVVVNEADHLTRDAQAALRRTMEKYSPNLRLILLAESTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT E+IV L +KEG R+A+ RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEEDIVEALKVAGRKEGWKENEGLNRRIARDCGRNLRRALLMFEAVHAQNDSV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I AK I+ E+SP ++++VR +LY+LL H IP + K L L+
Sbjct: 241 TENTPIPPPDWEALIAQIAKEIVEERSPARIMQVRAKLYDLLTHCIPPTTIIKTLTWKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
CD +LK+ I+ +A +EHRI GSK IFH+EA+VA FM +Y
Sbjct: 301 PLCDDELKADVIKWSAFYEHRIKMGSKVIFHLEAFVAKFMRLY 343
>gi|171689292|ref|XP_001909586.1| hypothetical protein [Podospora anserina S mat+]
gi|170944608|emb|CAP70719.1| unnamed protein product [Podospora anserina S mat+]
Length = 352
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 180/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+L VDK+RP +L L +H + ++ LR+L + GDFPHLLF Y
Sbjct: 1 MALIVDKHRPRSLDALTYHDELSDRLRSLAQSGDFPHLLFYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL S + +I IRSRCL
Sbjct: 121 VDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILVGESTAGIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ PT E+ VL C++EG + R+A++S RNLRRA+LM E Q
Sbjct: 181 LVRVARPTVGEVEGVLRGSCEREGWEVREGLVGRVARESGRNLRRALLMLEGVYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I PDW+ I A+ I++E + ++L+VR++LY+LL H IP + K L L+
Sbjct: 241 TDDTPIPPPDWEGLIEQIAQEIMAEHTSARILQVRSKLYDLLTHCIPPTTILKTLTFKLM 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D DLK + I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDDLKPEVIKWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|116205059|ref|XP_001228340.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176541|gb|EAQ84009.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 352
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 178/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL +
Sbjct: 1 MALIVDKHRPRSLDALTYHEELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGSYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSARQKFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT +EI VL KKEG + R+A++S RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPTQDEISDVLAASAKKEGWPVVKGLHQRIAKESGRNLRKALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR++LY+LL H IP + + L L+
Sbjct: 241 TDTTPIPPPDWEALIGQIAKEIMEEHTPARILQVRSKLYDLLTHCIPATTILRTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK+ I+ AA FEHRI G+K IFH+EA+VA FM ++ ++
Sbjct: 301 PLIDDALKADVIKWAAFFEHRIRTGTKVIFHLEAFVAKFMRIFEMYL 347
>gi|358399724|gb|EHK49061.1| hypothetical protein TRIATDRAFT_133438 [Trichoderma atroviride IMI
206040]
Length = 352
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 179/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L+ L +H + ++ L++L + GDFPHLL +
Sbjct: 1 MALIVDKHRPRSLEALSYHQELSDRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G+ R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI VL KKE + R+A +S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICDVLAQSAKKENWEVVKGLHERIAVESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW+ I AK II E +P ++L+VR +LY+LL H IP + K L LL
Sbjct: 241 TDTTPIPPADWEALIGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK + I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 GLIDDGLKGEVIKWSAFYEHRIKIGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|340382661|ref|XP_003389837.1| PREDICTED: replication factor C subunit 3-like [Amphimedon
queenslandica]
Length = 195
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 136/195 (69%), Gaps = 26/195 (13%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP NL KL +H +QA L++ ++ DFPHLL YGPSGAGKKTR++ +L+ELY
Sbjct: 1 MSLWVDKYRPTNLNKLHYHQEQAASLKDWVQSDDFPHLLIYGPSGAGKKTRMVCILRELY 60
Query: 61 G-------------------------PVIILNETDHLTREAQQALRRTMEKYITTCRLIL 95
G PV++L E D LT++AQ ALRRTME Y TCRLIL
Sbjct: 61 GAGVEKLRIEHMEFIVLTHKLFIINIPVVVLTEVDRLTKDAQHALRRTMELYTGTCRLIL 120
Query: 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN- 154
NS S++IPAI+SRCL +R+PAPT +EI SVL +C KE LTIP A R+A++S+RN
Sbjct: 121 VCNSTSKLIPAIKSRCLAVRVPAPTIDEICSVLQYVCHKESLTIPDTLAKRIAEKSERNH 180
Query: 155 LRRAILMCEASKVQQ 169
LR+AIL+CEA +VQQ
Sbjct: 181 LRKAILLCEACRVQQ 195
>gi|268552547|ref|XP_002634256.1| C. briggsae CBR-RFC-3 protein [Caenorhabditis briggsae]
Length = 354
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 188/348 (54%), Gaps = 73/348 (20%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGDFPHLLF----------------- 40
M+LWVDKYRP L +D+H +QA HL+ L PHLLF
Sbjct: 1 MALWVDKYRPKELLGKDGVDYHLEQAKHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLR 59
Query: 41 --YG-----------------------------------PSGAGKKTRIMA--LLKELYG 61
YG PS G R++ L+KE+
Sbjct: 60 ELYGVGVDKTQLIMKAFTTPSNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDLVKEMAQ 119
Query: 62 P------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRS 109
V++L E D LTR+AQ LRRTMEKY C+++LC S+S++I ++S
Sbjct: 120 TSQIEASSQKSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLCCESLSRIIEPLQS 179
Query: 110 RCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ- 168
RC+ I +PAPT E+ VL + +KE L +P ++ ++S+ NLRRAILM EA K++
Sbjct: 180 RCIIINVPAPTDVEVEKVLRKVIQKENLNMPDSVLQKIVEKSEGNLRRAILMTEAIKMEN 239
Query: 169 QYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
+ + QI P+W++YI++TA+LI+ +Q+ L+VR RLYE++ IP +V+FK LL
Sbjct: 240 EGGIPANAQIPVPEWEVYIQETARLILQKQTNDMALKVRERLYEVISRLIPPHVIFKKLL 299
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276
E LL +C S + + + AA FEHR+ G KPIFH+EA+V +FM +YL
Sbjct: 300 EYLLPSCPSSIVREVVSEAAKFEHRLLLGQKPIFHLEAFVIAFMEIYL 347
>gi|451855756|gb|EMD69047.1| hypothetical protein COCSADRAFT_31825 [Cochliobolus sativus ND90Pr]
Length = 355
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 175/346 (50%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP NL+ L +H + ++ LR L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLGAKQRFKIVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL+ + KKEG R+A+ S RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPTEAEICDVLSKVGKKEGWKDIESLHQRIAKDSGRNLRKALLMFEAVHAQNEKI 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ I+ E+SP++LL+VR LY+LL H I + K L L+
Sbjct: 241 TDQTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDPTTIIKTLTWKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK + I+ AA +EHR G+K IFH+EA+VA +M +Y +
Sbjct: 301 PKTDDALKPEVIKWAAFYEHRCKMGAKHIFHLEAFVAKYMRLYESY 346
>gi|440638755|gb|ELR08674.1| replication factor C subunit 5 [Geomyces destructans 20631-21]
Length = 352
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 176/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + LR+L + GDFPHLL +
Sbjct: 1 MALLVDKHRPRSLDTLSYHDDLSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL A+S + +I IRSR L
Sbjct: 121 VDQSARQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLADSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL KEG + E LR+AQ+S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEAEICDVLAKTGAKEGWPLAEELNLRVAQESGRNLRRALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A I++E SP ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TDQTPIPPPDWEALISLIADEIMAEHSPARILQVRAKLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D +LK++ I +A +EHR+ GSK IFH+EA+V FM ++ ++
Sbjct: 301 PKVDDELKAEVIMWSAFYEHRVRIGSKVIFHLEAFVTKFMKIHETWL 347
>gi|336383955|gb|EGO25103.1| hypothetical protein SERLADRAFT_368530 [Serpula lacrymans var.
lacrymans S7.9]
Length = 356
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 182/347 (52%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDK+RP L L +H + L++L GDFPH+L +
Sbjct: 1 MSLWVDKFRPKTLDDLHYHEGLSARLKSLAASGDFPHMLFYGPSGAGKKTRISCTLRQLF 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ LLKE+
Sbjct: 61 GSGVERLKIDQRVFLSPSKRKLEINIVQSNYHIEITPSEAGNYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 121 VDLNAKQRFKVVVINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EE+ +VL ++ KK +P + + ++ S NLR+A+L+ EA K+Q
Sbjct: 181 LMRVAAPTPEEMQTVLHHVAKKLKFDLPDDASKQIVDDSGGNLRKALLVFEALKMQSPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A LI+ EQSP +++EVR + YELL H IP ++ K + E ++
Sbjct: 241 SGSLAIAKPDWETYCHKVADLIVQEQSPARVMEVRAKFYELLSHCIPPTIVLKTVAERVV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK+ + AA +E R+ G+K I+H+EA+V M++Y F+
Sbjct: 301 ERVDESLKADIMHWAAFYEGRMRIGNKKIYHLEAWVVKVMSLYKHFV 347
>gi|400600329|gb|EJP68003.1| putative activator 1 subunit 5 [Beauveria bassiana ARSEF 2860]
Length = 352
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 177/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHDELTDRLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTSSNRKLEFNIVASVYHQEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+HEEI VL KKE ++ R+A +S RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPSHEEICDVLAYAAKKENWSVVKGLHQRIAVESGRNLRKALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW I A+ I+ E +P ++L+VR++LY+LL H IP + K L LL
Sbjct: 241 TDSTPIPPADWDALIGQIAREIMDEHTPARILQVRSKLYDLLTHCIPPTTILKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
+ D LK + I +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 SMIDDGLKGEVIRWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|327303738|ref|XP_003236561.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326461903|gb|EGD87356.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 173/347 (49%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + LR L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL AN+ + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ ++I VL KKEG P RLA++S RNLRRA+LM EA Q
Sbjct: 181 LVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 SDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK + I+ +A +EHRI GSK IFH+EA+VA FM + ++
Sbjct: 301 PKVDDALKPEVIKWSAFYEHRIKMGSKVIFHLEAFVAKFMRILESYL 347
>gi|159475545|ref|XP_001695879.1| DNA replication factor C complex subunit 3 [Chlamydomonas
reinhardtii]
gi|158275439|gb|EDP01216.1| DNA replication factor C complex subunit 3 [Chlamydomonas
reinhardtii]
Length = 356
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 180/344 (52%), Gaps = 71/344 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANH------------------------------LRNLL 30
M LWVDKYRPN+ K H A++ LR +
Sbjct: 1 MPLWVDKYRPNSFDKFVVHKDIADNLKKLVATGDFPHTLFYGPPGAGKKTLVMALLRAIY 60
Query: 31 KEG-------------DFP--------------HLLFYGPSGAGKKTR--IMALLKELYG 61
G D P H L P+ G R + ++KE+
Sbjct: 61 GAGVEKVRVETKPWKIDLPSRKLEVELTTLSSNHHLELNPADVGSNDRYVVQEIIKEMAR 120
Query: 62 P------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRS 109
V++LNE D L++EAQQ LRRTMEKY + CRLI+ +++S+V+ +RS
Sbjct: 121 SRPMGADGSRGFKVLVLNEVDRLSKEAQQGLRRTMEKYSSACRLIMVCSNVSKVMEPVRS 180
Query: 110 RCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169
RCLC+R+ AP+ +++ VL + KKE L +P FA R+ + RNLRRA+L E + QQ
Sbjct: 181 RCLCVRVAAPSDAQVMEVLQGVAKKENLVLPEAFAARVVDYAGRNLRRALLCLEVCRAQQ 240
Query: 170 YPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE 229
YPF Q+ DW++YI + AK I+ EQSPK+L VR++LYELL + +P ++ + L
Sbjct: 241 YPFGDSQEPQRADWELYIAEVAKNIMDEQSPKQLYLVRSKLYELLANCVPPELIMRQLTF 300
Query: 230 GLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273
LL D ++K +++ AA FE R+ +G+K IFH+EA+VA M+
Sbjct: 301 ELLKRMDDEIKLETVSYAAQFEQRLQEGAKAIFHLEAFVARVMS 344
>gi|326485099|gb|EGE09109.1| DNA replication factor C subunit Rfc5 [Trichophyton equinum CBS
127.97]
Length = 352
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 175/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + LR L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL AN+ + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ ++I VL KKEG P RLA++S RNLRRA+LM EA Q
Sbjct: 181 LVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 SDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLAFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK + I+ +A +EHRI GSK IFH+EA+VA FM + ++
Sbjct: 301 PKVDDALKPEVIKWSAFYEHRIKMGSKVIFHLEAFVAKFMRIVESYL 347
>gi|322695635|gb|EFY87440.1| activator 1 38 kDa subunit [Metarhizium acridum CQMa 102]
Length = 352
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 178/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + ++ L++L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHPELSHRLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDSRVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D L+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADQLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTHEEI SVL KKEG + R+A +S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHEEICSVLAVSAKKEGWEVVKGLHERIAVESGRNLRRALLMYEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I DW+ I AK I+ E +P ++L+VR + Y+LL H IP + K L LL
Sbjct: 241 SENTPIPPADWEALIGQIAKEIMDEHTPARILQVRAKFYDLLTHCIPPTTILKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK + I+ +A +EHRI G+K IFH+EA+VA FM MYL ME
Sbjct: 301 KLIDDGLKGEVIQWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSME 351
>gi|17541990|ref|NP_502517.1| Protein RFC-3 [Caenorhabditis elegans]
gi|3874848|emb|CAA94339.1| Protein RFC-3 [Caenorhabditis elegans]
Length = 354
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 185/348 (53%), Gaps = 73/348 (20%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGDFPHLLF----------------- 40
M+LWVDKYRP +L +D+H +QANHL+ L PHLLF
Sbjct: 1 MALWVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLR 59
Query: 41 --YG-----------------------------------PSGAGKKTRIMA--LLKELYG 61
YG PS G R++ L+KE+
Sbjct: 60 ELYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQ 119
Query: 62 P------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRS 109
V++L E D LTR+AQ LRRTMEKY C+++L S+S++I ++S
Sbjct: 120 TSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQS 179
Query: 110 RCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169
RC+ I +PAPT E++ VL + ++E +P ++ ++S+ NLRRAILM EA +++
Sbjct: 180 RCIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMEN 239
Query: 170 YPFQIDQQIVE-PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
+ ++ P+W+IYI++TA+LI+ +QS LL+VR RLYELL IP V+FK LL
Sbjct: 240 ESGVAESVVIPVPEWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLL 299
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276
E LL C + + + AA FEHR+ G K IFH+E +VA+FM +YL
Sbjct: 300 EHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMDIYL 347
>gi|320035707|gb|EFW17648.1| hypothetical protein CPSG_06091 [Coccidioides posadasii str.
Silveira]
gi|392868672|gb|EAS34460.2| replication factor C subunit 5 [Coccidioides immitis RS]
Length = 352
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 172/340 (50%), Gaps = 68/340 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + + L+ L + GDFPHLL Y
Sbjct: 1 MALLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EEI VL K+EG + P R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLMFEAVYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D + PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 TDDTVVPPPDWEALISLIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTFKLV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ D LK + I+ +A +EHRI GSK IFH+EA+VA FM
Sbjct: 301 SKVDDILKPEVIKWSAFYEHRIKMGSKVIFHLEAFVAKFM 340
>gi|340522517|gb|EGR52750.1| replication factor C, subunit 5-like protein [Trichoderma reesei
QM6a]
Length = 352
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 178/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L+ L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLEALSYHHELSERLQSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G+ R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASNYHLEITPSDVGQYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH EI L K+E + R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHAEICDALAQSAKRENWEVVQGLHQRIAEESGRNLRRALLMLEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I DW+ I AK II E +P ++L+VR +LY+LL H IP + K L LL
Sbjct: 241 TDTTPIPPADWEALIGQIAKEIIEEHTPARILQVRAKLYDLLTHCIPPTTIIKTLTFKLL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK++ I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 NLIDDGLKAEVIKWSAFYEHRIKTGTKVIFHLEAFVAKFMRILEMYLMSMD 351
>gi|412989140|emb|CCO15731.1| replication factor C subunit 3 [Bathycoccus prasinos]
Length = 410
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 160/248 (64%), Gaps = 14/248 (5%)
Query: 42 GPSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRRTMEKY 87
PS AG K R + ++KE+ +++L E D L++EAQ LRRTMEKY
Sbjct: 154 NPSDAGYKDRYVVQEVIKEMARSRPIDAQGNAGYKILVLTECDKLSKEAQHGLRRTMEKY 213
Query: 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
+ CRLIL A+S+++V+ A+RSRCL +R+ AP E+I VL +I KE LT+PP+ ++
Sbjct: 214 SSACRLILIADSVNRVLEAVRSRCLPVRVAAPRAEDIEKVLYDIAAKEKLTLPPQLCSKV 273
Query: 148 AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVR 207
A + R+LRRAIL EA +V YPF+ Q + DW++YI A I++EQSPK+LL+VR
Sbjct: 274 AVFAKRDLRRAILALEACRVANYPFKETQSVQTTDWELYIAQIAAEILAEQSPKRLLQVR 333
Query: 208 TRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267
R+YELLV+ IP ++F+ L L D ++K + I AA FEH++ GSK I HIEA+
Sbjct: 334 GRIYELLVNCIPPTLIFQTLCFYLSKRLDDEMKHEVIRWAAQFEHKLQLGSKAIIHIEAF 393
Query: 268 VASFMAMY 275
+A FMA Y
Sbjct: 394 IAQFMATY 401
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 1 MSLWVDKYRPNNLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP L + + + ANHL+ L+K+GD PHLLFYGPSG+GKK+ ++ALL +
Sbjct: 54 MSLWVDKYRPIELNQCEHVNASVANHLKELVKDGDCPHLLFYGPSGSGKKSLVLALLSTI 113
Query: 60 YGP 62
+GP
Sbjct: 114 FGP 116
>gi|396464153|ref|XP_003836687.1| similar to DNA replication factor C subunit Rfc5 [Leptosphaeria
maculans JN3]
gi|312213240|emb|CBX93322.1| similar to DNA replication factor C subunit Rfc5 [Leptosphaeria
maculans JN3]
Length = 355
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 173/346 (50%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP NL L +H + LR L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRNLDALSYHPGLSERLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL+ + KKEG R+A++S RNLR+A+LM EA Q
Sbjct: 181 LVRVSAPTETEICEVLSKVGKKEGWKEVESLNRRIAKESGRNLRKALLMFEAVHAQNEKI 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A+ I+ E+SP++LL+VR LY+LL H I + K L L+
Sbjct: 241 TDQTHIPPPDWEALIEQIARQIVEERSPQRLLQVRASLYDLLSHCIDSTTIIKTLTWKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ LK + I+ AA +EHR G+K IFH+EA+VA +M +Y +
Sbjct: 301 PKTEDALKPEVIKWAAFYEHRCKLGAKQIFHLEAFVAKYMRLYESY 346
>gi|212537245|ref|XP_002148778.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
marneffei ATCC 18224]
gi|210068520|gb|EEA22611.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
marneffei ATCC 18224]
Length = 352
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 179/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPRSLDSLTYHPELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ EI +VL + KE E +R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSETEICAVLKSAAAKENWAPCDELNMRIAKESGRNLRRALLMFEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A I++E+SP ++L+VR RLY+LL H IP ++ K L L+
Sbjct: 241 SDKTPIPPPDWEALISMVADEILAERSPARILQVRERLYDLLTHCIPPTMVLKTLTFNLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ D LK + I+ +A +EHRI GSK IFH+EA+VA FM +Y ++
Sbjct: 301 SKVDDALKPEVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRIYEGYL 347
>gi|308803597|ref|XP_003079111.1| putative replication factor (ISS) [Ostreococcus tauri]
gi|116057566|emb|CAL53769.1| putative replication factor (ISS) [Ostreococcus tauri]
Length = 397
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 143/213 (67%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D L+REAQ LRRTMEKY +CRL L A S+V+ A++SRCL IR+P P+ E
Sbjct: 176 VLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSKVMDALQSRCLPIRVPGPSIE 235
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI ++L + KKE L +PPE A R+AQ S RN+RRA+L E +V YPF+ Q + D
Sbjct: 236 EIENLLHEVAKKEKLELPPELATRVAQASGRNMRRALLTLETCRVMNYPFKPTQAVQTTD 295
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++YI I++EQSP +LL+VR RLYEL V+ IP ++ L + L+ D ++K +
Sbjct: 296 WELYINQIGSEILAEQSPSRLLQVRGRLYELFVNCIPPEIILTNLAKALMKRVDVEVKHQ 355
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
AA FE R+ +G KPI H+EA+VA FMA+Y
Sbjct: 356 ICFWAAHFEVRMQRGGKPIMHLEAFVAQFMALY 388
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 2 SLWVDKYRPNNL-QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+LWVDK+RP+ L + + A HL+ L+ GD PHL F+GPSGAGKKT +A+L+E++
Sbjct: 43 ALWVDKHRPHELGDATTVNARTAKHLKLLIARGDCPHLFFHGPSGAGKKTLALAVLREIF 102
Query: 61 GPVI 64
G +
Sbjct: 103 GAGV 106
>gi|409048764|gb|EKM58242.1| hypothetical protein PHACADRAFT_171504 [Phanerochaete carnosa
HHB-10118-sp]
Length = 357
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 184/347 (53%), Gaps = 69/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVD YRP +L +L +H + LR+L GDFPH+L +
Sbjct: 1 MSLWVDCYRPKSLDELHYHESLSARLRSLAASGDFPHMLFYGPSGAGKKTRIACTLKELF 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GKGVEKLKIDQRVFLTPSRRKLDVNVVQSNFHLEITPSEVGNYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D LTR+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 121 VDINARHRFKVVVINEADSLTRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKVQQYP 171
+R+ APT EE+V+V+ ++ ++ I E + +A+ ++ NLR+A+L+ EA K+Q
Sbjct: 181 LVRVAAPTEEEMVTVMKHVASRQNFRIEDESVVCEIARDAEGNLRKALLVFEALKMQTGS 240
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
I +PDW+ Y +I EQSP+++++VRT+LYELL H IP V+ K + +
Sbjct: 241 LNGPITIAKPDWETYCIKVGDMITQEQSPQRVMDVRTKLYELLSHCIPPTVILKTIAARV 300
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ D LK+ + AA++E R+ G+K IFH+EA+V M++Y F
Sbjct: 301 VEKVDESLKADIMHWAAVYEVRMRVGNKKIFHLEAWVVKVMSIYKHF 347
>gi|452847021|gb|EME48953.1| hypothetical protein DOTSEDRAFT_142483 [Dothistroma septosporum
NZE10]
Length = 356
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 173/343 (50%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP ++ L +H + + LR L GDFPHLL Y
Sbjct: 1 MALLVDKHRPRTIETLTYHPELSERLRALANSGDFPHLLVYGPSGAGKKTRITATLRQLY 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GAGVEKIKIDSRVFQTTSNRKLEFNIVSSNYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSRCL
Sbjct: 121 VDLAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ EEI VL + K E ++A+ S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSEEEICEVLAKVGKDERYQSCEPLEKKVAKDSKRNLRRALLMFEAVHAQNENV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I + AK II+E+SP ++++ R +LY+LL H IP ++ K L L+
Sbjct: 241 SEKTPIPPPDWEALIDEIAKEIIAERSPARIMQARAKLYDLLSHCIPATMILKTLTFKLM 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
D LK + ++ +A +EHRI GSK IFH+EA+V FM +Y
Sbjct: 301 PKLDDSLKPEIVKWSAFYEHRIRMGSKVIFHLEAFVVKFMRIY 343
>gi|345564932|gb|EGX47888.1| hypothetical protein AOL_s00081g215 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 178/347 (51%), Gaps = 69/347 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
L+VDK+RP L L +H ++ L+ L GDFPHLL YGP
Sbjct: 2 LFVDKHRPKTLDSLTYHHDLSSRLKAL-ANGDFPHLLVYGPSGAGKKTRIIATLKELYGP 60
Query: 44 -----------------------------------SGAGKKTRIM--ALLKELYGP---- 62
S G R++ LLKE+
Sbjct: 61 GVEKIKIDSRIFTTTSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEVAQTQQVD 120
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L +
Sbjct: 121 LAAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLV 180
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+ APT +EIV VL + K E L + R+A +S RNLRRA+LM EA Q +
Sbjct: 181 RVAAPTTDEIVDVLKGVGKMERLEVKDGLCKRIAVESGRNLRRALLMFEAVYAQNEVVKD 240
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
+ + PDW+ I A I++E SP ++L+VR +LY+LL H IP V+ K L L+
Sbjct: 241 NTPLPPPDWEALISQIADEIMAEHSPARILQVRAKLYDLLTHCIPPTVILKTLTFKLIPK 300
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
D +K+ I+ +A +EHR+H G+KPIFH+EA+VA F+ + ++ D
Sbjct: 301 IDDTIKADVIKWSAFYEHRLHLGNKPIFHLEAFVAKFLRLLESYLMD 347
>gi|326469753|gb|EGD93762.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 174/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + LR L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL AN+ + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ ++I VL KKEG P RLA++S RNLRRA+LM EA Q
Sbjct: 181 LVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP ++L+VR R Y+LL H IP + K L L+
Sbjct: 241 SDNTPIPPPDWEALISVVADEIMAERSPARILQVRARPYDLLTHCIPPTTILKTLAFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK + I+ +A +EHRI GSK IFH+EA+VA FM + ++
Sbjct: 301 PKVDDALKPEVIKWSAFYEHRIKMGSKVIFHLEAFVAKFMRIVESYL 347
>gi|430814355|emb|CCJ28396.1| unnamed protein product [Pneumocystis jirovecii]
Length = 351
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 178/343 (51%), Gaps = 68/343 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSL++DKYRP +L + FH + + L+ L K DFPHLL Y
Sbjct: 1 MSLFIDKYRPKSLDHMHFHEELSRKLKALAKSSDFPHLLVYGIPGSGKKTRVLATLRELY 60
Query: 42 G-----------------------------------PSGAGKKTR--IMALLKELYGP-- 62
G PS +G R I LLKE+
Sbjct: 61 GSGVEKLKIDQKTFISSSNKKIKINIISSNYHLEFTPSDSGNYDRMVIQDLLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE+DHL+ EAQ ALRRTMEKY RLIL A+S S+++ I+SRC
Sbjct: 121 VDTSAKQRFKVVIINESDHLSGEAQAALRRTMEKYYPNLRLILLASSTSKIMAPIQSRCF 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP EEI ++L + +E ++P + ++A S RNLRRA+LM E +
Sbjct: 181 LVRVSAPKLEEIATILKYVASEEHFSLPDQLCNKIALDSKRNLRRALLMLETIYAKDSNL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ + PDW+ YI A+ II EQ+P K+L+VR LYEL+ H IP ++ K L L+
Sbjct: 241 HENTIVPLPDWETYINQIAESIIQEQTPAKILQVRGMLYELITHCIPPPLILKVLTFNLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ D LK ++I+ A +EHR+ G+K IFH+EA+VA FM +Y
Sbjct: 301 SKIDDILKPETIKWATFYEHRLQLGNKAIFHLEAFVAKFMRIY 343
>gi|242809831|ref|XP_002485455.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716080|gb|EED15502.1| DNA replication factor C subunit Rfc5, putative [Talaromyces
stipitatus ATCC 10500]
Length = 352
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 178/347 (51%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPRSLDSLTYHPELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDQSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ +I +VL + +KE T +R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSELDICAVLRSAAQKENWTQSDALNVRIARESGRNLRRALLMFEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 SDKTPIPPPDWEALISVVADEILAERSPARILQVRERLYDLLTHCIPPTTVLKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK + I+ +A +EHRI GSK IFH+EA+VA FM +Y ++
Sbjct: 301 PKVDDALKPEVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRIYEGYL 347
>gi|392576874|gb|EIW70004.1| hypothetical protein TREMEDRAFT_30209 [Tremella mesenterica DSM
1558]
Length = 341
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 177/340 (52%), Gaps = 68/340 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP L L +H + ++ LR+L GDFPH+LF Y
Sbjct: 1 MSLWVDKYRPRTLDDLHYHTELSSRLRSLSASGDFPHILFYGPSGAGKKTRIMCTLRELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I +LKE+
Sbjct: 61 GPGVEKLRIDQRVFVTPSGRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D LTR+AQ ALRRTMEKY+T RLILCA S S++I IRSRCL
Sbjct: 121 VDLNAKQRFKVVIVNEADALTRDAQAALRRTMEKYMTNMRLILCATSTSKIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP + E+ VL ++ KKE +P + S NLR+A+L+ EA ++Q+
Sbjct: 181 LVRVAAPDNGEMTKVLQHVAKKERFHLPDPACQSITSASGGNLRKALLVFEAMRMQRPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
Q D ++ +PDW+ Y A I+ EQ+ ++LL+VR +LYELL H IP V+ K + E ++
Sbjct: 241 QGDIEVAKPDWETYCAKVADSILQEQTAQRLLDVRGKLYELLSHCIPPTVVLKTISERIV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
D LK + I AA +E R+ GSK I+H+EA+VA M
Sbjct: 301 DKVDDTLKPQIIHWAAYYELRMRMGSKKIYHLEAFVAKVM 340
>gi|308491749|ref|XP_003108065.1| CRE-RFC-3 protein [Caenorhabditis remanei]
gi|308248913|gb|EFO92865.1| CRE-RFC-3 protein [Caenorhabditis remanei]
Length = 370
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 192/365 (52%), Gaps = 91/365 (24%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGD-FPHLLF---------------- 40
M+LWVDKYRP L +DFH +QANHL+ L GD PHLLF
Sbjct: 1 MALWVDKYRPKELIGKDGVDFHLEQANHLKFL--SGDCMPHLLFCGPSGAGKKTRIKCLL 58
Query: 41 ---YG-----------------------------------PSGAGKKTRIMA--LLKELY 60
YG PS G R++ L+KE+
Sbjct: 59 RELYGVGVDKTQLIMKPFTTPSNRKLEIQTVSSNYHVEMTPSDVGIYDRVVVQDLVKEMA 118
Query: 61 GP------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108
V++L E D LTR+AQ LRRTMEKY C++ILC S+S++I ++
Sbjct: 119 QTSQIEASSQKSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPLQ 178
Query: 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168
SRC+ I +PAPT EE+ SVL + +KE L +P ++ ++S+ NLRRAILM EA K++
Sbjct: 179 SRCIIINVPAPTDEEMTSVLMKVIQKEKLEMPQNILQKIVEKSEGNLRRAILMTEAIKME 238
Query: 169 -QYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVL---- 223
+ + QI P+W+IY+++TA+LI+ +Q+ + LL+VR RLYE+L IP N++
Sbjct: 239 NENGISTNAQIPVPEWEIYLQETARLILQKQTSEVLLKVRERLYEVLSRLIPPNIILKVR 298
Query: 224 ------------FKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
F+ LLE LL +C + + + AA EHR+ G K I+H+E +V+SF
Sbjct: 299 IVITASLKSKFNFQKLLEHLLPSCPESIVREVVSEAACSEHRLVMGQKAIYHLEKFVSSF 358
Query: 272 MAMYL 276
M +YL
Sbjct: 359 MDIYL 363
>gi|406859749|gb|EKD12812.1| clamp-loader complex subunit E [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 369
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 182/366 (49%), Gaps = 85/366 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLK-----------------EGDFPHLL---- 39
M+L VDK+RP +L +L +H + ++ LR+L++ GDFPHLL
Sbjct: 1 MALLVDKHRPRSLDQLTYHPELSDRLRSLVRPSSHSSRFFLLTTSQAQSGDFPHLLVYGP 60
Query: 40 ---------------FYGP-----------------------------------SGAGKK 49
YGP S G
Sbjct: 61 SGAGKKTRIVATLKELYGPGVEKIKIDCRVFQTTSNRKLEFNIVSSVYHLEITPSDVGNY 120
Query: 50 TRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95
R++ LLKE+ V+++NE DHLTR+AQ ALRRTMEKY RLIL
Sbjct: 121 DRVVVQDLLKEVAQTQQVDTSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLIL 180
Query: 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNL 155
ANS + +I IRSR L +R+ AP+ EI VL +KEG ++ R+A++S RNL
Sbjct: 181 LANSTANIIAPIRSRTLLVRVAAPSEREICGVLEKSARKEGWSVSAGLNERIARESGRNL 240
Query: 156 RRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLV 215
RRA+LM EA Q + I PDW+ I A I++E SP ++L+VR +LY+LL
Sbjct: 241 RRALLMLEAVHAQNEKITDNTPIPPPDWEALISQVASEIVAEHSPARILQVRAKLYDLLT 300
Query: 216 HSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
H IP + K L L+ D LK+ I+ +A +EHRI G+K IFH+EA+VA FM +
Sbjct: 301 HCIPPTTILKTLTFKLVPLVDDALKADVIKWSAFYEHRIRMGTKVIFHLEAFVAKFMRIV 360
Query: 276 LQFMED 281
++M D
Sbjct: 361 EEWMID 366
>gi|327349013|gb|EGE77870.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis ATCC 18188]
Length = 352
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 176/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP NL L +H + L++L + GDFPHLL +
Sbjct: 1 MALLVDRLRPRNLDALTYHHDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLRELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI L KKEG P R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I PDW+ I A I++E+SP ++L+VR +LY+LL H IP + + L L+
Sbjct: 241 TDDTPIPPPDWEALISLIADEIMAERSPARILQVRAKLYDLLTHCIPPTTILRTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM---YLQFME 280
D LK + I+ AA +EHRI GSK IFH+EA+VA FM + YL +E
Sbjct: 301 PKIDDALKPEVIKWAAFYEHRIKLGSKVIFHLEAFVAKFMRVLESYLMGLE 351
>gi|154281829|ref|XP_001541727.1| activator 1 38 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150411906|gb|EDN07294.1| activator 1 38 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 352
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 177/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + L++L + GDFPHLL +
Sbjct: 1 MALLVDRLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARIFQTTSNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP EI VL KKEG T P R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPAEAEICQVLKLAVKKEGWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I PDW+ I A I++++SP ++L+VR +LY+LL H IP + + L L+
Sbjct: 241 TDDTPIPPPDWEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM---YLQFME 280
D LK + I+ AA +EHRI GSK IFH+EA+VA FM + YL +E
Sbjct: 301 PKIDDALKPEVIKWAAFYEHRIKLGSKVIFHLEAFVAKFMRVLESYLMGLE 351
>gi|315050902|ref|XP_003174825.1| replication factor C subunit 5 [Arthroderma gypseum CBS 118893]
gi|311340140|gb|EFQ99342.1| replication factor C subunit 5 [Arthroderma gypseum CBS 118893]
Length = 352
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 174/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + L+ L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPKTLDALTYHQDLSARLKALAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGNYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL AN+ + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ E+I VL KKEG P RLA++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSEEDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 SDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK + I+ +A +EHRI GSK IFH+EA+VA FM + ++
Sbjct: 301 PKIDDALKPEVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRILESYL 347
>gi|347828635|emb|CCD44332.1| similar to replication factor C (activator 1) 3 [Botryotinia
fuckeliana]
Length = 354
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 178/352 (50%), Gaps = 72/352 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+L VDK+RP +L +L +H +N LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDQLTYHDDLSNRLRSLAQSGDFPHLLLYGPSGAGKKTRIVCTLKELY 60
Query: 42 GP------------------------------------SGAGKKTRIM--ALLKELYGP- 62
GP S G R++ LLKE+
Sbjct: 61 GPAVEKIKIDSRVFALATSSRKLEFNIVSSLYHLEITPSDVGNYDRVVISELLKEVAQTQ 120
Query: 63 -----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
V+++NE D L+R+AQ ALRRTMEKY RLIL ANS S +I IRSR
Sbjct: 121 QVDQSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRT 180
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
L +R+ APT +IV VL K+EG + F R+A++S RNLRRA+LM EA+ Q
Sbjct: 181 LLVRVGAPTEGDIVKVLETSGKREGWGVSKGFLERVAKESGRNLRRALLMYEAAHAQNEV 240
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
+ I PDW+ + A + E +P ++L++R +LY+LL H IP + K L L
Sbjct: 241 IAENTPIPPPDWEALLSTIAHSMTVEHTPAQILKIRAQLYDLLTHCIPATTILKTLTWKL 300
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM---YLQFME 280
+ D LKS ++ AA +EHR G+K IFH+EA+VA FM + +L ME
Sbjct: 301 MPLVDDALKSDIVKWAAFYEHRCKTGTKVIFHLEAFVAKFMRVSEEWLMAME 352
>gi|189198796|ref|XP_001935735.1| replication factor C subunit 5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982834|gb|EDU48322.1| replication factor C subunit 5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 348
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 177/350 (50%), Gaps = 84/350 (24%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP NL+ L +H + ++ LR L + GDFPHLL Y
Sbjct: 1 MALLVDKHRPRNLEALSYHPELSDRLRALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTTTNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLGAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-- 170
+R+ APT EI SVL+ + KKEG R+A+ S RNLR+A+LM EA Q+Y
Sbjct: 181 LVRVAAPTESEICSVLSKVGKKEGWKDVESLNQRIAKDSGRNLRKALLMFEAVHAQKYVP 240
Query: 171 --PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
P ++ QI A+ I+ E+SP++LL+VR LY+LL H I + K L
Sbjct: 241 FLPTRLRAQI------------ARQIVEERSPQRLLQVRASLYDLLSHCIDSTTIIKTLT 288
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
L+ D LK + I+ AA +EHR GSK IFH+EA+VA +M +Y F
Sbjct: 289 WKLIPKTDDALKPEVIKWAAFYEHRCKMGSKQIFHLEAFVAKYMRLYESF 338
>gi|119190365|ref|XP_001245789.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 357
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 175/347 (50%), Gaps = 77/347 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + + L+ L + GDFPHLL Y
Sbjct: 1 MALLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ--- 169
+R+ APT EEI VL K+EG + P R+A++S RNLRRA+LM EA Q+
Sbjct: 181 LVRVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLMFEAVYAQKQVS 240
Query: 170 ----YPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK 225
YP D + PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K
Sbjct: 241 WHSRYPD--DTVVPPPDWEALISLIADEIMAERSPARILQVRARLYDLLTHCIPPTTILK 298
Query: 226 YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
L L++ D LK + I+ +A +EHRI GSK IFH+EA+VA FM
Sbjct: 299 TLTFKLVSKVDDILKPEVIKWSAFYEHRIKMGSKVIFHLEAFVAKFM 345
>gi|397643532|gb|EJK75924.1| hypothetical protein THAOC_02338 [Thalassiosira oceanica]
Length = 376
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 5/224 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ ALRRTMEKY ++CRLILC N+ S+VI +RSRCL IR+ AP+ +
Sbjct: 150 VVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRCLGIRVAAPSDD 209
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV---QQYP--FQIDQQ 177
EI SVL + +KE + + E A+ +A+ S RNLRRA+LM E+ V + P + D
Sbjct: 210 EIASVLKTVSRKENIKLADELAINIARLSSRNLRRALLMLESCYVTTRDESPRELKADTP 269
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
+ DW+ YI A I+ EQSPK L+ R +LYELL++ IP ++ K LL LL D
Sbjct: 270 VPRTDWERYIAMLATGIVKEQSPKSLMAAREKLYELLINCIPAQIILKTLLMELLPVLDD 329
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
+K++ + AA +EHRI GSK IFH+EA++A FMA+Y +++ D
Sbjct: 330 TIKAEVVHWAAFYEHRIALGSKEIFHLEAFIAKFMALYKKYLND 373
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELYG 61
L+VDK+RP+ L +L++H L +L + G PHLL YGPSGAGKKTR+MALL+E++G
Sbjct: 2 LFVDKHRPSRLSQLNYHDTLTQRLTSLAADPGGLPHLLLYGPSGAGKKTRVMALLREVFG 61
>gi|296412902|ref|XP_002836158.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629965|emb|CAZ80349.1| unnamed protein product [Tuber melanosporum]
Length = 351
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 181/349 (51%), Gaps = 71/349 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
L VDK+RP L+ L +H ++ L+ L GDFPHLL YGP
Sbjct: 2 LLVDKHRPRKLEALHYHQGLSSRLKALANSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 61
Query: 44 -----------------------------------SGAGKKTRIM--ALLKELYGP---- 62
S G R++ +LLKE+
Sbjct: 62 GVEKIKIDSRVFMTTTNRKIEFNIVASVYHIEITPSDVGNHDRVIIQSLLKEIGQTQQVD 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I I+SR L I
Sbjct: 122 IAAKQKFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILIANSTANIIAPIKSRTLLI 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+ APT +E+V VL ++ + E + A R+A++S RNLRRA+LM EA Q +
Sbjct: 182 RVAAPTIDEMVGVLKHVAELERFEFSDKLARRVAEESGRNLRRALLMFEALYAQNEVVKD 241
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
+ I PD++ I A ++++ SP ++L VR + Y+LL H IP V+ K L L+A
Sbjct: 242 NTPIPPPDYETLIGQIADELLADHSPARILLVRAKFYDLLTHCIPATVILKLLTFRLVAK 301
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM---YLQFME 280
D LK++ I+ AA +EHRIH GSK IFH+EA+VA F+ + YL ME
Sbjct: 302 IDDVLKAEVIKWAAFYEHRIHLGSKVIFHLEAFVAKFLRILESYLMGME 350
>gi|145346328|ref|XP_001417641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577869|gb|ABO95934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 355
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 156/247 (63%), Gaps = 14/247 (5%)
Query: 43 PSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS G K R + ++KE+ V++L E D L+REAQ LRRTMEKY
Sbjct: 100 PSDCGSKDRYVVQEVIKEMARSRPIDSDGCEGFKVLVLTEVDRLSREAQYGLRRTMEKYS 159
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
+CRL L A S+V+ A++SRCL +R+P P EEI ++L ++ KKE L +PPE A R+A
Sbjct: 160 ASCRLFLIAERPSRVMDALQSRCLPVRVPGPRVEEIENLLHDVAKKEKLELPPELATRVA 219
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
S RN+RRA+L E +V YPF+ Q + DW++YI I++EQSP +LL+VR
Sbjct: 220 TASGRNMRRALLALETCRVNSYPFKPTQAVQTTDWELYINQIGAEILAEQSPARLLQVRG 279
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
RLYEL+V+ IP ++ + L + L+ D ++K + + AA F+ R+ +GSK I H+EA+V
Sbjct: 280 RLYELIVNCIPPEIILQNLAKALMRRVDVEVKHQIVFWAAHFDVRMQRGSKAIMHLEAFV 339
Query: 269 ASFMAMY 275
A FMA+Y
Sbjct: 340 AQFMALY 346
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 3 LWVDKYRPNNLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDK+RP+ L + D + QA HL+ L+ GD PHL FYGPSGAGKKT + +L+E++G
Sbjct: 2 LWVDKHRPHALGECDAINTAQAKHLKLLIANGDCPHLFFYGPSGAGKKTLALGVLREIFG 61
Query: 62 P 62
P
Sbjct: 62 P 62
>gi|226469846|emb|CAX70204.1| Replication factor C 38kD subunit [Schistosoma japonicum]
Length = 302
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 157/293 (53%), Gaps = 68/293 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANH------------------------------LRNLL 30
MSLWVDKY P +L KLD+H KQA + LR L
Sbjct: 1 MSLWVDKYTPTSLGKLDYHKKQAKNLKKLIESSDFPHLLVYGPSGAGKRTRIMCILRELY 60
Query: 31 KEG----DFPHLLFYGPS----------------------GAGKKTRIMALLKELYGP-- 62
G H F PS G + I L+K +
Sbjct: 61 GSGVDKLRMEHHTFTNPSNKKVNLSTVSSNFHLEVNPSDVGIYDRIVIQELIKSMASTAQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L+E DHLTR+AQ ALRRTMEKYI+TCRLIL A S S++I A RSRCL
Sbjct: 121 LDSGQQKDFKVVVLHEADHLTRDAQHALRRTMEKYISTCRLILSAESTSKIISATRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IR+ AP+ +EIV +L N ++EG T+P E A R+A S+RNLRRA+L E ++ Q P
Sbjct: 181 PIRVSAPSTDEIVEILKNTARREGHTMPTELAKRIAIASERNLRRALLFAEVARWQHSPM 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK 225
DQ + PDW+ ++ +TA I++EQSPKK+LEVR RLYELL H IP NV+ +
Sbjct: 241 LPDQSVQLPDWQAFLSETASAILAEQSPKKILEVRNRLYELLCHCIPPNVIMR 293
>gi|325093236|gb|EGC46546.1| activator 1 subunit 5 [Ajellomyces capsulatus H88]
Length = 352
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 177/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + L++L + GDFPHLL +
Sbjct: 1 MALLVDRLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELF 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARIFQTTTNRKLEFNIVSSIYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ EI VL KKE T P R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSEAEICQVLKLAVKKESWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I PDW+ I A I++++SP ++L+VR +LY+LL H IP + + L L+
Sbjct: 241 TDDTPIPPPDWEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM---YLQFME 280
D LK + I+ AA +EHRI GSK IFH+EA+VA FM + YL +E
Sbjct: 301 PKIDDALKPEVIKWAAFYEHRIKLGSKVIFHLEAFVAKFMRVLESYLMGLE 351
>gi|388582655|gb|EIM22959.1| DNA clamp loader [Wallemia sebi CBS 633.66]
Length = 356
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 176/284 (61%), Gaps = 27/284 (9%)
Query: 10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIM--ALLKELYGP----- 62
P+N +KLD + Q+N+ H+ PS G+ RI+ +LKE+
Sbjct: 80 PSN-RKLDVNIVQSNY-----------HIEI-TPSDVGQYDRIIIQDILKEIAQTQQIDA 126
Query: 63 -------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR 115
V+I+NE D L+R+AQ ALRRTMEKY+ R+ILCA + S++I IRSRCL +R
Sbjct: 127 NAKHKFKVVIINEADQLSRDAQAALRRTMEKYMANLRIILCAQTTSKIISPIRSRCLLMR 186
Query: 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQID 175
IPAP E++ VL ++ KKE IP + A ++ +++ NLR+A+L+ EA ++Q F +D
Sbjct: 187 IPAPQPEQMTIVLNHVAKKERFQIPDDVAQQIGKEATGNLRKALLVLEAMRMQSPNFDMD 246
Query: 176 QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC 235
QI +PDW+ Y AK I S+ SP+ LL+VR ++YEL+ H IP ++ K LLE +L
Sbjct: 247 IQIAKPDWQSYTISVAKDITSDPSPEGLLKVRGKVYELITHCIPPTLILKTLLEVILNMV 306
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D +++ I AA +EHR+ +GSK IFH+EA++A M+++ F+
Sbjct: 307 DDSIRADLIYWAAFYEHRMRQGSKQIFHLEAFIAKTMSIHKGFI 350
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSL+VDKYRP +L +LD+H N +R+L + GDFPHLLFYGPSGAG+KTRIM L+EL+
Sbjct: 1 MSLYVDKYRPKSLDELDYHHDITNRIRSLARSGDFPHLLFYGPSGAGRKTRIMCTLRELF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|324520157|gb|ADY47571.1| Replication factor C subunit 3, partial [Ascaris suum]
Length = 354
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 154/224 (68%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E + LTR+AQ ALRRTMEKY TCRLILC S+++VI +RSRC+ IR+ AP+
Sbjct: 131 VVVLMEVEQLTRDAQHALRRTMEKYSATCRLILCCESIAKVIDPLRSRCMAIRVAAPSDH 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+ V V+ +CK E + IP + +++ N+RR +LM EA K Q + +Q + EPD
Sbjct: 191 DAVEVVKVVCKAENVAIPDTAVASVVKKACGNMRRILLMVEAIKAQSCASEENQFLPEPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+++TA++I+ +QS + LL+VR+R+YE + IP +++F LL LL CD +K++
Sbjct: 251 WEVYLKETARMILQQQSAENLLKVRSRIYECISRCIPPSIIFVNLLRELLHYCDGAIKAE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+ AA +EHR+ GSK IFH+EA+VASFM +Y + + + S+L
Sbjct: 311 VVARAAEYEHRLTCGSKAIFHLEAFVASFMDIYHRQLTENASDL 354
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LWVDKYRP+ L +L +H +Q NHL +++K GDFPHLL YGPSGAGKKTRI +L+ELY
Sbjct: 1 MALWVDKYRPHQLSELSYHTEQGNHLASIIKAGDFPHLLIYGPSGAGKKTRIHCILRELY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|225684714|gb|EEH22998.1| replication factor C subunit 5 [Paracoccidioides brasiliensis Pb03]
Length = 352
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 177/351 (50%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL +
Sbjct: 1 MALLVDRLRPRSLDALTYHRELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELF 60
Query: 42 G-----------------------------------PSGAGKKTRIMA--LLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GTGVEKIKIDARVFQTSTNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY R+IL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL KKE P R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D I PDW+ I A I++E+SP ++L+VR +LY+LL H IP + K L L+
Sbjct: 241 TDDTPIPPPDWEALISVIADEIMAERSPARILQVRAKLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM---YLQFME 280
D LK + I+ +A +EHRI GSK IFH+EA+VA FM + YL +E
Sbjct: 301 PKMDDALKPEVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRVLESYLMGLE 351
>gi|393221474|gb|EJD06959.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 355
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 176/347 (50%), Gaps = 68/347 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFH------------------------------CKQANHLRNLL 30
M+LWVDKYRP L L +H + A LR L
Sbjct: 1 MTLWVDKYRPRTLDDLHYHQGLSARLRSLAASGDFPHMLFYGPSGAGKKTRIACTLRQLF 60
Query: 31 KEG----DFPHLLFYGPS----------------------GAGKKTRIMALLKELYGP-- 62
G +F PS G + I +LKE+
Sbjct: 61 GSGVEKLKIDQRVFLTPSKRKLDVNIVQSNFHIEITPSDVGIYDRVVIQEILKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I IRSRCL
Sbjct: 121 VDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSKLIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EE+ + L + K+E +PP+ A +A+ + NLR+A+L+ EA K+Q
Sbjct: 181 LMRVAAPTEEEVQTCLRYVAKREKFDLPPDAACEIAEDAGGNLRKAVLVLEALKMQSPDL 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I +PDW+ Y A LI+ EQ+P +++EVR + YELL H IP V+ K + + ++
Sbjct: 241 SGPLTIAKPDWETYCHKVADLIVQEQTPARVMEVRAKFYELLSHCIPATVVLKTVADRVV 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D +K+ + AA +E R+ +G+K IFH+EA+V M++Y FM
Sbjct: 301 ERVDEAIKADVMHWAAFYEVRMRQGNKKIFHLEAWVIKVMSIYKHFM 347
>gi|156044344|ref|XP_001588728.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980]
gi|154694664|gb|EDN94402.1| hypothetical protein SS1G_10275 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 354
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 175/348 (50%), Gaps = 69/348 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+L VDK+RP +L +L +H ++ LR L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDQLTYHDDLSDRLRALAQSGDFPHLLLYGPSGAGKKTRIVCTLKELY 60
Query: 42 G------------------------------------PSGAGKKTRIM--ALLKELYGP- 62
G PS G R++ LLKE+
Sbjct: 61 GGSVEKIKIDSRVFQLSSSSRKLEFNIVSSLYHLEITPSDVGNYDRVVISELLKEVAQTQ 120
Query: 63 -----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111
V+++NE D L+R+AQ ALRRTMEKY RLIL ANS S +I IRSR
Sbjct: 121 QVDQSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSGNVRLILVANSTSGIIGPIRSRT 180
Query: 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
L +R+ APT +IV VL K+EG + F R+A++S RNLRRA+LM EA+ Q
Sbjct: 181 LLVRVGAPTEGDIVKVLEKSGKREGWGVSRGFLERVAKESGRNLRRALLMYEAAHAQNET 240
Query: 172 FQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL 231
I PDW+ + A + E +P ++L++R +LY+LL H IP + K L L
Sbjct: 241 INDTTPIPPPDWEALLSTIAHSMTIEHTPAQILKIRAQLYDLLTHCIPATTILKTLTWKL 300
Query: 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ D LKS ++ AA +EHR G+K IFH+EA+VA FM + +++
Sbjct: 301 MPLVDDALKSDIVKWAAFYEHRCKTGTKVIFHLEAFVAKFMRVSEEWL 348
>gi|452989910|gb|EME89665.1| hypothetical protein MYCFIDRAFT_57005 [Pseudocercospora fijiensis
CIRAD86]
Length = 357
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 135/213 (63%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSRCL +R+ APT E
Sbjct: 131 VVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRCLLVRVAAPTEE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI VL + K E T R+A++S RNLRRA+LM EA Q I PD
Sbjct: 191 EICEVLAKVGKDERYTACQPLERRIAKESKRNLRRALLMFEAVHAQNENVSEKTPIPPPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ I AK I+ E+SP ++L VR +LY+LL H IP + K L L+ D LK +
Sbjct: 251 WEALIEVIAKEIVEERSPARILHVRAKLYDLLTHCIPATTILKTLTFKLMPKLDDTLKPE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
++ AA +EHRIH GSK IFH+EA+VA FM +Y
Sbjct: 311 IVKWAAFYEHRIHMGSKVIFHLEAFVAKFMRLY 343
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+L VDK+RP L L +H + + LR L GDFPHLL YGPSGAGKKTRI A L+ LY
Sbjct: 1 MALLVDKHRPRTLDTLSYHPELSERLRALANSGDFPHLLIYGPSGAGKKTRITATLRALY 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPGV 64
>gi|395332196|gb|EJF64575.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 360
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 147/217 (67%), Gaps = 1/217 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+++++E D LTR+AQ ALRRTMEKY+T RLILCANS S++I IRSRCL +R+ AP+ E
Sbjct: 131 LVVIHEADSLTRDAQAALRRTMEKYMTNMRLILCANSTSKLIAPIRSRCLLMRVAAPSEE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ-QIVEP 181
E+ +VL + K+EG IP + A +AQ ++ N+R+A+L+ EA K+Q I +P
Sbjct: 191 EMRAVLDYVGKREGFAIPDDTARLIAQDANGNVRKALLVLEALKMQNTDLSSSALSIAKP 250
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW+ Y A +II EQSP +++EVR +LYELL H IP +V+ K + E ++ D LK+
Sbjct: 251 DWETYCHKVADMIIQEQSPARVMEVRAKLYELLSHCIPPSVVIKTIAEKVVDQVDDALKA 310
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ AA++E R+ G+K IFH+EA+V M++Y F
Sbjct: 311 DIMHWAAIYEARMRVGNKKIFHLEAWVVKVMSLYKHF 347
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP +L +L +H + L+ L GDFPH+LFYGP+GAGKKTRI L EL+
Sbjct: 1 MSLWVDKHRPRSLDQLHYHHALSARLKALAASGDFPHMLFYGPTGAGKKTRIAGTLLELF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|388517395|gb|AFK46759.1| unknown [Lotus japonicus]
Length = 201
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 136/201 (67%)
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEKY CRLILC NS S+V AIRSRCL IRI AP+ E+IV V+ I KKEGL P F
Sbjct: 1 MEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQFPSGF 60
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL 203
A R+A++S+RNLRRAIL E +VQQYPF Q I DW+ YI + A I+ EQSPK+L
Sbjct: 61 AARIAEKSNRNLRRAILSFETCRVQQYPFTNRQTIPPMDWEEYISEIASDIMKEQSPKRL 120
Query: 204 LEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFH 263
+VR +LYELL++ IP ++ K LL LL D++LK + AA +EHR+ G K IFH
Sbjct: 121 FQVRGKLYELLINCIPPEMILKRLLFELLRKLDAELKHEVCLWAAYYEHRMRLGQKAIFH 180
Query: 264 IEAYVASFMAMYLQFMEDTLS 284
IEA+VA FM++Y F+ T
Sbjct: 181 IEAFVAKFMSVYKSFLIATFG 201
>gi|303315063|ref|XP_003067539.1| Activator 1 38 kDa subunit, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107209|gb|EER25394.1| Activator 1 38 kDa subunit, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 344
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 171/340 (50%), Gaps = 76/340 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + + L+ L + GDFPHLL Y
Sbjct: 1 MALLVDRQRPRTLDALTYHHELSARLKALAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGTYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EEI VL K+EG + P R+A++S RNLRRA+L+ + +
Sbjct: 181 LVRVAAPTAEEICQVLKLSGKREGWSEAPGLNKRIAKESGRNLRRALLIEKVTD------ 234
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D + PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 235 --DTVVPPPDWEALISLIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTFKLV 292
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ D LK + I+ +A +EHRI GSK IFH+EA+VA FM
Sbjct: 293 SKVDDILKPEVIKWSAFYEHRIKMGSKVIFHLEAFVAKFM 332
>gi|348583113|ref|XP_003477319.1| PREDICTED: replication factor C subunit 3-like [Cavia porcellus]
Length = 288
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 125/164 (76%)
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
I VL+ +CKKEGL++P + A R+A++S RNLR+A+LMCEA +VQQYPF DQ+I E DW
Sbjct: 124 ICHVLSTVCKKEGLSLPSQLAQRIAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDW 183
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS 243
++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 184 EVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEV 243
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
+MAA +EHR+ G+K I+H+EA+VA FMA+Y +FMED L +
Sbjct: 244 TQMAAYYEHRLQLGTKAIYHLEAFVAKFMALYKKFMEDGLEGMM 287
>gi|402224926|gb|EJU04988.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 359
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 151/220 (68%), Gaps = 1/220 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE D L+R+AQ ALRRTMEKY+ R+IL AN+ S++I I+SRCL +R+ APT E
Sbjct: 131 VVVINEADQLSRDAQAALRRTMEKYMANLRIILVANNTSKLIAPIKSRCLLVRVAAPTLE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ-QIVEP 181
E+ +VL + KKE + +PPE A ++ ++ NLRRA+L+ EA K+Q ++ +I +P
Sbjct: 191 EMETVLGYVAKKERVDLPPEVASKIGAEAVGNLRRALLVLEALKMQHPDLNAEKLEIAKP 250
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW+ Y A LI+ +QS +++L+VR++LYEL+ H IP +++ K L + ++ D LK+
Sbjct: 251 DWETYCAKVADLIVEQQSAQRILDVRSKLYELISHCIPPSLIIKTLADRVIERVDEALKA 310
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
+ AA +EHR+ +GSK IFH+EA+V M++Y F D
Sbjct: 311 DIMHWAAFYEHRMRQGSKKIFHLEAWVVKVMSLYKHFTHD 350
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 48/61 (78%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L LD+H + + LR+L GDFPH+LFYGPSGAGKKTR+ +L+EL+
Sbjct: 1 MSLWVDKYRPRTLDDLDYHSELSERLRSLASSGDFPHMLFYGPSGAGKKTRVACVLRELF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|389750127|gb|EIM91298.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 149/217 (68%), Gaps = 1/217 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I IRSRCL +R+ AP HE
Sbjct: 131 VVVINEADTLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIRSRCLLMRVAAPNHE 190
Query: 123 EIVSVLTNICKKEGL-TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
E+ +VL ++ + G+ IP E A + + S+ N+R+AIL+ EA K+Q + I +P
Sbjct: 191 EMRTVLNHVATRAGIPKIPQEAADEIVRDSNGNMRKAILVLEALKMQTPSLEGPLAIAKP 250
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW+ Y A +IISEQSP+++++VR +LYELL H IP V+ K + + L+ D LK+
Sbjct: 251 DWETYCHKVADMIISEQSPQRVMDVRAKLYELLSHCIPPTVIIKTIADRLVDRVDEGLKA 310
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ AA++E+R+ G+K IFH+EA+V M++Y F
Sbjct: 311 DIMHWAAVYENRMRLGNKKIFHLEAWVVKVMSLYKHF 347
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVD YRP +L L +H + L++L GDFPH+LFYGPSGAGKKTRI L++L+
Sbjct: 1 MSLWVDCYRPKSLDDLHYHEGLSTRLKSLAASGDFPHMLFYGPSGAGKKTRIACTLRQLF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|340057395|emb|CCC51740.1| putative ATPase [Trypanosoma vivax Y486]
Length = 349
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 178/344 (51%), Gaps = 72/344 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDKYRP +L ++ + + + LR L + D PHLLF YGP
Sbjct: 2 LWVDKYRPKSLVDVELYPELTSMLRRLAESQDLPHLLFYGPSGTGKKTRCMAVLEHVYGP 61
Query: 44 S-----------------------------------GAGKKTRI--MALLKE-------- 58
S AG R+ M +++E
Sbjct: 62 SVYSLRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRVVVMQMIRETAQTVPLH 121
Query: 59 ------LYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
+ V++LNE D + R AQ ALRRTMEKY+ TCRLIL NS S++I +RSRCL
Sbjct: 122 TTTSNGVKYKVVVLNEVDKMGRAAQHALRRTMEKYVATCRLILICNSTSRLIAPLRSRCL 181
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
+R+P+ + E I V+ +C+KEG +P P F + Q+SD NLRRA L+ EA+ +
Sbjct: 182 AVRVPSHSQENITKVIQTVCEKEGRPMPSPAFLATVTQRSDGNLRRAQLILEAAAATKVE 241
Query: 172 FQ-IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
F I +PDW +++ + A I++EQ+PKKL +VR + Y+LL + V+ + +LE
Sbjct: 242 FSGSGADIPQPDWCVFLTEIAHDILTEQTPKKLHDVRGKFYDLLGQCVSGEVILRGVLEA 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
LL + + L+ + + +AA ++H + G+KP+ H+EA+ A M +
Sbjct: 302 LLTSINPKLRGEVVALAAQYDHNMKLGTKPVLHLEAFAAGVMKL 345
>gi|346972442|gb|EGY15894.1| replication factor C subunit 5 [Verticillium dahliae VdLs.17]
Length = 350
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 151/255 (59%), Gaps = 17/255 (6%)
Query: 43 PSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS G R++ LLKE+ V+++NE DHLTR+AQ ALRRTMEKY
Sbjct: 95 PSDVGNYDRVVVQDLLKEVAQTQQVDQAARQRFKVVVINEADHLTRDAQAALRRTMEKYS 154
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
RLIL ANS + +I IRSR L +R+ APTH EI VL ++EG + +R+A
Sbjct: 155 PNLRLILLANSTANIIAPIRSRTLLVRVAAPTHAEICDVLGQSAEREGWPVAKGLHMRIA 214
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
Q+S RNLRRA+LM EA Q +I PDW+ I AK I+ E +P ++L+VR
Sbjct: 215 QESGRNLRRALLMYEAVHAQNEKVTDATRIPPPDWEALIGQIAKEIMEEHTPARILQVRA 274
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+LY+LL H IP + K L L+A D LK + I+ +A +EHRI G+K IFH+EA+V
Sbjct: 275 KLYDLLTHCIPATTILKTLTFKLVAMIDDALKPEVIKWSAYYEHRIRMGTKVIFHLEAFV 334
Query: 269 ASFM---AMYLQFME 280
A FM +YL M+
Sbjct: 335 AKFMRIIEIYLMSMD 349
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+L VDK+RP +L L +H + ++ L +L + P L YGPSGAGKKTRI+A LKELY
Sbjct: 1 MALIVDKHRPKSLDALTYHPELSDRLSSLRRLP--PTSLVYGPSGAGKKTRIVATLKELY 58
Query: 61 G 61
G
Sbjct: 59 G 59
>gi|302675274|ref|XP_003027321.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8]
gi|300101007|gb|EFI92418.1| hypothetical protein SCHCODRAFT_61292 [Schizophyllum commune H4-8]
Length = 356
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 154/250 (61%), Gaps = 14/250 (5%)
Query: 43 PSGAGKKTRIM--ALLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS AG R++ LLKE+ V+++NE D L+R+AQ ALRRTMEKY+
Sbjct: 97 PSEAGNYDRVVIQELLKEIAQTQQVDLNAKQRFKVVVINEADGLSRDAQAALRRTMEKYM 156
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
+ R+ILCANS S++I I+SRCL +R+ AP E++SVL + ++ G +PPE ++
Sbjct: 157 SNLRIILCANSTSRLIAPIKSRCLLMRVAAPNAGEMMSVLDYVARRVGFDLPPEAGQQIV 216
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
S NLR+AIL+ EA K+Q I +PDW+ Y A LI++EQSP +++EVR
Sbjct: 217 ADSGGNLRKAILVLEALKMQSPDLTGPLAIAKPDWETYCHKVADLIVAEQSPARVMEVRA 276
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+ YELL H IP V+ K + E ++ D LK+ + AA+FE+R+ GSK IFH+EA+V
Sbjct: 277 KFYELLSHCIPPTVILKTVAERVVERVDESLKADVMHWAAIFENRMRIGSKKIFHLEAWV 336
Query: 269 ASFMAMYLQF 278
M++ F
Sbjct: 337 VKVMSLQKHF 346
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 49/62 (79%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVD+YRP +L +L +H + L++L GDFPH+LFYGPSGAGKKTRI +LKEL+
Sbjct: 1 MSLWVDQYRPRSLSELHYHQGLSKRLQSLASSGDFPHILFYGPSGAGKKTRISCVLKELF 60
Query: 61 GP 62
GP
Sbjct: 61 GP 62
>gi|240275872|gb|EER39385.1| activator 1 38 kDa subunit [Ajellomyces capsulatus H143]
Length = 325
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 160/274 (58%), Gaps = 16/274 (5%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNL--LKEGDFPHLLFYGPSGAGKKTRIMALLKE 58
M+L VD+ RP +L L +H + L++L LKE +T+ + L +
Sbjct: 1 MALLVDRLRPRSLDALTYHNDLSARLKSLELLKEV--------------AQTQQVDLSAK 46
Query: 59 LYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPA 118
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSR L +R+ A
Sbjct: 47 QRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAA 106
Query: 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQI 178
P+ EI VL KKE T P R+A++S RNLRRA+LM EA Q D I
Sbjct: 107 PSEAEICQVLKLAVKKESWTEAPGLNKRIAKESGRNLRRALLMLEAIYAQNEKVTDDTPI 166
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD 238
PDW+ I A I++++SP ++L+VR +LY+LL H IP + + L L+ D
Sbjct: 167 PPPDWEALISLIADEIMADRSPGRILQVRAKLYDLLTHCIPPTTILRTLTFKLIPKIDDA 226
Query: 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
LK + I+ AA +EHRI GSK IFH+EA+VA FM
Sbjct: 227 LKPEVIKWAAFYEHRIKLGSKVIFHLEAFVAKFM 260
>gi|378734260|gb|EHY60719.1| replication factor C subunit 5 [Exophiala dermatitidis NIH/UT8656]
Length = 354
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 173/349 (49%), Gaps = 70/349 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+L VDK RP +L L +H ++ L +L DFPHLLF Y
Sbjct: 1 MALLVDKLRPRSLDALTYHKDLSDRLASLAASADFPHLLFYGPSGAGKKTRILATLRALY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GSGVEKIKIDARVFTTSSNRKLEFNIVSSVYHLEITPSDVGSYDRVVIQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D L+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADGLSRDAQAALRRTMEKYSANVRLILVANSTAGIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT EI VL KKE + P R+A++S+RNLR+A+LM EA Q
Sbjct: 181 LVRVAAPTETEICDVLAKAAKKENWKVIPALNERIAKESNRNLRKALLMFEAVYAQNPEP 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL- 231
I PDW+I + A+ I+ E++P +L R +LY+LL H IP +++ K L L
Sbjct: 241 NEKTPISPPDWEILVEQIARDIVRERTPAMILATRAKLYDLLTHCIPASMVLKTLCFKLC 300
Query: 232 -LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
L D LK + + A+ +EHR+ GSK IFH+EA+VA FM ++ ++
Sbjct: 301 NLPEVDDSLKPEVVRWASFYEHRVRLGSKVIFHLEAFVAKFMRVFEGYL 349
>gi|392564235|gb|EIW57413.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 358
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 166/283 (58%), Gaps = 27/283 (9%)
Query: 14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTR--IMALLKELYGP--------- 62
+KLD + Q+N+ H+ F PS G R I +LKE+
Sbjct: 80 RKLDVNIVQSNY-----------HIEF-TPSEVGNYDRLIIQDILKEIAQTQQVDLNAKQ 127
Query: 63 ---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
V++++E D LTR+AQ ALRRTMEKY++ RLILCANS S++I IRSRCL +R+ AP
Sbjct: 128 KFKVVVIHEADALTRDAQAALRRTMEKYMSNMRLILCANSTSKLIAPIRSRCLLMRVAAP 187
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ-QI 178
+ EE+ +VL + K EG IP + +A + NLR+AIL+ EA K+Q + I
Sbjct: 188 STEEMQTVLDFVAKHEGFAIPEDTVSLIAADAGGNLRKAILVLEALKMQNPDLSVSALSI 247
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD 238
+PDW+ Y A +I+ EQSP +++EVR +LYELL H IP ++ K + + ++ D
Sbjct: 248 AKPDWETYCHKVADMIVQEQSPARVMEVRAKLYELLSHCIPPTIVLKTIADRVVEQVDEA 307
Query: 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
LK+ + AA++E R+ G+K IFH+EA+V M++Y F D
Sbjct: 308 LKADIMHWAAIYEARMRIGNKKIFHLEAWVVKVMSLYKHFFYD 350
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP +L L +H ++ L+ L GDFPH+LFYGPSGAGKKTRI L EL+
Sbjct: 1 MSLWVDKWRPRSLDDLHYHHGLSDRLKALAASGDFPHMLFYGPSGAGKKTRIAGTLLELF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|390348565|ref|XP_001196153.2| PREDICTED: replication factor C subunit 3-like [Strongylocentrotus
purpuratus]
Length = 180
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 122/163 (74%)
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
I +L N+CKKEGL +P E A R+A++S+RNLR+AIL CEA KVQQYPF DQ I E DW
Sbjct: 16 ITQILQNVCKKEGLNLPSELAKRIAEKSERNLRKAILSCEACKVQQYPFSADQDIPEADW 75
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS 243
++++RDTA II +QSP++LLEVR R+YELL H IP +V+ K LL LL NCD LK++
Sbjct: 76 EVFLRDTANHIIQQQSPRQLLEVRGRMYELLTHCIPADVILKGLLRELLKNCDGQLKTQV 135
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
AA +EHR+ +G+K I+H+EA+VA FM++Y +F+E+ +
Sbjct: 136 THQAAFYEHRMQQGNKAIYHLEAFVAKFMSIYKRFLEEGFEAM 178
>gi|19112438|ref|NP_595646.1| DNA replication factor C complex subunit Rfc5 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913232|sp|O94697.1|RFC5_SCHPO RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5
gi|4455787|emb|CAB36876.1| DNA replication factor C complex subunit Rfc5 (predicted)
[Schizosaccharomyces pombe]
Length = 358
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 169/345 (48%), Gaps = 72/345 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
LW+D+YRP L LD+H + + L +L +FPHLL YGP
Sbjct: 2 LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
Query: 44 -----------------------------------SGAGKKTRIM--ALLKELYGP---- 62
S G R++ LLK++
Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++N D LTR+AQ ALRRTMEKY RLIL ANS S++I IRSR L +
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA----SKVQQY 170
R+ APT EEI+ V++ I +GL P +A DRNLR+AIL+ E S +
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241
Query: 171 PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
Q+ PDW+ +I+ ++ EQSP ++L VR+ LY+LL H IP + K LL
Sbjct: 242 LIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
L+ D+ L I+ AA +EHR G+K IFH+EA+VA FM +Y
Sbjct: 302 FLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
>gi|331236101|ref|XP_003330710.1| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309700|gb|EFP86291.1| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 360
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 142/222 (63%), Gaps = 6/222 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++++ D LT +AQ ALRRTME++ +T RLILCA S +++I IRSRCL +R+ AP E
Sbjct: 131 VVVIHGADELTNDAQAALRRTMERHTSTMRLILCATSTAKIIGPIRSRCLLLRVGAPNPE 190
Query: 123 EIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ---- 176
+I VL N+ K + +P E A+ +A S+ NLRRA+L +A + Q F +
Sbjct: 191 QIAQVLNNVSNKASFSTSLPDETAMAIALSSNGNLRRALLTLDAVRAQDETFSKSRTSPD 250
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
I PDW++YI A +I EQSP KLLE R LYELLVH IP +V+ L +GLL D
Sbjct: 251 SIPRPDWEVYIDKLAGVIAKEQSPDKLLEARAMLYELLVHLIPPSVVIVQLAKGLLTRVD 310
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
L+ + I AA +EHR+ G+KPIFH+EA+VA M++Y +
Sbjct: 311 DALRPEIIHWAAWYEHRLRLGNKPIFHLEAFVAKVMSLYKNY 352
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 47/62 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSL VDKYRP L++LD+H ++ +R L + DFPH LFYGPSGAGKKTRI A L EL+
Sbjct: 1 MSLLVDKYRPKKLEELDYHQGLSDRIRALARTADFPHCLFYGPSGAGKKTRIAATLTELF 60
Query: 61 GP 62
GP
Sbjct: 61 GP 62
>gi|190348623|gb|EDK41109.2| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 175/357 (49%), Gaps = 86/357 (24%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +L FH N+LR L GDFPHLL Y
Sbjct: 1 MSLWVDKYRPRSLDQLSFHDSITNNLRALASTGDFPHLLVYGPSGSGKKTRIYSTLHELY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GPS G + I LLK++
Sbjct: 61 GPSVEKLKIDVKKFTTTSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 63 ---------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI 107
V+++NE D L+R+AQ ALRRTMEKY + RLI+ N+ S +I I
Sbjct: 121 VDFTAKASSPRHKFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISPI 180
Query: 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAIL 160
+SR L +RIPAPT EI SVLT I KE + P +F +LA +RN+RRA+L
Sbjct: 181 KSRTLLVRIPAPTTAEIASVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRALL 240
Query: 161 MCEASKVQQYPFQID---QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHS 217
E +Q I+ Q IV+ DW++ I + A+ I ++++ L +VR LYELL H
Sbjct: 241 CFETISMQTETININNPKQAIVDLDWEVIISNLAQSIYTQRTVANLAKVRVVLYELLSHC 300
Query: 218 IPVNVLFKYLLEGL--LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
IP V+ K LL L LAN DS L + +AA+F+ R+ G K IFH+E +VA M
Sbjct: 301 IPPAVILKTLLFDLIKLANKDS-LTRDLVGVAAVFDERLSLGQKSIFHLEGFVAKAM 356
>gi|71747956|ref|XP_823033.1| replication factor C subunit 5 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832701|gb|EAN78205.1| replication factor C, subunit 5, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261332892|emb|CBH15887.1| ATPase, putative [Trypanosoma brucei gambiense DAL972]
Length = 349
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 173/344 (50%), Gaps = 72/344 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDKYRP L +D + + L+ L + D PHLL YGP
Sbjct: 2 LWVDKYRPRTLDDVDLYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLQQVYGP 61
Query: 44 S-----------------------------------GAGKKTRI--MALLKELYGPV--- 63
S AG R+ M +++E+ V
Sbjct: 62 SVYSLRLEHKSVQVTDSKVVDIATLSSPHHIDINPSDAGNHDRVVVMQMIREIAQTVPLQ 121
Query: 64 -----------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++LNE D + R AQ ALRRTMEKY+ TCRL+L NS S++I +RSRCL
Sbjct: 122 SGTPGAAKYKVVVLNEVDKMGRAAQHALRRTMEKYMATCRLVLICNSTSRLIAPLRSRCL 181
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
+R+P+ + E I V+ +C+KEG P P F L+ QS+ NLRRA LM EA+ + +
Sbjct: 182 AVRVPSHSQENITKVIRTVCEKEGRMPPSPAFLAALSNQSEGNLRRAQLMLEAAAMTKVD 241
Query: 172 FQ-IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
F I + DW++++ + A I++EQ+PKKL E+R + Y+LL I V+ + +LE
Sbjct: 242 FSGSGANIPQADWQVFLEEIANDILTEQTPKKLFEIRGKFYDLLGQCISGEVIMRGVLEA 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
LL + ++ + +AA ++H + G+KPI H+EA+ + M +
Sbjct: 302 LLNSVKPAMRPAVVSLAAKYDHNMKLGTKPILHLEAFASGVMQL 345
>gi|71666770|ref|XP_820341.1| replication factor C, subunit 5 [Trypanosoma cruzi strain CL
Brener]
gi|70885681|gb|EAN98490.1| replication factor C, subunit 5, putative [Trypanosoma cruzi]
gi|407849659|gb|EKG04335.1| replication factor C, subunit 5, putative [Trypanosoma cruzi]
Length = 349
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 180/347 (51%), Gaps = 72/347 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDKYRP +L +++ + + L+ L + D PHLL YGP
Sbjct: 2 LWVDKYRPKSLVEVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLHHVYGP 61
Query: 44 S-----------------------------------GAGKKTRI--MALLKELYGPV--- 63
S AG R+ M +++E+ V
Sbjct: 62 SVYSLRLEHRSVQVTDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVSLQ 121
Query: 64 -----------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++LNE D + R AQ ALRRTMEKY++TCRL+L NS S++I +RSRCL
Sbjct: 122 SSTSNGVKYKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLRSRCL 181
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
+R+P+ + E + V+ +C++E +P PEF + Q+S+ NLRRA+LM EA+ + +
Sbjct: 182 AVRVPSHSKENLTKVIRGVCERENRPLPSPEFMATVTQRSEGNLRRALLMVEAAAMTKVD 241
Query: 172 FQID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
F + I +PDW++++ + A I+SEQ+PKKL E+R + Y LL + ++ + +LE
Sbjct: 242 FSGNGADIPQPDWRVFLDEIANDILSEQTPKKLHEIRGKFYNLLGQCVSGELILRLVLEK 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
L++ D L+ + +AA ++H + G+K I H+EA+ A M + Q
Sbjct: 302 LMSAVDPALRRPLVALAAQYDHNMKLGTKTIVHLEAFAAGVMQLLKQ 348
>gi|225563283|gb|EEH11562.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 608
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 144/244 (59%), Gaps = 14/244 (5%)
Query: 43 PSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS G R++ LLKE+ V+++NE DHLTR+AQ ALRRTMEKY
Sbjct: 353 PSDVGNYDRVVVQELLKEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYS 412
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
RLIL ANS + +I IRSR L +R+ AP EI VL KKEG T P R+A
Sbjct: 413 PNLRLILLANSTANIIAPIRSRTLLVRVAAPAEAEICQVLKLAVKKEGWTEAPGLNKRIA 472
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
++S RNLRRA+LM EA Q D I PDW+ I A I++++SP ++L+VR
Sbjct: 473 KESGRNLRRALLMLEAIYAQNEKVTDDTPIPPPDWEALISLIADEIMADRSPGRILQVRA 532
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+LY+LL H IP + + L L+ D LK + I+ AA +EHRI GSK IFH+EA+V
Sbjct: 533 KLYDLLTHCIPPTTILRTLTFKLIPKIDDALKPEVIKWAAFYEHRIKLGSKVIFHLEAFV 592
Query: 269 ASFM 272
A FM
Sbjct: 593 AKFM 596
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
+++ RP +L L +H + L++L + GDFPHLL YGPSGAGKKTRI+A LKEL+GP +
Sbjct: 261 IEQLRPRSLDALTYHNDLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGPGV 320
>gi|401881379|gb|EJT45679.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 2479]
Length = 325
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 165/323 (51%), Gaps = 81/323 (25%)
Query: 18 FHCKQANHLRNLLKEGDFPHLLF-------------------YGPS-------------- 44
+H + + L++L GDFPH+LF YGP
Sbjct: 3 YHSELSERLKSLASSGDFPHILFYGPSGAGKKTRIMATLRELYGPGVEKLKIDQRVFVTP 62
Query: 45 -----------------------GAGKKTRIMALLKELYGP------------VIILNET 69
G + I +LKE+ V+++NE
Sbjct: 63 SNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVDLNAKQKFKVVVINEA 122
Query: 70 DHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLT 129
D L+R+AQ ALRRTMEKY+T RLI+CANS S++I IRSRCL +R+ APT +E+
Sbjct: 123 DSLSRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDEV----- 177
Query: 130 NICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRD 189
KKE T+PP + + + +D NLR+A+L+ EA ++Q D + +PDW++Y
Sbjct: 178 --AKKERFTLPPSASDAIIEAADGNLRKALLVMEAMRMQNPDLNGDVDVAKPDWELYCAK 235
Query: 190 TAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAM 249
A+ I+ EQSP++LL++R ++YELL H IP V+ K + +GL+A D LK + AA
Sbjct: 236 IAESIMQEQSPQRLLDIRGKIYELLSHCIPPAVVLKTIADGLVARVDDPLKPVVVHWAA- 294
Query: 250 FEHRIHKGSKPIFHIEAYVASFM 272
H GSK IFHIEA++A M
Sbjct: 295 -----HYGSKKIFHIEAFIAKIM 312
>gi|406701717|gb|EKD04831.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 8904]
Length = 325
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 165/323 (51%), Gaps = 81/323 (25%)
Query: 18 FHCKQANHLRNLLKEGDFPHLLF-------------------YGPS-------------- 44
+H + + L++L GDFPH+LF YGP
Sbjct: 3 YHSELSERLKSLASSGDFPHILFYGPSGAGKKTRIMATLRELYGPGVEKLKIDQRVFVTP 62
Query: 45 -----------------------GAGKKTRIMALLKELYGP------------VIILNET 69
G + I +LKE+ V+++NE
Sbjct: 63 SNRKLDVNVVQSNYHIELTPSDVGMYDRVVIQDILKEIAQTQQVDFNAKQKFKVVVINEA 122
Query: 70 DHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLT 129
D L+R+AQ ALRRTMEKY+T RLI+CANS S++I IRSRCL +R+ APT +E+
Sbjct: 123 DSLSRDAQAALRRTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDEV----- 177
Query: 130 NICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRD 189
KKE T+PP + + + +D NLR+A+L+ EA ++Q D + +PDW++Y
Sbjct: 178 --AKKERFTLPPSASDAIIEAADGNLRKALLVMEAMRMQNPDLNGDVDVAKPDWELYCAK 235
Query: 190 TAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAM 249
A+ I+ EQSP++LL++R ++YELL H IP V+ K + +GL+A D LK + AA
Sbjct: 236 IAESIMQEQSPQRLLDIRGKIYELLSHCIPPAVVLKTIADGLVARVDDPLKPVVVHWAA- 294
Query: 250 FEHRIHKGSKPIFHIEAYVASFM 272
H GSK IFHIEA++A M
Sbjct: 295 -----HYGSKKIFHIEAFIAKIM 312
>gi|295674217|ref|XP_002797654.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280304|gb|EEH35870.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 363
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 131/210 (62%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE DHLTR+AQ ALRRTMEKY R+IL ANS + +I IRSR L +R+ APT
Sbjct: 131 VVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIISPIRSRTLLVRVAAPTEA 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI VL KKE P R+A++S RNLRRA+LM EA Q D I PD
Sbjct: 191 EICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEKVTDDTPIPPPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ I A I++E+SP ++L+VR +LY+LL H IP + K L L+ D LK
Sbjct: 251 WEALISVIADEIMAERSPARILQVRAKLYDLLTHCIPPTTILKTLTFKLIPKIDDALKPD 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
I+ AA +EHRI GSK IFH+EA+VA FM
Sbjct: 311 VIKWAAFYEHRIKLGSKVIFHLEAFVAKFM 340
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+L VD+ RP NL L +H + L++L + GDFPHLL YGPSGAGKKTRI+A LKEL+
Sbjct: 1 MALLVDRLRPRNLDALTYHRGLSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|358058719|dbj|GAA95682.1| hypothetical protein E5Q_02339 [Mixia osmundae IAM 14324]
Length = 387
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 8/221 (3%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE D L+R+AQ ALRRTMEKY T RLILCANS S++I IRSRCL +R+ APT +
Sbjct: 158 VVVINEADLLSRDAQSALRRTMEKYTTNLRLILCANSTSKIIGPIRSRCLLLRVGAPTDD 217
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-------ID 175
E+V+V+ ++ KKE IP AL +AQ + NLRRA+L EA Q FQ
Sbjct: 218 EMVNVINHVAKKERFEIPRSAALAVAQSASGNLRRALLALEALHTQDPTFQSASVAGKAT 277
Query: 176 QQIVE-PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
+IV PDW+ Y I++ Q+P++LL VR LYELLVH I ++ + L+
Sbjct: 278 SKIVPMPDWEEYCGKVTSTILTSQTPQQLLAVRQMLYELLVHCITPQLILSTITRNLVER 337
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
D LK + + AA ++HR+ G+KPIFH+EA+VA M+++
Sbjct: 338 ADEALKPEIVHWAAFYDHRLKLGTKPIFHLEAFVAKVMSLW 378
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSL+VDKYRP L L +H + ++ L + G DFPHLLFYGPSGAGKKTRIM L+EL
Sbjct: 27 MSLFVDKYRPKQLNDLHYHHDLSRRIQALAESGQDFPHLLFYGPSGAGKKTRIMCTLREL 86
Query: 60 YG 61
YG
Sbjct: 87 YG 88
>gi|341881278|gb|EGT37213.1| CBN-RFC-3 protein [Caenorhabditis brenneri]
Length = 354
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 146/215 (67%), Gaps = 1/215 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ LRRTMEKY C++ILC S+S++I ++SRC+ I +PAP+ +
Sbjct: 133 VVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPLQSRCIIINVPAPSDD 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIVEP 181
++ +V+ I + E + IP ++ ++S+ NLRRAIL EA K++ + + QI
Sbjct: 193 KMRAVINKIIEAEKIQIPSNILQKIIEKSEGNLRRAILTIEALKMENESGISANAQIPTA 252
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
+W+IYI++TA++I+ +Q+P +L+VR RLYE++ IP V+FK LLE LL +C +
Sbjct: 253 EWEIYIQETARMILMKQTPDMILKVRERLYEVISRLIPTTVIFKKLLEFLLPSCPPAIVR 312
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276
+ + AA FEHR+ G KPIFH E +++SFM +YL
Sbjct: 313 EVVSEAAKFEHRLILGQKPIFHFEGFISSFMDIYL 347
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLK 57
M+LWVDKYRP L +D+H +QA+HL+ L PHLLF GPSGAGKKTRI LL+
Sbjct: 1 MALWVDKYRPKELLGKDGVDYHLEQASHLK-FLAADCMPHLLFCGPSGAGKKTRIKCLLR 59
Query: 58 ELYG 61
ELYG
Sbjct: 60 ELYG 63
>gi|341892055|gb|EGT47990.1| hypothetical protein CAEBREN_22178 [Caenorhabditis brenneri]
Length = 354
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 145/215 (67%), Gaps = 1/215 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ LRRTMEKY C++ILC S+S++I ++SRC+ I +PAP+ +
Sbjct: 133 VVVLCEADSLTRDAQHGLRRTMEKYANNCKIILCCESLSRIIEPLQSRCIIINVPAPSDD 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIVEP 181
++ +V+ I + E + IP ++ +S+ NLRRAIL EA K++ + QI
Sbjct: 193 KMRAVINKIIEAEKIQIPSNILQKIIDKSEGNLRRAILTIEALKMENESGISASAQIPTA 252
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
+W+IYI++TA++I+ +Q+P +L+VR RLYE++ IP V+FK +LE LL +C S +
Sbjct: 253 EWEIYIQETARMILMKQTPDMILKVRERLYEVISRLIPTTVIFKKILEFLLPSCPSAIVR 312
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276
+ + AA FEHR+ G KPIFH E +++SFM +YL
Sbjct: 313 EVVSEAAKFEHRLILGQKPIFHFEGFISSFMDIYL 347
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLK 57
M+LWVDKYRP L +D+H +QA+HL+ L + PHLLF GPSGAGKKTRI LL+
Sbjct: 1 MALWVDKYRPKELLGKDGVDYHLEQASHLKFLAADC-MPHLLFCGPSGAGKKTRIKCLLR 59
Query: 58 ELYG 61
ELYG
Sbjct: 60 ELYG 63
>gi|407404710|gb|EKF30062.1| replication factor C, subunit 5, putative [Trypanosoma cruzi
marinkellei]
Length = 349
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 178/347 (51%), Gaps = 72/347 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDKYRP +L +++ + + L+ L + D PHLL YGP
Sbjct: 2 LWVDKYRPKSLDEVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMSVLRHVYGP 61
Query: 44 S-----------------------------------GAGKKTRI--MALLKELYGPV--- 63
S AG R+ M +++E+ V
Sbjct: 62 SVYSLRLEHRSVQVTDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVSLQ 121
Query: 64 -----------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
++LNE D + R AQ ALRRTMEKY++TCRL+L NS S++I +RSRCL
Sbjct: 122 SSTSNGVKYKVVLLNEVDKMGRAAQHALRRTMEKYMSTCRLVLICNSTSRLIAPLRSRCL 181
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQYP 171
+R+P+ + E + V+ +C+ E +P P F + Q+S+ NLRRA+LM EA+ + +
Sbjct: 182 AVRVPSHSKENLTKVIRRVCELENRPLPSPAFMATVTQRSEGNLRRALLMVEAAAMTKVD 241
Query: 172 FQID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
F + I +PDW++++ + A I+SEQ+PKKL E+R + Y LL + ++ + +LE
Sbjct: 242 FSGNGADIPQPDWRVFLDEIANDILSEQTPKKLHEIRGKFYNLLGQCVSGELILRLVLEK 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
L++ D L+ + +AA ++H + G+K I H+EA+ A M + Q
Sbjct: 302 LMSAVDPALRRPVVALAAQYDHNMKLGTKTIVHLEAFAAGVMQLLKQ 348
>gi|336371191|gb|EGN99530.1| hypothetical protein SERLA73DRAFT_179588 [Serpula lacrymans var.
lacrymans S7.3]
Length = 368
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 152/247 (61%), Gaps = 14/247 (5%)
Query: 43 PSGAGKKTRIM--ALLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS AG R++ LLKE+ V+++NE D L+R+AQ ALRRTMEKY+
Sbjct: 97 PSEAGNYDRVVIQELLKEIAQTQQVDLNAKQRFKVVVINEADSLSRDAQAALRRTMEKYM 156
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
+ R+ILCANS S++I I+SRCL +R+ APT EE+ +VL ++ KK +P + + ++
Sbjct: 157 SNMRIILCANSTSRLIAPIKSRCLLMRVAAPTPEEMQTVLHHVAKKLKFDLPDDASKQIV 216
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
S NLR+A+L+ EA K+Q I +PDW+ Y A LI+ EQSP +++EVR
Sbjct: 217 DDSGGNLRKALLVFEALKMQSPDLSGSLAIAKPDWETYCHKVADLIVQEQSPARVMEVRA 276
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+ YELL H IP ++ K + E ++ D LK+ + AA +E R+ G+K I+H+EA+V
Sbjct: 277 KFYELLSHCIPPTIVLKTVAERVVERVDESLKADIMHWAAFYEGRMRIGNKKIYHLEAWV 336
Query: 269 ASFMAMY 275
M++Y
Sbjct: 337 VKVMSLY 343
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDK+RP L L +H + L++L GDFPH+LFYGPSGAGKKTRI L++L+
Sbjct: 1 MSLWVDKFRPKTLDDLHYHEGLSARLKSLAASGDFPHMLFYGPSGAGKKTRISCTLRQLF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|302509034|ref|XP_003016477.1| hypothetical protein ARB_04766 [Arthroderma benhamiae CBS 112371]
gi|291180047|gb|EFE35832.1| hypothetical protein ARB_04766 [Arthroderma benhamiae CBS 112371]
Length = 356
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 168/346 (48%), Gaps = 68/346 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + LR L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPKTLDALTYHQDLSARLRALAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGTYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL AN+ + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ ++I VL KKEG P RLA++S RNLRRA+LM EA Q
Sbjct: 181 LVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 SDNTPIPPPDWEALISVVADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D LK + I+ +A +EHRI GS + + ++ S + L F
Sbjct: 301 PKIDDALKPEVIKWSAFYEHRIKMGSVRLCYANSFEISADKILLLF 346
>gi|146412432|ref|XP_001482187.1| hypothetical protein PGUG_05207 [Meyerozyma guilliermondii ATCC
6260]
Length = 362
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 175/356 (49%), Gaps = 84/356 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +L FH N+LR L GDFPHLL Y
Sbjct: 1 MSLWVDKYRPRSLDQLSFHDSITNNLRALASTGDFPHLLVYGPSGSGKKTRIYSTLHELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLK++
Sbjct: 61 GPLVEKLKIDVKKFTTTSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 63 ---------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI 107
V+++NE D L+R+AQ ALRRTMEKY + RLI+ N+ S +I I
Sbjct: 121 VDFTAKASSPRHKFKVVVINEADSLSRDAQAALRRTMEKYSSNIRLIMVCNTTSSIISPI 180
Query: 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAIL 160
+SR L +RIPAPT EI VLT I KE + P +F +LA +RN+RRA+L
Sbjct: 181 KSRTLLVRIPAPTTAEIALVLTTIADKETVKFNPGDEETRQKFFEQLATNCNRNMRRALL 240
Query: 161 MCEASKVQQYPFQID---QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHS 217
E +Q I+ Q IV+ DW++ I + A+ I ++++ L +VR LYELL H
Sbjct: 241 CFETILMQTETININNPKQAIVDLDWEVIILNLAQSIYTQRTVANLAKVRVVLYELLSHC 300
Query: 218 IPVNVLFKYLLEGLLANCDSDLKSKS-IEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
IP V+ K LL L+ + DL ++ + +AA+F+ R+ G K IFH+E +VA M
Sbjct: 301 IPPAVILKTLLFDLIKLANKDLLTRDLVGVAAVFDERLSLGQKSIFHLEGFVAKAM 356
>gi|428183987|gb|EKX52843.1| replication factor C subunit 3 [Guillardia theta CCMP2712]
Length = 362
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 148/226 (65%), Gaps = 11/226 (4%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+++LNE D ++R+ Q ALRRTMEKY + CR +L N+ S+VI +RSRC+C+R+PAP +
Sbjct: 133 IVLLNEVDKMSRDGQAALRRTMEKYTSACRFVLVCNNASKVIEPLRSRCICLRVPAPRDK 192
Query: 123 EIVSVLTNICKKE-GLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
E+ +L N+ +KE +P E A +++ S+RNLR+A+LM E++ V+ F + + +P
Sbjct: 193 EVEEILCNVYRKEVKKELPVEAATKISNMSNRNLRKALLMLESTYVK---FGVVDESSQP 249
Query: 182 ---DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD 238
DW++Y+ A I+ +QSPKKLLE+R + YELL IP ++ + L LL D
Sbjct: 250 QLADWEVYVGMIAHNILEDQSPKKLLEIRGQFYELLASCIPPELILQKLALELLRKLDDS 309
Query: 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY----LQFME 280
+K ++ AA FEHR+ GSKPIFH+EA+ A M +Y ++FME
Sbjct: 310 VKVDILQNAAFFEHRLQLGSKPIFHLEAFAAKAMVIYKKWSIEFME 355
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNL-LKEG--DFPHLLFYGPSGAGKKTRIMALLKEL 59
LWVDKYRP L KL ++ L+ + KE + HLLFYGP GAGKKTRIMALL+E+
Sbjct: 2 LWVDKYRPVQLDKLTYNDGLTQQLKRISAKENVQNMCHLLFYGPPGAGKKTRIMALLREI 61
Query: 60 YGPVI 64
YGP +
Sbjct: 62 YGPGV 66
>gi|403356875|gb|EJY78044.1| Replication factor C subunit 3 [Oxytricha trifallax]
gi|403375729|gb|EJY87839.1| Replication factor C subunit 3 [Oxytricha trifallax]
Length = 371
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 154/257 (59%), Gaps = 24/257 (9%)
Query: 43 PSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS A + R++ L+KE+ G V++++E D+LTREAQ ALRRTME Y+
Sbjct: 105 PSDADNQDRVIVQKLIKEVAGSQQLDTKAQKSFKVVVIHELDNLTREAQAALRRTMETYM 164
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
CR+I S+S+VI +RSRCL +R+PAP +EIV VL I + E +P + A +
Sbjct: 165 PYCRIIANCESLSKVIQPLRSRCLQVRVPAPNAQEIVGVLDQIARNENFDLPKQLAFSIC 224
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
S RNLRRAI+M + +K++ + P+++ Y RD AK+++ EQSPK+L +R+
Sbjct: 225 NYSRRNLRRAIMMLQTAKLKNEKLSDKTYVPGPEYETYTRDIAKMVVMEQSPKQLRAIRS 284
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSD----------LKSKSIEMAAMFEHRIHKGS 258
+LYELL I +++F+ L L +S +K + ++ A MFEHR +G+
Sbjct: 285 KLYELLTKGITSDMIFQVLAREFLKKMNSGDKNSAALPEVIKPEVLKFAVMFEHRCKEGT 344
Query: 259 KPIFHIEAYVASFMAMY 275
K IFH+EA++A MA++
Sbjct: 345 KAIFHLEAFLARVMAIF 361
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 3 LWVDKYRPNNLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWV+KYRP + H L L + DFPH+LFYGPSGAGK+T LL+ELY
Sbjct: 7 LWVEKYRPLCIDDAKAIHSDTYKMLSQLAQSDDFPHILFYGPSGAGKRTLTKCLLQELYK 66
Query: 62 PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
N + H + + + + ++ +N +V P+
Sbjct: 67 -----NNSVHKIKSEHKEFKASATSSTVVECVVFSSNYHIEVTPS 106
>gi|342184431|emb|CCC93913.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 395
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 173/344 (50%), Gaps = 72/344 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDKYRP L ++ + + L+ L + D PHLL YGP
Sbjct: 48 LWVDKYRPKTLDDVELYPELTEVLKRLAESQDLPHLLLYGPSGTGKKTRAMAVLEKVYGP 107
Query: 44 -----------------------------------SGAGKKTRI--MALLKEL------- 59
S AG R+ M +++E+
Sbjct: 108 TVYSLRLEHKSVQVTDSKVVDIATLSSPHHIDINPSDAGNHDRVVVMQMIREIAQTVPLQ 167
Query: 60 -YGP------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
P V++LNE D + R AQ ALRRTMEKY++TCRLIL +S S++I +RSRCL
Sbjct: 168 PVAPKGAKYKVVVLNEVDKMGRAAQHALRRTMEKYMSTCRLILICSSTSRLIAPLRSRCL 227
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRRAILMCEASKVQQYP 171
IR+P+ + E + V+ +C++EG P + F L +QS+ NLRRA LM EA+ + +
Sbjct: 228 AIRVPSHSRENLEKVVKAVCEREGRAPPSQAFLASLTRQSEGNLRRAQLMLEAAAMNKAD 287
Query: 172 FQ-IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
F I + DW++++ A IISEQ+P+KL E+R + Y++L I V+ + +LE
Sbjct: 288 FAGSGSDIPQADWQVFLEQIASDIISEQTPRKLYEIRGKFYDMLGQCISGEVILRGILEV 347
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
LL L+ I +AA ++H + G+KPI H+EA+ + M +
Sbjct: 348 LLTTVSPSLRPAVISLAAKYDHNMKLGTKPILHLEAFASGVMQL 391
>gi|452821368|gb|EME28399.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 401
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 176/357 (49%), Gaps = 84/357 (23%)
Query: 3 LWVDKYRPNNLQKLDFH----------CKQAN--HL------------------------ 26
LWVDKYRP L+ LD H C+Q HL
Sbjct: 30 LWVDKYRPKTLETLDIHPEWTEKLASLCEQGTLPHLLFYGPSGVGKRTRIYALLRQVFGI 89
Query: 27 --------RNLLKEGDFP-----------HLLFYGPSGAGKKTR--IMALLKELYGP--- 62
LK G+ P H + P+ G R I ++KE+
Sbjct: 90 AIEKRQVEHRFLKVGEPPKEVELTTITSAHHIELCPADVGYNDRLVIQEIVKEIASSKPI 149
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L++ D ++++AQQALRRTMEKY + CR+I+ A S+++V+ IRSRCL
Sbjct: 150 ELGNVHRGYKVVVLHDIDEVSKQAQQALRRTMEKYTSCCRIIMSAESVTRVMEPIRSRCL 209
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
IRIP P EEI VL I KKEGL +P +A +L QS NLR+AIL+ + + YPF
Sbjct: 210 GIRIPCPKKEEIEQVLQKIAKKEGLVLPDCYANQLVTQSKGNLRKAILLLQVGRAIAYPF 269
Query: 173 Q--------------IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSI 218
I Q DW+ D A ++I EQ+PK+L +R +LYEL H+I
Sbjct: 270 SQQQQKKNEEEEESWISSQETGWDWERLCYDIANIVIREQNPKQLCNIRNKLYELFCHAI 329
Query: 219 PVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
P +++F+ + LL D ++ + AA +E+ + +GSK IFH+EA++A M +Y
Sbjct: 330 PGDMIFRKITLHLLRMMDEEVAPQVCHWAAHYEYGMKRGSKEIFHLEAFLAKVMYIY 386
>gi|157877944|ref|XP_001687264.1| putative replication factor C, subunit 5 [Leishmania major strain
Friedlin]
gi|68130339|emb|CAJ09651.1| putative replication factor C, subunit 5 [Leishmania major strain
Friedlin]
Length = 351
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 176/349 (50%), Gaps = 74/349 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVD+YRP L+ ++ + + L L K D PHLLF YGP
Sbjct: 2 LWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 44 S-----------------------------------GAGKKTR--IMALLKELYGPV--- 63
S AG R +M +++E+ V
Sbjct: 62 SVFSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121
Query: 64 -------------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSR 110
++LNE D ++R AQ ALRRTMEKY+ TCRL L NS S++IP +RSR
Sbjct: 122 STSGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 111 CLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRRAILMCEASKVQQ 169
CL IR+ + + + + + +C+ EG +P F LA +SD NLRR +LM EAS + +
Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEASALAK 241
Query: 170 YPFQID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
+ + I + DWK+++ + + I++EQ+PK+L EVR + Y+LL I + K L+
Sbjct: 242 VDWSGNGAAIPQADWKLFLDEISHDIVAEQTPKRLHEVRLKFYDLLAQCISGETILKTLV 301
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
+ LLA L+ IE+AA ++H + G+KPI H+EA+VA+ M + Q
Sbjct: 302 DSLLAAVAPALQRPLIELAAKYDHNMKLGTKPILHLEAFVAAVMKLIKQ 350
>gi|340382408|ref|XP_003389711.1| PREDICTED: replication factor C subunit 3-like, partial [Amphimedon
queenslandica]
Length = 165
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 123/163 (75%)
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
I SVL +C KE LTIP A R+A++S+RNLR+AIL+CEA +VQQYPF DQ + + +W
Sbjct: 1 ICSVLQYVCHKESLTIPDTLAKRIAEKSERNLRKAILLCEACRVQQYPFNDDQVVPDCEW 60
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS 243
++++R+TA +II+EQSPK+LLEVR R YELL H IP +++FK +L L+ANCD LK++
Sbjct: 61 EVFLRETAAMIITEQSPKRLLEVRGRYYELLTHCIPPDIIFKRILTELVANCDGTLKAEV 120
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
++AA ++ + GSK IFH+EA+ A FM +Y QF+E+ L ++
Sbjct: 121 TQLAAQYQAQSQLGSKAIFHLEAFTAKFMRIYKQFLEEGLESM 163
>gi|401421084|ref|XP_003875031.1| putative replication factor C, subunit 5 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491267|emb|CBZ26533.1| putative replication factor C, subunit 5 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 351
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 174/349 (49%), Gaps = 74/349 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVD+YRP L+ ++ + + L L K D PHLLF YGP
Sbjct: 2 LWVDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 44 S-----------------------------------GAGKKTRI--MALLKELYGPV--- 63
S AG R+ M +++E+ V
Sbjct: 62 SVYSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRVIVMQMIREIAQTVPLH 121
Query: 64 -------------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSR 110
++LNE D ++R AQ ALRRTMEKY+ TCRL L NS S++IP +RSR
Sbjct: 122 TTANNRKNVPYKVVVLNEVDKMSRSAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 111 CLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQ 169
CL IR+ + + + + + +C+ EG +P F LA +SD NLRR +LM EAS + +
Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSAAFLNSLALRSDGNLRRGLLMLEASAMAK 241
Query: 170 YPFQID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
+ + I + DWK+++ + + I++EQ+PK+L EVR + Y+LL I + K L+
Sbjct: 242 VDWSSNGAAIPQADWKLFLDEISHDIVAEQTPKRLHEVRLKFYDLLSQCISGETILKTLV 301
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
+ LL L+ IE+AA ++H + G+KPI H+EA+VA M + Q
Sbjct: 302 DSLLTAVAPALQHSLIELAAKYDHNMKLGTKPILHLEAFVAGVMKIIKQ 350
>gi|154346764|ref|XP_001569319.1| putative replication factor C, subunit 5 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066661|emb|CAM44460.1| putative replication factor C, subunit 5 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 351
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 174/349 (49%), Gaps = 74/349 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVD+YRP L+ ++ + + L L K D PHLLF YGP
Sbjct: 2 LWVDRYRPKTLKDVELYPELREVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 44 S-------------------------------------GAGKKTRIMALLKELYGPV--- 63
S G ++ +M +++E+ V
Sbjct: 62 SVYSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGYYDRSIVMQMIREIAQTVPLH 121
Query: 64 -------------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSR 110
++LNE D ++R AQ ALRRTMEKY++TCRL L NS S++I +RSR
Sbjct: 122 TTVNSGKSVPYKVVVLNEVDKMSRSAQHALRRTMEKYMSTCRLFLLCNSTSRLISPLRSR 181
Query: 111 CLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRRAILMCEASKVQQ 169
CL IR+ + E + + +C+ EG +P E F LA +SD NLRR +LM EAS + +
Sbjct: 182 CLGIRVALHSKENLKLAVQRVCEGEGRPLPSEAFLHALALRSDGNLRRGLLMLEASAMTR 241
Query: 170 YPFQIDQQIV-EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
+ + + + DWK+++ + + I++EQ+PK+L EVR + Y+LL I + K L+
Sbjct: 242 VDWSGNGATIPQADWKLFLDEISHDIVAEQTPKRLHEVRLKFYDLLAQCISGETILKTLV 301
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
+ LL L+ IE+AA ++H + G+KPI H+EA+VA M + Q
Sbjct: 302 DSLLTAVPPTLQRPLIELAAKYDHNMKLGTKPILHLEAFVAGVMKLIKQ 350
>gi|339899439|ref|XP_003392854.1| putative replication factor C, subunit 5 [Leishmania infantum
JPCM5]
gi|398025304|ref|XP_003865813.1| replication factor C, subunit 5, putative [Leishmania donovani]
gi|321398829|emb|CBZ09063.1| putative replication factor C, subunit 5 [Leishmania infantum
JPCM5]
gi|322504050|emb|CBZ39137.1| replication factor C, subunit 5, putative [Leishmania donovani]
Length = 351
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 173/349 (49%), Gaps = 74/349 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVD+YRP L+ ++ + + L L K D PHLLF YGP
Sbjct: 2 LWVDRYRPKTLKDVELYPELKGVLTRLSKAQDVPHLLFYGPSGSGKKTRAMAMLHEIYGP 61
Query: 44 S-----------------------------------GAGKKTR--IMALLKELYGPV--- 63
S AG R +M +++E+ V
Sbjct: 62 SVYSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLH 121
Query: 64 -------------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSR 110
++LNE D ++R AQ ALRRTMEKY+ TCRL L NS S++IP +RSR
Sbjct: 122 TTASNRKNVPYKVVVLNEVDKMSRSAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSR 181
Query: 111 CLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQ 169
CL IR+ + + + + + +C+ EG +P F LA +S NLRR +LM EAS + +
Sbjct: 182 CLGIRVASHSKDNLKLAVQRVCEGEGRPLPSAAFLNSLALRSGGNLRRGLLMLEASAMAK 241
Query: 170 YPFQID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL 228
+ + I + DWK+++ + + I++EQ+PKKL EVR + Y+LL I + K L+
Sbjct: 242 VDWSGNGAAIPQADWKLFLDEISHDIVAEQTPKKLHEVRLKFYDLLAQCISGETILKTLV 301
Query: 229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
+ LL L+ IE+AA ++H + G+KPI H+EA+VA M + Q
Sbjct: 302 DSLLTAVAPALQHPLIELAAKYDHNMKLGTKPILHLEAFVAGVMKLIKQ 350
>gi|50549265|ref|XP_502103.1| YALI0C21692p [Yarrowia lipolytica]
gi|49647970|emb|CAG82423.1| YALI0C21692p [Yarrowia lipolytica CLIB122]
Length = 348
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 166/349 (47%), Gaps = 79/349 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDK+RP +L +D+H + L GD PHLL Y
Sbjct: 1 MSLWVDKHRPKSLDHVDYHQDISERFSALAATGDLPHLLVYGPSGAGKKTRVMGLLKKLY 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GPS G + I LLKE
Sbjct: 61 GPSVEKISTKSHKFVTPSKRELELGVICSAYHLEVTPSDMGNNDRLVIQQLLKETAETQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D L+R+AQ ALRRTMEKY RLIL NS S +I IRSR L
Sbjct: 121 VDLNAKQRFKVVIINEADSLSRDAQAALRRTMEKYTKNIRLILLTNSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKVQQYP 171
+R+ APT ++IV+VL + KE + + L ++A SDRNLR+A+L E Y
Sbjct: 181 LVRVAAPTEQDIVNVLEKVAAKEHVDLENTKTLEKIASHSDRNLRKALLTLET----LYT 236
Query: 172 FQIDQQIVE------PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK 225
F + + E PDW++ I A+ ++S ++P LL +R+ YELL H IP + + K
Sbjct: 237 FAGSKTVSENTPIPTPDWEMVIGRIARELVSSRTPATLLAIRSLFYELLSHCIPPSTILK 296
Query: 226 YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L L+ ++L+ I AA +EHR+ G+K IFH+EA+ A M +
Sbjct: 297 ELTYRLIPVVPANLRVPLISAAATYEHRLKLGAKYIFHLEAFCAKVMVL 345
>gi|296812353|ref|XP_002846514.1| activator 1 38 kDa subunit [Arthroderma otae CBS 113480]
gi|238841770|gb|EEQ31432.1| activator 1 38 kDa subunit [Arthroderma otae CBS 113480]
Length = 336
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 162/347 (46%), Gaps = 84/347 (24%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP L L +H + L+ L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPKTLDALTYHHDLSARLKALAQSGDFPHLLVYGPSGAGKKTRIIATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLELTPSDVGNYDRVVVQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL AN+ + +I IRSR L
Sbjct: 121 VDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANTTANIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ AP+ ++I L KKEG P RLA++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPSEDDICQALKLAGKKEGWNDCPGLNKRLAKESGRNLRRALLMFEAVHAQNDKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ I PDW+ I A I++E+SP ++L+VR RLY+LL H IP + K L L+
Sbjct: 241 SDNTPIPPPDWEALIALIADEIMAERSPARILQVRARLYDLLTHCIPPTTILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
D LK + + IFH+EA+VA FM + +M
Sbjct: 301 PKIDDALKPEKV----------------IFHLEAFVAKFMRILESYM 331
>gi|68472569|ref|XP_719603.1| hypothetical protein CaO19.9577 [Candida albicans SC5314]
gi|46441427|gb|EAL00724.1| hypothetical protein CaO19.9577 [Candida albicans SC5314]
gi|238881908|gb|EEQ45546.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 362
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 169/355 (47%), Gaps = 83/355 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L +L +H N LR L K GDFPHLL +
Sbjct: 1 MSLWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIF 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLK++
Sbjct: 61 GPQVEKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108
++I+NE D L+R+AQ ALRRTMEKY + RLIL NS+S +I I+
Sbjct: 121 VDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIK 180
Query: 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAILM 161
SR L +RIP+P+ ++I +L ++ +KE L F ++A+ S+RNLRR +L
Sbjct: 181 SRTLLVRIPSPSVDDINHILGHVAEKESLKFSTHNDSEINHFYSKVAETSNRNLRRCLLS 240
Query: 162 CEASKVQQYPFQIDQQI--VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIP 219
E +Q + + + DW+ IR+ A I Q+ L + R LYELL H IP
Sbjct: 241 FETISMQNETINVRSDVAKIALDWEAIIRNMAISIQKNQNVATLAKTRVVLYELLSHCIP 300
Query: 220 VNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
++ K LL L+ + +++L S+ I A++F+ R+ GSK IFH+E +VA M
Sbjct: 301 ARIILKTLLFDLIDIFSNNNELVSELINQASIFDERLSLGSKSIFHLEGFVAKSM 355
>gi|68472826|ref|XP_719478.1| hypothetical protein CaO19.2029 [Candida albicans SC5314]
gi|46441297|gb|EAL00595.1| hypothetical protein CaO19.2029 [Candida albicans SC5314]
Length = 362
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 168/355 (47%), Gaps = 83/355 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L +L +H N LR L K GDFPHLL +
Sbjct: 1 MSLWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIF 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLK++
Sbjct: 61 GPQVEKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108
++I+NE D L+R+AQ ALRRTMEKY + RLIL NS+S +I I+
Sbjct: 121 VDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIK 180
Query: 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAILM 161
SR L +RIP+P+ + I +L ++ +KE L F ++A+ S+RNLRR +L
Sbjct: 181 SRTLLVRIPSPSVDNINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCLLS 240
Query: 162 CEASKVQQYPFQIDQQI--VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIP 219
E +Q + + + DW+ IR+ A I Q+ L + R LYELL H IP
Sbjct: 241 FETISMQNETINVRSDVAKIALDWEAIIRNMAISIQKNQNVATLAKTRVVLYELLSHCIP 300
Query: 220 VNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
++ K LL L+ + +++L S+ I A++F+ R+ GSK IFH+E +VA M
Sbjct: 301 ARIILKTLLFDLIDIFSNNNELVSELINQASIFDERLSLGSKSIFHLEGFVAKSM 355
>gi|209882811|ref|XP_002142841.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209558447|gb|EEA08492.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 350
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 169/340 (49%), Gaps = 73/340 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGD---FPHLLFYGPSGA------------- 46
LWVDKY+P+ L +L H KQ N L + G PHL+FYGPSG+
Sbjct: 2 LWVDKYQPHRLNELLCH-KQLNCLLEKIANGSNKTIPHLIFYGPSGSGKKARISAMLHEV 60
Query: 47 --------------------------------------GKKTRIMA--LLKELY------ 60
G K R++ L+K+L
Sbjct: 61 FGDSVDKVKADIIKPEGINSDFVVCQSSHHMQISAPDLGTKDRVVTQYLIKQLSSQVGAN 120
Query: 61 -----GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
GP V ++ E+D L+ EAQ LRRTMEKY R+IL +S +I +RSRCL
Sbjct: 121 TFFKKGPNYRVFVILESDVLSMEAQAGLRRTMEKYAANSRVILHCEQLSSIISPLRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
CIR+P P+H EIV VL++I K EGL + E+ + + S+ NLRRAIL+ E + VQ F
Sbjct: 181 CIRVPLPSHNEIVHVLSHIAKSEGLNVSNEYLIDITTASEGNLRRAILLLETAAVQN--F 238
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ ++ W+ D A +I PK LL++R +Y+LL IP +++ L + +L
Sbjct: 239 SLSPSNMKLPWQRVCNDIAANVIKNPHPKTLLDIREPMYDLLSSCIPADIVLVTLTKQIL 298
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
++KS+ I AA + H + GSK I+H+EA++A M
Sbjct: 299 NLAPHNIKSRIIAAAAHYSHTLKLGSKDIWHLEAFLAQVM 338
>gi|281204078|gb|EFA78274.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 346
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 141/227 (62%), Gaps = 11/227 (4%)
Query: 36 PHLLFYGPSGAGKKTR--IMALLKELYGP--------VIILNETDHLTREAQQALRRTME 85
P+ + P AG R I +++K++ V+ILNE D L+++AQ ALRRTME
Sbjct: 90 PYHIEINPGEAGSYDRLVIQSIIKDIAQSPPIDSQSFVVILNEVDKLSKDAQHALRRTME 149
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
KY CRLILC +S S+VI IRSRC+ IR+PAPT EEIV VL N+ KKE + E A
Sbjct: 150 KYANFCRLILCCDSTSKVIDPIRSRCMGIRVPAPTKEEIVKVLQNVAKKERFDLSAEVAG 209
Query: 146 RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLE 205
A++S+ NLR A+L+ E+ K ++YPFQ + ++ DW+ I + A +I+EQSP +L
Sbjct: 210 HFAERSNGNLRYALLLLESKKTKEYPFQTN-ELPLLDWESAIFNVANDMITEQSPARLQV 268
Query: 206 VRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEH 252
+R +LYEL+ H IP +++ K L LL D+ +K I AA +E
Sbjct: 269 IRGKLYELIGHCIPPDIIMKNLTFALLERIDTTIKYDIIHWAAFYEQ 315
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LW+DKY+P +L ++D+H + +L+N++ GDFPHLL YGPSGAGKKTR+MA LKE+YG
Sbjct: 2 LWIDKYKPTSLDQMDYHKDISENLKNMILGGDFPHLLVYGPSGAGKKTRVMATLKEIYG 60
>gi|71001752|ref|XP_755557.1| DNA replication factor C subunit Rfc5 [Aspergillus fumigatus Af293]
gi|66853195|gb|EAL93519.1| DNA replication factor C subunit Rfc5, putative [Aspergillus
fumigatus Af293]
Length = 294
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 147/293 (50%), Gaps = 68/293 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VD+ RP +L L +H + + L++L + GDFPHLL Y
Sbjct: 1 MALLVDRLRPRSLDSLSYHHELSARLKSLAQSGDFPHLLMYGPSGAGKKTRVIATLKELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GSGVEKIKIDARVFQTTSNRKLEFNIVSSVYHLEITPSDVGNYDRVVIQELLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTSNIIAPIRSRTL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APT E+I SVL N K+EG P R+A++SDRNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTEEQICSVLQNAGKREGWPEAPGLNKRIAKESDRNLRRALLMFEAIYAQTEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK 225
+ I PDW+ I A I++E+SP +LL+VR RLY+LL H IP + K
Sbjct: 241 TDNTPIPPPDWEALISLIADEILAERSPARLLQVRARLYDLLTHCIPPTTIIK 293
>gi|164656026|ref|XP_001729141.1| hypothetical protein MGL_3608 [Malassezia globosa CBS 7966]
gi|159103031|gb|EDP41927.1| hypothetical protein MGL_3608 [Malassezia globosa CBS 7966]
Length = 247
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 143/244 (58%), Gaps = 29/244 (11%)
Query: 43 PSGAGKKTR--IMALLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS AG R I +LKE+ ++++NE D L+R+AQ ALRRTMEKY+
Sbjct: 5 PSDAGSYDRLVIQDILKEIAQTQQVDQNAARRFKMVVINEADSLSRDAQAALRRTMEKYM 64
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
R+ILCANS S++I IRSRCL +R+ AP+ E++ VL ++ K+E +P
Sbjct: 65 RNMRMILCANSTSRIIAPIRSRCLLLRVGAPSDEDMSRVLRHVAKREKFQLP-------- 116
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
DR + I C + F I +PDW++Y TA +I+SEQ+P +LL VR
Sbjct: 117 ---DR-ISSEINSCHRIRPD---FSGPVSIAQPDWQMYCERTADMIVSEQTPARLLAVRG 169
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
RLYELLVH+IP ++FK L L+ D L++ +E AA +E R G+KPIFH+EA+V
Sbjct: 170 RLYELLVHAIPAALIFKTLTHYLVKRVDETLRASLVEKAAFYELRSATGNKPIFHLEAFV 229
Query: 269 ASFM 272
A M
Sbjct: 230 AQVM 233
>gi|241950693|ref|XP_002418069.1| activator 1 40 kda subunit, putative; replication factor c subunit
5, putative; replication factor c5, putative [Candida
dubliniensis CD36]
gi|223641408|emb|CAX43368.1| activator 1 40 kda subunit, putative [Candida dubliniensis CD36]
Length = 362
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 167/360 (46%), Gaps = 93/360 (25%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L +L +H LR L K GDFPHLL +
Sbjct: 1 MSLWVDKYRPRTLDQLTYHDSITKSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIF 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLK++
Sbjct: 61 GPQVEKLKIDVKNFVTSSNRKLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108
++I+NE D L+R+AQ ALRRTMEKY + RLIL NS+S +I I+
Sbjct: 121 VDFANQSRAKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIK 180
Query: 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-------FALRLAQQSDRNLRRAILM 161
SR L +RIP+P+ ++I +L+++ +KE L F ++A+ S+RNLRR +L
Sbjct: 181 SRTLLVRIPSPSVDDINHILSHVAEKESLKFNTNNDSEIDHFYSKVAEASNRNLRRCLLS 240
Query: 162 CEASKVQQYPFQIDQQI--VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIP 219
E +Q + + V DW+ +R+ A I Q+ L + R LYELL H IP
Sbjct: 241 FETISMQAETINVRSDVAKVALDWETIVRNMAINIQKNQNVATLAKTRVVLYELLSHCIP 300
Query: 220 VNVLFKYLLEGLLANCDSDLKSKS-------IEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
++ K LL L+ DL SK+ I A++F+ R+ GSK IFH+E +VA M
Sbjct: 301 ARIILKTLLFDLI-----DLSSKNNQLVLELINQASIFDERLSLGSKSIFHLEGFVAKSM 355
>gi|123480785|ref|XP_001323411.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121906275|gb|EAY11188.1| hypothetical protein TVAG_498820 [Trichomonas vaginalis G3]
Length = 346
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 67/343 (19%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYG------------------- 42
+LW+D++RP+NL L L+++ DFPHLLF G
Sbjct: 3 ALWIDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKLFN 62
Query: 43 ----------------------------------PSGAGKKTR--IMALLKELYGP---- 62
P+ AG R I LK++
Sbjct: 63 AELTHLASGFRTIEEGDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAASQVVG 122
Query: 63 -----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
V+++NE L++ AQQALRRTMEKY +CR+IL A+S+SQ+I +RSRCL IR P
Sbjct: 123 GFSIKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTP 182
Query: 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
+I + + + KE I E L +S NLRRAI + E +Q+ + Q
Sbjct: 183 RIPSADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLEMLSMQKKGGSV--Q 240
Query: 178 IVEPDWKIYIRDTAKLIISEQ-SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+ P+W+ Y + +++I + + + E+R LYELLVH +P + + ++ G+L D
Sbjct: 241 SILPEWERYTDELVQILIEGKLQTETIKEIRVHLYELLVHCVPPTEILRRIVHGILHQID 300
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
S+L K AA +E R+ +GSKPIFH+EA+ A F+ +Y ++
Sbjct: 301 SNLVEKVASTAAFYEARMQQGSKPIFHLEAFCARFICIYREYF 343
>gi|255723854|ref|XP_002546856.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
gi|240134747|gb|EER34301.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
Length = 362
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 174/362 (48%), Gaps = 83/362 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP L +L +H LR L K GDFPHLL +
Sbjct: 1 MSLWVDKYRPKTLDQLSYHDSITQSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIF 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLK++
Sbjct: 61 GSQVEKLKIDVKNFVTSSNRKLEFNVLSSANHLEITPSDMGNNDRVVIQDLLKDVASTEQ 120
Query: 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108
++I+NE D L+R+AQ ALRRTMEKY + RLIL NS+S +I I+
Sbjct: 121 VDFANQSRTKHRFKIVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIK 180
Query: 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP--EFALR-----LAQQSDRNLRRAILM 161
SR L +RIP+P+ ++I ++L N+ + E + E A++ +A S+RNLRR +L
Sbjct: 181 SRTLLVRIPSPSVDDISNILNNVAESEAIKFKATNELAMKKFYNDIATTSNRNLRRCLLS 240
Query: 162 CEASKVQQYPFQIDQQI--VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIP 219
E+ +Q + + +E DW++ I + A I + ++ L + R LYELL H IP
Sbjct: 241 FESISMQNETIDTNSDVGKLELDWEVIITNMANNIKAHRTITTLSKSRIVLYELLSHCIP 300
Query: 220 VNVLFKYLLEGL--LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
+ K LL L L ++ L + + +A++F+ R+ G+K IFH+E ++A M Q
Sbjct: 301 ARTILKTLLFDLVNLFVDNARLVQELVALASIFDERLSLGTKSIFHLEGFIAKSMVAIDQ 360
Query: 278 FM 279
F+
Sbjct: 361 FI 362
>gi|71033883|ref|XP_766583.1| replication factor C subunit 5 [Theileria parva strain Muguga]
gi|68353540|gb|EAN34300.1| replication factor C subunit 5, putative [Theileria parva]
Length = 319
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 165/311 (53%), Gaps = 41/311 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELY 60
LW+DK+ P NL H + L ++ + G+ PH LFYGPSG+GKK RI+A L+ ++
Sbjct: 2 LWIDKHCPKNLNDFTSHKDLSELLLKIVNKSHGELPHFLFYGPSGSGKKCRILATLRSVF 61
Query: 61 GPVI------------------------ILNETDHLTREAQQALRRTMEKYITTCRLILC 96
G + ++ + D L++EAQ ALRRTME I R+ L
Sbjct: 62 GNKVDKCRMLYEVYPQHLLLQTFFRKDLLIEDADTLSQEAQAALRRTMETCIKNARMFLH 121
Query: 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---IPPEFALRLAQQSDR 153
+S+++ +RSRCLCIR+ + T++EIV +L NIC E +T + +A+ S R
Sbjct: 122 VRQLSRIMAPLRSRCLCIRVRSHTNDEIVGILRNICNSEDITPSQASDQMLRNIAESSKR 181
Query: 154 NLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK----------KL 203
NLRR+IL+ E + F ++ + W+ + + ++S Q+P +L
Sbjct: 182 NLRRSILILET--IAMGGFTLETKNFMMPWEKNVTQIVQSVLSSQTPSTYETIFRIFFRL 239
Query: 204 LEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFH 263
VR ++Y+LLV IP +++ + +++ L+ L +AA F H + GSK I+H
Sbjct: 240 SAVRPQIYDLLVCCIPGDLILETIVDQLVTKVKPSLVPTVFHLAAHFSHTMKLGSKDIWH 299
Query: 264 IEAYVASFMAM 274
IEA++A M++
Sbjct: 300 IEAFLAQTMSL 310
>gi|367006843|ref|XP_003688152.1| hypothetical protein TPHA_0M01430 [Tetrapisispora phaffii CBS 4417]
gi|357526459|emb|CCE65718.1| hypothetical protein TPHA_0M01430 [Tetrapisispora phaffii CBS 4417]
Length = 356
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 171/350 (48%), Gaps = 78/350 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFH----------CKQANHLRNLLKEG----------------- 33
MSLWVDKYRP + KL + QA L +LL G
Sbjct: 1 MSLWVDKYRPKTISKLSHNDSLTEFLTSLTVQARDLPHLLLYGPNGSGKKTRCMALLEAI 60
Query: 34 ----------------------------DFPHLLFYGPSGAGKKTRIM--ALLKELYG-- 61
P+ L PS G RI+ LLKE+
Sbjct: 61 FGPGVYRLKIDVRQFVTPSNKKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
Query: 62 ---------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
+I+NE D LTR+AQ ALRRTMEKY RLI+ +SMS +I
Sbjct: 121 QVDFQDSKDGLAHRYKCVIINEADSLTRDAQAALRRTMEKYSKNIRLIMICDSMSSIISP 180
Query: 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEA- 164
I+SRCL IR APT EEIV++L +I +KEG+T+ + L ++A ++D NLR AILM E+
Sbjct: 181 IKSRCLMIRSSAPTDEEIVNILKDIAEKEGVTVASDDILKKVAIEADGNLRVAILMLESM 240
Query: 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF 224
+ + + + I++PDW + I A I E+S L+E R LY+LL H IP V+
Sbjct: 241 ALTNELSLKSNTVIIKPDWLVVILKLANKIQRERSVACLVECRAVLYDLLAHCIPARVIL 300
Query: 225 KYLLEGLL--ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ L LL + S +K+ I +A++F+ R+ G+K IFH+E ++A M
Sbjct: 301 ENLTFALLKQSGNSSSVKADIINIASIFDERLSLGNKVIFHLEGFIAKVM 350
>gi|118353287|ref|XP_001009848.1| Replication factor C subunit, putative [Tetrahymena thermophila]
gi|89291681|gb|EAR89669.1| Replication factor C subunit, putative [Tetrahymena thermophila
SB210]
Length = 358
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 137/216 (63%), Gaps = 3/216 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VII+NE D LT EAQ +LRRTMEKYI CRLIL A ++ +VI +RSRCL IR+ AP+ +
Sbjct: 134 VIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRSRCLLIRVAAPSEQ 193
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
++ +V+ + ++ L IP + A + A+ D NLR IL + K+ + + ++ EP+
Sbjct: 194 DVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQTQKLLKSTYNNSMEVQEPE 253
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD---L 239
WK I++ A +I Q+P KL E+R++ Y+LLV+ IP +++ K L+ LL D +
Sbjct: 254 WKKEIKNIAGIIKEHQNPAKLKEIRSKFYDLLVNCIPGDIIIKNLMYSLLDLIDQNDVHT 313
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
K + I AA E+ ++ GSKP+FH+EA+ A M Y
Sbjct: 314 KQEIIYYAAHHENLMNMGSKPVFHLEAFAAQCMLSY 349
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVD+ RP +L KLD+H L+ L DFPHLL YGP+GAGKKTR MA L+E+YG
Sbjct: 4 LWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQEVYGN 63
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
+ H + ++ + T I+ +N V PA
Sbjct: 64 GV------HKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPA 101
>gi|239610553|gb|EEQ87540.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis ER-3]
Length = 354
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 166/373 (44%), Gaps = 113/373 (30%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLL----------------------KEGDFPHL 38
M+L VD+ RP NL L +H + L++L+ + GDFPHL
Sbjct: 1 MALLVDRLRPRNLDALTYHHDLSARLKSLVSIQNKSYIPQSIPTNDRARWQAQSGDFPHL 60
Query: 39 L-------------------FYGP-----------------------------------S 44
L +GP S
Sbjct: 61 LVYGPSGAGKKTRIIATLRELFGPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLEITPS 120
Query: 45 GAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYITT 90
G R++ LLKE+ V+++NE DHLTR+AQ ALRRTMEKY
Sbjct: 121 DVGNYDRVVVQELLKEVAQTQQVDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPN 180
Query: 91 CRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ 150
RLIL ANS + +I IRSR L +R+ APT EI L KKEG P R+A++
Sbjct: 181 LRLILLANSTANIIAPIRSRTLLVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAKE 240
Query: 151 SDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRL 210
S RNLRRA+LM EA Q D I PDW+ I A I++E+SP ++L+ T
Sbjct: 241 SGRNLRRALLMLEAIYAQNEKVTDDTPIPPPDWEALISLIADEIMAERSPARILQTLT-- 298
Query: 211 YELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVAS 270
FK L+ D LK + I+ AA +EHRI GSK IFH+EA+VA
Sbjct: 299 -------------FK-----LIPKIDDALKPEVIKWAAFYEHRIKLGSKVIFHLEAFVAK 340
Query: 271 FMAM---YLQFME 280
FM + YL +E
Sbjct: 341 FMRVLESYLMGLE 353
>gi|226286726|gb|EEH42239.1| replication factor C subunit 5 [Paracoccidioides brasiliensis Pb18]
Length = 354
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 157/338 (46%), Gaps = 88/338 (26%)
Query: 9 RPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYG------- 42
RP +L L +H + + L++L + GDFPHLL +G
Sbjct: 15 RPRSLDALTYHRELSARLKSLAQSGDFPHLLVYGPSGAGKKTRIIATLKELFGTGVEKIK 74
Query: 43 ----------------------------PSGAGKKTRIMA--LLKELYGP---------- 62
PS G R++ LLKE+
Sbjct: 75 IDARVFQTSTNRKLEFNIVSSVYHLEITPSDVGNYDRVVVQELLKEVAQTQQVDLSAKQR 134
Query: 63 --VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPT 120
V+++NE DHLTR+AQ ALRRTMEKY R+IL ANS + +I IRSR L +R+ APT
Sbjct: 135 FKVVVINEADHLTRDAQAALRRTMEKYSPNLRVILLANSTANIIAPIRSRTLLVRVAAPT 194
Query: 121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
EI VL KKE P R+A++S RNLRRA+LM EA Q D I
Sbjct: 195 EAEICQVLKLAGKKENWAEAPGLNKRIAKESGRNLRRALLMFEAIYAQNEKVTDDTPIPP 254
Query: 181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLK 240
PDW+ I A I++E+SP ++L+ T FK L+ D LK
Sbjct: 255 PDWEALISVIADEIMAERSPARILQTLT---------------FK-----LIPKMDDALK 294
Query: 241 SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ I+ +A +EHRI GSK IFH+EA+VA FM + F
Sbjct: 295 PEVIKWSAFYEHRIKLGSKVIFHLEAFVAKFMRVLESF 332
>gi|261195362|ref|XP_002624085.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis SLH14081]
gi|239587957|gb|EEQ70600.1| activator 1 38 kDa subunit [Ajellomyces dermatitidis SLH14081]
Length = 354
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 166/373 (44%), Gaps = 113/373 (30%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLL----------------------KEGDFPHL 38
M+L VD+ RP NL L +H + L++L+ + GDFPHL
Sbjct: 1 MALLVDRLRPRNLDALTYHHDLSARLKSLVSIQNKSYIPQSIPTNDRARWQAQSGDFPHL 60
Query: 39 L-------------------FYGP-----------------------------------S 44
L +GP S
Sbjct: 61 LVYGPSGAGKKTRIIATLKELFGPGVEKIKIDARVFQTSSNRKLEFNIVSSIYHLEITPS 120
Query: 45 GAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYITT 90
G R++ LLKE+ V+++NE DHLTR+AQ ALRRTMEKY
Sbjct: 121 DVGNYDRVVVQELLKEVAQTQQVDLSARQRFKVVVINEADHLTRDAQAALRRTMEKYSPN 180
Query: 91 CRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ 150
RLIL ANS + +I IRSR L +R+ APT EI L KKEG P R+A++
Sbjct: 181 LRLILLANSTANIIAPIRSRTLLVRVAAPTEAEICQALQVAEKKEGWAEAPGLNKRIAKE 240
Query: 151 SDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRL 210
S RNLRRA+LM EA Q D I PDW+ I A I++E+SP ++L+ T
Sbjct: 241 SGRNLRRALLMLEAIYAQNEKVTDDTPIPPPDWEALISLIADEIMAERSPARILQTLT-- 298
Query: 211 YELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVAS 270
FK L+ D LK + I+ AA +EHRI GSK IFH+EA+VA
Sbjct: 299 -------------FK-----LIPKIDDALKPEVIKWAAFYEHRIKLGSKVIFHLEAFVAK 340
Query: 271 FMAM---YLQFME 280
FM + YL +E
Sbjct: 341 FMRVLESYLMGLE 353
>gi|294656983|ref|XP_002770358.1| DEHA2D18722p [Debaryomyces hansenii CBS767]
gi|199431875|emb|CAR65712.1| DEHA2D18722p [Debaryomyces hansenii CBS767]
Length = 364
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 149/269 (55%), Gaps = 32/269 (11%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYGP------------------VIILNETDHLTRE 75
P+ L PS G R++ LLK++ V+I+NE D L+R+
Sbjct: 90 PYHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFSNQSKSASKHRFKVVIINEADSLSRD 149
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRTMEKY R+I+ N+ S +I I+SR L +RIPAP+H+EI ++L+NI KE
Sbjct: 150 AQAALRRTMEKYSANIRIIMICNTTSNIISPIKSRTLLVRIPAPSHKEISNILSNIADKE 209
Query: 136 GLTIPP-------EFALRLAQQSDRNLRRAILMCEASKVQQYPFQI---DQQIVEPDWKI 185
+ P EF ++++ SD NLR+A+L E +Q I D ++ DW++
Sbjct: 210 SVKFNPSNESKKQEFFDKVSKNSDSNLRKALLCFETISMQSESIAINNTDSAMIALDWEV 269
Query: 186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKS 243
I++ AK IIS ++ L +VR YELL H IP ++ K LL L+ +N + +
Sbjct: 270 IIQNLAKSIISNRTVANLAKVRVVFYELLSHCIPPRIILKKLLFNLIEVSNSNESITQSL 329
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+E+ A+F+ R+ G K IFH+E +VA M
Sbjct: 330 VEIGAVFDERLSLGQKSIFHLEGFVAKSM 358
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L++L +H +L L GDFPHLL YGP G+GKKTRI L EL+
Sbjct: 1 MSLWVDKYRPKSLEQLSYHESITQNLAALASTGDFPHLLVYGPPGSGKKTRIYCTLHELF 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPQV 64
>gi|299749385|ref|XP_001838721.2| DNA clamp loader [Coprinopsis cinerea okayama7#130]
gi|298408416|gb|EAU83080.2| DNA clamp loader [Coprinopsis cinerea okayama7#130]
Length = 314
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 141/259 (54%), Gaps = 34/259 (13%)
Query: 43 PSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS AG R++ +LKE+ V+++NE D L+R+AQ ALRRTMEKY+
Sbjct: 75 PSEAGNYDRLIVQEILKEIAQTQQVDLNAKQRFKVVVINEADSLSRDAQAALRRTMEKYM 134
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
+ R+ILCANS S++I I+SRCL IR+ AP EE+ +VL + ++ G +PPE A +
Sbjct: 135 SNMRIILCANSTSKLIAPIKSRCLLIRVAAPNEEEMATVLNYVARRAGFDLPPEAAKEII 194
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
S NLR+AIL+ EA K+Q I +PDW+ Y A LI+ EQSP +++
Sbjct: 195 DDSGGNLRKAILVLEALKMQSPDLTGPLTIAKPDWETYCHKVADLIVMEQSPAQVMAT-- 252
Query: 209 RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+ E ++ D LK+ + AA +E R+ G+K IFH+EA+V
Sbjct: 253 ------------------IAERVVEKVDESLKADVMHWAAFYEVRMRLGNKKIFHLEAWV 294
Query: 269 ASFMAMYLQFMEDTLSNLF 287
M++Y F D + F
Sbjct: 295 IKVMSLYKHFFYDIDMSAF 313
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 33/61 (54%), Gaps = 22/61 (36%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVD+ GDFPH+LFYGPSGAGKKTRI LK+L+
Sbjct: 1 MSLWVDQ----------------------AASGDFPHMLFYGPSGAGKKTRISCTLKQLF 38
Query: 61 G 61
G
Sbjct: 39 G 39
>gi|340504015|gb|EGR30507.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 355
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 139/219 (63%), Gaps = 4/219 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+ILNE D LT EAQ +LRRTMEKY+ CRLILC ++ +VI +RSRCL IR+PAP
Sbjct: 134 VVILNEVDRLTLEAQASLRRTMEKYVNRCRLILCCENIGRVIQPLRSRCLLIRVPAPDEG 193
Query: 123 EIVSVLTNICKKEGL-TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
+I+ V+ I +E L I E ++ RNLR IL + K+ + F D V+
Sbjct: 194 DIIKVVKKIQNQENLPNISEEICRKMGDGFGRNLRDIILNLQMQKLNKSAF--DGGSVKS 251
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD-LK 240
+WK I A+ I +QSP KL E+R + Y+LLV+ IP +V+ K L++ L+ +++ ++
Sbjct: 252 EWKKEIGKIAQGIKDQQSPFKLKEIRGQFYDLLVNCIPGDVIIKQLMQELIGIVNNNFIQ 311
Query: 241 SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+ I AA E++++KGSK IFH+EA+VA M +Y +++
Sbjct: 312 QEFIYWAAYHENQMNKGSKTIFHLEAFVAQCMLVYKKYI 350
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 21/174 (12%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVD+YRP L +LD+H K L++L DFPHLLFYGP+GAGKKTRIM+ L E+YG
Sbjct: 4 LWVDQYRPKQLSQLDYHEKLTETLKSLAHSEDFPHLLFYGPNGAGKKTRIMSFLHEVYGN 63
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA---IRSRCLC---IRI 116
+ H + ++ + + T I+ +N V PA + R + I+
Sbjct: 64 GV------HKIKAEEREFKVSSTSSATCEINIIYSNYHIDVTPADAEVYDRVIIQKLIKE 117
Query: 117 PAPTHE-------EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163
A TH+ V+ N + LT+ + +LR + N R IL CE
Sbjct: 118 VASTHQLDPTSQKSFKVVILNEVDR--LTLEAQASLRRTMEKYVNRCRLILCCE 169
>gi|406701715|gb|EKD04829.1| DNA clamp loader [Trichosporon asahii var. asahii CBS 8904]
Length = 201
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 122/191 (63%), Gaps = 13/191 (6%)
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTMEKY+T RLI+CANS S++I IRSRCL +R+ APT +E+ KKE T+PP
Sbjct: 12 RTMEKYMTNMRLIMCANSTSKIIAPIRSRCLLVRVAAPTDDEV-------AKKERFTLPP 64
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
+ + + +D NLR+A+L+ EA ++Q D + +PDW++Y A+ I+ EQSP+
Sbjct: 65 SASDAIIEAADGNLRKALLVMEAMRMQNPDLNGDVDVAKPDWELYCAKIAESIMQEQSPQ 124
Query: 202 KLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPI 261
+LL++R ++YELL H IP V+ K + +GL+A D LK + AA H GSK I
Sbjct: 125 RLLDIRGKIYELLSHCIPPAVVLKTIADGLVARVDDPLKPVVVHWAA------HYGSKKI 178
Query: 262 FHIEAYVASFM 272
FHIEA++A M
Sbjct: 179 FHIEAFIAKIM 189
>gi|344228882|gb|EGV60768.1| hypothetical protein CANTEDRAFT_111192 [Candida tenuis ATCC 10573]
Length = 359
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+I+NE D LTR+AQ ALRRTMEKY RLI+ +N+ S +IP I+SR L +RIPAP+
Sbjct: 138 VVIINEADSLTRDAQAALRRTMEKYSANIRLIMISNTTSNIIPPIKSRTLLVRIPAPSVA 197
Query: 123 EIVSVLTNICKKEGL--TIPP---EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
+I ++L ++ KE + T P F ++A SD+NLRRA+L E + D Q
Sbjct: 198 DITAILADVATKESVHFTADPVQSGFLSQVAANSDQNLRRALLSFETISMSNASVACDGQ 257
Query: 178 --IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC 235
+V DW++ I++ + I + +S L + R YELL H IP ++ K +L LL C
Sbjct: 258 NAVVTLDWEVIIKNVSSSIYTNRSVSNLAKTRVVFYELLAHCIPARIILKGVLFELLRLC 317
Query: 236 DSDLKSKS-IEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
++ K++ +E+ +MF+ R+ GSK IFH+E +VA M
Sbjct: 318 NNHSKAQQLVEIGSMFDERLSLGSKAIFHLEGFVAKAM 355
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 43/62 (69%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L L +H L+ L GDFPHLL YGPSG+GKKTR+ A L EL+
Sbjct: 1 MSLWVDKYRPRRLDALSYHAPITASLKALASTGDFPHLLVYGPSGSGKKTRVYATLHELF 60
Query: 61 GP 62
GP
Sbjct: 61 GP 62
>gi|335748611|gb|AEH58814.1| replication factor C subunit 3 [Karenia brevis]
Length = 354
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 174/350 (49%), Gaps = 71/350 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWVDK+RP +L ++D+H + L+ L +G+ PH+LF YGP
Sbjct: 4 LWVDKHRPKSLDEMDYHHDLSARLKKLAAQGNQPHMLFVGPSGAGKSTRVYAMLRELYGP 63
Query: 44 --------------------------------------SGAGKKTR--IMALLKELYG-- 61
S G K R +M L+KE+
Sbjct: 64 GTDMIKVETKSVAPNPSSPSNTVDIQVVVSNYHLVLTPSDVGNKDRAVVMQLIKEVAAHP 123
Query: 62 -------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++ + +AQ LRRTMEKY+ TCR+IL +S S++I +RSRC +
Sbjct: 124 PLGNHTFKVVVIEDAGASNPQAQAPLRRTMEKYMKTCRIILMCDSASKIIAPLRSRCCAV 183
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
R+ AP++E++ VL + E L +PP FA ++A++S R+LRRA+L+ E++ Q F
Sbjct: 184 RVGAPSNEDVQKVLQKVASAESLQLPPAFAFKVAEKSGRDLRRALLLLESAHAQANQFSK 243
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
D + + W I +K I+ EQSPK +EVR LYELL +P + + K L+ L+A+
Sbjct: 244 DGILPQEGWDGAIEKVSKKILQEQSPKCAMEVRGMLYELLAACLPPDFILKQLMFRLIAD 303
Query: 235 C-DSDLKSKSIEMAAMFEHRIHKGSKPIFHIE--AYVASFMAMYLQFMED 281
D LK K+ AA FE + +GSK IF +Y AS++ Q ++
Sbjct: 304 QRDDALKQKAFAAAAHFESTMRQGSKDIFPSGRLSYCASWLTSKPQHSQE 353
>gi|150864072|ref|XP_001382764.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054]
gi|149385328|gb|ABN64735.2| DNA replicationn factor C [Scheffersomyces stipitis CBS 6054]
Length = 363
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 135/223 (60%), Gaps = 11/223 (4%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE D L+R+AQ ALRRTMEKY + RLIL NS+S +IP I+SR L +RIP+P+
Sbjct: 137 VVVINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIPPIKSRTLLVRIPSPSTT 196
Query: 123 EIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAILMCEASKVQQYPFQID 175
I S+L + KKEG+ ++ + LA ++RNLR+A+L E +Q Q+D
Sbjct: 197 AISSILGQVAKKEGIKFSSSNELDIQKYLVTLADTANRNLRKALLSFETVAMQNETIQLD 256
Query: 176 QQ---IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ IV DW+ I++ + I ++ L VR LYELL H IP ++ K L+ L+
Sbjct: 257 NKTLTIVTLDWEEIIKNMSNTIRINRNVATLASVRVVLYELLAHCIPPRIILKTLMFNLI 316
Query: 233 ANCDSD-LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
N D + S+ +++ ++F+ R+ GSK IFH+E +VA M +
Sbjct: 317 KNFKDDAVISQLVDLGSVFDERLSLGSKSIFHLEGFVAKSMVV 359
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L FH + +LR L + GDFPHLL YGPSGAGKKTRI A L E++
Sbjct: 1 MSLWVDKYRPKTLDQLSFHDSISQNLRALARSGDFPHLLIYGPSGAGKKTRIYATLNEIF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|448079909|ref|XP_004194496.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
gi|359375918|emb|CCE86500.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
Length = 363
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+I+NE D L+++AQ ALRRTMEKY RLIL +N+ S +I I+SR L +R+PAP+
Sbjct: 137 VVIINEADSLSKDAQAALRRTMEKYSANIRLILVSNTTSGIIAPIKSRTLLVRVPAPSET 196
Query: 123 EIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAILMCEASKVQQYPFQID 175
+I +L+ I KKEGL P E +A S++NLRR +L E +Q ID
Sbjct: 197 DIADILSGIAKKEGLKFKPDTDNAKQELFRNIALHSEKNLRRTLLCFETLSMQSETINID 256
Query: 176 QQ---IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ +V DW++ I + AK I++ +S + + R LYELL H IP + K LL L+
Sbjct: 257 KNTLSLVSIDWEVIIANLAKSIVANKSVANIAKSRVVLYELLSHCIPARTILKRLLFDLI 316
Query: 233 A--NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ N + ++ + E AA+F+ R+ G K IFH+E +VA M
Sbjct: 317 SLNNYNDNITQELTEYAALFDERLSLGQKSIFHLEGFVARAM 358
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H +L+ L GDFPHLL YGP G+GKKTRI L ELY
Sbjct: 1 MSLWVDKYRPKKLDQLSYHNGLTENLKALASTGDFPHLLVYGPPGSGKKTRIYGTLYELY 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPQV 64
>gi|169609148|ref|XP_001797993.1| hypothetical protein SNOG_07660 [Phaeosphaeria nodorum SN15]
gi|160701791|gb|EAT85126.2| hypothetical protein SNOG_07660 [Phaeosphaeria nodorum SN15]
Length = 216
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 122/210 (58%), Gaps = 14/210 (6%)
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEKY RLIL ANS S +I IRSR L +R+ APT EI SVL N+ KKEG
Sbjct: 1 MEKYSPNLRLILLANSTSNIIAPIRSRTLLVRVAAPTETEICSVLKNVGKKEGWKEVESL 60
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ--------------IVEPDWKIYIRD 189
R+A+ S RNLR+A+LM EA Q+Y F I + I PDW+ I
Sbjct: 61 NQRIAKDSGRNLRKALLMFEAVHAQKYVFSIRRHGCCEGTEKITDATHIPPPDWEALIEQ 120
Query: 190 TAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAM 249
A+ I+ E+SP++LL+VR LY+LL H I + K L L+ D LK + I+ AA
Sbjct: 121 IARQIVEERSPQRLLQVRASLYDLLSHCIDSTTIIKTLTWKLIPKTDDALKPEVIKWAAF 180
Query: 250 FEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
+EHR GSK IFH+EA+VA +M +Y +++
Sbjct: 181 YEHRCKMGSKQIFHLEAFVAKYMRLYERYV 210
>gi|406602446|emb|CCH45987.1| putative replication factor C subunit 3 [Wickerhamomyces ciferrii]
Length = 344
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 164/337 (48%), Gaps = 65/337 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG--------------------------- 33
MSLWVDKYRP+ L +D+H + L+ L+ G
Sbjct: 1 MSLWVDKYRPHTLDTIDYHFDVSKRLKALVVYGPSGAGKKTRVIAVLHELFGAGVEKMKI 60
Query: 34 ------------------DFPHLLFYGPSGAGKKTRIMA--LLKELYGP----------- 62
P+ + PS G R++ LLKE+
Sbjct: 61 DVRTFTTSTNRKLEFNVVSSPYHMEITPSDLGNNDRVVIQDLLKEIAQTEQVDFSGKHRF 120
Query: 63 -VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH 121
V+I+NE D L+R+AQ ALRRTMEKY RL+L +N+ S +I I+SR L IRI AP
Sbjct: 121 KVVIINEADSLSRDAQAALRRTMEKYSKNIRLVLISNTTSNIIAPIKSRTLLIRISAPNL 180
Query: 122 EEIVSVLTNICKKEGLTIPP-----EFAL-RLAQQSDRNLRRAILMCEASKVQQYPFQID 175
++I +L + +K+ +++P E L R+A S RNLRRA+L EA +Q +
Sbjct: 181 QDITKILDKLSEKQEVSLPSSQEERELILNRVAIASKRNLRRALLNFEALVMQNQELKTT 240
Query: 176 QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC 235
++ DW+ I A I +++ ++ RT YEL+ H IP ++ K L LL
Sbjct: 241 TPMITLDWEGVILKLASNISRDRNVARISSSRTVFYELISHCIPPKLILKNLTFDLLKLV 300
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ ++K +E+A++F+ R+ G+K IFH+E +VA M
Sbjct: 301 NDNIKPSIVELASIFDERLSLGTKSIFHLEGFVAKTM 337
>gi|50304249|ref|XP_452074.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641206|emb|CAH02467.1| KLLA0B12221p [Kluyveromyces lactis]
Length = 355
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 131/211 (62%), Gaps = 2/211 (0%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+I+NE D LTR+AQ ALRRTMEKY RLI+ +SMS +I I+SRCL +R+P+P+ +E
Sbjct: 138 VIINEADSLTRDAQAALRRTMEKYSGNIRLIMLCDSMSSIIAPIKSRCLLVRVPSPSLQE 197
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIVEPD 182
VS+L + C KE +T R+A S NLR ++L E++ +Q + + D + PD
Sbjct: 198 TVSILQDCCSKEKITAEGNCLERIANLSKGNLRMSLLALESTSLQNELHLRNDTPLNRPD 257
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD-LKS 241
W++ I A+ I+ E++ L+E R+ Y+LL H IP + L LL++ SD LK
Sbjct: 258 WQLVIHKMARKILKERTVNNLVECRSINYDLLAHCIPAKTIVHELTTQLLSDAQSDPLKL 317
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
I+ A F+HR++ G+K I+H+E ++A M
Sbjct: 318 AIIDTACTFDHRLNLGNKAIYHLEGFIARTM 348
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP LQ L ++ + N L +L ++ D PHLLFYGP+GAGKKTR MALL+E+
Sbjct: 1 MSLWVDKYRPKTLQSLSYNEELTNQLYSLTRQPQDLPHLLFYGPNGAGKKTRCMALLQEI 60
Query: 60 YGPVI 64
+G +
Sbjct: 61 FGSGV 65
>gi|448084401|ref|XP_004195594.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
gi|359377016|emb|CCE85399.1| Piso0_004995 [Millerozyma farinosa CBS 7064]
Length = 363
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 128/222 (57%), Gaps = 12/222 (5%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+I+NE D L+++AQ ALRRTMEKY RLIL +N+ S +I I+SR L +R+PAP+
Sbjct: 137 VVIINEADSLSKDAQAALRRTMEKYSANIRLILVSNTTSGIIAPIKSRTLLVRVPAPSET 196
Query: 123 EIVSVLTNICKKEGLTIPP-------EFALRLAQQSDRNLRRAILMCEASKVQQYPFQID 175
+I +L+ I KKEGL P E +A ++RNLRR +L E +Q ID
Sbjct: 197 DIADILSGISKKEGLKFKPDTDNAKQELFRNIALHAERNLRRTLLCFETLSMQSDTINID 256
Query: 176 QQ---IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ +V DW++ I + AK I + +S + + R LYELL H IP + K LL L+
Sbjct: 257 KNTLSLVSIDWEVIISNLAKSIAANKSVANIAKSRVVLYELLSHCIPARTILKRLLFDLI 316
Query: 233 A--NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
N + + + E AA+F+ R+ G K IFH+E +VA M
Sbjct: 317 GLNNYNDKITQELTEYAALFDERLSLGQKSIFHLEGFVARAM 358
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H +L+ L GDFPHLL YGP G+GKKTRI L ELY
Sbjct: 1 MSLWVDKYRPKKLDQLSYHNGLTENLKALASTGDFPHLLVYGPPGSGKKTRIYGTLYELY 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPQV 64
>gi|398364719|ref|NP_009644.3| replication factor C subunit 5 [Saccharomyces cerevisiae S288c]
gi|586518|sp|P38251.1|RFC5_YEAST RecName: Full=Replication factor C subunit 5; Short=Replication
factor C5; AltName: Full=Activator 1 40 kDa subunit
gi|476048|emb|CAA55595.1| YBR0810 [Saccharomyces cerevisiae]
gi|536354|emb|CAA85036.1| RFC5 [Saccharomyces cerevisiae]
gi|841471|gb|AAC49065.1| Rfc5p [Saccharomyces cerevisiae]
gi|51013797|gb|AAT93192.1| YBR087W [Saccharomyces cerevisiae]
gi|151946482|gb|EDN64704.1| replication factor C subunit 5 [Saccharomyces cerevisiae YJM789]
gi|190408751|gb|EDV12016.1| replication factor C subunit 5 [Saccharomyces cerevisiae RM11-1a]
gi|207347704|gb|EDZ73792.1| YBR087Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274035|gb|EEU08949.1| Rfc5p [Saccharomyces cerevisiae JAY291]
gi|285810423|tpg|DAA07208.1| TPA: replication factor C subunit 5 [Saccharomyces cerevisiae
S288c]
gi|290878103|emb|CBK39162.1| Rfc5p [Saccharomyces cerevisiae EC1118]
gi|323305938|gb|EGA59673.1| Rfc5p [Saccharomyces cerevisiae FostersB]
gi|323334562|gb|EGA75936.1| Rfc5p [Saccharomyces cerevisiae AWRI796]
gi|323349712|gb|EGA83927.1| Rfc5p [Saccharomyces cerevisiae Lalvin QA23]
gi|349576467|dbj|GAA21638.1| K7_Rfc5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365767135|gb|EHN08623.1| Rfc5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300928|gb|EIW12017.1| Rfc5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 354
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 146/260 (56%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP N++ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>gi|353234656|emb|CCA66679.1| probable RFC5-DNA replication factor C, 40 KD subunit
[Piriformospora indica DSM 11827]
Length = 325
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE D LTR+AQ ALRRTMEKY+ R+ILC+ S S++I I+SRCL +R+ APT +
Sbjct: 94 VVVINEADSLTRDAQAALRRTMEKYMANMRIILCSTSTSKLIAPIKSRCLLVRVGAPTDD 153
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ---IDQQIV 179
E+ SVL + KKE T+ E A +A+ +D N R+A+LM EA K+Q + Q
Sbjct: 154 EMTSVLQYVAKKERFTLSDEVASNIARDADGNTRKAVLMLEAMKMQHPNLSETTMSIQPA 213
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK 225
+PDW+ Y A +I+ EQ+PK++++VR +LYELL H IP +V+ K
Sbjct: 214 KPDWETYCHHVADMIVQEQTPKRVMDVRGKLYELLSHCIPPHVVLK 259
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYG 61
+LFYGPSGAGKKTRI L+EL+G
Sbjct: 1 MLFYGPSGAGKKTRIAGTLRELFG 24
>gi|344303368|gb|EGW33642.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 360
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 148/270 (54%), Gaps = 27/270 (10%)
Query: 36 PHLLFYGPSGAGKKTRIMA--LLKELYGP------------------VIILNETDHLTRE 75
P+ L PS G R++ LLK++ ++I+NE D L+R+
Sbjct: 90 PYHLEITPSDMGNNDRVVIQDLLKDIASTEQVDFNNQSSSKTKHRFKIVIINEADSLSRD 149
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRTMEKY + RLIL NS+S +I I+SR L +RIP+P+ +I S+L+NI KE
Sbjct: 150 AQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSITDINSILSNISVKE 209
Query: 136 GLTIPPE----FALRLAQQSDRNLRRAILMCEASKVQQYPF--QIDQQIVEPDWKIYIRD 189
G+ F +++ S+RNLRRA+L E +Q + + I+ DW++ I++
Sbjct: 210 GIKFSSNDLEPFYTKVSTASNRNLRRALLSFETLTMQNETIKPETNLSIINLDWEVIIKN 269
Query: 190 TAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC-DSDLKSKSIEMAA 248
A I + ++ L ++RT YELL H IP ++ K LL L+ D + + + +A+
Sbjct: 270 IANNIKTARNVATLAKIRTVFYELLSHCIPARIILKTLLFNLIEIIPDVRVVQELVNLAS 329
Query: 249 MFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+F+ R+ G K IFH+E +VA M Q+
Sbjct: 330 VFDERLSLGQKSIFHLEGFVAKSMVTIDQY 359
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H L+ L K GDFPHLL YGPSGAGKKTRI L E++
Sbjct: 1 MSLWVDKYRPKTLDQLLYHDSITQSLKALSKSGDFPHLLIYGPSGAGKKTRIYCTLNEIF 60
Query: 61 GPVI 64
G +
Sbjct: 61 GSSV 64
>gi|323356056|gb|EGA87861.1| Rfc5p [Saccharomyces cerevisiae VL3]
Length = 354
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTXKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP N++ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L +L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLXSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>gi|156836873|ref|XP_001642477.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156113011|gb|EDO14619.1| hypothetical protein Kpol_264p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 356
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 142/260 (54%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +++NE D LTR+A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQESKDGLAHRYKCVVINEADSLTRDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +IP I+SRCL IR APT +E+V L + KKE
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSSIIPPIKSRCLMIRCSAPTDDEVVQNLMEVSKKEN 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEA-SKVQQYPFQIDQQIVEPDWKIYIRDTAKLI 194
L I L ++A +SD NLR +LM E+ + + + I+ PDW + I I
Sbjct: 211 LQIESNDILNKIAIESDGNLRLGLLMLESMALTNELQLKSSTAIIRPDWLVVILKLTNKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS--DLKSKSIEMAAMFEH 252
E+S L+E R LY+LL H IP ++ + L LL N ++ +K+K I+ ++ F+
Sbjct: 271 QRERSVSSLIECRAILYDLLAHCIPPKIILEELTFSLLKNPENSDSIKTKIIDCSSTFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLALGNKAIFHLEGFIAKVM 350
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP L L + L++L + D PHLL YGP+G+GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPRTLDSLTHNGSLTELLKSLSHQPKDLPHLLLYGPNGSGKKTRCMALLESI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|401626895|gb|EJS44813.1| rfc5p [Saccharomyces arboricola H-6]
Length = 354
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 146/260 (56%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ NSMS +I I+SRCL +R PAP+ EI +L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMICNSMSPIIAPIKSRCLLVRCPAPSDSEISKILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L ++A +S+ NLR ++LM E+ + + + I++PDW I I+ + I
Sbjct: 211 IHLETKDILQKIAYESNGNLRISLLMLESMALNNELTLKSSSPIIKPDWMIVIQKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP NV+ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANVILKELTFALLEVETLTAENKSSVIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PH+L YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHILLYGPNGTGKKTRCMALLESI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|449018306|dbj|BAM81708.1| replication factor C subunit 3 [Cyanidioschyzon merolae strain 10D]
Length = 386
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 129/221 (58%), Gaps = 3/221 (1%)
Query: 57 KELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI 116
K L V++L++ D LTREAQQALRRTMEKY TCRL+L A+S ++V+ +RSRCL IR+
Sbjct: 158 KRLPYKVVVLHDVDRLTREAQQALRRTMEKYAQTCRLVLIADSATRVLEPLRSRCLGIRV 217
Query: 117 PAPTHEEIVSVLTNICKK--EGLTIPPEFALRLA-QQSDRNLRRAILMCEASKVQQYPFQ 173
AP+ E+ +VL + ++ PPE L A + SD NLR A+L EAS +
Sbjct: 218 RAPSETELRTVLRQVWQRMVHSAESPPEALLDHAIRASDGNLRSALLSLEASYWTSKAGR 277
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
+ EPDW+ + A I EQ+P LL VR Y+LL H IPV+++ +L LL
Sbjct: 278 KGSALPEPDWRSICDEIADQIRKEQTPPSLLRVRALYYDLLTHCIPVDIILSMVLRRLLE 337
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L + AA +E+R GSK I H+EA+ A MA+
Sbjct: 338 RVPVALGQQLCFWAAEYEYRACMGSKAILHLEAFAAKCMAL 378
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVD+ RP + H + LR L + PHLLFYGP+G+GK+TR+ LL+ELYG
Sbjct: 17 LWVDRCRPTTFEACVVHKELNERLRRLSESPAHLPHLLFYGPAGSGKRTRVRLLLRELYG 76
Query: 62 PVIILNETDH 71
+ + +H
Sbjct: 77 IAVDHSHVEH 86
>gi|50513625|pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 146/260 (56%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+S+CL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP N++ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>gi|260942391|ref|XP_002615494.1| hypothetical protein CLUG_04376 [Clavispora lusitaniae ATCC 42720]
gi|238850784|gb|EEQ40248.1| hypothetical protein CLUG_04376 [Clavispora lusitaniae ATCC 42720]
Length = 386
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 143/268 (53%), Gaps = 29/268 (10%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYGP----------------VIILNETDHLTREAQ 77
PH L PS G R++ LLK++ ++++NE D LTR+AQ
Sbjct: 116 PHHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFASQGRPKHRFKIVLINEADSLTRDAQ 175
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEKY RLI+ N+++ +I I+SR L +RIPAP+ EI S+L+ + +KE +
Sbjct: 176 AALRRTMEKYSANIRLIMVCNTIANIIAPIKSRTLLVRIPAPSKGEIASILSGVAEKEAV 235
Query: 138 TI-PPE-------FALRLAQQSDRNLRRAILMCEASKVQQYPFQ---IDQQIVEPDWKIY 186
PP + +A+ SDRNLRRA+L E +Q Q ++ + DW++
Sbjct: 236 KFNPPNDDQARQVYLETVAEASDRNLRRALLSFETLCMQNETIQLKNLEAAAITLDWELI 295
Query: 187 IRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEM 246
I++ K I+SE L ++R YELL H IP ++ K L+ D +K +E+
Sbjct: 296 IQNITKSILSEPKVATLAKLRLTFYELLSHCIPARLILKMTALQLMERLDPAKGTKVLEI 355
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFMAM 274
AA F+ R+ G K IFH+E + A M +
Sbjct: 356 AATFDERLSLGQKSIFHLEGFAAKAMVV 383
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 43/61 (70%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L+ L +H L++L GDFPHLL YGPSGAGKKTRI L EL+
Sbjct: 27 MSLWVDKYRPKKLENLSYHDSITKSLQSLASSGDFPHLLVYGPSGAGKKTRIYTTLNELF 86
Query: 61 G 61
G
Sbjct: 87 G 87
>gi|366988537|ref|XP_003674035.1| hypothetical protein NCAS_0A10960 [Naumovozyma castellii CBS 4309]
gi|342299898|emb|CCC67654.1| hypothetical protein NCAS_0A10960 [Naumovozyma castellii CBS 4309]
Length = 356
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 144/263 (54%), Gaps = 24/263 (9%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +++NE + LTR+A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQESKDGLAHRYKCVVINEANSLTRDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I IRSRCL +R+PAP + EIVS+L N+ + E
Sbjct: 151 QAALRRTMEKYSRNIRLIMLCDSMSSIISPIRSRCLMVRVPAPVNNEIVSILGNVVEMEK 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + L ++A++ + NLR A+LM E+ + + ++ IV PDW + I + I
Sbjct: 211 INLENGSILNQIARECNGNLRTALLMLESMSLNNEMQLKVGTPIVRPDWLVVILKLSNKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD---SDLKSKSIEMAAMFE 251
E++ L+E R LY+LL H IP + + L LL N +K IE A++F+
Sbjct: 271 QREKTVGSLIECRAILYDLLAHCIPAKTILQELTLALLKNSGISKDKMKLGIIECASVFD 330
Query: 252 HRIHKGSKPIFHIEAYVASFMAM 274
R+ G+K IFH+E ++A M +
Sbjct: 331 ERLSLGNKAIFHLEGFIAKVMCI 353
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKE 58
MSLWVDKYRP L+ L H + L N L + D PHLLFYGP+G+GKKTR M LL+
Sbjct: 1 MSLWVDKYRPKTLKTLS-HTEPLTALLNSLSQQPKDLPHLLFYGPNGSGKKTRCMTLLES 59
Query: 59 LYG 61
++G
Sbjct: 60 IFG 62
>gi|403217005|emb|CCK71500.1| hypothetical protein KNAG_0H00850 [Kazachstania naganishii CBS
8797]
Length = 357
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 166/352 (47%), Gaps = 82/352 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG--DFPHL-------------------- 38
MSLWVDKYRP L++L+ H + HL L+E D PHL
Sbjct: 1 MSLWVDKYRPRTLKQLN-HSDELTHLLTSLQEQPRDLPHLLLYGPNGAGKKTRCMCLLES 59
Query: 39 LFYG----------------------------------PSGAGKKTRIM--ALLKELYG- 61
+F G PS G RI+ LLKE+
Sbjct: 60 IFGGGVYRLKIDVRHFVTPSNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119
Query: 62 ----------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105
+++NE LTR+AQ ALRRTMEKY RLI+ +SMS +I
Sbjct: 120 EQVDFENSKDGIAHRYKCVVINEAHSLTRDAQAALRRTMEKYSRNIRLIMICDSMSPIIA 179
Query: 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEA 164
IRSRC+ IR PAPT +E + +L + KE + + ++ +QS NLR A LM E+
Sbjct: 180 PIRSRCMLIRCPAPTDDETIKILAEVASKENVKVESGSVFQKIVEQSSGNLRVATLMLES 239
Query: 165 -SKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVL 223
S + ++ I++PDW + I + + E++ L+E R+ LY+LL H IP +
Sbjct: 240 MSLCNEMQLKMSTPILKPDWMVVISNIGVKVTRERNVACLVECRSILYDLLSHCIPAKTI 299
Query: 224 FKYLLEGLLANCDSDLKSKSIEM---AAMFEHRIHKGSKPIFHIEAYVASFM 272
+ L L+ + D K+K I++ A+ F+ R+ G+K IFH+E ++A M
Sbjct: 300 LQELTFALIKDTSLD-KTKRIDILSHASTFDERLALGNKVIFHLEGFLARVM 350
>gi|302657734|ref|XP_003020582.1| hypothetical protein TRV_05324 [Trichophyton verrucosum HKI 0517]
gi|291184430|gb|EFE39964.1| hypothetical protein TRV_05324 [Trichophyton verrucosum HKI 0517]
Length = 299
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 116/197 (58%), Gaps = 14/197 (7%)
Query: 43 PSGAGKKTRIMA--LLKELYGP------------VIILNETDHLTREAQQALRRTMEKYI 88
PS G R++ LLKE+ V+++NE DHLTR+AQ ALRRTMEKY
Sbjct: 68 PSDVGTYDRVVVQELLKEIAQTQQVDQSAKQRFKVVVINEADHLTRDAQAALRRTMEKYS 127
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
RLIL AN+ + +I IRSR L +R+PAP+ ++I VL KKEG P RLA
Sbjct: 128 PNMRLILLANTTANIIAPIRSRTLLVRVPAPSEDDICQVLKLAGKKEGWNDCPGLNKRLA 187
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRT 208
++S RNLRRA+LM EA Q + I PDW+ I A I++E+SP ++L+VR
Sbjct: 188 KESGRNLRRALLMFEAVHAQNEKVSDNTPIPPPDWEALISVVADEIMAERSPARILQVRA 247
Query: 209 RLYELLVHSIPVNVLFK 225
RLY+LL H IP + K
Sbjct: 248 RLYDLLTHCIPPTTILK 264
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
+ GDFPHLL YGPSGAGKKTRI+A LKELYGP +
Sbjct: 2 QSGDFPHLLVYGPSGAGKKTRIIATLKELYGPGV 35
>gi|354546913|emb|CCE43645.1| hypothetical protein CPAR2_212890 [Candida parapsilosis]
Length = 362
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 149/266 (56%), Gaps = 29/266 (10%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKEL-------YG---------PVIILNETDHLTREAQ 77
P+ L PS G R++ LLK++ +G V+I+NE D L+R+AQ
Sbjct: 90 PYHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFGNQSSKKHRFKVVIINEADSLSRDAQ 149
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEKY + RLIL NS+S +I I+SR L +RIP+P+ E+I S+L ++ +KE +
Sbjct: 150 AALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSIEDISSILGHVAEKEHV 209
Query: 138 TIPP-------EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIR 188
+F ++A S+RNLRR++L E +Q + Q ++ DW+ I+
Sbjct: 210 KFSSTNGQDVDQFYNQVATTSNRNLRRSLLAFETIYMQNETINVKQLHSVIVLDWETVIK 269
Query: 189 DTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL--LANCDSDLKSKSIEM 246
+ AK I + ++ L ++RT YELL H IP + K LL L LA + L + +++
Sbjct: 270 NMAKTITNSRTVATLAKLRTVSYELLSHCIPARTILKNLLFELINLAKGKTALIQEIVKI 329
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFM 272
A+ F+ R+ G K IFH+E +VA M
Sbjct: 330 ASTFDERLSLGQKSIFHLEGFVAKTM 355
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 45/64 (70%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H +LR L K GDFPHLL YGPSGAGKKTRI L E++
Sbjct: 1 MSLWVDKYRPKTLSQLSYHDSITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIF 60
Query: 61 GPVI 64
G +
Sbjct: 61 GSSV 64
>gi|443895521|dbj|GAC72867.1| replication factor C, subunit RFC3 [Pseudozyma antarctica T-34]
Length = 1296
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 125/217 (57%), Gaps = 30/217 (13%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE D L+R+AQ ALRRTMEKY+ RL+
Sbjct: 1103 VVVINEADSLSRDAQSALRRTMEKYMANLRLMR--------------------------- 1135
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+VLT++ KKE TIP ++ + NLR+A+L+ EA ++Q I +PD
Sbjct: 1136 ---TVLTHVAKKERFTIPDAVQTQICDDCNGNLRKAMLVLEALRMQSPDLSAGIGIAKPD 1192
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+IYI TA LI+S+ SP+ LL VR++LYELLVH+IP ++ K+L + L+ DS ++
Sbjct: 1193 WEIYITKTADLILSDPSPQNLLAVRSKLYELLVHAIPPTLILKHLTDNLVQKVDSQVRPA 1252
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
++ AA +E R GSK IFH+EA+VA+ M + F+
Sbjct: 1253 IVQKAAFYELRTRTGSKVIFHLEAFVAAVMHIQKSFL 1289
>gi|365982197|ref|XP_003667932.1| hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
gi|343766698|emb|CCD22689.1| hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
Length = 358
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 163/353 (46%), Gaps = 79/353 (22%)
Query: 1 MSLWVDKYRP-------------NNLQKLDFHCKQANHL------------------RNL 29
MSLWVDKYRP N L+ L K HL ++
Sbjct: 1 MSLWVDKYRPKTLKTLSHTESLTNVLKSLSHQPKDLPHLLMYGPNGSGRKTRCMALLESI 60
Query: 30 LKEGDF------------------------PHLLFYGPSGAGKKTRIM--ALLKELYG-- 61
G + P+ L PS G RI+ LLKE+
Sbjct: 61 FGSGIYRLKIDIRQFVTASNKKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME 120
Query: 62 ---------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
+I+N+ + LTR+AQ ALRRTMEKY RLI+ +SMS +I
Sbjct: 121 QVDFQDSNDGLAHRYKCVIINDANSLTRDAQAALRRTMEKYSRNIRLIMLCDSMSSIISP 180
Query: 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-LAQQSDRNLRRAILMCEA- 164
IRSRCL IR+PAP + EIV++L + KE + I L +A++S+ NLR A+LM E+
Sbjct: 181 IRSRCLMIRVPAPLNGEIVNILNEVASKENVKIENGSILNHIAKESNANLRVALLMLESM 240
Query: 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF 224
S + +++ I+ PDW + I I ++S L+E R LY+LL H IP +
Sbjct: 241 SLNNELNLKVNTPIIRPDWMVVILKLGNKIQKDKSVGCLIECRAILYDLLAHCIPAKTIL 300
Query: 225 KYLLEGLLAN---CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
+ L L+ N K IE +++F+ R+ G+K IFH+E ++A M +
Sbjct: 301 QELTFALIKNPNIVKDKYKIGIIESSSLFDERLSLGNKAIFHLEGFIARVMCI 353
>gi|149248680|ref|XP_001528727.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146448681|gb|EDK43069.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 362
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 149/266 (56%), Gaps = 29/266 (10%)
Query: 36 PHLLFYGPSGAGKKTRIMA--LLKEL-------YG---------PVIILNETDHLTREAQ 77
PH L PS G R++ LLK++ +G V+I+NE D L+R+AQ
Sbjct: 90 PHHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFGNQSSKRHRFKVVIINEADSLSRDAQ 149
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEKY + RLIL NS+S +I I+SR L +RIP+P+ EI +L ++ ++E +
Sbjct: 150 AALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVAEISLILHDVAQEEKV 209
Query: 138 TIPPE-------FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIR 188
F ++A S+RNLRRA+L E +Q + Q ++ DW++ IR
Sbjct: 210 KFSSTDQQALTGFYEQVATVSNRNLRRALLAFETICMQNETINVKQMHSVIVLDWELIIR 269
Query: 189 DTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL--LANCDSDLKSKSIEM 246
+ AK I + ++ L ++RT YELL H IP + K LL L L + L ++ +++
Sbjct: 270 NMAKSISTTRNVANLAKLRTATYELLSHCIPARTILKGLLFELIKLEKGKTKLIAEIVKI 329
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFM 272
A++F+ R+ G+K IFHIE ++A M
Sbjct: 330 ASIFDERLSLGTKSIFHIEGFIAKSM 355
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 44/61 (72%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H +L+ L K GDFPHLL YGPSGAGKKTRI A L ++
Sbjct: 1 MSLWVDKYRPKTLAQLSYHKDITQNLQALSKSGDFPHLLVYGPSGAGKKTRIYATLHAIF 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|365762051|gb|EHN03666.1| Rfc5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841849|gb|EJT44172.1| RFC5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 354
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 145/260 (55%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR P P+ EI +L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMICDSMSPIIAPIKSRCLLIRCPTPSDNEISKILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L ++A++S+ NLR ++LM E+ + + + I++ DW I I+ + I
Sbjct: 211 INLETKDILQKIARESNGNLRISLLMLESMALNNEMTLKSSSPIIKADWLIVIQKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP NV+ K + LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANVILKEITFALLDVETLNTGNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNDELTNFLKSLADQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|363755746|ref|XP_003648088.1| hypothetical protein Ecym_7452 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892124|gb|AET41271.1| hypothetical protein Ecym_7452 [Eremothecium cymbalariae
DBVPG#7215]
Length = 356
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 161/349 (46%), Gaps = 77/349 (22%)
Query: 1 MSLWVDKYRPNNL----------QKLDFHCKQANHLRNLL-------------------- 30
MSLWVDKYRP +L ++LD A L ++L
Sbjct: 1 MSLWVDKYRPKSLSSLSHSPILTKQLDALASSAKDLPHVLFYGPDGSGKKTRCMSLLAGI 60
Query: 31 -KEGDF-------------------------PHLLFYGPSGAGKKTRIM--ALLKELYG- 61
G F P+ L PS G R++ LLKE+
Sbjct: 61 FGSGVFKMKIDARQFVMQSNNRKLELNVISSPYHLEITPSDMGNNDRVVIQELLKEVAQM 120
Query: 62 ----------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105
I++NE D LTR+AQ ALRRTMEKY R+ + +SMS +I
Sbjct: 121 EQVDFQTTSDGLARRYKCIVINEADALTRDAQAALRRTMEKYSRNIRIFMLCDSMSNIIA 180
Query: 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
I+SRCL +R+PAP E+ ++ +C EG+T + +A+ S+ NLR A+L E+
Sbjct: 181 PIKSRCLVVRVPAPQTLEMAKIMETVCMSEGVTASEQKLQEIAEFSNGNLRLALLTLESM 240
Query: 166 KVQQYPFQIDQQI-VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF 224
Q D + ++PDW + I A I+ E+S L+E R LY+LL H IP N++
Sbjct: 241 CFQNDLKLTDSAVLIKPDWMVVILKLANKILKERSVGSLVECRAILYDLLSHCIPPNIIL 300
Query: 225 KYLLEGLLANCDS-DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
L+ GLL + S +K IE ++F+ R+ SK I+H+E ++ M
Sbjct: 301 HELVFGLLKSISSTQMKLAVIEWGSVFDERLALSSKAIYHLEGFLVRIM 349
>gi|300122545|emb|CBK23114.2| unnamed protein product [Blastocystis hominis]
gi|300122911|emb|CBK23918.2| unnamed protein product [Blastocystis hominis]
Length = 354
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 136/217 (62%), Gaps = 2/217 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L+E D+L+R AQ LRRTMEKY + CRLILC + S++I IRSRCLC+RI APT
Sbjct: 130 VVLLSEADNLSRNAQAGLRRTMEKYSSNCRLILCCENSSRIIAPIRSRCLCLRISAPTLS 189
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI-DQQIVEP 181
E++S+L C EGL++P R+AQ S+RNLRRA+L+ E++ + + IV
Sbjct: 190 EVLSILQRNCLNEGLSVPSSQLQRIAQASNRNLRRALLLLESNTAANGGGGLKGEDIVLM 249
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW+ ++ +I+++Q+P LLE+R + YELL IP +V+ K + L+ + S
Sbjct: 250 DWERFLESIVGIIVTKQNPAALLEIRGKYYELLARLIPASVILKRIASRLVDSTPSRATQ 309
Query: 242 KSI-EMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
I AA+++ ++ KG K I +EA+ A MA+ Q
Sbjct: 310 MEIVHWAAVYDQKMRKGGKEIVPLEAFTARCMALLAQ 346
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
L VDK RP L+++D+H + +L L +FPH+LFYGPSG GKKTRIMALL+E++G
Sbjct: 2 LLVDKQRPKTLEEMDYHKDMSINLMKLASSNEFPHMLFYGPSGCGKKTRIMALLREMFGS 61
Query: 63 VI 64
+
Sbjct: 62 GV 63
>gi|145504098|ref|XP_001438021.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405182|emb|CAK70624.1| unnamed protein product [Paramecium tetraurelia]
Length = 356
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 134/222 (60%), Gaps = 7/222 (3%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+I+NE D+LT+EAQ +LRRTMEKYI CR+IL S++++I IRSRCL IR+PAP
Sbjct: 135 VVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRCLLIRVPAPDQT 194
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
++ +L I + I + ++A S+ NLR AIL ++++V + DQ I +
Sbjct: 195 QVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQSTRVNNTCIKDDQNIAAQE 254
Query: 183 WKIYIRDTAKL-IISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
WK++I+ + I+ Q + + E+R + Y+LLV+ IPV+ + +L+G+L N D +
Sbjct: 255 WKLHIQHNIVMPIVKNQLVETMKEIREKFYQLLVNCIPVDRIMFEMLQGVL-NQYKDHAN 313
Query: 242 KS-----IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
K I+ A E+R +GSK I H+EA A +M + QF
Sbjct: 314 KIILYELIKSTAKCENRARQGSKGIVHLEALAAEYMTIIKQF 355
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 44/59 (74%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LW + +P +L LD+H + + LR L K DFPHLLFYGP+GAGKKTR++A LKE+YG
Sbjct: 5 LWTESTKPKSLDSLDYHSEISEILRKLAKNSDFPHLLFYGPNGAGKKTRVLAFLKEVYG 63
>gi|302412925|ref|XP_003004295.1| replication factor C subunit 5 [Verticillium albo-atrum VaMs.102]
gi|261356871|gb|EEY19299.1| replication factor C subunit 5 [Verticillium albo-atrum VaMs.102]
Length = 354
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 115/194 (59%), Gaps = 3/194 (1%)
Query: 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ 149
TC ANS + +I IRSR L +R+ APTH EI VL ++EG + +R+AQ
Sbjct: 160 TCASSSSANSTANIIAPIRSRTLLVRVAAPTHAEICDVLGQSAEREGWPVAKGLHMRIAQ 219
Query: 150 QSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTR 209
+S RNLRRA+LM EA Q +I PDW+ I AK I+ E +P ++L+VR +
Sbjct: 220 ESGRNLRRALLMYEAVHAQNEKVTDSTRIPPPDWEALIGQIAKEIMEEHTPARILQVRAK 279
Query: 210 LYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVA 269
LY+LL H IP + K L L+A D LK + I+ +A +EHRI G+K IFH+EA+VA
Sbjct: 280 LYDLLTHCIPATTILKTLTFKLVAMIDDALKPEVIKWSAYYEHRIRMGTKVIFHLEAFVA 339
Query: 270 SFM---AMYLQFME 280
FM +YL M+
Sbjct: 340 KFMRIIEIYLMSMD 353
>gi|254584388|ref|XP_002497762.1| ZYRO0F12914p [Zygosaccharomyces rouxii]
gi|238940655|emb|CAR28829.1| ZYRO0F12914p [Zygosaccharomyces rouxii]
Length = 352
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 132/212 (62%), Gaps = 3/212 (1%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+++NE D LTR+AQ ALRRTMEKY RLI+ +S+S +I I+SRC +R PAP ++E
Sbjct: 138 VVINEADSLTRDAQAALRRTMEKYSRNVRLIMLCDSVSSIISPIKSRCFMVRCPAPPNDE 197
Query: 124 IVSVLTNICKKEGLTIPPEFALR-LAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEP 181
V++L + KE + + + L+ +AQ+S+ NLR+A+LM E+ + + + I++P
Sbjct: 198 TVNILNYVASKEKVQLESDEVLKVIAQESEGNLRKALLMLESMALCNEMQLKKSTPIIKP 257
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW+ I A I E+S L+E R+ LY+LL H IP + + L LL N ++
Sbjct: 258 DWESVISKLATKIQKEKSVGCLVECRSFLYDLLAHCIPARTILQELTFALLRNSSNEKAK 317
Query: 242 KSI-EMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+I + +++F+ R+ G+KPI+H+E +VA M
Sbjct: 318 IAILQTSSIFDERLSLGNKPIYHLEGFVARAM 349
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + L+++ ++ D PHLL YGP+G+GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPRSLDTLSHNGHLTSVLQSISQQPRDLPHLLLYGPNGSGKKTRCMALLESI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|156083977|ref|XP_001609472.1| replication factor C 38 kDa subunit [Babesia bovis T2Bo]
gi|154796723|gb|EDO05904.1| replication factor C 38 kDa subunit [Babesia bovis]
Length = 349
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 161/345 (46%), Gaps = 76/345 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE---GDFPHLLFY------------------ 41
LW+DK+ P L +L H + N L L E G+ PHLLFY
Sbjct: 2 LWIDKHCPKRLDELTSH-RDVNALLTKLVEKSHGEIPHLLFYGPSGSGKKTRILATLRAV 60
Query: 42 -GPSGAGKKTRIMALLKE------------------------------------------ 58
GPS KT I++ +
Sbjct: 61 FGPSIDKVKTEIISNVDTSSEVVVCQSDHHIQIPCSDLGSRDRVIVQDIIRTLSASPSAS 120
Query: 59 ---LYGP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
+ GP V + + D L+ AQ ALRRTME YI R+IL N +S+++ +RSRCL
Sbjct: 121 NYFMKGPSFRVFLFEDADALSLPAQAALRRTMETYIKNARMILHVNQLSRIMLPLRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIP---PEFALRLAQQSDRNLRRAILMCEASKVQQ 169
CIR+ + T +EI ++L +ICK E + E R+A S RNLRRAIL E +
Sbjct: 181 CIRVGSHTIDEITTILRSICKIENVASAQSSDEVLRRIATSSGRNLRRAILTLETMTMGG 240
Query: 170 YPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE 229
YP ++ W+ ++ K ++S QSP + +R ++YELLV IP ++ + ++E
Sbjct: 241 YPGNTVDFLLP--WERNVQQIVKYLMSNQSPSAVGGIRPQVYELLVCCIPGEIILRSIVE 298
Query: 230 GLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L DL + + +AA F H + +GS+ I+HIEA V FMA+
Sbjct: 299 QLSRRVKPDLIPRIMHIAAHFSHTMKQGSRDIWHIEACVVQFMAL 343
>gi|448514010|ref|XP_003867042.1| Rfc5 hypothetical proteineteropentameric replication factor C
subunit [Candida orthopsilosis Co 90-125]
gi|380351380|emb|CCG21604.1| Rfc5 hypothetical proteineteropentameric replication factor C
subunit [Candida orthopsilosis Co 90-125]
Length = 362
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 147/266 (55%), Gaps = 29/266 (10%)
Query: 36 PHLLFYGPSGAGKKTRIMA--LLKEL-------YG---------PVIILNETDHLTREAQ 77
P+ L PS G R++ LLK++ +G V+I+NE D L+R+AQ
Sbjct: 90 PYHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFGNQNNRRHRFKVVIINEADSLSRDAQ 149
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEKY + RLIL NS+S +I I+SR L +RIP+P+ E I S+L ++ +KE +
Sbjct: 150 AALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVENISSILGHVAEKEHV 209
Query: 138 TIP-------PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIR 188
+F ++A S NLRR++L E +Q + Q ++ DW+I I+
Sbjct: 210 KFSSSNGQEIAQFYSQVATTSHCNLRRSLLAFETIYMQNETINVKQLHSVIVLDWEIVIK 269
Query: 189 DTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL--LANCDSDLKSKSIEM 246
+ AK I + ++ L ++RT YELL H IP + K LL L LA + L + +++
Sbjct: 270 NMAKTITTSRNVATLAKLRTVSYELLSHCIPARTILKNLLFELINLAAGKTALIQEIVKV 329
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFM 272
A+ F+ R+ G K IFH+E +VA M
Sbjct: 330 ASTFDERLSLGQKSIFHLEGFVAKIM 355
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 45/64 (70%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H +LR L K GDFPHLL YGPSGAGKKTRI L E++
Sbjct: 1 MSLWVDKYRPKTLSQLSYHESITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIF 60
Query: 61 GPVI 64
G +
Sbjct: 61 GSSV 64
>gi|195578467|ref|XP_002079087.1| GD22189 [Drosophila simulans]
gi|194191096|gb|EDX04672.1| GD22189 [Drosophila simulans]
Length = 227
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 111/208 (53%), Gaps = 68/208 (32%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
M+LWVDKYRP L KLDFH QA +LRNL K+ DFPHL+F Y
Sbjct: 1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
Query: 42 G-----------------------------------PSGAG--KKTRIMALLK------- 57
G PS AG +T ++ L+K
Sbjct: 61 GSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQ 120
Query: 58 -ELYG----PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
E+ G VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL
Sbjct: 121 IEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIP 140
IR+ AP EIVS+L N CK+EGL +P
Sbjct: 181 GIRVAAPNETEIVSILQNTCKREGLALP 208
>gi|367015340|ref|XP_003682169.1| hypothetical protein TDEL_0F01470 [Torulaspora delbrueckii]
gi|359749831|emb|CCE92958.1| hypothetical protein TDEL_0F01470 [Torulaspora delbrueckii]
Length = 354
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 127/212 (59%), Gaps = 3/212 (1%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+++NE D LTR+AQ ALRRTMEKY RLI+ +SMS +I I+SRCL +R PAPT +E
Sbjct: 138 VVINEADSLTRDAQAALRRTMEKYSRNIRLIMVCDSMSSIISPIKSRCLMVRCPAPTDQE 197
Query: 124 IVSVLTNICKKEGLTI-PPEFALRLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEP 181
+ +L + E + + PE ++A S+ NLR A+L E + + +++ ++ P
Sbjct: 198 TIKILNEVVTAENVKLESPEVLEKIATTSNGNLRTALLTLETMALNNEMNLRLNTPVIRP 257
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD-LK 240
DW+ I A I E+S L+E R LY+LL H I ++ + L L+ N + D +K
Sbjct: 258 DWESVILKMANKIQKERSVGCLIECRAILYDLLAHCISARIILQELTFALMKNNNGDKVK 317
Query: 241 SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ IE +++F+ R+ G+K I+H+E ++A M
Sbjct: 318 IQIIESSSVFDERLSLGNKAIYHLEGFIAKVM 349
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +LQ L + N L++L + D PHLL YGP+G+GKKTR M+LL +
Sbjct: 1 MSLWVDKYRPKSLQTLSHNDDLTNLLQSLSHQPRDLPHLLLYGPNGSGKKTRCMSLLASI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|50286125|ref|XP_445491.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524796|emb|CAG58402.1| unnamed protein product [Candida glabrata]
Length = 355
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 144/260 (55%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G R++ LLKE+ +I+NE + LTR+A
Sbjct: 91 PYHLEITPSDMGNNDRVVIQELLKEVAQMEQVDFQDGSSGIANRFKCVIINEANSLTRDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I IRSRCL IR PAP ++I L ++ +E
Sbjct: 151 QAALRRTMEKYSKNIRLIMLCDSMSSIISPIRSRCLMIRSPAPQMKDITKTLKDVASEEN 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEA-SKVQQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ I + L ++A +S+ N+R A+LM E+ S + + + +++PDW + I A I
Sbjct: 211 VNIVDQVILDKVANESNGNMRLALLMLESMSLSNEMQLKENTPVIKPDWMVVILKLANKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEH 252
E+S L+E R LY+LL H IP V+ + L L+++ + S+ I+ A++F+
Sbjct: 271 KKERSVSSLVECRAVLYDLLAHCIPAKVILQELAFALISDKTTPDSSRVEIIDHASVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLCLGNKAIFHLEGFIAKVM 350
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNL-LKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDK+RP L+ L ++ L +L + D PHLL YGP+G+GKKTR MALL+ +
Sbjct: 1 MSLWVDKHRPKTLKTLSYNDDLTRFLSSLAMNPRDLPHLLIYGPNGSGKKTRCMALLESI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|45187570|ref|NP_983793.1| ADL303Cp [Ashbya gossypii ATCC 10895]
gi|44982308|gb|AAS51617.1| ADL303Cp [Ashbya gossypii ATCC 10895]
gi|374107005|gb|AEY95913.1| FADL303Cp [Ashbya gossypii FDAG1]
Length = 355
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 128/211 (60%), Gaps = 2/211 (0%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+I+NE + LTR+AQ ALRRTMEKY R+I+ +S+S +I I+SRC+ +R+PAP E
Sbjct: 138 VIINEAESLTRDAQAALRRTMEKYSRNIRVIMLCDSLSSIIAPIKSRCMLVRVPAPAPAE 197
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQID-QQIVEPD 182
+V+++ +C +EG+T +A+ +D NLR A+L E+ +Q D V PD
Sbjct: 198 MVAIMERVCTQEGVTASEHKLYEIAEFADGNLRLALLTLESMCIQHNLKLTDTSTTVTPD 257
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD-LKS 241
W + + A ++ E++ L+E R LY+LL H IP +++ L LL SD +K
Sbjct: 258 WMLVVCRLANKVLKERTVGSLVECRGILYDLLSHCIPPDIILHELAFALLKMVSSDPVKL 317
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
I++A++F+ R+ G+K I+H+E ++A M
Sbjct: 318 AVIDLASVFDERLALGNKAIYHLEGFLAKVM 348
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDK+RP +L L L L D PH+L YGP+G+GKKTR M LL +
Sbjct: 1 MSLWVDKHRPKSLTSLSHTASLTKQLEALAGSAKDLPHILLYGPNGSGKKTRCMGLLASI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|217071788|gb|ACJ84254.1| unknown [Medicago truncatula]
Length = 262
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 104/162 (64%), Gaps = 14/162 (8%)
Query: 43 PSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALRRTMEKYI 88
PS AG + R + ++KE+ V++LN+ D L+REAQ +LRRTMEKY
Sbjct: 99 PSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYS 158
Query: 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148
CRL+LC NS S+V AIRSRCL +RI AP+ E+IV VL I KKEGL +P A R+A
Sbjct: 159 AYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIA 218
Query: 149 QQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDT 190
++S+RNLRRAIL E +VQQYPF Q I DW+ YI +
Sbjct: 219 EKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEN 260
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 44/60 (73%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDKYRP L H A +L+ L+ E D PHLLFYGPSGAGKKT IMALL++++GP
Sbjct: 2 LWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGP 61
>gi|255715673|ref|XP_002554118.1| KLTH0E14696p [Lachancea thermotolerans]
gi|238935500|emb|CAR23681.1| KLTH0E14696p [Lachancea thermotolerans CBS 6340]
Length = 384
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 123/212 (58%), Gaps = 3/212 (1%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+I+NE D LTR+AQ ALRRTMEKY R I+ SMS +I I+SRCL +R PAPT +E
Sbjct: 168 VIINEADSLTRDAQAALRRTMEKYSRNIRFIMLCESMSSMIAPIKSRCLLVRTPAPTTQE 227
Query: 124 IVSVLTNICKKEGLTIPPEFALR-LAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEP 181
L + +E +T+ E L +A+ D NLR+A+L E+ + + + ++
Sbjct: 228 TADALVKVGGQEKVTVEDEAILNTIAESCDGNLRKALLTFESMALNNEMCLKSSTALIRA 287
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD-LK 240
DW + I A I+ ++S L+E R LY+LL H IP V+ + L LL +D K
Sbjct: 288 DWVVVILKMANRILKDRSVSSLVECRATLYDLLAHCIPAKVIIQELAFALLDAIHNDNHK 347
Query: 241 SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
++ A++F+ R+ G+KPI+H+E ++A M
Sbjct: 348 IAVVQWASVFDERLRLGNKPIYHLEGFIARVM 379
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + L++L E D PHLLFYGP+GAGKKTR MALL+ +
Sbjct: 27 MSLWVDKYRPKSLDALTHTPRLTHLLKSLSVEPRDLPHLLFYGPNGAGKKTRCMALLQSI 86
Query: 60 YGPVI 64
+G +
Sbjct: 87 FGSGV 91
>gi|126644224|ref|XP_001388231.1| replication factor C subunit 5 [Cryptosporidium parvum Iowa II]
gi|126117304|gb|EAZ51404.1| replication factor C subunit 5, putative [Cryptosporidium parvum
Iowa II]
Length = 345
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 121/215 (56%), Gaps = 5/215 (2%)
Query: 61 GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
GP V + E D L+ +AQ LRRTMEKY RLIL +S +IP +RSRCLCIR+P
Sbjct: 126 GPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSRCLCIRVP 185
Query: 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
P+ EE++ VL I E L +P + ++ +S+ NLRRAIL+ E + Q F
Sbjct: 186 LPSPEEVLQVLRFISNSENLQVPNNYLEQIVTESECNLRRAILILETAHTQS--FSNPPS 243
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
++ W+ D A I+ PK LL+VR LY+LL IP +++ L + LL+ +
Sbjct: 244 ALKLPWQKVCIDIATSIVKNPHPKTLLDVREPLYDLLCSCIPADLILVTLTKQLLSIVSA 303
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ I AA + H + GSK I+HIEA++A M
Sbjct: 304 SAQPIIINAAAHYAHTLKLGSKDIWHIEAFLAQVM 338
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 10/83 (12%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE------GDFPHLLFYGPSGAGKKTRIMALL 56
LW+DKY+P L+ D C + L +LL++ G+ PHLLFYGPSG GKK RI ++L
Sbjct: 2 LWIDKYQPRYLR--DLKCNK--ELNSLLEKITSNSNGNIPHLLFYGPSGGGKKVRISSVL 57
Query: 57 KELYGPVIILNETDHLTREAQQA 79
E++G + + D + E +
Sbjct: 58 HEIFGDSVDKVKADMIKPEGTNS 80
>gi|254567163|ref|XP_002490692.1| Replication factor C [Komagataella pastoris GS115]
gi|238030488|emb|CAY68412.1| Replication factor C [Komagataella pastoris GS115]
gi|328351077|emb|CCA37477.1| Replication factor C subunit 5 [Komagataella pastoris CBS 7435]
Length = 369
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 129/229 (56%), Gaps = 17/229 (7%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+I+NE + LTR+AQ ALRRTMEKY RL+L NS+S +I I+SR L IR+ APT E
Sbjct: 135 VVIINEAELLTRDAQAALRRTMEKYSANIRLVLVCNSISSIIEPIKSRTLLIRVAAPTDE 194
Query: 123 EIVSVLTNICKKE---GLTIPPEFALR------LAQQSDRNLRRAILMCEASKVQQYPFQ 173
E+ SV + + + + P + R +A+ +D NLR +L+ EA
Sbjct: 195 EMGSVFEKVLRDQPEVAKSFPADETERQQIYSKIAKVTDHNLRTGLLLLEALYSYNPSIT 254
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL-- 231
++ PDW+ I+ A I++E++ KL + RT LYEL+ HSIP ++ K L
Sbjct: 255 TKTPMIMPDWENVIKKLAIGIVTERTVSKLQQSRTDLYELISHSIPAKLILKKLTIEFWR 314
Query: 232 LANCDSDLKSKS------IEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L + DS +K K ++ A++F+ R+ GSK IFH+E ++ M +
Sbjct: 315 LVDEDSKIKDKDTVKMDIVQQASIFDERLSLGSKDIFHLEGFITKVMVV 363
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLW DKYRP L LD+H K +N L +L GDFPHLLF+GPSGAGKKTRI+A L+++Y
Sbjct: 1 MSLWADKYRPKTLDDLDYHGKISNMLSSLATSGDFPHLLFHGPSGAGKKTRILATLRQIY 60
Query: 61 GPVI 64
GP I
Sbjct: 61 GPNI 64
>gi|403221417|dbj|BAM39550.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 351
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 61 GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
GP V +L + D LT+EAQ ALRRTME + R+ L +S+++P +RSRCLC+R+
Sbjct: 125 GPSYRVFLLEDADTLTQEAQAALRRTMETCVKNARMFLHVRQLSRIMPPLRSRCLCVRVR 184
Query: 118 APTHEEIVSVLTNICKKEGLTIPPEFA----LRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
+ T+ EIV +L IC E +T P + + + +A+ S+RNLRR+IL EA V F
Sbjct: 185 SHTNAEIVDILRGICNAEDIT-PSQASDSMLMNIAESSNRNLRRSILTLEA--VAMGGFT 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
++ + W+ I + ++S Q+P L VR+++Y+LLV IP +++ + ++ LL
Sbjct: 242 LETKNFMMPWEKNINQIVQSVLSNQTPSTLSAVRSQIYDLLVCCIPGDIILETMVNLLLR 301
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L + +AA F H + GSK I+HIEA++A M++
Sbjct: 302 RIKPSLVPLVVHLAAHFSHTMKMGSKDIWHIEAFLAQTMSL 342
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 8/76 (10%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLK 57
LW+DK+ P NL H K N L LLK G+ PH LFYGPSG+GKK+R++A L+
Sbjct: 2 LWIDKHCPRNLSDFSSH-KDVNEL--LLKLVSKSHGELPHFLFYGPSGSGKKSRMLATLR 58
Query: 58 ELYGPVIILNETDHLT 73
+++G + +TD LT
Sbjct: 59 DVFGTRVDKIKTDVLT 74
>gi|428673452|gb|EKX74365.1| replication factor C subunit 5, putative [Babesia equi]
Length = 351
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 8/220 (3%)
Query: 61 GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
GP V + + D L+ EAQ ALRRTME YI R+ L +S+++P +RSRCLCIRI
Sbjct: 125 GPSYRVFLFEDADSLSHEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLRSRCLCIRIR 184
Query: 118 APTHEEIVSVLTNICKKEGLT---IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
+ T +EI+ +L IC E +T L +A+ S+RNLRR+ILM EA V F +
Sbjct: 185 SHTPQEILDILREICNAENITPGQASDSMLLNIAESSNRNLRRSILMLEA--VAMGGFTL 242
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
+ + W+ I+ +S Q+P L +R ++YELLV IP ++ + ++ L+
Sbjct: 243 ETKNFMMPWERNIKQIVDSALSSQTPSTLSSLRPQIYELLVCCIPGEIILETIVNQLIKR 302
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L I +AA F H + GSK I+HIEA++A M++
Sbjct: 303 VKPVLVPNIIHLAAHFSHTMKLGSKDIWHIEAFIAQTMSL 342
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 8/76 (10%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLK 57
LW+DK+ P +L +L H K N L L+K G+ PH LFYGPSGAGKKTRI+A L+
Sbjct: 2 LWIDKHCPKHLHELTSH-KDVNEL--LIKLVNKSHGELPHFLFYGPSGAGKKTRILATLR 58
Query: 58 ELYGPVIILNETDHLT 73
++G + +TD L+
Sbjct: 59 SVFGAKVDKVKTDVLS 74
>gi|294938321|ref|XP_002782103.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239893514|gb|EER13898.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 361
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 156/340 (45%), Gaps = 66/340 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYG------------------ 42
M+ +D RP L +L +H LR L + D PHLLFYG
Sbjct: 12 MAFLIDSERPTTLDELTYHDSITQQLRGLARRPDLPHLLFYGPTGGGKMTRIQCLLREIF 71
Query: 43 ------------------------------PSGAGKK--TRIMALLKELY-GP------- 62
P+ AG + I L+KE+ P
Sbjct: 72 GPAVTKVVVVVAEEQSGGRVLYSNYHLEVTPTEAGTRDVVVIQHLIKEMAQAPPLGGDVP 131
Query: 63 --VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPT 120
V+++N+ +L+R AQ LRRTMEKY+ ++ A+S++ +IP +RSRC+ IR+P PT
Sbjct: 132 FRVVVVNDAHNLSRSAQAGLRRTMEKYVGVLKVFFHADSLASLIPPLRSRCMSIRVPRPT 191
Query: 121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
E + L + K G+ + P A +A +S +LR ++ +A Q +
Sbjct: 192 TEVVKVELERVEAKMGVEMNPHLATIIATESRGDLRYGLMQLDAISAQNGGSHALRNANT 251
Query: 181 P----DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYL-LEGLLAN 234
P WK+ + D + I++EQ+PK+L +R +LY LL VH P + + L L G
Sbjct: 252 PLARLPWKVVVEDIVEDILTEQTPKQLKAIREKLYGLLEVHIPPSEICYHMLVLLGTTLE 311
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
D + +AA FE R ++G K IF++EA +A+ M M
Sbjct: 312 NAEDSWPRLAALAARFEPRPNRGYKQIFNLEALIANIMTM 351
>gi|170058101|ref|XP_001864776.1| replication factor C subunit 3 [Culex quinquefasciatus]
gi|167877317|gb|EDS40700.1| replication factor C subunit 3 [Culex quinquefasciatus]
Length = 223
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 98/165 (59%), Gaps = 28/165 (16%)
Query: 44 SGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98
S AG RI L+ G I+L+E D LT++AQ LRRTMEKY+ TCR LC N
Sbjct: 14 SDAGIHDRITQTLQVDPGGQREFKTIVLSEVDQLTKDAQHVLRRTMEKYVATCRF-LCVN 72
Query: 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA 158
S S+VIPA +ICKKEG+ IPPE A R+ Q+SD NLRRA
Sbjct: 73 STSRVIPA----------------------NSICKKEGIDIPPELATRITQKSDYNLRRA 110
Query: 159 ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL 203
ILM EA KVQQYPF + Q + E DW+++ R A I+ EQSP+KL
Sbjct: 111 ILMLEACKVQQYPFTVGQDLPEIDWQVFFRKMANQIVQEQSPQKL 155
>gi|410082151|ref|XP_003958654.1| hypothetical protein KAFR_0H01090 [Kazachstania africana CBS 2517]
gi|372465243|emb|CCF59519.1| hypothetical protein KAFR_0H01090 [Kazachstania africana CBS 2517]
Length = 360
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 143/263 (54%), Gaps = 26/263 (9%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ + PS G RI+ LLKE+ +I+NE + L+R+A
Sbjct: 91 PYHIEITPSDMGNNDRIVIQELLKEIAQMEQVDFENSKEGLAHRYKCVIINEANSLSRDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP ++E+VS+L+ I +E
Sbjct: 151 QAALRRTMEKYSKNIRLIMLCDSMSSIIAPIKSRCLLIRCPAPANDELVSILSRIVTEEN 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + L +A++++ NLR A LM E+ + + + I++PDW + + A I
Sbjct: 211 VQLESGVILNNIAKEANGNLRVATLMLESMALSNEMQLKTSTTIIKPDWIVVVTSMANKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS-----KSIEMAAM 249
E++ L+E R LY+LL H IP + + L L+ + + + K I++A+
Sbjct: 271 QRERTVGCLVECRAVLYDLLSHCIPAKTILQELTFALVNSPIPGIITQNKMIKIIDLAST 330
Query: 250 FEHRIHKGSKPIFHIEAYVASFM 272
F+ R+ G+K IFH+E ++A M
Sbjct: 331 FDERLSLGNKAIFHLEGFIAKCM 353
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG--DFPHLLFYGPSGAGKKTRIMALLKE 58
MSLWVDKYRP +L+ L H L L E D PHLL YGP+G+GKKTR MALL+
Sbjct: 1 MSLWVDKYRPKSLKTLS-HSSDLTELLTSLSEHPRDLPHLLLYGPNGSGKKTRCMALLES 59
Query: 59 LYGPVI 64
++GP +
Sbjct: 60 IFGPGV 65
>gi|323338653|gb|EGA79869.1| Rfc5p [Saccharomyces cerevisiae Vin13]
Length = 356
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 135/247 (54%), Gaps = 23/247 (9%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTXKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP N++ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSK 259
R+ G +
Sbjct: 331 RLSLGKQ 337
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>gi|444315932|ref|XP_004178623.1| hypothetical protein TBLA_0B02620 [Tetrapisispora blattae CBS 6284]
gi|387511663|emb|CCH59104.1| hypothetical protein TBLA_0B02620 [Tetrapisispora blattae CBS 6284]
Length = 366
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+I+NE D L+R+AQ ALRRTMEKY RLI+ +NS+S +I I+SRCL IR P+P+ EE
Sbjct: 145 VIINEADCLSRDAQAALRRTMEKYSRNIRLIMISNSLSPIISPIKSRCLLIRCPSPSDEE 204
Query: 124 IVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEP 181
+++L I E + + + L ++ ++S+ N+R ++LM E+ + ++ + I++P
Sbjct: 205 HLALLKKIVDAENVNVESDDILKKIVKESNNNIRTSVLMLESMALSNEFNLKSTSPIIKP 264
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
DW I + I ++S ++E R+ +Y+LL H IP ++ + L LL N ++ +K
Sbjct: 265 DWLNTIIKLSMKIKKDRSVPCIVECRSIIYDLLAHCIPPKIILQELTFQLLKNYNNSIKV 324
Query: 242 KS------IEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ +++ F+ R+ G+KPIFH+E ++A M
Sbjct: 325 TDENILDIMSISSTFDERLALGNKPIFHLEGFIAKVM 361
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLK-EGDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L +L + L++L D PHLL YGP+G GKKTR M+LL+ +
Sbjct: 1 MSLWVDKYRPKSLNELSHNDDLTTLLQSLSSYHKDLPHLLLYGPNGVGKKTRCMSLLQSI 60
Query: 60 YG 61
+G
Sbjct: 61 FG 62
>gi|385302248|gb|EIF46388.1| activator 1 40 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 382
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 24/258 (9%)
Query: 34 DFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRL 93
DF LL G+ T++++ K+ + V+I+NE + L+R+AQ ALRRTMEK+ RL
Sbjct: 122 DFAGLL------KGEDTKVISNNKKRF-KVVIINEAEQLSRDAQAALRRTMEKFSANIRL 174
Query: 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---IPPEFALR---- 146
+L S S +I I+SR L IR+ P+ +E VL I E + P + + R
Sbjct: 175 VLICTSTSNIIDPIKSRTLAIRVGLPSIDECGQVLETILSHESMARKEFPSDQSERYEIY 234
Query: 147 --LAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
+A ++NLR I+M EA + ++ PDW++ I + A+ I+ ++S KL
Sbjct: 235 RHIADACNQNLRMGIMMLEALYMNNDKVTPTTXVIRPDWQLVIEELARGILKDRSVSKLQ 294
Query: 205 EVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS--------DLKSKSIEMAAMFEHRIHK 256
+ R+ LYELL H+IP +++ K L L + D+ K++ + A++F+ R+
Sbjct: 295 QTRSVLYELLAHAIPASLILKGLTLELWRDIDAFAGIKBRDQTKAEVVXAASVFDERLSL 354
Query: 257 GSKPIFHIEAYVASFMAM 274
GSK IFH+E +V M +
Sbjct: 355 GSKDIFHLEGFVTRVMVV 372
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLW DKYRP L +L +H + L+ L K GDFPH+L YGPSGAGKKTR M+LL ELY
Sbjct: 1 MSLWADKYRPKTLGQLTYHPDISKKLKLLAKSGDFPHILMYGPSGAGKKTRCMSLLHELY 60
Query: 61 GPVI 64
G +
Sbjct: 61 GSGV 64
>gi|13242657|ref|NP_077672.1| EsV-1-187 [Ectocarpus siliculosus virus 1]
gi|13177457|gb|AAK14601.1|AF204951_186 EsV-1-187 [Ectocarpus siliculosus virus 1]
Length = 324
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 124/216 (57%), Gaps = 23/216 (10%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
I+L +L+++AQ LRRTMEK+ +CRL+L + S+VI +RSRC+ IR+P P+ E
Sbjct: 119 IVLRGAGNLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLPSAEN 178
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
+ + + I K ++ Q S R++ RA+ M +A D+ + W
Sbjct: 179 LAAAI-EIDDK-------ALVSQIVQSSGRSISRAMFMAKAGSA-------DKML----W 219
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN----CDSDL 239
Y+ + EQSP+KL++ R L ELLV +P +++ K L+ GL+++ + +
Sbjct: 220 VKYVESMCTGVFLEQSPRKLIDARDSLNELLVAGVPASIILKTLMHGLISHKNLKGEGGV 279
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
K + + AA++EHRI GSK I H+EA+VASFM +Y
Sbjct: 280 KREIVRWAAVYEHRICVGSKDILHLEAFVASFMDLY 315
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
H + + L ++ + GD PHLLF+GP G+GK T + LLK+LYGP +
Sbjct: 1 MHPEIEDRLTSMSRHGDIPHLLFHGPRGSGKMTLVRHLLKKLYGPGV 47
>gi|255561098|ref|XP_002521561.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223539239|gb|EEF40832.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 779
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 156/336 (46%), Gaps = 64/336 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGK-------------- 48
W DK++P++L H ++A L+ L+ + PH+L GPSG+GK
Sbjct: 432 FWADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLCEIFGG 491
Query: 49 --------------------------------KTRIMALLKEL--------------YGP 62
K +M+L++E+ + P
Sbjct: 492 ACRNEERAMQVAVPIASSAHHLELNVNLEPNAKHALMSLVREISNNYALAPEVSNATFKP 551
Query: 63 ---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
V++L + D + Q ++ M+ Y C+LILC + ++ + +RC I++ +P
Sbjct: 552 DYKVLVLYQVDKAAEDIQHLIKWIMDCYTDACKLILCCEDDADILEPVTNRCRVIKVDSP 611
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
EI+ VL I +KE +P FA R+A +S ++LR+AI+ EA K YPF DQ I
Sbjct: 612 VTHEIMEVLIQIARKEEFELPMNFAARIAAKSKQHLRKAIMTLEACKEHNYPFADDQPIP 671
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL 239
W+ + + A I+S+ SPK+L VR + +LL+ + ++ L+E L D+
Sbjct: 672 S-SWEEVLIELAAEILSDPSPKRLFMVRGKFQKLLLDFVHPKLILLKLVEQFLKGVDASS 730
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
K + A +E RI GS + +E +VA FM+++
Sbjct: 731 KRELYYWHAYYEKRIPTGSSALLKLEEFVAKFMSLH 766
>gi|298713109|emb|CBJ33469.1| Viral replication factor C subunit [Ectocarpus siliculosus]
Length = 324
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 126/216 (58%), Gaps = 23/216 (10%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
I+L + +L+++AQ LRRTMEK+ +CRL+L + S+VI +RSRC+ IR+P P+ E
Sbjct: 119 IVLRGSGNLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLPSAEN 178
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
+ + + I K ++ + S R++ RAI M +A D+ + W
Sbjct: 179 LAAAI-EIDDK-------ALVSQIVESSGRSISRAIFMAKAGSA-------DKMV----W 219
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----NCDSDL 239
Y K + EQSP+KL++VR L ELLV +P +++ K L+ GL++ + + +
Sbjct: 220 VKYTESICKGVFLEQSPRKLIDVRDSLNELLVAGVPASIILKPLMHGLISHPILDGEDGV 279
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
K + ++ AA++EHRI GSK H+EAY+ASFM +Y
Sbjct: 280 KREIVKRAAVYEHRICIGSKYNLHLEAYIASFMDLY 315
>gi|299472909|emb|CBN80478.1| RFC small subunit [Ectocarpus siliculosus]
Length = 324
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 125/217 (57%), Gaps = 25/217 (11%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
I+L +L+++AQ LRRTMEK+ +CRL+L + S+VI +RSRC+ IR+P P+ E
Sbjct: 119 IVLRGAGNLSKQAQAGLRRTMEKFTASCRLVLVSAFASRVIEPLRSRCVLIRVPLPSAEN 178
Query: 124 IVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+ + + I E ++ + S R++ RA+ M +A D+ +
Sbjct: 179 LAA---------AIEIDDETLVSQIVESSGRSISRAMFMAKAGSA-------DKML---- 218
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN----CDSD 238
W Y+ + EQSP+KL++VR L ELLV +P +++ K L+ GL+++ +
Sbjct: 219 WVKYVESICTGVFLEQSPRKLIDVRDSLNELLVAGVPASIILKTLMHGLISHKSLRGEGG 278
Query: 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+K + + AA++EHRI GSK I H+EA+VASFM +Y
Sbjct: 279 VKREIVRWAAVYEHRICVGSKDILHLEAFVASFMDLY 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
H + + L + + GD PHLLF+GP G+GK T + LL++LYGP +
Sbjct: 1 MHPEIEDRLTCMSRHGDIPHLLFHGPRGSGKMTLVRHLLEKLYGPGV 47
>gi|320584115|gb|EFW98326.1| Replication factor C [Ogataea parapolymorpha DL-1]
Length = 381
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 16/228 (7%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+I+NE + LTR+AQ ALRRTMEKY RLIL NS S +I I+SR L IRI +PT
Sbjct: 147 VVIINEAELLTRDAQAALRRTMEKYSANIRLILICNSTSNIIDPIKSRTLPIRIASPTTS 206
Query: 123 EIVSVLTNICKKE---GLTIPPE------FALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
VL I +KE P + R++ S+RNLR +I+M EA +
Sbjct: 207 ACAGVLGMILRKEHHAKKAFPDDDEQRNIIFKRISDASERNLRMSIMMMEAMYMNHDTVS 266
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
I I++PDW + + I ++S +L + R+ LYELL H+IP +L K L +
Sbjct: 267 ITTPIIKPDWADVLHELVTGICKDRSVSRLQQARSILYELLAHAIPAKLLLKKLTMTIWD 326
Query: 234 NCDS-DLKSKS------IEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
+ D+K+KS I +++++ R+ GSK IFH+E ++ M +
Sbjct: 327 FTGTLDIKNKSEVRKAVISASSIYDERLSLGSKDIFHLEGFITKVMVI 374
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLW DKYRP L +LDFH K + L+ + G+FPHLL YGP GAGKKTR++A L+E+Y
Sbjct: 1 MSLWADKYRPRTLSELDFHPKISRQLQVMASSGEFPHLLVYGPPGAGKKTRVLATLREIY 60
Query: 61 G 61
G
Sbjct: 61 G 61
>gi|413932846|gb|AFW67397.1| hypothetical protein ZEAMMB73_776055 [Zea mays]
Length = 182
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 14/148 (9%)
Query: 36 PHLLFYGPSGAGKKTR--IMALLKELYG------------PVIILNETDHLTREAQQALR 81
H + PS AG + R + ++KE+ V++LNE D L+REAQ +LR
Sbjct: 35 AHHVEMNPSDAGFQDRYVVQEIIKEMAKNRPIDAKGRRAFKVLVLNEVDKLSREAQHSLR 94
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTMEKY ++CRLILC NS S+V A+RSRCL +R+ AP+ ++IV VL I KKE L +P
Sbjct: 95 RTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNAPSEDQIVQVLEFIGKKENLILPA 154
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQ 169
FA R+A QS+RNLRRAIL E KVQQ
Sbjct: 155 GFAARIAAQSNRNLRRAILFFETCKVQQ 182
>gi|84997984|ref|XP_953713.1| replication factor C subunit [Theileria annulata]
gi|65304710|emb|CAI73035.1| replication factor C subunit, putative [Theileria annulata]
Length = 351
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 8/220 (3%)
Query: 61 GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
GP + + D LT+EAQ ALRRTME YI R+ L +S+++P +RSRCLCIR+
Sbjct: 125 GPSYRAFLFEDADTLTQEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLRSRCLCIRVR 184
Query: 118 APTHEEIVSVLTNICKKEGLT---IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
+ T++EIV +L IC E +T + +A+ S RNLRR+IL E + + Q
Sbjct: 185 SHTNDEIVQILRKICNSEDITPSQASDQMLRNIAESSKRNLRRSILTLETIAMGGFTLQT 244
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
++ W+ I + ++S Q+P L VR ++YELLV IP +++ + +++ L+
Sbjct: 245 KNFMMP--WEKNITQVVQSVVSSQTPSTLSAVRPQIYELLVCCIPGDLILENIVDQLVPK 302
Query: 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
L +AA F H + GSK I+HIEA++A M++
Sbjct: 303 VKPSLVPSVFHLAAHFSHTMKLGSKDIWHIEAFLAQIMSL 342
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELY 60
LW+DK+ P NL H + L L+ + G+ PH LFYGPSGAGKK+RI+A L+ ++
Sbjct: 2 LWIDKHCPKNLNDFTSHKDLSELLLKLVNKSHGELPHFLFYGPSGAGKKSRILATLRSVF 61
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105
G + +TD L+ Y T +++C + + IP
Sbjct: 62 GNKVDKIKTDVLS-------------YKDTSEVVVCQSEVHIQIP 93
>gi|323310134|gb|EGA63327.1| Rfc5p [Saccharomyces cerevisiae FostersO]
Length = 317
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 21/218 (9%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
+ E+S L+E R LY+LL H IP N++ K L LL
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL 308
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>gi|195578465|ref|XP_002079086.1| GD22190 [Drosophila simulans]
gi|194191095|gb|EDX04671.1| GD22190 [Drosophila simulans]
Length = 128
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 90/121 (74%)
Query: 161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPV 220
M EA+KV + PF +Q+I + DW++++R+TA IISEQ+P KL ++R RLYELL +P
Sbjct: 1 MLEAAKVAKAPFTANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPP 60
Query: 221 NVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFME 280
N++F+ L+E L+ NCD +K+K++E A +EHR+ G+K IFH+EA+VA FM +Y +F+
Sbjct: 61 NLIFRGLVEQLVNNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLS 120
Query: 281 D 281
+
Sbjct: 121 E 121
>gi|403417566|emb|CCM04266.1| predicted protein [Fibroporia radiculosa]
Length = 237
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 68/236 (28%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDKYRP L +L +H + L L GDFPH+L +
Sbjct: 1 MSLWVDKYRPRTLDQLHYHKSLSVRLNALAASGDFPHMLLYGPSGAGKKTRIAATLHALF 60
Query: 42 GPS-------------------------------------GAGKKTRIMALLKELYGP-- 62
GP G + I LLKE+
Sbjct: 61 GPGAQKLKIDQRVFMTPTRRKLDVNIVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+I+NE D L+R+AQ ALRRTMEKY++ R+ILCANS S++I I+SRCL
Sbjct: 121 IDVSARHPFKVVIINEADSLSRDAQAALRRTMEKYMSNMRIILCANSTSRLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168
+R+ +P+ EE+ VL + +E +P + A + Q ++ N+R+A+L+ EA K+Q
Sbjct: 181 LVRVASPSEEEMSEVLRYVAGREQFDLPDDAAREIVQDANGNMRKALLVLEALKMQ 236
>gi|399217573|emb|CCF74460.1| unnamed protein product [Babesia microti strain RI]
Length = 346
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Query: 61 GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
GP V +L++ D L+ AQ ALRRT+EK+I R+ + +S+++P ++SRCLCIR+
Sbjct: 124 GPTFRVFVLHDADFLSEAAQAALRRTLEKHIRNARVFMHVKELSRIMPPLKSRCLCIRLG 183
Query: 118 APTHEEIVSVLTNICKKEGL-TIPPEFAL--RLAQQSDRNLRRAILMCEASKVQQYPFQI 174
P EE+V+VL NIC E + T + AL R+ SDRNLRR+IL E + F
Sbjct: 184 LPRKEEVVAVLRNICTYENISTSQADNALLERICDASDRNLRRSILTLET--IATNGFVD 241
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
+ W+ I+ A+ I ++Q+ + L +RT++YEL V IP + + + + LL +
Sbjct: 242 PMTSLTLPWERCIKSIAEGIATKQTVQNLAALRTKVYELFVCCIPGSTVLQCIATYLLKH 301
Query: 235 CDS-DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273
+ ++ + + A F H + GS+ I+HIEA++A MA
Sbjct: 302 PKAKNMNAILAHLGAHFSHTMRMGSREIWHIEAFIAQAMA 341
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW+DKY P + LD H + L K D PHL+ YGPSG+GKK RIM LL+E++G
Sbjct: 2 LWIDKYAPRTIAGLDCHREINEVFTQLCKSSDIPHLILYGPSGSGKKARIMVLLREIFGA 61
Query: 63 VIILNETDHLTRE 75
+ DH+ E
Sbjct: 62 -----KADHIKVE 69
>gi|147811404|emb|CAN63339.1| hypothetical protein VITISV_006668 [Vitis vinifera]
Length = 494
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 133/263 (50%), Gaps = 28/263 (10%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W D+Y+P L H +A+ LR L++ G H +F G G GK+T ALL E++G
Sbjct: 168 WADRYQPRTLTDFICHRDKAHMLRCLVRSGQSDHFIFEGAPGVGKRTMARALLGEVFGTH 227
Query: 63 ----------------VIILNETDH---------LTREAQQALRRTMEKYITTCRLILCA 97
V+ N + H L+ Q +R ++ Y ++ C
Sbjct: 228 RLESQCDNTSSNRGIHVLFFNPSSHAIILCGAEKLSEGDQLLIRDHLQTYRGHFKVYFCY 287
Query: 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157
+ S ++ ++S C I+IP P+ EEIV VL I K E + +PP A +A+++ ++R+
Sbjct: 288 SGTS-MLQHLKSLCTVIQIPTPSKEEIVEVLEFIAKHEAIELPPRLAENMAEKAKHSVRQ 346
Query: 158 AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHS 217
AI EA+ YPF+ DQ+ + W+ + AK +I+EQS K+ ++ ++ L+ H+
Sbjct: 347 AIRSFEATWKLNYPFKEDQEPI-TGWEEEFAEIAKKVIAEQSAKQWYNIKEKIKNLIAHN 405
Query: 218 IPVNVLFKYLLEGLLANCDSDLK 240
+P ++F+ + +L N +LK
Sbjct: 406 VPSEIIFQVSMLAVLQNLVGELK 428
>gi|387593545|gb|EIJ88569.1| hypothetical protein NEQG_01259 [Nematocida parisii ERTm3]
gi|387597199|gb|EIJ94819.1| hypothetical protein NEPG_00343 [Nematocida parisii ERTm1]
Length = 356
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 15/269 (5%)
Query: 8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILN 67
Y LQK+ ++NL+K + H G ++ K L+ P
Sbjct: 98 YDKKILQKIATDISATKSIKNLMK--SYEHAQNQNEDGNTHSGTKVSHPKILFIP----- 150
Query: 68 ETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV 127
+ L+ AQ ALRR +EK +L+L N++S +IPA +SR L R+PAP+ ++I V
Sbjct: 151 DGHLLSTGAQMALRRVLEKGACNFQLVLLTNTLSHLIPAFKSRFLICRVPAPSDQDISGV 210
Query: 128 LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYI 187
+++I +E ++IP + + +S+RN+R+A + E + V + P + W + I
Sbjct: 211 ISHISTEENISIPEKTKQEIINRSNRNMRKAFSLLELA-VHKQPLAV------APWDVII 263
Query: 188 RDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSI-EM 246
+ + + S S K L+E R ++Y+LL + +P +F+ +LEGLL +KSI E+
Sbjct: 264 IEIIRSVESTPSVKALVETREKIYKLLNNQVPSTYIFETILEGLLQREKRVEVAKSITEI 323
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
A+ + R+ G+K +FHIEA++A+ M++Y
Sbjct: 324 ASKYTARLCAGTKDMFHIEAFIANAMSLY 352
>gi|222623516|gb|EEE57648.1| hypothetical protein OsJ_08080 [Oryza sativa Japonica Group]
Length = 691
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 41/310 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNL---------------------LKEGDFPHL--- 38
W DKYRP L H +Q L+ L L D H+
Sbjct: 374 FWADKYRPRTLGGFTCHREQIEQLKQLVSHYLKSCSGQGSTSMPVLVPLSSSDH-HMELN 432
Query: 39 LFYGPSGAG-------------KKTRIMALLKELYGPVIILNETDHLTREAQQALRRTME 85
L Y AG KKT ++ K+ VI+L + D ++ Q+ ++ ++
Sbjct: 433 LRYYSKNAGYVLMDLANEITNKKKTTDPSVRKKFK--VIVLYDVDKVSESNQRLIKWMID 490
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
T ++++ S ++ +++SRC I I P EIV +LT I KKE +P FA
Sbjct: 491 SSSDTHKILMTCQDESHILDSMKSRCKLICIGVPNTREIVDILTYISKKESFDLPSSFAA 550
Query: 146 RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLE 205
+A QS +N+R AIL EA K YPF ID Q + W+ +++ A I+ + SPK+L
Sbjct: 551 TIASQSRQNMREAILALEACKANNYPF-IDGQAIPLGWENVLQEIAAEILDDPSPKRLFL 609
Query: 206 VRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIE 265
VR +L +LLV +P ++ + L E L S +K + A ++ R+ G+ + +E
Sbjct: 610 VRGKLQKLLVEFVPPKLILQKLAELFLKGIQSSIKREVYYWHAYYDKRLPVGASALLKLE 669
Query: 266 AYVASFMAMY 275
+VA FM+++
Sbjct: 670 EFVAKFMSIH 679
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 142/314 (45%), Gaps = 47/314 (14%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP+ + + + ++ LK G+ PH+LFYGP G GK T +A+ +ELYG
Sbjct: 7 IWVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D++T +AQQALRR
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKAPYKLVILDEADNMTSDAQQALRRM 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y R IL AN +S++I I+SRC R + ++ L I KEG+ + E
Sbjct: 127 MEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGVKVTNEA 186
Query: 144 ALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIV---EPDWKIYIRDTAKLIISEQ 198
+ S ++R+AI L A+ ++ ++ + V EP I D + S
Sbjct: 187 LEAIWDVSQGDMRKAINTLQAAAATAKEITPEVIYKTVGYIEPK---DIVDLVNTVFSGD 243
Query: 199 SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
K ++RT +YE V + + + G N + K + E AA ++R+ +GS
Sbjct: 244 FVKARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYRLTEGS 303
Query: 259 KPIFHIEAYVASFM 272
+ A++A M
Sbjct: 304 DEEIQLSAFLAKLM 317
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 53/317 (16%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP+ + + + ++ LLK G+ PH+LFYGP G GK T +A+ +ELYG
Sbjct: 7 IWVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D++T +AQQALRR
Sbjct: 67 AWRENVLELNASDERGITTIRERVKEFARTAPMGKAPYKLIILDEADNMTSDAQQALRRM 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y R IL AN +S++I I+SRC R + ++ L +I +EG+ + E
Sbjct: 127 MEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGVKVTDEA 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV-------EPDWKIYIRDTAKLIIS 196
+ S ++R+AI +A+ +I ++V EP I D + ++
Sbjct: 187 LEAIWDISQGDMRKAINTLQAATATAR--EITPEVVYKTVGYIEPK---DIVDLVNIALN 241
Query: 197 EQSPKKLLEVRTRLYELLVHSIPV-NVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIH 255
+ ++RT +YE V + V+ + ++ G + N + K + E AA ++R+
Sbjct: 242 GDFIRARDKLRTLMYEHGVSGTEILRVIQRQIMSGAI-NVPDEAKVEIAETAADIDYRLT 300
Query: 256 KGSKPIFHIEAYVASFM 272
+GS + A++A M
Sbjct: 301 EGSDEEIQLSAFLARLM 317
>gi|218191427|gb|EEC73854.1| hypothetical protein OsI_08618 [Oryza sativa Indica Group]
Length = 729
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 125/228 (54%), Gaps = 3/228 (1%)
Query: 48 KKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI 107
KKT ++ K+ VI+L + D ++ Q+ ++ ++ T ++++ S ++ ++
Sbjct: 493 KKTTDPSVRKKFK--VIVLYDVDKVSESNQRLIKWMIDSSSDTHKILMTCQDESHILDSM 550
Query: 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV 167
+SRC I I P EIV +LT I KKE +P FA +A QS +N+R AIL EA K
Sbjct: 551 KSRCKLICIGVPNTREIVDILTYISKKESFDLPSSFAATIASQSRQNMREAILALEACKA 610
Query: 168 QQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYL 227
YPF ID Q + W+ +++ A I+ + SPK+L VR +L +LLV +P ++ + L
Sbjct: 611 NNYPF-IDGQAIPLGWENVLQEIAAEILDDPSPKRLFLVRGKLQKLLVEFVPPKLILQKL 669
Query: 228 LEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
E L S +K + A ++ R+ G+ + +E +VA FM+++
Sbjct: 670 AELFLKGIQSSIKREVYYWHAYYDKRLPVGASALLKLEEFVAKFMSIH 717
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W DKYRP L H +Q L+ L+ PH++F GP G+GK + A++ E++G
Sbjct: 375 FWADKYRPRTLGGFTCHREQIEQLKQLVSTEFCPHIIFKGPPGSGKSSLCRAVVTEIFG 433
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 55/316 (17%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W +KYRP L+ + H + L + +K G+ PHLLF GP G GK +AL +ELYG
Sbjct: 6 IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGE 65
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 66 TWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFLDEADALTSDAQSALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y TCR I+ N S++I I+SRC R +I + +T I K EGL I +
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185
Query: 144 ALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
L + ++RRAI L A+ + + Q I D KL ++ Q
Sbjct: 186 MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQ--- 242
Query: 202 KLLEVRTRLYELLV-----HSIPVNVLFKYLLE-GLLANCDSDLKSKSIEMAAMFEHRIH 255
++ R +L ELL+ + ++ +++ + E GL D D+ ++ + R+
Sbjct: 243 -FMDSRNKLDELLITYGLSGTDIIDQIYRSMFELGL----DEDVLVALVDRIGEADFRLT 297
Query: 256 KGSKPIFHIEAYVASF 271
+G+ IEA +A F
Sbjct: 298 EGASERIQIEALLAHF 313
>gi|378755131|gb|EHY65158.1| hypothetical protein NERG_01604 [Nematocida sp. 1 ERTm2]
Length = 352
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 125/220 (56%), Gaps = 8/220 (3%)
Query: 57 KELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI 116
K ++ ++++ + L+ AQ ALRR +EK +L+L ++S +IPA +SR L R+
Sbjct: 138 KAMHPKILLIPDGHLLSTGAQMALRRILEKGAANFQLVLLTTTLSHIIPAFKSRFLVCRV 197
Query: 117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ 176
PAP+ +I S+++ I +E + I + + S RN+R A+ + E + V + P I
Sbjct: 198 PAPSRNDIASLVSRISAQEKVDISEDTCTEIVDMSGRNMRIALSIMELA-VHKEPISI-- 254
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
W + IRD + + S K L+E+R LY LL + +P + + +L+G+L N
Sbjct: 255 ----APWDMTIRDIVRSVQITPSVKCLVEIRALLYSLLCNHLPATYIVESILQGVLKNEK 310
Query: 237 SDLKSKSI-EMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
K++ I E+A+ + R+ G+K +FHIEA+VA+ M++Y
Sbjct: 311 KVEKARKITEIASKYTARLGAGTKDLFHIEAFVANLMSLY 350
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 6 DKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
DKYRP L +D A + + L +++F GP GAGK+T A LK +G
Sbjct: 4 DKYRPETLADMDR--IPAARILSALPFSSISNIIFVGPEGAGKRTLFSAFLKHTFG 57
>gi|413923603|gb|AFW63535.1| hypothetical protein ZEAMMB73_411986 [Zea mays]
Length = 740
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 120/217 (55%), Gaps = 1/217 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VI+L + D +++ Q+ ++ ++ C++I+ S ++ +I+SRC I I P+
Sbjct: 514 VIVLYDVDKVSQNNQRLIKWIIDSSSDACKIIMTCQDESNLLDSIKSRCKIISIGVPSTR 573
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+V +LT +KE +P FA +A QS +NLR AIL EA K YPF ID Q +
Sbjct: 574 EVVDILTYTSRKESFDLPTSFATTIANQSRKNLREAILALEACKANNYPF-IDGQAIPLG 632
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ + + A I+ + +PK+L R +L +LLV +P ++ + L+E L + +K +
Sbjct: 633 WEEVLEELAVEILDDPAPKRLFLARGKLQKLLVEFVPPKLILQKLVELFLKGIQTGVKRE 692
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
A ++ R+ G+ + +E +VA FM+++ + M
Sbjct: 693 VYYWHAYYDKRLPVGASALLKLEEFVAKFMSIHRKSM 729
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W DKYRP NL H +Q L+ + PH++F GP G+GK++ A+L E++G
Sbjct: 383 FWADKYRPQNLNGFTCHREQVQQLKQSVSAEFCPHIIFKGPPGSGKRSLCRAVLTEIFG 441
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 60/319 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP +L ++ + L+ +KE + PHLLF GP G GK T +AL+++LYG
Sbjct: 6 LWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN 65
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
VI+L+E D++T +AQQALRRT
Sbjct: 66 NYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL N +S++I I+SR R E++V+ L I K E + P+
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + ++R+AI + +A+ + VE +K+ IR+ L +S
Sbjct: 186 IETIFDITQGDMRKAINVIQAASA------YGKITVETVYKVLGLAQPKEIREMLHLALS 239
Query: 197 EQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDS---DLKSKSIEMAAMFEH 252
K L+ R +L ELL+ + + + K + + L N S DLK ++ A E
Sbjct: 240 ----GKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEF 295
Query: 253 RIHKGSKPIFHIEAYVASF 271
RI +G+ + A++A
Sbjct: 296 RIMEGADDEIQLSAFLAKL 314
>gi|359476885|ref|XP_003631905.1| PREDICTED: uncharacterized protein LOC100852980 [Vitis vinifera]
Length = 766
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 64/335 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
W DK+RP +L H ++A L+ L+ PH+LF YG
Sbjct: 422 FWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGD 481
Query: 44 SGAGKKT---------------------------RIMALLKELYG--------------- 61
+ +K +MA++K++
Sbjct: 482 ASWNEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIVKQIRSNCEITPEVSNVDFKA 541
Query: 62 --PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
V++L E D Q ++ M+ Y C+LI+C V+ ++++RC I++ AP
Sbjct: 542 DYKVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESVKNRCKVIKLEAP 601
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
EI+ VL I +KE +P FA ++A +S ++LR+AI+ EA K YPF +D Q +
Sbjct: 602 VTHEIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKAHNYPF-LDDQPI 660
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL 239
W+ + + A ++ + SP +L +R ++ +LLV + ++ + L+E L D+
Sbjct: 661 PLGWEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHPKLILQKLVEQFLKGTDASQ 720
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
K A ++ R+ G+ + +E +VA FM++
Sbjct: 721 KRDLYYWHAYYDKRLPAGTSALLKLEEFVAKFMSI 755
>gi|224071367|ref|XP_002303425.1| predicted protein [Populus trichocarpa]
gi|222840857|gb|EEE78404.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 153/336 (45%), Gaps = 66/336 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE----- 58
W +KY+P L+ H ++A +R+ + G + H +F GP G GK+T +A+L+E
Sbjct: 91 WAEKYQPKALKDFICHREKAESIRSTVCRGHYNHCIFEGPPGVGKRTMALAMLRECAGMD 150
Query: 59 --------------------------------------LYGPVIILNETDHLTREAQQAL 80
+ G II+NE + L+++AQ +
Sbjct: 151 ITETKEEIREFDLLIQIDLSEIRWHATEVILDLLQETYINGQAIIVNEAERLSKDAQLRI 210
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
+ ++ Y C++I C +S+ + + C+ I + P+ E+IV VL I KK+ + +P
Sbjct: 211 KSFLQTYRGHCKVIFCCYDISR-LHDLSPLCMVIPLLPPSDEQIVEVLHFIAKKQDIELP 269
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
+ A +A++S R L++AI EA+ YPF+ ++Q+V W+ I D A II EQS
Sbjct: 270 DQLANNIAEKSKRCLQQAIRSFEATWHSNYPFK-EEQLVLTGWEKEIADIATSIIEEQSS 328
Query: 201 KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD---------------SDLKSKSIE 245
K+L R +L LL H++ +F L+E L + D D + IE
Sbjct: 329 KRLFLFRQKLQILLQHNLCPQFVFFTLVEELKRHLDDRIQMQIGVFTQTYNDDNEDLCIE 388
Query: 246 MAAM------FEHRIHKGSKPIFHIEAYVASFMAMY 275
M F ++ IE +VA FM+ Y
Sbjct: 389 RKKMRNQEELFCGQMRTRVAGFVRIEEFVAKFMSFY 424
>gi|297744802|emb|CBI38070.3| unnamed protein product [Vitis vinifera]
Length = 530
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 52/280 (18%)
Query: 4 WVDKYRPNNLQKLDFHCK--QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W DKYRP L DF C +A L++L+K PH +F G +G GKKT I A L+E++G
Sbjct: 233 WADKYRPKALS--DFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVFG 290
Query: 62 ----------------------------------------------PVIILNETDHLTRE 75
I+L E + L+ E
Sbjct: 291 HDRVQTREECKEFYLKGESIRSIRVNVKVSCHHIESQQGCALLNIFTAIVLYEAEKLSTE 350
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
A + ++KY + + S++ P I+S C +++ P+ EEIV VL I K+E
Sbjct: 351 ALLYFKWLLDKYEGHNMVFFSCSDTSKLQP-IKSLCTMVQLLPPSDEEIVEVLELIAKQE 409
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLII 195
+ +P E A ++ S NLR+AI EA+ +YPF+ DQ+I W+ I AK II
Sbjct: 410 SINLPRELAEKIVGNSKNNLRQAIRSFEATWKFKYPFEEDQEI-RTGWEDDIARIAKNII 468
Query: 196 SEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC 235
EQ+PK+L +R +L +L H++ ++K + L C
Sbjct: 469 EEQTPKQLYNIRGKLQKLTEHNVASEFIYKVRVSQPLTPC 508
>gi|224094813|ref|XP_002310247.1| predicted protein [Populus trichocarpa]
gi|222853150|gb|EEE90697.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 32/257 (12%)
Query: 49 KTRIMALLKEL--------------YGP---VIILNETDHLTREAQQALRRTMEKYITTC 91
KT +M L+KE+ + P V++L E D Q ++ M+ Y C
Sbjct: 660 KTALMGLVKEIRNTYAITPDFSNVNFKPDYKVLVLYEVDKAPENIQPLMKWIMDCYTDAC 719
Query: 92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS 151
+LILC S ++ +++RC +++ AP EI+ VL I +KE +P FA ++A +S
Sbjct: 720 KLILCCEDDSDILETVKNRCKVLKVDAPVTHEIMEVLIQIARKEEFDLPMNFAAKIAAKS 779
Query: 152 DRNLRRAILMCEASKVQQYPFQIDQQIVEP-DWKIYIRDTAKLIISEQSPKKLLEVRTRL 210
+NLR+AI+ EA K YPF DQ I P W+ + + A I+ + SP KL R +L
Sbjct: 780 KQNLRKAIMALEACKAHNYPFSDDQPI--PFGWEEVLVELATEILIDPSPNKLFSARGKL 837
Query: 211 YELLVHSI-PVNVLFKY-----------LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
LLV + P +L KY L+E L +++ + + A ++ R+ G+
Sbjct: 838 KRLLVDFVNPKLILLKYTFLIELHLQQKLVEQFLKGVEANSRRELYYWHAYYDKRLPTGT 897
Query: 259 KPIFHIEAYVASFMAMY 275
+ +E +VA FM+MY
Sbjct: 898 TALLKLEEFVAKFMSMY 914
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W DK++P +L H +A L L+ PH+L GPSG+GKK MAL+ +++G
Sbjct: 558 FWADKHQPGSLNGFTCHKHEAQILGQLVSHDSIPHILLKGPSGSGKKALAMALIGDIFG 616
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 61/322 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + + L+ L+ GD PHLLF+GP G GK + I+AL ++LYG
Sbjct: 10 WVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGNE 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +TR+AQ ALRRT
Sbjct: 70 FRQKVLELNASDERGISVIREKVKNFSQMTANQGKIRYRIVILDEADSMTRDAQTALRRT 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTIPPE 142
MEKY T R L N ++++IP + SRC R P PT + +V+ L IC KE +
Sbjct: 130 MEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPT-DVLVNKLDEICTKENVNFRGS 188
Query: 143 FALR-LAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI---ISE 197
L+ L + ++ ++RRA+ L+ A ++ ++I D IR+ A +I + E
Sbjct: 189 DDLKFLIELAEGDMRRAVTLLQSAHRISA------EKITRED----IRNIAGVIPDNVVE 238
Query: 198 Q--SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEMAAMFEHR 253
Q + L + R+ + + + L LL+ ++A+ + ++ +E A+ EHR
Sbjct: 239 QIYTEPVLDRLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEHR 298
Query: 254 IHKGSKPIFHIEAYVASFMAMY 275
+ G+ + ++ A+ ++ +
Sbjct: 299 MKDGASELISLQDLAATIVSSH 320
>gi|167538762|ref|XP_001751040.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770449|gb|EDQ84145.1| predicted protein [Monosiga brevicollis MX1]
Length = 331
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 17/179 (9%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L +L H + N ++ + E PHLL YGP G GK + I A K+LYG
Sbjct: 24 WVEKYRPSSLDQLISHTEIINTIQRFINEDRLPHLLLYGPPGTGKTSTIKACAKQLYGKG 83
Query: 63 ----------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
++IL+E D ++ EAQ ALRR +E+Y R L N +S++ PA
Sbjct: 84 YKRMVLEVRLVTSGFKLVILDEADAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPA 143
Query: 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
++SRC R + +E+ S + + K E LT+ PE L + +D ++R+A+ + + S
Sbjct: 144 VQSRCTRFRFAPLSEDELKSQVQRVIKAENLTVTPEGIDALTRLADGDMRKALNILQVS 202
>gi|159115535|ref|XP_001707990.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803]
gi|157436099|gb|EDO80316.1| Replication factor C, subunit 5 [Giardia lamblia ATCC 50803]
Length = 373
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 151/360 (41%), Gaps = 96/360 (26%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W +KY P L+ +D+HC ++ + + PHLL +GP G+G+ TR++ ++ +YG
Sbjct: 1 MWCNKYTPTQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRVLGYIRSVYGV 60
Query: 62 ------PVIILNETDHLTREA------------------------QQALRRT-------- 83
P +L ET+ T E Q L+ T
Sbjct: 61 QTLDYIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTSSIGD 120
Query: 84 ------------------------MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
ME+Y TC+LIL A S+S +IP I SRC CIR+P
Sbjct: 121 KFKVVVLQDADKLSFTAQQALRRLMEQYAATCKLILMAESISGLIPPIVSRCFCIRVPGF 180
Query: 120 THEEIVSVL-TNICKK---EGLTIPPEFAL--RLAQQSDRNLRRAILMCEASKVQQYPFQ 173
+ EEIV L T I K +G T AL +A + +LRRA L+ + +
Sbjct: 181 SDEEIVHALETTITKHRLMQGFTKESLHALLPEVATVARGDLRRAFLLLQTYQYASSKKN 240
Query: 174 IDQQIVEPDWKIYIRDTAKLIIS--------------------EQSPKKLLEVRTRLYEL 213
+ Q + P+W+ + A + + EQS KL +R L E+
Sbjct: 241 VSVQSLVPEWETLCTNIASQVATARKMAAKSAEAARAGKSAKPEQS-DKLDVIRVTLVEM 299
Query: 214 LVHSIPVNVLFKYLLEGL------LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267
L +IP +++ L EG + + ++A +E R+ GS P++H+EA+
Sbjct: 300 LKKAIPADMILTKLYEGFKDQAKRMGQRSPQILLNLADLAMEYEARLIAGSNPLYHLEAF 359
>gi|356540777|ref|XP_003538861.1| PREDICTED: uncharacterized protein LOC100795321 [Glycine max]
Length = 731
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 150/335 (44%), Gaps = 64/335 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGK-------------- 48
W DK++P +L + +A L+ L+ +G PH+L GPSG+GK
Sbjct: 387 FWADKHQPASLNGFICNKHEAQLLKELVSQGSCPHILLLGPSGSGKRELAMAILREIYGD 446
Query: 49 --------------------------------KTRIMALLKELYG--------------- 61
K +M L+KE+
Sbjct: 447 ACCNDQRLKKVSVPITSSSHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKS 506
Query: 62 --PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
VI+L + Q ++ +++Y C+L+LC + +I +++R I++ AP
Sbjct: 507 DFKVIVLYDVHKAVDNIQHIIKWIIDRYSDICKLVLCCEDDADLIEPVKNRFKVIQVDAP 566
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ EI+ VL I K E + + FA ++A +S +NLR+AI+ EA YPF ++Q +
Sbjct: 567 QNHEIIEVLIQIAKNEEIDLSVNFAAKIATKSKQNLRKAIMALEACNAHNYPFS-EEQPI 625
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL 239
W+ + + A I+++ S +LL +R + LL+ + ++ + L+E LL ++ L
Sbjct: 626 PVGWEEIVIEVAAEILADPSFSRLLSIRGKFQMLLLDFVHPKLILQKLVEHLLKRIEASL 685
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
+ + A ++ R+ G + +E +VA FM+M
Sbjct: 686 RRELYYWHAYYDRRLPPGITALLKLEEFVAKFMSM 720
>gi|396082271|gb|AFN83881.1| DNA replication factor C small subunit [Encephalitozoon romaleae
SJ-2008]
Length = 354
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 10/238 (4%)
Query: 47 GKKTRIMALLKELY-GPV--IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103
G+ I+++LK P+ + + + LT EAQ ALRRT+E Y + R++L N +S++
Sbjct: 112 GQTKPILSMLKSAKKAPIRLVAITSAEELTLEAQAALRRTIEMYSSVLRVVLVCNELSRL 171
Query: 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163
I +RSRC +RIP ++E+I+S + I +KE IP E + ++S+ N+RRA+ + E
Sbjct: 172 IEPVRSRCFFLRIPGFSNEDIISNMCRISEKENYAIPKEKLEEICKESEGNMRRALCILE 231
Query: 164 ------ASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHS 217
K + P +I+ + ++ DW++ + + ++ S Q+P+ L+E+R LY LL
Sbjct: 232 LFCFNMIDKETKRP-KINVKDLKLDWELMVMGISSIVKSNQTPEGLVEIRKSLYMLLNSC 290
Query: 218 IPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
I + LL L+ D A +E RI G K I+H+E ++ S M ++
Sbjct: 291 ISPRTILIELLRSLILGEDFKTFLLLSHQALKYEERIRFGMKSIYHLEGFITSSMCVF 348
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W++KYRP + + K ++ L++ E PHL+ +G G GKKT ++ L+ LYG
Sbjct: 2 IWIEKYRPKSFDSIVGREKISSVLKSYTLE-TIPHLILHGGPGHGKKTTLLCLVTHLYG 59
>gi|308159636|gb|EFO62161.1| Replication factor C, subunit 5 [Giardia lamblia P15]
Length = 373
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 155/363 (42%), Gaps = 102/363 (28%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W +KY P L+ +D+HC ++ + + PHLL +GP G+G+ TRI+A ++ +YG
Sbjct: 1 MWCNKYTPAQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRILAYIRSVYGV 60
Query: 62 ------PVIILNETDHLTREA------------------------QQALRRT-------- 83
P +L ET+ T E Q L+ T
Sbjct: 61 QTLDYIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFVIQTVLKETASTSSIGD 120
Query: 84 ------------------------MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
ME+Y TC+LIL S+S +IP I SRC CIR+P
Sbjct: 121 KFKVVVLQDADKLSFTAQQALRRLMEQYSATCKLILVTESISGLIPPIVSRCFCIRVPGF 180
Query: 120 THEEIVSVL-TNICK--------KEGL-TIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169
+ EEIV L T I K KE L T+ PE +A + +LRRA L+ + +
Sbjct: 181 SDEEIVHALETTITKHRLMQSFTKESLRTLLPE----IAAVARGDLRRAFLLLQTYQYAS 236
Query: 170 YPFQIDQQIVEPDWKIYIRD--------------TAKLIISEQSPK-----KLLEVRTRL 210
+ Q + P+W+ + +A+ + S +S K KL +R L
Sbjct: 237 AKKNVSVQSLVPEWETLCTNIASQVATARKMAAKSAEAVKSGKSTKPEQSDKLEVIRVTL 296
Query: 211 YELLVHSIPVNVLFKYLLEGL------LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHI 264
E+L +IP +++ L EG + + ++A +E R+ GS P++H+
Sbjct: 297 VEMLKKAIPADMILAKLYEGFKDQAKRMGQRAPQILLNLADLAMEYEARLIAGSNPLYHL 356
Query: 265 EAY 267
EA+
Sbjct: 357 EAF 359
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 151/314 (48%), Gaps = 52/314 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L L H + + ++ ++ PHLLFYGP G GK + I+A+ KELYG
Sbjct: 10 WVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYGAK 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
VIIL+E D +TR+AQ ALRR
Sbjct: 70 NLKKMVLELNASDARGIDVVRNEILNFASSRSLHCKGFKVIILDECDAMTRDAQAALRRV 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEK+ R L N + ++IPAI+SRC R + E+++ + ++ ++EG+ I
Sbjct: 130 MEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDIDQNG 189
Query: 144 ALRLAQQSDRNLRRAILMCEASKV--QQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
L + ++ ++RR++ + +AS + + I ++ + IR + +++ Q K
Sbjct: 190 MDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLN-QDIK 248
Query: 202 KLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL----KSKSIEMAAMFEHRIHKG 257
++ L +L + I +N + L E + C++DL K++ + A E+R++ G
Sbjct: 249 YCMDSIEEL--MLENGIALNDVLTDLYEEI---CEADLPDIPKAEILSALADIEYRLNIG 303
Query: 258 SKPIFHIEAYVASF 271
+ + VA+F
Sbjct: 304 ATEKIQLAVIVAAF 317
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 101/219 (46%), Gaps = 42/219 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W++KYRPNNL ++ L+N +KE PHLLF GP+G GK T +AL +E++G
Sbjct: 4 IWIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGE 63
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
+I L+E D LT AQ ALRRT
Sbjct: 64 LWQHNLHELNASDERGIDVVRGKIKEFARTAPLGEKGFKIIFLDEADALTGAAQAALRRT 123
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEKY TCR ++ N S++I I+SRC R E++ L + KE + + E
Sbjct: 124 MEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENVKVTKEA 183
Query: 144 ALRLAQQSDRNLRRAI---LMCEASKVQQYPFQIDQQIV 179
L + +LRRAI M A+K + P + Q +
Sbjct: 184 FESLTYLAQGDLRRAINGLQMAAAAKTEVTPDVVYQAVA 222
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 52/314 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L L H + + ++ + PHLLFYGP G GK + I+A+ KELYG
Sbjct: 10 WVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYGAK 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
VIIL+E D +TR+AQ ALRR
Sbjct: 70 NLKKMVLELNASDARGINVVRNEILNFASSRSLHCKGFKVIILDECDAMTRDAQAALRRV 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEK+ R L N + ++IPAI+SRC R + E+++ + ++ ++EG+ I
Sbjct: 130 MEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDIDQNG 189
Query: 144 ALRLAQQSDRNLRRAILMCEASKV--QQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
L + ++ ++RR++ + +AS + + I ++ + IR + +++ Q K
Sbjct: 190 MDLLLKMAEGDMRRSLNILQASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLN-QDIK 248
Query: 202 KLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL----KSKSIEMAAMFEHRIHKG 257
++ L +L + I +N + L E + C++DL K++ + A E+R++ G
Sbjct: 249 YCMDSIEEL--MLENGIALNDVLTDLYEEI---CEADLPDIPKAEILSALADIEYRLNIG 303
Query: 258 SKPIFHIEAYVASF 271
+ + VA+F
Sbjct: 304 ATEKIQLAVIVAAF 317
>gi|297735132|emb|CBI17494.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 1/212 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D Q ++ M+ Y C+LI+C V+ ++++RC I++ AP
Sbjct: 487 VLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESVKNRCKVIKLEAPVTH 546
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI+ VL I +KE +P FA ++A +S ++LR+AI+ EA K YPF +D Q +
Sbjct: 547 EIMEVLIQIARKEDFDLPMSFAAKIATKSKQDLRKAIMALEACKAHNYPF-LDDQPIPLG 605
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ + + A ++ + SP +L +R ++ +LLV + ++ + L+E L D+ K
Sbjct: 606 WEEVLVELAAEVLVDPSPNRLFYLRGKIQKLLVDFVHPKLILQKLVEQFLKGTDASQKRD 665
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
A ++ R+ G+ + +E +VA FM++
Sbjct: 666 LYYWHAYYDKRLPAGTSALLKLEEFVAKFMSI 697
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W DK+RP +L H ++A L+ L+ PH+LF GPSG+GKK MALL+E+YG
Sbjct: 356 FWADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYG 414
>gi|253744271|gb|EET00499.1| Replication factor C, subunit 5 [Giardia intestinalis ATCC 50581]
Length = 373
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 158/371 (42%), Gaps = 106/371 (28%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W +KY P L +D+H ++ + + PHLL +GP G+G+ TRI+A ++ +YG
Sbjct: 1 MWCNKYTPTQLDAMDYHRDATRLFISVARAKNPPHLLVHGPRGSGRHTRILAYIRSVYGV 60
Query: 62 ------PVIILNETDHLTREA------------------------QQALRRT-------- 83
P +L ET+ T E Q L+ T
Sbjct: 61 QTLDYIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTSSIGD 120
Query: 84 ------------------------MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
ME+Y TC+LIL A S+S +I I SRC CIR+P
Sbjct: 121 KFKVVVLQDADKLSFTAQQALRRLMEQYAATCKLILVAESISGLISPIVSRCFCIRVPGF 180
Query: 120 THEEIVSVL-TNICK--------KEGL-TIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169
+ EEIV L T I K KE L T+ PE +A + +LRRA L+ + +
Sbjct: 181 SDEEIVHALDTTITKHRLMPNFTKESLHTLLPE----VAAVACGDLRRAFLLLQTYQYAS 236
Query: 170 YPFQIDQQIVEPDWKIYIRDTAKLIIS--------------------EQSPKKLLEVRTR 209
+ Q + P+W+ + A + + EQS KL +RT
Sbjct: 237 AKRNVSIQSLVPEWETLCTNIASQVATARKMAIKSAEATKSGKGTKPEQS-DKLEIIRTT 295
Query: 210 LYELLVHSIPVNVLFKYLLEGL------LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFH 263
L E+L SIP +++ L EG + + + + ++A +E R+ GS P++H
Sbjct: 296 LVEMLKKSIPADMILAKLYEGFKDQTKGMGHRAAQILLNLADLAMEYEARLVAGSNPLYH 355
Query: 264 IEAYVASFMAM 274
+EA+ SF A+
Sbjct: 356 LEAF--SFSAL 364
>gi|356495392|ref|XP_003516562.1| PREDICTED: uncharacterized protein LOC100817775 [Glycine max]
Length = 718
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 64/335 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGK-------------- 48
W DK+ P +L + ++A L+ L+ +G PH+L GPSG+GK
Sbjct: 374 FWADKHEPASLNGFICNRQEAQLLKELVSQGSCPHILLQGPSGSGKRELAMALLREIYGD 433
Query: 49 --------------------------------KTRIMALLKELYG--------------- 61
K +M L+KE+
Sbjct: 434 ACCNDQRLKKVSVPITSSSHHMELDVNSESNAKYALMGLIKEISNIYAVAPEVSNINFKS 493
Query: 62 --PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
VI+L + + ++ +++Y C+L+LC + +I +++R I++ AP
Sbjct: 494 DFKVIVLYDVHKAVDNIRHIIKWIIDRYSDICKLVLCCEDDADIIEHVKNRFKVIQVDAP 553
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ EI+ VL I K E + + FA ++A +S +NLR+AI+ EA K YPF +Q I
Sbjct: 554 QNHEIIEVLIQIAKNEEIDLSMNFAAKIATKSKQNLRKAIMALEACKAHNYPFSAEQPI- 612
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL 239
W+ + + A I+++ S +LL +R + LL+ + ++ + L+ LL + L
Sbjct: 613 PVGWEEIVIEVAAEILADPSFSRLLSIRGKFQMLLLDFVHPKLILQKLVGHLLKRIEVSL 672
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
+ + A ++ R+ G + +E +VA FM+M
Sbjct: 673 RRELYYWHAYYDRRLPPGITALLKLEEFVAKFMSM 707
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + +++ D +A L+ +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 7 FWFEKYRPRSFEEVVDLEEVKA-RLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 65
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 66 DAWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y T R IL AN +S++I I SRC R P E + L I K+EG+T+ +
Sbjct: 126 IMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGITVTED 185
Query: 143 FALRLAQQSDRNLRRAI 159
+ + S ++RRAI
Sbjct: 186 GIDAIYEISQGDMRRAI 202
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE L +
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V +I ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---EITEEIV---YKVASKARPDEIKKMTQLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E R +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAREQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE L +
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V +I ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---EITEEIV---YKVASKARPDEIKKMTQLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E R +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAREQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 138/326 (42%), Gaps = 72/326 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LWV+++RP L L L ++ GD PHLLFYGP G GK T +AL +ELYG
Sbjct: 8 LWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGD 67
Query: 62 ----------------------------------PV----IILNETDHLTREAQQALRRT 83
PV +IL+E D++T +AQQALRR
Sbjct: 68 SWRSSVLELNASDERGIDVIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRI 127
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y +T R IL AN +S +I I+SRC R E ++ L I K+ G+ + +
Sbjct: 128 MEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTEDG 187
Query: 144 ALRLAQQSDRNLRRAILMCEASK--------------VQQYPFQIDQQIVEPDWKIYIRD 189
+ + S ++R+AI + + V + F++ + +E D
Sbjct: 188 LEAIWEVSQGDMRKAINTLQTTTTTNKKVDREAVYRVVGRVEFKVVDEFIESALSGRFED 247
Query: 190 TAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN----CDSDLKSKSIE 245
+ KL+ R +Y V + L KY+ + LL N D K + E
Sbjct: 248 SRKLL------------RNIMYTYGVSGVE---LLKYIEDELLINDKFKLPVDAKVEVSE 292
Query: 246 MAAMFEHRIHKGSKPIFHIEAYVASF 271
+ A ++R+ GS + A +A
Sbjct: 293 LVADIDNRLVTGSDEEIQLTALIAKL 318
>gi|19074687|ref|NP_586193.1| DNA REPLICATION FACTOR C 38kDa SUBUNIT [Encephalitozoon cuniculi
GB-M1]
gi|19069329|emb|CAD25797.1| DNA REPLICATION FACTOR C 38kDa SUBUNIT [Encephalitozoon cuniculi
GB-M1]
Length = 354
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 118/218 (54%), Gaps = 5/218 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++++ + LT EAQ ALRRT+E Y R++L N +S++I IRSRC +RIP + E
Sbjct: 131 LVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFLRIPGFSDE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE-----ASKVQQYPFQIDQQ 177
++ S + I +KE T+P E + + ++S ++RRA+ + E ++ + +I +
Sbjct: 191 DVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNESEAKRAKIGGR 250
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
++ +W++ + A ++ Q+ L+E+R LY LL IP + LL L+ D
Sbjct: 251 DLKLEWELAVMSIAGVVKCNQTSSGLVEIRKTLYMLLNSCIPPRTILVELLRNLILGEDF 310
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ A +E RI G K I+H+E +V S M ++
Sbjct: 311 RTFLLLSQHALKYEERIRLGMKSIYHLEGFVTSSMCVF 348
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + ++ + + L++ E PH++ +G SG GKKT ++ L+ LYG
Sbjct: 2 IWIEKYRPRSFDEMIGREEASGLLKSYTLE-TIPHMIVHGRSGHGKKTVLLCLVNHLYGS 60
Query: 63 V 63
+
Sbjct: 61 I 61
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 51/311 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ + L+N +++ PHLLF G G GK T + L K+LYG
Sbjct: 5 WVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGDD 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E+++ + I + E +TI +
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENENITIEKSGS 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+++ ++ A+ V ID+ IV +K+ R D K +I
Sbjct: 185 DAIIYVSEGDMRKSVNVLQTAAAVSNV---IDEDIV---YKVSSRARPDEIKKMIDLAIN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
+ +E R +LY+L++ ++L + E + + + K IE A + RI +G
Sbjct: 239 ARFMEAREQLYKLMIDWGMGGQDILTQVFREVPYLDIEENEKVSLIEAIAECDFRIVEGG 298
Query: 259 KPIFHIEAYVA 269
+ A +A
Sbjct: 299 NDRIQLSALLA 309
>gi|405118682|gb|AFR93456.1| DNA clamp loader [Cryptococcus neoformans var. grubii H99]
Length = 165
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 90/155 (58%)
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
+ VL + KKE +P + + S NLR+A+L+ EA ++Q D ++ +PDW
Sbjct: 1 MTKVLNYVAKKERFALPSSANNAILETSQGNLRKALLVFEAMRMQHPDLSGDVEVAKPDW 60
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS 243
+ Y A I+ EQ+ ++LL++R ++YELL H IP V+ K + E L+ D LK +
Sbjct: 61 ETYCGKVADAILQEQTAQRLLDIRAKIYELLSHCIPPTVVMKTISERLVEKVDDTLKPQI 120
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ A +E R+ GSK IFHIEA++A M +Y Q+
Sbjct: 121 VHWTAYYELRMRMGSKKIFHIEAFIAKVMTVYKQY 155
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE LT+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V + ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIV---YKVASKARPDEIKKMTQLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E R +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAREQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 58/317 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP+ L ++ + + L ++E PH+L+ GP+G GK T +AL K+LY
Sbjct: 2 IDVWTEKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLY 61
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G +I L+E D LT +AQQALRR
Sbjct: 62 GDQWNQNFMETNASDERGIDVVREKIKDFARTKPIEAEYKIIFLDEADALTPDAQQALRR 121
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME++ CR IL N S++I I+SRC R E++ + + I + EG + +
Sbjct: 122 TMEQFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKVSED 181
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK- 201
+ + SD +LRR + + + +Q + +I E D + A + E+ K
Sbjct: 182 ALEAVMRVSDGDLRRVTNVLQTASIQ------NSEIEEED----VYGVAASLRPEEITKI 231
Query: 202 -------KLLEVRTRLYELLVHS--IPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEH 252
+ ++ R +L +L++ +V+ E + K I+ FE
Sbjct: 232 LELALKERFMDARDQLSDLMIERGLDGQDVIDSIHREVYDLDISEQAKLTIIDNLGEFEF 291
Query: 253 RIHKGSKPIFHIEAYVA 269
RI +G P IEA +A
Sbjct: 292 RISEGGSPDIQIEALLA 308
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 146/322 (45%), Gaps = 63/322 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + L+ +++ PHLLF GP G GK T + L ++L+G
Sbjct: 5 WVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGEN 64
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+I L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTPDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E+I L I +KEGL +
Sbjct: 125 EKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEGLKLTESGL 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ + + ID +IV +K+ R + K ++
Sbjct: 185 EAIIYVSEGDMRKAINVLQTAAALSEV---IDDEIV---YKVSSRARPEEVKKMMELALE 238
Query: 201 KKLLEVRTRLYELLVH-----SIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMF---EH 252
K +E R LY+L+V +N +F+ + N D D + K +E+A +
Sbjct: 239 GKFVEARDLLYKLMVEWGMSGEDILNQMFRE-----INNLDID-ERKKVELADAIGETDF 292
Query: 253 RIHKGSKPIFHIEAYVASFMAM 274
RI +G+ + A +A M
Sbjct: 293 RIVEGANERIQLSALLAKMALM 314
>gi|449330012|gb|AGE96278.1| DNA replication factor c 38kDa subunit [Encephalitozoon cuniculi]
Length = 354
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 5/218 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++++ + LT EAQ ALRRT+E Y R++L N +S++I IRSRC +RIP + E
Sbjct: 131 LVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFLRIPGFSDE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE-----ASKVQQYPFQIDQQ 177
++ S + I +KE T+P E + + ++S ++RRA+ + E ++ + +I +
Sbjct: 191 DVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLELVCFNMNESEAKRAKIGGR 250
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
++ +W++ + A + Q+ L+E+R LY LL IP + LL L+ D
Sbjct: 251 DLKLEWELAVMSIAGAVKCNQTSSGLVEIRKTLYMLLNSCIPPRTILVELLRNLILGEDF 310
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ A +E RI G K I+H+E +V S M ++
Sbjct: 311 RTFLLLSQHALKYEERIRLGMKSIYHLEGFVTSSMCVF 348
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + ++ + + L++ E PH++ +G SG GKKT ++ L+ LYG
Sbjct: 2 IWIEKYRPRSFDEMIGREEASGLLKSYTLE-TIPHMIVHGRSGHGKKTVLLCLVNHLYGS 60
Query: 63 V 63
+
Sbjct: 61 I 61
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+++W +KYRP L + + N L++ +K GD PHL+F GP+G GK + +AL EL+
Sbjct: 2 INIWTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELF 61
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G +I L+E D LT EAQ ALR
Sbjct: 62 GDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLGFKIIFLDEADQLTNEAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME + +T R I N S++IP I+SRC+ +R E + L I K E I
Sbjct: 122 RTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDD 181
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
+ + + SD ++R+AI + +A
Sbjct: 182 DSLDAIYEISDGDMRKAINVMQA 204
>gi|302804015|ref|XP_002983760.1| hypothetical protein SELMODRAFT_119010 [Selaginella moellendorffii]
gi|300148597|gb|EFJ15256.1| hypothetical protein SELMODRAFT_119010 [Selaginella moellendorffii]
Length = 260
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 129/259 (49%), Gaps = 61/259 (23%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWV+K+RP +L +C+QA+ L+ L+ G HLLF +G
Sbjct: 1 LWVNKHRPESLSSFVINCRQAHDLKQLISAGHCHHLLFEGPPGCGKKSLIMALLRDAFGI 60
Query: 44 S-------------------------GAGKKTRIMALLKELYGP--------------VI 64
S G + + LLKE+ V+
Sbjct: 61 SAWLGTKVSLPITSSAHHVELNLLHVGVYLRPVLTTLLKEMKVACTAYDNDSYIRSYKVL 120
Query: 65 ILNETDHLTREAQQALRRTMEKYITTCR-LILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+L++ D ++ EAQQ +R M++Y C+ ++LC + S++ ++R RC+ + + PT ++
Sbjct: 121 VLHDADKVSAEAQQHIRWLMDRYSDYCKFMLLCCSQPSKLSDSVRLRCIVVDVHNPTVDD 180
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
+V VL + K+E L + FALR+A+ S +N R+A+L EA K++QYPF + Q++ +W
Sbjct: 181 VVQVLYFVAKRENLDLQEHFALRIAKAS-KNFRQAVLSLEACKLKQYPFD-ENQVIAIEW 238
Query: 184 KIYIRDTAKLIISEQSPKK 202
+ I A+ II EQ+P++
Sbjct: 239 EDDIVSMARDIIDEQNPRR 257
>gi|401827719|ref|XP_003888152.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392999352|gb|AFM99171.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 354
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+I + + LT EAQ ALRRT+E Y + R++L N +S++I IRSRC +RIP+ +
Sbjct: 131 LIAITSAEELTLEAQAALRRTIEMYSSVLRVVLICNELSRLIEPIRSRCFFLRIPSFSDG 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI----LMC-EASKVQQYPFQIDQQ 177
+I+S + I +KE +P E + + S+ N+RRA+ L+C + + + + +
Sbjct: 191 DIMSNMCMISEKENYAVPKERLEEICRASEGNMRRALCILELLCFNMNDKETKRLKDNGK 250
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS 237
+ DW++ + +I S Q+P+ L+E+R LY LL I + LL L+ D
Sbjct: 251 DLRLDWELAVTGITSIIKSNQTPEGLIEIRKSLYTLLNSCISPRTILIELLRNLILGEDF 310
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ A +E RI G K I+H+E ++ S M +
Sbjct: 311 KMFLSLSRSALKYEERIRFGMKSIYHLEGFITSSMCAF 348
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W++KYRP + ++ + ++ L++ E PH++ +G SG GKKT ++ L+ LYG
Sbjct: 2 IWIEKYRPKSFDRVVGREEISSVLKSYTLE-TIPHMILHGRSGCGKKTTLLCLVNHLYG 59
>gi|384484069|gb|EIE76249.1| hypothetical protein RO3G_00953 [Rhizopus delemar RA 99-880]
Length = 160
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 76/108 (70%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++++++ D LTREAQ ALRRTMEKY ++ RLILC N++S++IP +RSRCL IR+P P E
Sbjct: 50 IVVIDKADELTREAQAALRRTMEKYTSSMRLILCCNTLSKIIPPVRSRCLLIRVPRPEIE 109
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY 170
E V L N+ KE + + A +A+ S+RN+R ++L E + Q++
Sbjct: 110 ETVGALLNVASKENFQLSKQLAADIAEHSERNMRASLLALETTATQRH 157
>gi|424812315|ref|ZP_18237555.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756537|gb|EGQ40120.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 317
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 68/323 (21%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP+ L ++ L+ ++EG PHL+F GP+G GK T +++ K+LY
Sbjct: 4 IDIWTEKYRPDTLDEVVGQQDIVERLQAFVEEGQIPHLMFSGPAGTGKTTSAVSVAKDLY 63
Query: 61 G--------------------------------PV------IILNETDHLTREAQQALRR 82
G PV I L+E D LT +AQQALRR
Sbjct: 64 GSEWRQNFKETNASDERGIDVVRDQIKSFARTKPVNAEYKMIFLDEADALTTDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME++ R +L N S++I I+SRC R E++ +T + + EG I E
Sbjct: 124 TMEQFSDNARFVLSCNYSSKIIDPIQSRCALFRFNRLEEEQVRRYITRVAEGEGFRISEE 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY----------IRDTAK 192
+ + S +LRR + + +++ +I E D IY IR+ K
Sbjct: 184 AIQGVMRVSGGDLRRTTNVLQTVALRK------DEIEEDD--IYTAAASLRPQEIREILK 235
Query: 193 LIISEQSPKKLLEVRTRLYELLVH-----SIPVNVLFKYLLEGLLANCDSDLKSKSIEMA 247
L ++ + ++ R +L EL++ ++ + + L + + + K + +E
Sbjct: 236 LALN----QDFIDAREKLSELMIDRGLDGKDVIDAVHRELFD---LDIPDEAKMEMVEFL 288
Query: 248 AMFEHRIHKGSKPIFHIEAYVAS 270
++ RI +G IEA +AS
Sbjct: 289 GEYQFRIAEGGSNDIQIEAMLAS 311
>gi|429965353|gb|ELA47350.1| hypothetical protein VCUG_01119 [Vavraia culicis 'floridensis']
Length = 353
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+I++ + LT++AQ ALRRT+E Y R+IL N ++ +I I+SR LC+RI +
Sbjct: 132 LILITRAEKLTKDAQAALRRTVETYADNFRMILICNDITGIIDPIKSRMLCLRITVAPSD 191
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE------ASKVQQYPFQIDQ 176
++ L+ I +EG+ E ++ + N RRA+ + A + + + +
Sbjct: 192 LLLRTLSEINTQEGICGSKETLKQIINDCNGNFRRALFFLQRTQLDGAGEEKSKRLKKQE 251
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+ DW+I + D ++++ EQS +L +R +L ELL+ +P ++ K L L++
Sbjct: 252 STFKLDWEITVADVVEMMMKEQSNTMVLNIRLQLNELLIKCVPPRLILKTLFAILISKVK 311
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ A ++ RI G+K IFH+EAYV + M ++
Sbjct: 312 PIDHHNLCRLTAKYDGRITLGTKSIFHLEAYVIAVMLLF 350
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
KY+P L+ + F+ K A +L+N PHL+ +G G GK+T + A + L+G
Sbjct: 6 KYQPKTLEDIQFNEKHAKNLKNF-TLSTIPHLIVHGRPGCGKRTLVYAFINHLFG 59
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 51/311 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR +L N S++IP I+SRC R E++V L I +KE LT+
Sbjct: 125 EKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ S+ ++R+AI L A+ +I ++ I+ +L ++ K
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALN----GK 240
Query: 203 LLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHKGS 258
+E R +LY L++ ++L + E + N D K K +E + RI +GS
Sbjct: 241 FVESREQLYNLMIDWGMSGEDILIQIFRE--VPNLDISEKEKVHLVEAIGECDFRIVEGS 298
Query: 259 KPIFHIEAYVA 269
+ A +A
Sbjct: 299 NERIQLSALLA 309
>gi|449528029|ref|XP_004171009.1| PREDICTED: uncharacterized LOC101218071 [Cucumis sativus]
Length = 723
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 116/216 (53%), Gaps = 5/216 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L + D T + Q LR M+ Y C+++LC S ++ ++ SRC I+I P
Sbjct: 500 VVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCCEDDSGILESVISRCKVIKINPPVTH 559
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP- 181
EI+ VL I +KE +P FA ++A ++ +NLR+AI+ EA K YPF DQ I P
Sbjct: 560 EIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEACKAHNYPFSDDQPI--PI 617
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
W+ + + A I+ + S +L +V+ ++ +LLV S+ ++ + L+E L + +
Sbjct: 618 GWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDSVHPKLILQKLVEQFLKRIEMRSRR 677
Query: 242 KSIEMAAMFEHR--IHKGSKPIFHIEAYVASFMAMY 275
+ A + R I G + +E +VA FM+MY
Sbjct: 678 ELYYWHAYYNKRLPIETGVGALPKLEEFVAKFMSMY 713
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W D++RP +L FH +A L+ L+ + FPH+LF GP G+GK+ +MALL+E+YG
Sbjct: 377 FWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPRGSGKRVLMMALLREIYG 435
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 40/215 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L + + + D PHLLF GP+G GK T MA+ +E+YG
Sbjct: 14 IWIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGD 73
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 74 DWRENFLELNASDERGIDVVRDRIKDFARTSFGGYDYRIIFLDEADALTSDAQSALRRTM 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R E + + + ++EG+ + +
Sbjct: 134 EQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGIEVTDDGV 193
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L +D ++R+A+ +A+ + +D + V
Sbjct: 194 DALVYAADGDMRKALNGLQAAATTEGA--VDDEAV 226
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 47/254 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP NL ++ H + L+N +++ PHLLF G G GK T + L K+LYG
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT 64
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR +L N S++IP I+SRC R E++V L I +KE + +
Sbjct: 125 EKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSGM 184
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSPK 201
+ S+ ++R+AI + + I++ ++ +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTGAAVSK--NINETVI---YKVASKARPDEIKKMTELALNG 239
Query: 202 KLLEVRTRLYELLV 215
K +E R +LY+L++
Sbjct: 240 KFVEAREQLYKLMI 253
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L +++ D PHL+F GP+G GK T A+ +E+YG
Sbjct: 20 VWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYGD 79
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 80 DWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 139
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I + EG+ + +
Sbjct: 140 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAETEGIEVTDDGV 199
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 200 DALVYAADGDMRKAINALQAAAV 222
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L + + + D PHLLF GP+G GK T MA+ +E+YG
Sbjct: 12 IWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYGD 71
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 72 DWRENFLELNASDERGIDVVRDRIKNFARASFGGYDYRIIFLDEADALTSDAQSALRRTM 131
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N +Q+I I+SRC R + + + I ++EG+ I +
Sbjct: 132 EQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEEGIEITEDGI 191
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++R+AI +A+
Sbjct: 192 DALVYAADGDMRKAINGLQAA 212
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 138/311 (44%), Gaps = 43/311 (13%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+WV+KYRP +L ++ + + L++ +K PHLLF GP+G GK T +AL +EL+G
Sbjct: 3 DVWVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFG 62
Query: 62 ---------------------------------------PVIILNETDHLTREAQQALRR 82
+I L+E D LT +AQ ALRR
Sbjct: 63 ENWRASFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDAQAALRR 122
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E+I L I EG I +
Sbjct: 123 TMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGKKITED 182
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ S ++R+AI + + S ID+ +V + R+ + ++ +
Sbjct: 183 ALNAIVYISGGDMRKAINILQMSAA--ISDTIDEGVVYKATGLAKREDVEDVLKKALAGD 240
Query: 203 LLEVRTRLYELLVH-SIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKP 260
+E R +L +LLV + + K + + D LK + ++ E RI +G+
Sbjct: 241 FIEARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDKTGEIEFRIVEGANE 300
Query: 261 IFHIEAYVASF 271
++A +A F
Sbjct: 301 RIQLDALLAYF 311
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE LT+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V + ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIV---YKVASKARPDEIKKMTHLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E + +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAKEQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>gi|302817642|ref|XP_002990496.1| hypothetical protein SELMODRAFT_131813 [Selaginella moellendorffii]
gi|300141664|gb|EFJ08373.1| hypothetical protein SELMODRAFT_131813 [Selaginella moellendorffii]
Length = 260
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 128/259 (49%), Gaps = 61/259 (23%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------YGP 43
LWV+K+RP +L +C+QA+ L+ L+ G HLLF +G
Sbjct: 1 LWVNKHRPESLSSFVINCRQAHDLKQLISAGHCHHLLFEGPPGCGKKSLIMALLRDAFGI 60
Query: 44 S-------------------------GAGKKTRIMALLKELYGP--------------VI 64
S G + + LLKE+ V+
Sbjct: 61 SAWLGTKVSLPIASSAHHVELNLLHVGVYLRPVLTTLLKEMKVACTAYDNDSYIRSYKVL 120
Query: 65 ILNETDHLTREAQQALRRTMEKYITTCR-LILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+L++ D ++ EAQQ +R M++Y C+ ++LC + S++ ++R RC+ + + PT ++
Sbjct: 121 VLHDADEVSAEAQQHIRWLMDRYSDYCKFMLLCCSQPSKLSDSVRLRCIVVDVHNPTVDD 180
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
+V VL + K+E L + FA R+A+ S +N R+A+L EA K++QYPF + Q++ +W
Sbjct: 181 VVQVLYFVAKRENLDLQEHFAWRIAKAS-KNFRQAVLSLEACKLKQYPFD-ENQVIAIEW 238
Query: 184 KIYIRDTAKLIISEQSPKK 202
+ I A+ II EQ+P++
Sbjct: 239 ENDIVSMARDIIDEQNPRR 257
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+N +++ D PH++F GP+G GK A+ +E+YG
Sbjct: 18 VWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGVGKTASSQAIAREIYGD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYNYRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I EG+ + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIADTEGIAVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINGLQAAAV 220
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 52/258 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP +L + L++ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 6 LWAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYGE 65
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++L+E D++T +AQQALRRT
Sbjct: 66 NYEQYLLELNASDERGIDVIRNKVKEFARTVTPGSVPFKTVLLDEADNMTADAQQALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL N +S++I I+SR R E+++S L I K+EG+ P+
Sbjct: 126 MELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGVQYDPKA 185
Query: 144 ALRLAQQSDRNLRRAILMCEASK-----VQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQ 198
+ ++ ++R+AI + +A+ Q+ F++ + +P +RD KL +
Sbjct: 186 LDVIYDVTNGDMRKAINVLQAASAYGKVTQEAVFKV-LGLAQPKE---VRDMVKLALQ-- 239
Query: 199 SPKKLLEVRTRLYELLVH 216
+ ++ R++L L+++
Sbjct: 240 --GRFMDARSKLLSLIIN 255
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + +++ D +A L+ +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKA-RLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 DAWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y T R IL AN +S +I I+SRC R E ++S L I ++EG+ I E
Sbjct: 124 IMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGVKISQE 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + ++RRAI
Sbjct: 184 ALDAIFDFTQGDMRRAI 200
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 40/215 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L + + + D PHLLF GP+G GK T MA+ +E+YG
Sbjct: 14 IWIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGD 73
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 74 DWRENFLELNASDERGIDVVRDRIKDFARTSFGGYDYRIIFLDEADALTSDAQSALRRTM 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R E + + + + EG+ + +
Sbjct: 134 EQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGIEVTDDGV 193
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L +D ++R+A+ +A+ + +D + V
Sbjct: 194 DALVYAADGDMRKALNGLQAAATMEGA--VDDEAV 226
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 39/207 (18%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+++W +KYRP+ L + N L +K+ + PHL+F GP G GK + +AL L+
Sbjct: 2 LNIWTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLF 61
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G +I L+E DHLT +AQ ALR
Sbjct: 62 GDSWKENFMELNASNDRGIDIIRDNIKNFAKIRPSNDLGFKIIFLDEADHLTGDAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME + T R I N S++IP I+SRC+ +R E + + L +I KKE I
Sbjct: 122 RTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENFEIDD 181
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQ 168
+ + + SD ++R+A+ + +A K+
Sbjct: 182 DSLDAIYEISDGDMRKAVNVLQAVKLS 208
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 136/311 (43%), Gaps = 43/311 (13%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+WV+KYRP NL ++ + L++ +K PHLLF GP+G GK T +AL +EL+G
Sbjct: 3 DVWVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFG 62
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
+I L+E D LT +AQ ALRR
Sbjct: 63 DNWRSSFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDAQAALRR 122
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E+I L I + EG I +
Sbjct: 123 TMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGKEITDD 182
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ S ++R+AI + + S ID+ V I R+ + ++ +
Sbjct: 183 ALDAIVYISSGDMRKAINILQMSAA--ISDTIDEGTVYKATGIAKREDVEEVVKKALGGD 240
Query: 203 LLEVRTRLYELLVH-SIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKP 260
+ R +L +LLV + + K + + D LK + ++ E R+ +G+
Sbjct: 241 FISARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDRTGEIEFRMVEGANE 300
Query: 261 IFHIEAYVASF 271
++A +A F
Sbjct: 301 RIQLDALLAYF 311
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 43/218 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ + + +R ++EG PHLLFYGP G GK + I+AL +E+YGP
Sbjct: 10 WVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYGPK 69
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 70 YKNMVLELNASDDRGIDVVRNQIKDFASTMQIFSKGFKLIILDEADAMTSVAQNALRRII 129
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + I L N+ KE +TI P+
Sbjct: 130 EKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKEKITIKPDAI 189
Query: 145 LRLAQQSDRNLRRAILM---CEASKVQQYPFQIDQQIV 179
L S ++RRA+ + C+AS + +ID++++
Sbjct: 190 ESLLTLSQGDMRRALNVLQSCKAS-LDNPDDEIDEEMI 226
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L++ +K G PHLLF GP G GK T +AL +EL+G
Sbjct: 15 WVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFGEN 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRRTM
Sbjct: 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + R IL AN S++I I+SRC R + E++ L I ++EGL + E
Sbjct: 135 EMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAEQEGLELTEEGL 194
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
+ ++ +LRRAI + +A+
Sbjct: 195 QAILYVAEGDLRRAINVLQAA 215
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP+ L ++ LR+ + + D PHLLF GP+G GK T MA+ +E+YG
Sbjct: 13 IWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGD 72
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 73 DWRDNFLELNASDERGIDVVRDRIKNFARTSFGGYDYRVIFLDEADALTSDAQSALRRTM 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N +Q+I I+SRC R + + I +EG+ I +
Sbjct: 133 EQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEEGIEITDDGV 192
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++R+AI +A+
Sbjct: 193 DALVYAADGDMRKAINGLQAA 213
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L+++ + N L ++E + PHLLF GP G GK T +AL +LYG
Sbjct: 4 LWAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGD 63
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D++T +AQQALRR
Sbjct: 64 EWRRYLLELNASDERGIAVIRSKVKEFARSKLPGDIPFKIVILDEADNMTADAQQALRRI 123
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y+ T R IL AN S++I I+SRC R E++ S L IC++E + +
Sbjct: 124 MEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKVKCDEDG 183
Query: 144 ALRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ + S ++R+AI ++ AS + + ++V +R+ L +S K
Sbjct: 184 LDVIYELSGGDMRKAINILQSASALGEVTVSNVYKVVGLAHPKEVREIITLALS----GK 239
Query: 203 LLEVRTRLYELLV 215
+E R +L+ L++
Sbjct: 240 FIEARDKLHNLMI 252
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 139/324 (42%), Gaps = 67/324 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L+ + L++ +K G PHLLF GP G GK T +AL +EL+G
Sbjct: 15 WVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEH 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRRTM
Sbjct: 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + T R IL N S++I I+SRC R +I + I + EGL + +
Sbjct: 135 EMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEGLELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL- 203
L ++ +LRRAI + +A+ +D++I D ++ L+ S P+ +
Sbjct: 195 QALLYVAEGDLRRAINVLQAAAA------LDRKIT--DENVF------LVASRARPEDVR 240
Query: 204 -----------LEVRTRLYELLVHS--IPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMF 250
L+ R +L E+L+ +VL + E D K + +
Sbjct: 241 EMMNLALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALADKIGEY 300
Query: 251 EHRIHKGSKPIFHIEAYVASFMAM 274
R+ +G+ + +EA +A F M
Sbjct: 301 NFRLVEGANEMIQLEALLAQFTLM 324
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 61/323 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP +L + L+ +K+ + PHLLF GP G GK T +AL+ +LYG
Sbjct: 8 LWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD 67
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 68 NYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALRRT 127
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL N +S++I I+SR R E++V+ L I K E + +
Sbjct: 128 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKA 187
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + ++R+AI + +AS V + VE +K+ IR+ L +
Sbjct: 188 LETIYDITQGDMRKAINILQASSV------YGKVTVEAVYKVLGLAQPKEIREMIMLALQ 241
Query: 197 EQSPKKLLEVRTRLYELLV-HSIPVNVLFKYL---LEGLLANCDSDLKSKSIEMAAMFEH 252
L+ R +L ELLV + + + K + + G N DLK ++ E+
Sbjct: 242 ----GNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEY 297
Query: 253 RIHKGSKPIFHIEAYVASFMAMY 275
RI +G+ + A +A +A+Y
Sbjct: 298 RIMEGADDEIQLNALLAK-LAVY 319
>gi|303391058|ref|XP_003073759.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303302907|gb|ADM12399.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 354
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 7/218 (3%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+I++ + L+ EAQ ALRRT+E Y R++L N +S++I IRSRC +RIP + E
Sbjct: 131 LIVITSAEELSLEAQAALRRTIEMYSNVLRVVLMCNELSRLIEPIRSRCFFLRIPGFSDE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE------ASKVQQYPFQIDQ 176
+I+S + I +KE T+P E + ++S+ N+RRA+ + E K + P + +
Sbjct: 191 DIMSNMRRILEKENYTVPEETLEEICRESEGNMRRALCILELFCFNMNEKEAKRP-KNNC 249
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+ ++ DW+I + A +I + + L+E+R LY LL I + LL L+ D
Sbjct: 250 KAMKLDWEIEVGSMAGVIKRNPTSEGLVEIRKSLYALLNTCISPRTILIGLLRNLVLGED 309
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
A +E RI G K I+H+E +VA+ M +
Sbjct: 310 FKTFLLLSRHALKYEERIRLGMKSIYHLEGFVAASMCV 347
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W++KYRP + K+ K ++ L++ E PH++ +G SG GKKT ++ L+ LYG
Sbjct: 2 IWIEKYRPTSFDKVVGRDKISSLLKSYTLE-TIPHMILHGKSGHGKKTTLLCLINHLYGG 60
Query: 62 -------PVIILNETDHLT---REAQQALRRTMEKYITTCRLIL--CANSMSQVIPAIRS 109
V +L+ T + E+ + + + +Y + ++ M Q P +
Sbjct: 61 NSEPKIRTVEVLSGTKKIEVSYMESDEYVEISPSQYGHHDKAVIQNIIKEMGQTKPILSM 120
Query: 110 RCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162
R P L I E L++ + ALR + N+ R +LMC
Sbjct: 121 LSRAKRTPIK--------LIVITSAEELSLEAQAALRRTIEMYSNVLRVVLMC 165
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP+ L ++ LR+ + + D PHLLF GP+G GK T MA+ +E+YG
Sbjct: 13 IWIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGD 72
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 73 DWRENFLELNASDERGIDVVRDRIKNFARTSFGGYDYRVIFLDEADALTSDAQSALRRTM 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N +Q+I I+SRC R + + I +EG+ I +
Sbjct: 133 EQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEEGIEITDDGV 192
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++R+AI +A+
Sbjct: 193 DALVYAADGDMRKAINGLQAA 213
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 137/315 (43%), Gaps = 54/315 (17%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L + + + L++ +K PHLLF G +G GK T +AL KE YG
Sbjct: 6 TIWIEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 EHWNVNFREMNASDERGIDVVRNQIKQFARTAPIGGAEFKILFLDEADALTNDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E I L +I + EGLT+ +
Sbjct: 126 TMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELMHIAENEGLTLSED 185
Query: 143 FALRLAQQSDRNLRRAILMCEASKV------QQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
+ S ++R+AI + + + ++ F+I +PD + + +
Sbjct: 186 AISAIIYVSAGDMRKAINALQGAAIIDPEIKEEMIFEI-TSTAKPDEILELLEIIIEADF 244
Query: 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEMAAMFEHRI 254
+ + KL E+ + I N L L ++++ +LK + I + RI
Sbjct: 245 DGAGHKLDELTVK------RGIAPNELINQLYRTIVSHKTIGRELKLEMISHLGETDFRI 298
Query: 255 HKGSKPIFHIEAYVA 269
+GS P +EA +A
Sbjct: 299 SEGSDPGIQMEALIA 313
>gi|242205746|ref|XP_002468730.1| predicted protein [Postia placenta Mad-698-R]
gi|220732115|gb|EED85953.1| predicted protein [Postia placenta Mad-698-R]
Length = 192
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 90/192 (46%), Gaps = 68/192 (35%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLF-------------------Y 41
MSLWVDK+RP L L +H + LR L GDFPH+LF Y
Sbjct: 1 MSLWVDKHRPRTLDDLHYHESLSARLRALAALGDFPHMLFYGPSGAGKKTRIACTLRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS G R++ LLKE+
Sbjct: 61 GKGAEKLKIDQRVFMTPSRRKLDVNVVQSNFHIEITPSEVGNYDRVVIQELLKEIAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE D L+R+AQ ALRRTMEKY+T R+ILCANS S++I I+SRCL
Sbjct: 121 VDLSAKQRFKVVVINEADSLSRDAQAALRRTMEKYMTNLRIILCANSTSRLIAPIKSRCL 180
Query: 113 CIRIPAPTHEEI 124
+R+ APT EE+
Sbjct: 181 LVRVAAPTTEEV 192
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L N +++ D PHLLF GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I EG+ + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIDVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVFAADGDMRKAINGLQAAAV 220
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 46/208 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ + + N L L+ + PHLLFYGP G GK + +A+ ++LYGP
Sbjct: 6 WVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPE 65
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T++AQ
Sbjct: 66 LMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPGYPCPPYKLLILDEADSMTQDAQ 125
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME Y R + N +S++I + SRC R + + +IC++EG+
Sbjct: 126 SALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHICEREGV 185
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEAS 165
T+ P L+ S +LRRAI +++
Sbjct: 186 TLAPGALEALSSVSGGDLRRAITTLQSA 213
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 138/317 (43%), Gaps = 61/317 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L ++ + L++ +K+ + PHLLF GP G GK +AL ++L+G
Sbjct: 5 IWVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGE 64
Query: 63 V---------------------------------------IILNETDHLTREAQQALRRT 83
V I L+E D LT +AQ ALRRT
Sbjct: 65 VWRENFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y CR IL N +S++I I+SRC + E + L I + EGL I E
Sbjct: 125 MEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGLEIDDEA 184
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL 203
L S + R+AI + + +D++I P+ I TA+ + +K+
Sbjct: 185 LEVLIYISGGDFRKAINALQGAAA------LDKRIT-PEILYQITATAR----PEELRKI 233
Query: 204 LEVRTRLYELLVHSIPVNVLFKYLLEG-----------LLANCDSDLKSKSIEMAAMFEH 252
++ + L + N++ +Y + G + +N D LK I+ +
Sbjct: 234 IDTALKGNYLQAKDMLENLMAEYGMSGEDVVSQLFREIMYSNLDEKLKVVLIDKLGEIDF 293
Query: 253 RIHKGSKPIFHIEAYVA 269
R+ +G+ + + AY+A
Sbjct: 294 RLTEGASELIQLNAYLA 310
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 53/316 (16%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W +KYRP L + + L++ +K G+ PHLLF GP G GK +AL K+++G
Sbjct: 5 DVWTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFG 64
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
VI L+E D LT +AQ ALRR
Sbjct: 65 DAWQNNFIELNASDERGIEVVRNNIKNFARTSPLGEARFKVIFLDEADALTADAQSALRR 124
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME+Y TCR I+ N S++I I+SRC R +++ +++ I K E + + P+
Sbjct: 125 TMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHIKVSPD 184
Query: 143 FALRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIY----IRDTAKLIISE 197
L + ++RRAI + AS V ++ + +V I I D KL ++
Sbjct: 185 GLEALIYVARGDMRRAINALQSASTVTKH---VTADVVFETMSIARPKEIEDMLKLALNG 241
Query: 198 QSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIH 255
Q ++ R +L +LL+ + + N + + + A D + ++ + R+
Sbjct: 242 Q----FMDARNKLDDLLIKYGLSGNDVVDQIYSAMFALGLDEGVLVDLVDRIGEADFRLT 297
Query: 256 KGSKPIFHIEAYVASF 271
+G+ +EA +A F
Sbjct: 298 EGANERIQVEALLAHF 313
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 39/203 (19%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+LWV+KYRP+ + + ++ +L G+ PHLLF+GP G GK T +A+ +ELYG
Sbjct: 6 TLWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
+IIL+E D++T +AQQALRR
Sbjct: 66 DAWRENVLELNASDERGIAMIREKVKEFAKTIPTVKAPFRLIILDEADNMTPDAQQALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y ++ R IL AN S +I I+SRC R + ++ L +I +EG+ + E
Sbjct: 126 IMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGVKVTDE 185
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
+ S ++R+AI +A+
Sbjct: 186 ALEAIWDISQGDMRKAINTLQAA 208
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 43/207 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ N +R ++ G PHLLFYGP G GK + I+AL +E+YGP
Sbjct: 11 WVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYGPH 70
Query: 63 ------------------------------------------VIILNETDHLTREAQQAL 80
+IIL+E D +T AQ +L
Sbjct: 71 YKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNSL 130
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR +E+Y CR + AN ++ PA+ SRC R E I S + N+ KE + I
Sbjct: 131 RRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKEKVNIT 190
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKV 167
P+ L + S ++RR++ + +A K
Sbjct: 191 PDALNALLRLSQGDMRRSLNVLQACKA 217
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWV+KYRP+ + + ++ +L G+ PHLLF+GP G GK T +A+ +ELYG
Sbjct: 7 LWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D++T +AQQALRR
Sbjct: 67 AWRENVLELNASDERGIAMIREKVKEFAKTMPTVKAPFRLIILDEADNMTPDAQQALRRI 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T+ R IL AN S +I I+SRC R + ++ L I KEG+ + +
Sbjct: 127 MEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKEGVKVTDDA 186
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S ++R+AI +A+
Sbjct: 187 LEAIWDVSQGDMRKAINTLQAA 208
>gi|357483535|ref|XP_003612054.1| Replication factor C subunit [Medicago truncatula]
gi|355513389|gb|AES95012.1| Replication factor C subunit [Medicago truncatula]
Length = 733
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 64/301 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGK-------------- 48
LW DK++P +L + ++A L+ L+ +G PH+L GPSG+GK
Sbjct: 413 LWADKHKPASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYGD 472
Query: 49 --------------------------------KTRIMALLKELYG--------------- 61
K +M L+KE+
Sbjct: 473 ACCNDKRTMKVSVPITSSSHHMEVNVNSEPNAKYALMGLIKEISNIYAITPEVSNVNFKS 532
Query: 62 --PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119
VII+ + + Q ++ +++Y C+L+LC +I +++R I + AP
Sbjct: 533 DYKVIIIYDVEKAAENIQHLIKWIIDRYSDICKLVLCCEDDENIIAQVKNRFKVINVDAP 592
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
EI+ VLT I KE + + FA+++A +S +NLR AIL EA + YPF ++Q +
Sbjct: 593 QTHEIIEVLTQIANKEEMDLSMNFAMKIATKSKQNLREAILALEACRAHNYPFS-EEQPI 651
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDL 239
W+ + + A I+++ S +LL +R + LL+ + ++ L+E L+ ++ L
Sbjct: 652 PVGWEKIVIEVATEILTDPSFSRLLSIRGKFQMLLLDFVHPRLILLKLVEQLIRRIEAGL 711
Query: 240 K 240
K
Sbjct: 712 K 712
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 43/206 (20%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++WV+KYRP L ++ H + LR L+ E PHLLFYGP G GK T I+A +E++G
Sbjct: 17 TIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAILACAREMFG 76
Query: 62 P-----------------------------------------VIILNETDHLTREAQQAL 80
++IL+E D +T AQ AL
Sbjct: 77 AQFKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAGIKLVILDEADAMTSAAQAAL 136
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTI 139
RR MEKY + R L N +++IPAI+SRC R P P +++ L I +EG+ +
Sbjct: 137 RRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPV-AQMIQRLEYIADREGVPV 195
Query: 140 PPEFALRLAQQSDRNLRRAILMCEAS 165
LA+ + ++RRAI + +++
Sbjct: 196 DRAAFDALARIAQGDMRRAIYLMQST 221
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L +L H + ++ + E PHLLFYGP G GK + I+A K+LY
Sbjct: 17 WVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDR 76
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GPV +IL+E D +T++AQ ALRR
Sbjct: 77 EFNSMVLELNASDDRGIDIVRGPVLSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 136
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + E ++ L ++ K+E + I P+
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHVDISPDG 196
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S+ ++RR++ + +++ +
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNM 220
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 56/260 (21%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP L ++ + L+ ++E + PHLLF GP G GK T AL +L+G
Sbjct: 9 LWAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFGE 68
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 69 NYRQYMLELNASDERGIETIRTKVKEFARSRTPPGIPFKIVLLDEADNMTADAQQALRRL 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL AN S++I I+SRC R E++V+ L IC++EG E
Sbjct: 129 MEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGCQYDEEA 188
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + S+ ++RRAI + +A+ + + VE +K+ IR+ KL +
Sbjct: 189 LETIYEISEGDMRRAINILQAAAA------LGKVTVEAVYKVVGLAHPKEIREIIKLALD 242
Query: 197 EQSPKKLLEVRTRLYELLVH 216
+ + R +L EL+++
Sbjct: 243 ----GRFTDARKKLRELMIN 258
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ + R IL N SQ+I I+SRC R T + + + + I +EG+ + +
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIREIATEEGIEVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALIYAADGDMRKAINGLQAAAV 220
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L++L H + + +KE PHLLFYGP G GK + I+A+ K+LY P
Sbjct: 12 WVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSPK 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T +AQ ALRR
Sbjct: 72 EFNSMVLELNASDDRGIGIVRGPVLSFASTRTIFKSGFKIVILDEADAMTNDAQNALRRV 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPAI+SRC R ++++V L ++ ++E + + +
Sbjct: 132 IEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVIQQERVDVTEDG 191
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L ++ ++R+++ + +++ +
Sbjct: 192 MNALVTLANGDMRKSLNILQSTSM 215
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHLLF GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ + R IL N SQ+I I+SRC R T + + + + I +EG+ + +
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQIREIATEEGIEVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALIYAADGDMRKAINGLQAAAV 220
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N++ + + LR LK GDFP+LLFYGP G GK + I+A ++L+G
Sbjct: 34 WVEKYRPKNVKDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGSL 93
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 94 YKERVLELNASDERGIQVVREKIKSFAQLTAGGIRDDGKSCPPFKIIILDEADSMTGAAQ 153
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I + SRC R +I+ L ICK+E L
Sbjct: 154 AALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDL 213
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
+ L++ + S +LRRAI
Sbjct: 214 KVEKPVLLKIVEVSGGDLRRAI 235
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ + + D PHLLF GP+G GK T +A+ KE+YG
Sbjct: 13 IWIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGD 72
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT EAQ ALRRTM
Sbjct: 73 DWRENFLELNASDQRGIDVVRDRIKSFARASFGGYDHRVIFLDEADALTSEAQSALRRTM 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R I + I + EG+ I +
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGIEITDDGM 192
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + ++R+AI +A+ V
Sbjct: 193 DALVYAAAGDMRKAINGLQAAAV 215
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L+N +++ D PHLLF GP+G GK T ++ +E+Y
Sbjct: 18 VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I E + + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINALQAAAV 220
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 40/216 (18%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W++KYRP +L + H LR +++ D PHL+F GP+G GK A+ +ELYG
Sbjct: 16 GIWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG 75
Query: 62 P--------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 76 EDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVEYRIIFLDEADALTSDAQSALRRT 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME++ R IL N SQ+I I+SRC R + E I + I + EG+++ +
Sbjct: 136 MEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L + ++R+AI +A+ V ++D++ V
Sbjct: 196 VDALVYAAAGDMRKAINGLQAAAVMGE--EVDEEAV 229
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP +L + + L++ +++ D PHLLF GP+G GK T A+ +++YG
Sbjct: 17 IWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + + I EG+ + E
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEGIEVTDEGV 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 42/203 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQA--NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+W++KYRP +L D H ++A L++ +++ D PHLLF GP+G GK T A+ +++Y
Sbjct: 17 IWIEKYRPQSLD--DIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVY 74
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G ++ L+E D LT EAQ ALRR
Sbjct: 75 GDDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDEAQAALRR 134
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME++ R IL N S++I I+SRC R + + + I EG+ + E
Sbjct: 135 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDE 194
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 195 GVDALVYAADGDMRRAINSLQAA 217
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 153/328 (46%), Gaps = 74/328 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G G+ + I+A K+LY
Sbjct: 16 WVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQLYKEK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GPV +IL+E DH+T++AQ ALRR
Sbjct: 76 EFTSMVLELNASDDRGIDVVRGPVLSFASTRTIFKRGFKLVILDEADHMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY RL L N +S++IPA++SRC R + ++++ L + ++E + I P
Sbjct: 136 IEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVVQQESIDINPGG 195
Query: 144 ALRLAQQSDRNLRRAILMCEAS-----KVQQ--------YPFQIDQQIVEPDWKIYIRDT 190
+ S ++RR++ + +++ KV + +P + D + DW + T
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANIL-DWSLNKDFT 254
Query: 191 A--KLIISEQSPKKLL--EVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEM 246
+ K I+ ++ K L ++ T ++ LL+H + + GLL I++
Sbjct: 255 SAYKEILQLKTLKGLALNDILTEVH-LLIHRVDFPPAIRI---GLL-----------IKL 299
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFMAM 274
A + EHR+ G+ + + VA+F A+
Sbjct: 300 ADI-EHRLASGTNEKIQLSSMVAAFQAV 326
>gi|118576898|ref|YP_876641.1| replication factor C small subunit [Cenarchaeum symbiosum A]
gi|118195419|gb|ABK78337.1| replication factor C small subunit [Cenarchaeum symbiosum A]
Length = 311
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 138/313 (44%), Gaps = 45/313 (14%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+WV+KYRP L + + + LLK G+ PHLLF G +G GK T + + +++ G
Sbjct: 1 MWVEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLG 60
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
P +IIL+E D +T +AQ ALRR
Sbjct: 61 PHIQDNLLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTADAQTALRR 120
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
T+E CR I+ AN++S++I I+SRC + + +E ++ L I K E +I E
Sbjct: 121 TIEDASKICRFIIVANNISKIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKGEKASIDEE 180
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ +QS+ +LR AI + +A+ + + V + I+
Sbjct: 181 GLKEVYEQSEGDLRHAINILQAAASSG---AVTAESVRTSAGQARKGDVDGILKRALAGD 237
Query: 203 LLEVRTRLYELL-VHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPI 261
L R R+ EL+ V+ + + KY+ + + D + + A +++RI G+ P
Sbjct: 238 LSGARERMVELIKVYGMSESDFLKYVSAAVFRSGAGD-PGAILRIIAEYDYRILSGANPE 296
Query: 262 FHIEAYVASFMAM 274
+ A +A ++
Sbjct: 297 IQLSAMLAELGSL 309
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN+L L H + N ++ +K+ PHLLFYGP G GK + I+A+ K+LY P
Sbjct: 12 WVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPK 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T +AQ ALRR
Sbjct: 72 EFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADAMTNDAQNALRRV 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R N +S++IPA++SRC R +++IV L + ++E + + +
Sbjct: 132 IEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVVREENVDMTEDG 191
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++RR I + +++ +
Sbjct: 192 KKALITLAKGDMRRVINILQSTSM 215
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 91/202 (45%), Gaps = 44/202 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L DFPHLLFYGP G GK + I+A+ ++++GP
Sbjct: 25 WVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPHLLFYGPPGTGKTSTILAIARQMFGPE 84
Query: 63 -------------------------------------------VIILNETDHLTREAQQA 79
+IIL+E D +T +AQ A
Sbjct: 85 LMKTRILELNASDERGISVVREKVKTLHQSLRLKWGYPCPPFKIIILDEADSMTADAQSA 144
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI 139
LRR ME Y T R L N +S++I + SRC R + LT I KEGL I
Sbjct: 145 LRRMMETYSKTTRFCLICNYVSRIIEPLASRCAKFRFKPLDAGILTEKLTAIGDKEGLQI 204
Query: 140 PPEFALRLAQQSDRNLRRAILM 161
+L S ++RRAI +
Sbjct: 205 DASAINQLTAASGGDMRRAITL 226
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP +L ++ L+ ++E + PH+LF GP G GK T +AL +LYG
Sbjct: 8 LWAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYGE 67
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++IL+E D++T +AQQALRR
Sbjct: 68 KYRQYILELNASDERGIDVIRTKVKEFARSRTPPTVPFKLVILDEADNMTADAQQALRRL 127
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y TT R IL AN S++I ++SRC+ R ++++ L IC+KEG+ +
Sbjct: 128 MEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGVQCEEDA 187
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S+ ++R+AI + +A+
Sbjct: 188 LEEIYNISEGDMRKAINILQAA 209
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L+ + H L++ + D PHLLF GP+G GK +++ KELYG
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD 70
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 71 DWQDNFLELNASDERGIDVVRDRIKDFARSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + L I + EGL +
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGI 190
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++RRAI +A+
Sbjct: 191 DALVYAADGDMRRAINALQAASA 213
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ ++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQAIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I + EG+ + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAENEGIEVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINGLQAAAV 220
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L+N +++ D PHLLF GP+G GK T ++ +E+Y
Sbjct: 48 VWIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDD 107
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 108 DWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 167
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I E + + +
Sbjct: 168 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDGV 227
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 228 DALVYAADGDMRKAINALQAAAV 250
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 47/310 (15%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
W +KYRP + ++ + + LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 62 -------------------------------PV-------IILNETDHLTREAQQALRRT 83
PV +IL+E D++T +AQQALRR
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R P P H + L I K EG+ + +
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRH-LMAERLKYIAKSEGVEVKED 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPK 201
+ + S+ ++R+AI + + + +D+ +V IR T + + +
Sbjct: 184 AIDLIYELSEGDMRKAINILQVAAATNKI--VDRNVVAAA-AAAIRPTDIVELFNLALSG 240
Query: 202 KLLEVRTRLYELL-VHSIP-VNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK 259
L+ R ++ EL+ V + V+ + + E + + D + K++ E+ A ++R+ +G+
Sbjct: 241 DYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGAD 300
Query: 260 PIFHIEAYVA 269
+ ++A
Sbjct: 301 EEIQLSYFLA 310
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 38/204 (18%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W++KYRP +L + H LR +++ D PHL+F GP+G GK A+ +ELYG
Sbjct: 16 GIWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYG 75
Query: 62 P--------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 76 EDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVKYRIIFLDEADALTSDAQSALRRT 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME++ R IL N SQ+I I+SRC R + E I + I + EG+++ +
Sbjct: 136 MEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++R+AI +A+ V
Sbjct: 196 VDALVYAAAGDMRKAINGLQAAAV 219
>gi|167042652|gb|ABZ07373.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_ANIW133M9]
gi|167043915|gb|ABZ08603.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_APKG3H9]
gi|167044610|gb|ABZ09283.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine crenarchaeote HF4000_APKG7F11]
Length = 318
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 48/310 (15%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-EGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+WV+KYRP + +L + + ++LK + + PHLLF G +G GK + + + +E+ G
Sbjct: 7 MWVEKYRPQKISELINQKEIVGSINSMLKNQSELPHLLFSGSAGVGKTSAALCVSREILG 66
Query: 62 P----------------------------------------VIILNETDHLTREAQQALR 81
+IIL+E D +T +AQ ALR
Sbjct: 67 KHWRDYTLELNASDERGINMVRERVKKFSRFAGLDTEIPFKIIILDEADEMTADAQTALR 126
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R E CR IL AN++S++I I+SRC+ + + +EI+S L +I KKE +
Sbjct: 127 RITEDTAKICRFILIANNLSKIIKPIQSRCVVFKFTKISDKEILSQLKSIGKKEKIKADE 186
Query: 142 EFALRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
+ + +D +LR AI ++ A+ + + +V ++D KL +
Sbjct: 187 KGLSAICDYTDGDLRHAINILQAAASSGNVTESVVKSVVGLTKTNDVQDVLKLAL----D 242
Query: 201 KKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK 259
K+ + R ++ EL+ V+ + + KY+ + + + ++L+ +E A +++RI G+
Sbjct: 243 GKISDARDKMIELIKVYGMSESDFLKYINQAVFNSKANNLEGM-LETIAKYDYRILVGAN 301
Query: 260 PIFHIEAYVA 269
P + A +A
Sbjct: 302 PEIQLSALLA 311
>gi|449451671|ref|XP_004143585.1| PREDICTED: uncharacterized protein LOC101218071 [Cucumis sativus]
Length = 713
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L + D T + Q LR M+ Y C+++LC S ++ ++ SRC I+I P
Sbjct: 500 VVVLLDVDKATEDIQHLLRWIMDGYKDACKVVLCCEDDSGILESVISRCKVIKINPPVTH 559
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP- 181
EI+ VL I +KE +P FA ++A ++ +NLR+AI+ EA K YPF DQ I P
Sbjct: 560 EIMDVLIKIAEKEEFDLPMNFASKIATKAKQNLRKAIMALEACKAHNYPFSDDQPI--PI 617
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
W+ + + A I+ + S +L +V+ ++ +LLV S+ ++ + L+E L + +
Sbjct: 618 GWEDALVELASHILEDPSNPRLHQVKEKIQKLLVDSVHPKLILQKLVEQFLKRIEMRSRR 677
Query: 242 KSIEMAAMFEHR--IHKGSKPIFHIEAYVASFMAM 274
+ A + R I G + +E +VA FM++
Sbjct: 678 ELYYWHAYYNKRLPIETGVGALPKLEEFVAKFMSI 712
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W D++RP +L FH +A L+ L+ + FPH+LF GP G+GK+ +MALL+E+YG
Sbjct: 377 FWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPRGSGKRVLMMALLREIYG 435
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 139/317 (43%), Gaps = 54/317 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + + N L+ + E P+L+F GP+G GK T +AL+K + G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEY 64
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
+I L+E D++T++AQ ALRR ME
Sbjct: 65 WRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRREME 124
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
Y T IL N S++I I+SRC R EEI + L IC EG
Sbjct: 125 MYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSEGFEYTDGGIE 184
Query: 146 RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV-EPDWKIYIRDTAKLIISEQSPKKLL 204
+ ++ ++R+A+ + +A+ + Q+D+ V E K +D LI S +
Sbjct: 185 AIEYFAEGDMRKAVNVLQAAASEGK--QVDEDAVYEVVSKAKPQDVHNLITKALS-GDFM 241
Query: 205 EVRTRLYELLV-----HSIPVNVLF----KYLLEGLLANCDSDLKSKSIEMAAMFEHRIH 255
R L E +V V+ ++ K + EG + ++D+ IE A + RI
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKM---EADIYIDLIEAIADCDFRIR 298
Query: 256 KGSKPIFHIEAYVASFM 272
+G+ P +EA + F+
Sbjct: 299 EGANPRIQLEALLTQFL 315
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L+N +++ D PHLLF GP+G GK T ++ +E+Y
Sbjct: 18 VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I E + + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQVREIAATEDIAVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINALQAAAV 220
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK T ++ +E+Y
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGTGKTTAAQSIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + I + + I + EG+T+ +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQIREIAEIEGITVTDDGI 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINALQAAAV 220
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP +L + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 6 LWAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYGE 65
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++L+E D++T +AQQALRRT
Sbjct: 66 NYRQYFLELNASDERGIDVIRNKVKDFARTVTPQDVPFKTVLLDEADNMTADAQQALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL N +S++I I+SR R E+++S L I K E + P+
Sbjct: 126 MELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVEYDPKA 185
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + + ++R+AI + +AS
Sbjct: 186 LDTIYEITSGDMRKAINILQAS 207
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 123/284 (43%), Gaps = 55/284 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN ++ L + + A L N L G+ PH LFYGP G GK + +A KEL+ P
Sbjct: 11 WVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAALAFCKELFPPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 IYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEGFPCPPFKIIILDEADAITPDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTME++ R L N +++VI + SRC R + + V L I +EG
Sbjct: 131 QTALRRTMEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQVDRLRYIVDQEG 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE------PDWKIYIRDT 190
+ + + L + +LRRAI+ E++ I +I+ PD I D+
Sbjct: 191 IMVSDDILQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVTWRVPDHVISQIDS 250
Query: 191 A--KLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
K+ S ++ + E+R E + + PV+ + L E L+
Sbjct: 251 NCLKICSSGENTLQFSELRNMAIEFINNGYPVSEIIYQLCEALI 294
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 39/204 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP NL ++ LR+ + PHLLF G +G GK T +AL +E++G
Sbjct: 7 IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++ L+E D LT++AQ ALRRT
Sbjct: 67 TWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQAALRRT 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y TCR IL N S++I I+SRC R T E I + I KKEG+TI
Sbjct: 127 MENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGA 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ + S ++R+AI + + +
Sbjct: 187 YVAITYVSLGDMRKAINALQGAAI 210
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 43/207 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ + +R ++ G PHLLFYGP G GK + I+AL +E+YGP
Sbjct: 11 WVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPN 70
Query: 63 ------------------------------------------VIILNETDHLTREAQQAL 80
+IIL+E D +T AQ +L
Sbjct: 71 YKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNSL 130
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR +EKY CR + AN ++ PA+ SRC R I S + N+ KE + I
Sbjct: 131 RRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSRIDNVIIKEKVNIT 190
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKV 167
P+ L Q S ++RR++ + +A K
Sbjct: 191 PDALNALLQLSQGDMRRSLNVLQACKA 217
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 39/196 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
W +KYRP + ++ + + LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 62 -------------------------------PV-------IILNETDHLTREAQQALRRT 83
PV +IL+E D++T +AQQALRR
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y R IL AN +S +I I+SR + IR E ++S L I + EG+ I +
Sbjct: 125 MEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDDA 184
Query: 144 ALRLAQQSDRNLRRAI 159
+ + + ++R+AI
Sbjct: 185 LETIYEFTQGDMRKAI 200
>gi|429963225|gb|ELA42769.1| hypothetical protein VICG_00084 [Vittaforma corneae ATCC 50505]
Length = 351
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 144/282 (51%), Gaps = 30/282 (10%)
Query: 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTR--IMALLKE---------LYGP------VI 64
+A L+ ++ + ++ + PS G K R + +++KE L+G ++
Sbjct: 72 EAGSLKVMVDYLECNEMVEFCPSEYGYKDRYVVQSIIKEIARCRPILGLFGAKRRSVKIL 131
Query: 65 ILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEI 124
++++ + L+++AQ ALRRTME Y ++I+ S++I IRSRC+ +RI ++E+
Sbjct: 132 VIDQAEDLSKDAQAALRRTMEMYSGHFKIIMVCTETSKLIEPIRSRCMMVRIRGFRNDEM 191
Query: 125 VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE--------ASKVQQYPFQIDQ 176
+ +NI K EG + + + + S N +RA+ + E K +Q + D
Sbjct: 192 FRICSNIAKIEGFGVDKDAIDSICKNSKGNGKRALCLFELYCFNHLLDDKKRQ---KTDY 248
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+ +W++ I P+ ++E+R LY LL IP +++ +L+ L C
Sbjct: 249 SQIRLEWELKTASIVDKIKRSPRPETMIEIRKDLYSLLNSLIPPSIILAQMLKELSMKCS 308
Query: 237 SDL-KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
++ KS SI A +E RI G+KP++H+EA+ AS M + Q
Sbjct: 309 LEVCKSLSI-FALGYEERIRLGTKPLYHLEAFAASAMLVLSQ 349
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LW++KY+P + ++ H + + L E P+++F+G G K+T + AL+ LYG
Sbjct: 2 LWIEKYKPKSFSEITTHKEVVSMLDKYTLE-TIPNMIFHGQIGHNKRTILYALISHLYG 59
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 42/314 (13%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +K+RPN L ++ + L ++E PH+LF GP G GK T +AL K+LY
Sbjct: 2 IDVWTEKHRPNTLSEVVGQNEITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLY 61
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G +I L+E D LT +AQQALRR
Sbjct: 62 GDEWKQNFMETNASEERGIDVVREKIKDFARTKAINAEYKIIFLDEADSLTSDAQQALRR 121
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME++ CR I+ N S++I I+SRC R ++ S + + + E +I +
Sbjct: 122 TMEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESENFSISED 181
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ + SD +LRR + + + + + ++ + + ++ + I+ + +
Sbjct: 182 AVEAVMRVSDGDLRRVTNVLQTAAISTDEIE-EEDVYSVSASLKPKEITE-ILEKTISNQ 239
Query: 203 LLEVRTRLYELLVHS--IPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP 260
++ R +L +L++ +V+ E + K + IE FE RI +G+
Sbjct: 240 FIDARDQLSDLMIERGLDGQDVVSSIHREVYNLDISDQQKLELIEALGEFEFRITEGASA 299
Query: 261 IFHIEAYVASFMAM 274
IEA +A ++
Sbjct: 300 DVQIEALLAKIASL 313
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 47/220 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N++ ++ L L D PH+LFYGP G GK + I+AL +EL+GP
Sbjct: 32 WVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPGTGKTSTILALARELFGPE 91
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T++AQ
Sbjct: 92 LMKSRVLELNASDERGISVVRDKIKSFAKVSISPATNAYPCPPFKIIILDEADSMTQDAQ 151
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRR ME Y R L N ++++I I SRC R + + +S L IC+ E +
Sbjct: 152 SALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLSSTDTLSRLNEICRLENV 211
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCE-ASKVQQYPFQIDQ 176
+ L + SD +LRR+I + ASK++ D+
Sbjct: 212 KVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSADDE 251
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 48/314 (15%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ L+ +KEG+ P+L+F GP+G GK T +AL KE+ G
Sbjct: 31 WVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLGEY 90
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
+I L+E D++T++AQ ALRR ME
Sbjct: 91 WRQNFLELNASDARGIDTVRNDIKSFCRLKAVGSPFRIIFLDEVDNMTKDAQHALRREME 150
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIR-IPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
Y T IL N S++I I+SRC R +P H +I+ L I + EGL I
Sbjct: 151 MYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGH-QIIKRLEYIAQAEGLKIDIAAI 209
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
+ ++ ++RRA+ + +AS ++ + E K +D K I+++ +
Sbjct: 210 ESIVYFAEGDMRRAVNILQASSSAGEEV-TEESVDEVVSKAKPKDVKK-IVNKALDGDFI 267
Query: 205 EVRTRLYELLV------HSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
R L +++V + + + L + + D+ +E ++RI +GS
Sbjct: 268 GARELLRDVMVVQGTSGEDMVTQIYQEVSKMALDGSLNEDIYINLVESIGETDYRIREGS 327
Query: 259 KPIFHIEAYVASFM 272
P +EA + F+
Sbjct: 328 NPRIQLEALLTKFL 341
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGE 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + NI +EG+ + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 195 DALVYAADGDMRKAINGLQAASV 217
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + ++A K+LY
Sbjct: 16 WVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLASAKQLYKEK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +TR+AQ ALRR
Sbjct: 76 EFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTRDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R L N +S++IPA++SRC R + ++++ L + ++E + + P+
Sbjct: 136 IEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRLEFVIQQESIDVTPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ S ++RR++ + +++ +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSM 219
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 47/218 (21%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR +K GD PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + R E + + L I + EG+ I +
Sbjct: 124 IMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGVKISDD 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
+ + + ++RRAI Q +D+++ E
Sbjct: 184 ALETIYEFTQGDMRRAI------NALQIAASVDKEVTE 215
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 40/215 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L+ + H L++ + D PHLLF GP+G GK +++ KE+YG
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGD 70
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 71 DWQENFLELNASDQRGIDVVRDRIKNFARASFGGYDYRVIFLDEADALTDDAQSALRRTM 130
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + L +I +E L
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDLEYTEAGI 190
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L +D ++RRAI +A+ +D+++V
Sbjct: 191 DALVYAADGDMRRAINALQAASATGDA--VDEEVV 223
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A K+LY
Sbjct: 16 WVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILACAKQLYKDK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +TR+AQ ALRR
Sbjct: 76 EFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTRDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R L N +S++IPA++SRC R + ++++ L ++ ++E + + P+
Sbjct: 136 IEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRLEHVIQQESIDVTPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ S ++RR++ + +++ +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSM 219
>gi|440492768|gb|ELQ75308.1| Replication factor C, subunit RFC3 [Trachipleistophora hominis]
Length = 353
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 117/218 (53%), Gaps = 6/218 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+I++ + + +T++AQ ALRRT+E Y+ R+I+ N + +I I+SR LC+R+ + +
Sbjct: 132 LIVITKAEKMTKDAQAALRRTVETYVDNFRMIMICNDTTGIIDPIKSRMLCLRVTVASSD 191
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE----ASKVQQYPFQIDQQI 178
++ L+ I E + + ++ S N RRA+ + S ++ ++ +Q
Sbjct: 192 VLLKTLSEINDVECIGSDEKTLKQIISDSHGNFRRALFFLQRMQLNSTGEEKTKRLKKQE 251
Query: 179 VE--PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
E +W+ + D K+++ EQS ++ +R+ L ELL+ IP ++ K L E L++
Sbjct: 252 GEFKLEWETVVTDMVKMMVKEQSNTVVMNIRSHLNELLIKCIPPRLILKALFETLMSTVK 311
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
+ A ++ RI G+K IFH+EAYV + M +
Sbjct: 312 QTEYHNLCTLTAKYDCRITLGTKSIFHLEAYVIAVMLL 349
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
KY+P L + F+ K A++L+N PHL+ +G G GK+T + A + L+G
Sbjct: 6 KYQPKTLDDIQFNRKHASNLKNFTL-STIPHLIVHGRPGCGKRTLVYAFINHLFG 59
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 61/323 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP +L + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 6 LWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 65
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
VI+L+E D++T +AQQALRRT
Sbjct: 66 SYEQFFLELNASDERGIDVIRNKVKEFARTMVSSSVPFKVILLDEADNMTADAQQALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL N +S++I I+SR R E++VS L I K+E + +
Sbjct: 126 MELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEYDEKA 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + ++R+AI +A+ + +E +K+ +RD KL +S
Sbjct: 186 LETIYDVTMGDMRKAINTLQAASA------YGKVTIETVFKVLGLAQPKEVRDMLKLALS 239
Query: 197 EQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLAN---CDSDLKSKSIEMAAMFEH 252
K +E R +L LLV + + + K L L +N +L+ ++ E
Sbjct: 240 ----GKFMEAREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEF 295
Query: 253 RIHKGSKPIFHIEAYVASFMAMY 275
RI +G+ + A +A +A+Y
Sbjct: 296 RIIEGADDEIQLSALLAK-IAIY 317
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 39/205 (19%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W +KYRP L + + L++ +K G PHLLF GP+G GK T +AL +E +G
Sbjct: 6 TIWTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 ENWQVNFRELNASDERGIDVVRNQIKQFARTAPMGGAEFKILFLDEADALTNDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E + L I K EGL+I +
Sbjct: 126 TMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGLSITED 185
Query: 143 FALRLAQQSDRNLRRAILMCEASKV 167
+ + ++R+AI + +
Sbjct: 186 AMSAIIYVAQGDMRKAINALQGGAI 210
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ + R IL N SQ+I I+SRC R T + + + I +EG+ + +
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQVREIAAEEGIEVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVFAADGDMRKAINGLQAAAV 220
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L+N +++ D PHLLF GP+G GK T ++ +E+Y
Sbjct: 18 VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + I + + I E + + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQVREIAATEDIAVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINALQAAAV 220
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A K+LY
Sbjct: 17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDR 76
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 77 EFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 136
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + E +V L ++ K+E + I P+
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECVDISPDG 196
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S+ ++RR++ + +++ +
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNM 220
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 90/203 (44%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L+ + + D PHLLF GP+G GK T A+ KE+YG
Sbjct: 13 IWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGD 72
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 73 DWRENFLELNASDQRGIDVVRDRIKSFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + I EG+ + +
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGV 192
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 193 DALVYAADGDMRKAINGLQAAAV 215
>gi|255586016|ref|XP_002533677.1| Replication factor C subunit, putative [Ricinus communis]
gi|223526428|gb|EEF28707.1| Replication factor C subunit, putative [Ricinus communis]
Length = 661
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
IIL D L+ +A ++ +E+Y + + C + +S+ + AI+ C +++ P+++
Sbjct: 428 AIILYNADRLSADAVLYIKWLLERYQGSSKFFFCCSDVSK-LQAIKELCNLVQLFMPSND 486
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EIV VL I K+EG+ +P +FA R+A +S NLR+AI EAS + YPF DQ+I+
Sbjct: 487 EIVKVLKFIAKQEGIELPFQFAERIALESKNNLRQAIRSLEASWRRSYPFAEDQEIL-TG 545
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
W+ I + AK +I EQSPK+L +R +L +L+ H + +F LL+ L + D
Sbjct: 546 WEDDIANIAKNMIQEQSPKQLYIIRGKLQKLIEHDVSPEFIFNTLLDELKKHLD 599
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 4 WVDKYRPNNLQKLDFHCKQ--ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W DKYRP L+ F C Q A ++ L+K + H +F G G GK+T I A+++E YG
Sbjct: 298 WADKYRPKTLEA--FICNQSTAAKVQGLIKGIECNHFIFEGSPGVGKRTMIRAMIQEAYG 355
Query: 62 PVIILNETDHLTREAQQALR 81
P + TRE +A R
Sbjct: 356 PETV------QTREESKAFR 369
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 53/317 (16%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L ++ L++ +K G+ PHLLF G +G GK T +AL +E +G
Sbjct: 6 TIWIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 DSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E ++ I EGLT+
Sbjct: 126 TMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEG 185
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISE 197
+ + ++R+AI + + + + ID++ + I TA+ ++
Sbjct: 186 ALDAIVYVASGDMRKAINALQGAAILRT--DIDEETI-----FEITATARPEEIDELLDL 238
Query: 198 QSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIH 255
+ E L EL V I N L L+ + D LK K I+ + R+
Sbjct: 239 SIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLS 298
Query: 256 KGSKPIFHIEAYVASFM 272
+G+ +EA +A F+
Sbjct: 299 EGASSDIQMEALLARFV 315
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 112/264 (42%), Gaps = 75/264 (28%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + + L N L+ G PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+I+L+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + IC +
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEIMSSRILYICNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI 194
EGL + E L+ S +LRRAI Y++ +A+L
Sbjct: 190 EGLHLDAEGLSTLSSISQGDLRRAI-------------------------TYLQSSARLF 224
Query: 195 ISEQSPKKLLEVRTRLYELLVHSI 218
S S K L+ V + E +V +I
Sbjct: 225 GSHISSKDLISVSGVVPENVVEAI 248
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 43/197 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP +L L H +R +KE PH+LFYGP G GK + I+A +E++G
Sbjct: 17 WVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFGET 76
Query: 62 -----------------------------------------PVIILNETDHLTREAQQAL 80
+IIL+E D +T +AQ AL
Sbjct: 77 SNSSVLELNASDDRGIDVARGRILNFASTKRIAIQAGTASFKLIILDEADAMTNDAQNAL 136
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR +EK+ R L N +S++IPA++SRC R E+I+ L + K+E L +
Sbjct: 137 RRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKEESLEMS 196
Query: 141 PEFALRLAQQSDRNLRR 157
P+ A L + ++RR
Sbjct: 197 PDGAKALLTLAKGDMRR 213
>gi|237833397|ref|XP_002365996.1| replication factor C, putative [Toxoplasma gondii ME49]
gi|211963660|gb|EEA98855.1| replication factor C, putative [Toxoplasma gondii ME49]
gi|221488458|gb|EEE26672.1| replication factor C, putative [Toxoplasma gondii GT1]
gi|221508964|gb|EEE34533.1| replication factor C, putative [Toxoplasma gondii VEG]
Length = 396
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 113/250 (45%), Gaps = 42/250 (16%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+ I + D L+ AQ ALRRT+E Y + + + + + ++SRC C+R+P P+H
Sbjct: 137 ICIFQDADLLSESAQHALRRTLEIYSSRLKFVFLVERLERFSAPLKSRCFCVRVPLPSHR 196
Query: 123 EIVSVLTNICKKEGLTIPPEFA-----LRLAQQSDRNLRRAILMCE--------ASKVQQ 169
+ S L ++C KEGL PP+ A ++++S RNLRRA L E AS
Sbjct: 197 AVASFLRSLCDKEGL--PPQVAPDALLQTISEKSARNLRRAGLALECLATHNFTASLSPS 254
Query: 170 YPFQIDQQIVEP---DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKY 226
+ + P W+ + A +QSP+ L E R LY+LL IP ++
Sbjct: 255 TALSLPRGEASPFPLPWERLCDEIAVCAFRQQSPRALSECRGMLYDLLSVLIPGELVLGR 314
Query: 227 LLEGLLA------------------------NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
LL LLA D + + AA F H + KGSK I
Sbjct: 315 LLTTLLALVREKQPKPRAAGASAETPGSSRQAAGHDPATVLVHAAAHFSHTLKKGSKEII 374
Query: 263 HIEAYVASFM 272
H+EA++A M
Sbjct: 375 HLEAFLAQAM 384
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWVDK+ P +++L H + + L PHLLFYGP+G GKKTR++AL++ ++G
Sbjct: 2 LWVDKHAPREIEELSIHPEISRLLLKQAASASLPHLLFYGPTGGGKKTRVLALVRRIFGD 61
Query: 63 VI 64
+
Sbjct: 62 AV 63
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 141/324 (43%), Gaps = 67/324 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L++ K G PHLLF GP G GK + +AL +EL+G
Sbjct: 18 WVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFGEN 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRRTM
Sbjct: 78 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + R IL N S++I I+SRC R E+I + I ++EGL + E
Sbjct: 138 EMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAEQEGLELTEEGL 197
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
+ ++ +LRRAI + +A+ +D++I D ++ L+ S P+ +
Sbjct: 198 QAILYVAEGDLRRAINVLQAAAA------LDKKIT--DENVF------LVASRARPEDVR 243
Query: 205 EVRTRLYE---LLVHSIPVNVLFKYLLEG--LLANCDSDL------KSKSIEMA---AMF 250
E+ T E L ++L K L G +L ++ + K + +A +
Sbjct: 244 EMMTLALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKIGEY 303
Query: 251 EHRIHKGSKPIFHIEAYVASFMAM 274
R+ +G+ + +EA +A F M
Sbjct: 304 NFRLVEGANEMIQLEALLAQFTIM 327
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 62/312 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M WV+++RP+++ ++ L + ++ G+ PHLLFYGP G GK + I+AL K+LY
Sbjct: 1 MVPWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLY 60
Query: 61 GP-----------------------------------------------VIILNETDHLT 73
GP ++IL+E D +T
Sbjct: 61 GPELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSSYPCPPFKLVILDEADCMT 120
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME R + N +S++I I SRC R + E ++ L I
Sbjct: 121 TDAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIAD 180
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL 193
KEG +P + L S +LRRAI M + + + Q I+E I D+ L
Sbjct: 181 KEGFQLPSDVTDALVNISGGDLRRAITMMQNTYILHGNSMKGQDIIEN--AATIPDSVIL 238
Query: 194 -IISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE----GLLANCDSDLKSKSIEMAA 248
+++ ++++++ +++ P N + +++ G+ A KSKSI A
Sbjct: 239 DLVNSCKYNSFEKIQSKVNDIIADGYPANQIHDWVMSKEAFGISA------KSKSIICKA 292
Query: 249 M--FEHRIHKGS 258
+ + R+ GS
Sbjct: 293 LGTTDMRLTDGS 304
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 149/328 (45%), Gaps = 73/328 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L +L H + + L L+ E PHLLFYGP G GK + I+A + LY
Sbjct: 17 WVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYTSK 76
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+IIL+E D +T++AQ
Sbjct: 77 QLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLIILDEADAMTKDAQS 136
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
ALRR +EK+ R + N +S++IPAI+SRC +R ++E+I+ L +I + E LT
Sbjct: 137 ALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVQVETLT 196
Query: 139 IPPEFALRLAQQSDRNLRRAILMCEASKVQ-------------QYPFQIDQQIVEPDWKI 185
+ + L ++ ++RR I + +++ + YP D VE KI
Sbjct: 197 VTEDGQKALLNLAEGDMRRVINILQSTAMAFKTVDEPNVYRCVGYPLPTD---VEKIVKI 253
Query: 186 YIRDTAKLIISEQSPKKLLEVRT-RLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSI 244
+ D+ E + K+ E+RT R + L S +N + +++ ++ +L S+ +
Sbjct: 254 LLNDSI-----EDAYTKIEEIRTERAFAL---SDILNSMHEFIFRLVVP---PELLSRLL 302
Query: 245 EMAAMFEHRIHKGSKPIFHIEAYVASFM 272
A E+ + +G + A + +F+
Sbjct: 303 ICMADIEYHLSQGCSDRLQLGALIGAFI 330
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL L H + N +++ LKE PHLLFYGP G GK + I+A K ++ P
Sbjct: 7 WVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSPA 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T++AQ ALRR
Sbjct: 67 EIKSMVLELNASDDRGIDVVRGPIQSFASTRSIFRSGFKLIILDEADAMTKDAQNALRRV 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+E Y R L N +S++IPA++SRC R + E++ L +I ++E + I
Sbjct: 127 IETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIREENINITDSG 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ + + ++RR++ + +++ +
Sbjct: 187 MDSVVKLAQGDMRRSLNILQSTSM 210
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N++ + + LR LK GDFP+LLFYGP G GK + I+A ++L+G
Sbjct: 7 WVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGSL 66
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+I+L+E D +T AQ
Sbjct: 67 YKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPPFKIIVLDEADSMTGAAQ 126
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I + SRC R +I+ L ICK+E L
Sbjct: 127 AALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDL 186
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
+ L++ + S +LRRAI
Sbjct: 187 KVEKPVLLKIVEVSGGDLRRAI 208
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + +++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKA-RLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + IR E ++S L I + EG+ + +
Sbjct: 124 IMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGVKVSDD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + + ++R+AI
Sbjct: 184 ALEAIYEFTQGDMRKAI 200
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 98/218 (44%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ N L+ LK D PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 25 WVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 85 LTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPFKIIILDEADSMT 144
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y + R L N ++++I + SRC R + + L + K
Sbjct: 145 ADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDESNAMDRLQYVAK 204
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + ++ S +LR+AI L+ +SK++ Y
Sbjct: 205 QESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNY 242
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A K+LY
Sbjct: 17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDR 76
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 77 EFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 136
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + + ++ L ++ K+E + I P+
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEERVDISPDG 196
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S+ ++RR++ + +++ +
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNM 220
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTME Y R N +S++I + SRC R + E + S + +IC +EG
Sbjct: 131 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEG 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L + + L+ S +LRRAI +++
Sbjct: 191 LNLDAQALSTLSAISQGDLRRAITYLQSA 219
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 137/312 (43%), Gaps = 43/312 (13%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L ++ L++ ++ G+ PHLLF G +G GK T +AL +EL+G
Sbjct: 8 TIWIEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFG 67
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
V+ L+E D LT +AQ ALRR
Sbjct: 68 DSWQMNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKVLFLDEADALTTDAQAALRR 127
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E ++ +T I EGLT+
Sbjct: 128 TMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIEGLTVTEG 187
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ + ++R+AI + + + + P +ID++++ D ++ +
Sbjct: 188 ALDAIVYVASGDMRKAINALQGAAILR-P-EIDEEMIYEITATARPDEIDELLDLSMEGR 245
Query: 203 LLEVRTRLYELL-VHSIPVNVLFKYLLEGLL-ANCDSDLKSKSIEMAAMFEHRIHKGSKP 260
E L EL+ I N L L+ + LK + I+ + R+ +G+
Sbjct: 246 FDEAEQALSELIRGRGIAPNELINQCYRSLVRRDLPRPLKVRLIDALGETDFRLSEGASS 305
Query: 261 IFHIEAYVASFM 272
+EA +A F+
Sbjct: 306 DIQMEALLAKFV 317
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 45/207 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L +L H + + L L+ E PHLLFYGP G GK + I+A + LY P
Sbjct: 17 WVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYTPK 76
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
++IL+E D +T++AQ
Sbjct: 77 QLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLVILDEADAMTKDAQS 136
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
ALRR +EK+ R + N +S++IPAI+SRC +R ++E+I+ L +I + E LT
Sbjct: 137 ALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVRVESLT 196
Query: 139 IPPEFALRLAQQSDRNLRRAILMCEAS 165
+ + L ++ ++RR I + +++
Sbjct: 197 VTEDGQKALLNLAEGDMRRVINILQST 223
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 17 IWIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + ++ I E + + E
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTDEGI 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + L++ +K G PHLLF GP G GK T +AL +EL+G
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRRTM
Sbjct: 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + + R IL N S++I I+SRC R E+I L I + EGL + E
Sbjct: 135 EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 194
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
+ ++ ++RRAI + +A+
Sbjct: 195 QAILYIAEGDMRRAINILQAA 215
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W++KYRP L + N +R L EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 10 WIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYGSN 69
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 70 YRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 129
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R + + I + N+ KE L + P+
Sbjct: 130 ERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQAH 189
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S ++RRA+ + +A++
Sbjct: 190 AALLRLSSGDMRRALNVLQAARA 212
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPE 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQY 244
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPE 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQY 244
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L +L FH + ++ + E PHLL YGP G GK + I+A ++LY
Sbjct: 11 WVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYRER 70
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 71 EFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 130
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++EG+ + +
Sbjct: 131 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDG 190
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 191 MKALVTLSSGDMRRALNILQSTSM 214
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 94/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + +IC +
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLPEEIMSNRILHICNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGLT+ E L+ S +LRRAI
Sbjct: 190 EGLTLDTEALSTLSSVSQGDLRRAI 214
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 130/324 (40%), Gaps = 72/324 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + NI +E + + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V I S P+
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDT--VDESAV------------YAITSTARPE--- 237
Query: 205 EVRTRLYELLVHSIPVN--VLFKYLLEGLLANCD---------------SDLKSKSIEMA 247
E+RT + L + L + L E +A D D + +E
Sbjct: 238 EIRTMVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIGDDAAVRVLERI 297
Query: 248 AMFEHRIHKGSKPIFHIEAYVASF 271
++RI +G+ +EA +AS
Sbjct: 298 GETDYRITRGANERVQLEAMLASL 321
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 39/207 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP+ L + H + + L KE PHLL YGP G GK + I+A+ KELYGP
Sbjct: 1 MWVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGP 60
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T++AQ ALRR
Sbjct: 61 AFAQMTLELNASDDRGIDVVRNEIQSFASTMRFNATGFKLIILDECDSMTKDAQFALRRV 120
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R L N +S++IPA++SRC R E + + ++ EG+ I E
Sbjct: 121 IEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEGVEITEEG 180
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQY 170
+ ++RR + + +A +
Sbjct: 181 LAAVQTLGAGDMRRTLNILQARSYSHW 207
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + PHLLF GP G GK +A+ KEL+G
Sbjct: 5 IWIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGD 64
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 65 AWHQNFTELNASDERGIDVVRTKIKDFSKTSPIGGADFKIIFLDEADALTPDAQSALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y CR IL N S++I I+SRC R + ++E + + I ++EGL I +
Sbjct: 125 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEGLQISEDG 184
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S ++R+AI +AS
Sbjct: 185 VEAIKYVSQGDMRKAINALQAS 206
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+N +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 24 VWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDD 83
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 84 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 143
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T I + + I + + + +
Sbjct: 144 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIAADQDIEVTDDGV 203
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 204 DALVYAADGDMRKAINALQAAAV 226
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 78/330 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYRDK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + +++V L ++ ++E + + P+
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVPRLEHVIQQESIDVTPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEAS-----KVQQ--------YPFQIDQQIVEPDWKIYIRD- 189
+ S ++RR++ + +++ KV + +P + D + DW + +D
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSDIANIL-DWALN-KDF 253
Query: 190 -TAKLIISEQSPKKLLEVRTRLYE--LLVHSI--PVNVLFKYLLEGLLANCDSDLKSKSI 244
TA I E K L + L E LL+H + P N+ GLL I
Sbjct: 254 TTAYRQILELKTLKGLALHDILTEVHLLIHRVDFPPNIRI-----GLL-----------I 297
Query: 245 EMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
++A + EHR+ G+ + + VA+F A+
Sbjct: 298 KLADV-EHRLASGTDEKIQLSSMVAAFQAV 326
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 143/320 (44%), Gaps = 56/320 (17%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W +KYRP L + + L+ +++ P+LLF GP+G GK T +AL +E+ G
Sbjct: 3 GIWTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILG 62
Query: 62 P--------------------------------------VIILNETDHLTREAQQALRRT 83
++ L+E D++TR+AQQALRR
Sbjct: 63 EYWQQNFLELNASDARGIDTVRTEIKNFCRLRPINAPFRIVFLDEVDNMTRDAQQALRRE 122
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T IL N S++I ++SRC+ R ++I+ L IC+KE + +
Sbjct: 123 MEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKENVDYEEKA 182
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW-----KIYIRDTAKLIISEQ 198
+ ++ +LR+AI + +A+ +D+ I E D K D K+I+
Sbjct: 183 LDAIVYFAEGDLRKAINILQAAAA------LDKTITEDDIYDVVSKARPEDVRKMIVKAL 236
Query: 199 SPKKLLEVRTRLYELLV-HSIPVNVLFKYLLE-----GLLANCDSDLKSKSIEMAAMFEH 252
+ + L+ R L E+++ + + L + + D + K +++ ++
Sbjct: 237 NG-EFLKAREMLREIMISYGVSGEDLIDQIYREFSRLAIDGEVDEETYVKFVDVIGEYDF 295
Query: 253 RIHKGSKPIFHIEAYVASFM 272
RI +G+ P +E+ +AS +
Sbjct: 296 RIREGANPRIQLESLLASLL 315
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 126/288 (43%), Gaps = 47/288 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 97
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAA 157
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L ++ +KE
Sbjct: 158 QGALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKEN 217
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
+ I E L + SD +LR+AI +++ +I ++ V + R+T ++S
Sbjct: 218 VKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLS 277
Query: 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSI 244
S ++ T L+ V L L + ++ + D K KSI
Sbjct: 278 ACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSI 325
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 145/318 (45%), Gaps = 56/318 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQAN---HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
WV+KYRP QKLD Q + L+ ++E P+L+F GP+G GK T +AL +E+
Sbjct: 5 WVEKYRP---QKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREIL 61
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G +I L+E D++T++AQ ALRR
Sbjct: 62 GEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRR 121
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y T IL N S++I I+SRC R I+S L I ++EGL P+
Sbjct: 122 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEGLEYEPQ 181
Query: 143 FALRLAQQSDRNLRRA--ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
+ ++ +LR+A IL AS ++ + I E + +D K+I++
Sbjct: 182 ALDTVVYFAEGDLRKAINILQSAASLGEKI---TESSIYEVVSRARPKDVRKMIMTILD- 237
Query: 201 KKLLEVRTRLYELLV-HSIP----VNVLFKYLLE-GLLANCDSDLKSKSIEMAAMFEHRI 254
K +E R L E++V I V +++ L + + + + K IE ++ RI
Sbjct: 238 GKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLIEAVGEYDFRI 297
Query: 255 HKGSKPIFHIEAYVASFM 272
+G+ P +EA +A F+
Sbjct: 298 REGANPRIQLEALLARFL 315
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ ++ + P+L+F GP+G GK T + + +E+YG
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYGD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T + I + + I EG+ + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIEVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINGLQAAAV 220
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ + + N L L+ + PHLLFYGP G GK + +A+ ++LYGP
Sbjct: 6 WVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPE 65
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T++AQ
Sbjct: 66 LMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEADSMTQDAQ 125
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME Y R + N +S++I + SRC R + + +IC++E +
Sbjct: 126 NALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERESV 185
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
T+ P L+ S +LRRAI
Sbjct: 186 TLGPGALDTLSAVSGGDLRRAI 207
>gi|443404662|ref|YP_007379001.1| replication factor C small subunit [Halovirus HVTV-1]
gi|441462173|gb|AGC34465.1| replication factor C small subunit [Halovirus HVTV-1]
Length = 327
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 133/325 (40%), Gaps = 58/325 (17%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+WV+KYRP L + H + +R L D PH++F G G GK I A KE YG
Sbjct: 7 IWVEKYRPQTLDDIVGHEEVVKRMRKFLDTEDVPHVVFAGKQGIGKTAIIQAFAKEKYGV 66
Query: 62 ---------------------------------------PVIILNETDHLTREAQQALRR 82
++ L+E D LT++AQ ALRR
Sbjct: 67 DNWRNNILELNASDERGIDTIRDKVKNYAVQGTIGDHQYKIVFLDEADQLTKDAQTALRR 126
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME + R L N +SQ+I I+SRC I T +++ + N+ ++EG+ I +
Sbjct: 127 IMEDHADVTRFFLSCNYLSQIIGPIQSRCAPFSISPLTDDDLFQIGKNVAEEEGIAIEDD 186
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ +D + R+ I +A+ Y +ID V + T + EQ
Sbjct: 187 TLTLMVNAADGDARKLINSMQAAV---YEGEIDANGVN-----VVVSTVDDALVEQIVNT 238
Query: 203 LLE------VRTRLYELLVHSIPVNVLFKYLLEGLLANCD--SDLKSKSIEMAAMFEHRI 254
+E +R E+L +P N L L ++ D D+K+K ++ A R
Sbjct: 239 AVEGDLDDAMRQLDVEVLKEGVPANQLCDSFLR-VIKKQDLPGDVKAKMLDKVAETNWRA 297
Query: 255 HKGSKPIFHIEAYVASF-MAMYLQF 278
+G+ P + +A +A YL
Sbjct: 298 MRGANPHVQFHSLLADLHVARYLSL 322
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ + + N L L+ + PHLLFYGP G GK + +A+ ++LYGP
Sbjct: 6 WVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPE 65
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T++AQ
Sbjct: 66 LMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEADSMTQDAQ 125
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME Y R + N +S++I + SRC R + + +IC++E +
Sbjct: 126 NALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERESV 185
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
T+ P L+ S +LRRAI
Sbjct: 186 TLGPGALDTLSAVSGGDLRRAI 207
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 91/204 (44%), Gaps = 48/204 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ G PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+I+L+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRTME Y R N +S++I + SRC R T E + S + ICK+E
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEE 190
Query: 136 GLTIPPEFALRLAQQSDRNLRRAI 159
G+ + E L+ S +LRRAI
Sbjct: 191 GIYLDAEGLSTLSNISQGDLRRAI 214
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L +++ + +R + EG PHLLFYGP G GK + I AL KE+YG
Sbjct: 12 WVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYGSN 71
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ +LRR +
Sbjct: 72 YRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKGFKLIILDEADAMTSTAQNSLRRII 131
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + E + + + + KE L I E
Sbjct: 132 EKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEQLKISSEAI 191
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
L + ++R+A+ + +A K Q D ++ D
Sbjct: 192 ESLCALARGDMRKALNVLQACKAS---LQDDNDEIDTD 226
>gi|85000801|ref|XP_955119.1| replication factor [Theileria annulata strain Ankara]
gi|65303265|emb|CAI75643.1| replication factor, putative [Theileria annulata]
Length = 299
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 57/248 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W++KYRP+ L+++ + + L+ + KEG+ P+LL GP G GK T ++ L +E+
Sbjct: 5 IDIWIEKYRPSTLEEIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAREML 64
Query: 61 GP----------------------------------------VIILNETDHLTREAQQAL 80
G ++IL+E D +T AQQAL
Sbjct: 65 GSHFKSAVVELNASDDRGVDVVRENIKNFAKKSLILPANKHKIVILDEVDSMTEPAQQAL 124
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y +T R L N +++I I+SRC IR E+I+ L IC E LT
Sbjct: 125 RRIMEIYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLKDEQILKRLVTICDLENLTYT 184
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
E L +D +LRRA+ + QIV +KI +D + SP
Sbjct: 185 DEGMEALLFSADGDLRRAV--------------NNLQIVSAGFKIVTKDNVFKVCDIPSP 230
Query: 201 ---KKLLE 205
+K+LE
Sbjct: 231 DLIQKMLE 238
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 95/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV++YRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPE 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y + R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDRLRYISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDAGVLERILDISAGDLRRGITLLQSASKRAQY 244
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQY 244
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 42/203 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQA--NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+W++KYRP +L D H ++A L++ + + D PHLLF GP+G GK T A+ +E+Y
Sbjct: 17 IWIEKYRPQSLG--DIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVY 74
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G ++ L+E D LT +AQ ALRR
Sbjct: 75 GEDNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDDAQSALRR 134
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME++ R IL N S++I I+SRC R + + I EG+ +
Sbjct: 135 TMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAGQTREIAAAEGIEVTDA 194
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 195 GVDALVYAADGDMRRAINSLQAA 217
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQY 244
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQY 244
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 53/313 (16%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L ++ + L+ ++ + PHLLF GP G GK +AL ++L+G
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y +CR IL N +S++I I+SRC R E + L IC+KEG+ I +
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQ 198
L S + R+AI + + ++V+ D I TA+ +I
Sbjct: 186 LEALIYISGGDFRKAINALQGAAAI-------GEVVDADTIYQITATARPEEMTELIQTA 238
Query: 199 SPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDSD-LKSKSIEMAAMFEHRIHK 256
+E R L L+V + + + L +++ D LK + I+ + R+ +
Sbjct: 239 LKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTE 298
Query: 257 GSKPIFHIEAYVA 269
G+ ++AY+A
Sbjct: 299 GANERIQLDAYLA 311
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A L +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPKSFAEIVDLEEIKA-RLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG 63
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
+++L+E D++T +AQQALRR
Sbjct: 64 ERWRENTLELNASDERGINVIRERVKEFARTAPAGGAPFKLVVLDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y T R +L AN +S +I I+SRC R + +V+ L I ++EGL + +
Sbjct: 124 IMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGLKVTQD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + ++RRAI
Sbjct: 184 ALEAIFDFTQGDMRRAI 200
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L ++ + + L+ +KE + PHLLF GP G GK T L +L+G
Sbjct: 12 LWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQALRRL 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL AN S++I I+SRC R E+++S L I ++E + I E
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEA 191
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S+ ++RRAI + +A+
Sbjct: 192 LEAIHDLSEGDMRRAINILQAA 213
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + IR E + + L I + EG+ + +
Sbjct: 124 IMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + + ++RRAI
Sbjct: 184 ALEAIYEFTQGDMRRAI 200
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W +KYRP L ++ H + +R LL E PHLLFYGP G GK + I+A+ +E+YG
Sbjct: 10 WSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYGSS 69
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T++AQ ALRR M
Sbjct: 70 LGNMTLELNASDDRGIAVVRNEIQDFASTRTIFSNKFKLIILDECDAMTKDAQFALRRVM 129
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R L N +S++IPA++SRC R E + L IC++E + +
Sbjct: 130 EKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQESIKVTQGGL 189
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RR + + +++
Sbjct: 190 EALIELGCGDMRRTLNLLQST 210
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 135/318 (42%), Gaps = 58/318 (18%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++WV+KYRP L + H L++ ++ D P+LLF G +G GK T +A+ KELYG
Sbjct: 14 TIWVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYG 73
Query: 62 P--------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 74 DSWQSHFLELNASDERGIDVVRDQIKNFARHDPGAVDFQIIFLDEADSLTSDAQAALRRT 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME++ R I+ N S++I I+SRC R + + + + +EG+ +
Sbjct: 134 MEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGIETTDDG 193
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA-----KLIISEQ 198
L +D ++R+AI +A+ V Q+D++ V I TA K ++
Sbjct: 194 IEALVYAADGDMRKAINALQAAAVMGE--QVDEESV-----FVITSTARPEDIKEMVRHA 246
Query: 199 SPKKLLEVRTRLYELLVH-----SIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHR 253
R+ L ELL ++ L + + E + D D + +E + R
Sbjct: 247 IDGDFTRSRSILDELLTERGMAGGDIIDQLHRSIWE---FDLDDDDAVRVLERVGEADFR 303
Query: 254 IHKGSKPIFHIEAYVASF 271
I +G+ +EA +AS
Sbjct: 304 ITEGANERVQLEAMLASL 321
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYED 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ + R IL N SQ+I I+SRC R T + I + + I +EG+ + +
Sbjct: 138 EQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIATEEGIELTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+ I +A+ V
Sbjct: 198 DALVYAADGDMRKGINGLQAAAV 220
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 145/335 (43%), Gaps = 78/335 (23%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L ++ + L+ ++E + PHLLF GP G GK T L +LYG
Sbjct: 15 LWAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGD 74
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I+L+E D++T +AQQALRR
Sbjct: 75 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAGEVPFKIILLDEADNMTADAQQALRRL 134
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL AN S++I I+SRC R + E++V L I +KE + E
Sbjct: 135 MELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENVKYNTEA 194
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + S+ ++R+AI + +A+ + + VE +K+ +R +L +S
Sbjct: 195 LETIHELSEGDMRKAINILQAASA------LGEVTVEAVYKVVGLAHPKEVRQMLQLALS 248
Query: 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL---------LANCDSDLKSKS---- 243
E R++L EL+++ Y L GL + + D L ++
Sbjct: 249 ----GNFTEARSKLRELMLN---------YGLSGLDIIRQIHREIFSSDIKLSDEARIMI 295
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
+ A + R+ +G+ + A++A M +F
Sbjct: 296 ADYAGEIQFRLVEGADDEIQLNAFLARLAFMGKKF 330
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 47/315 (14%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L ++ L + ++E PHLLF GP G GK T +AL +E++G
Sbjct: 4 IWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGE 63
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT AQ ALRRT
Sbjct: 64 HWQHNLHELNASDERGIDVVRGKIKEFARTAPIGGGGFKIIFLDEADALTSAAQAALRRT 123
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEKY TCR +L N S++I I+SRC R E++ L I +E L + +
Sbjct: 124 MEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDA 183
Query: 144 ALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
LA + +LRRAI L A+ + ++ Q V +R+ +L +
Sbjct: 184 YEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQ----G 239
Query: 202 KLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSK 259
R RL L++ + + + + + + + K + IE A + R+ +G+
Sbjct: 240 NFAGARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGAT 299
Query: 260 PIFHIEAYVASFMAM 274
IEA +A F+ +
Sbjct: 300 ARIQIEAAIAHFIVV 314
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EE++S + +IC +
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSNRILHICNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL++ E L+ S +LRRAI
Sbjct: 190 EGLSLGGEALSTLSSISQGDLRRAI 214
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 49/210 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L L+ D PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKE 135
Q ALRRTME Y R N +S++I + SRC R P EE++S + +IC +E
Sbjct: 131 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEVMSNRILHICNEE 189
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
GL++ + L+ S+ +LRRAI +++
Sbjct: 190 GLSLDAQALATLSTISNGDLRRAITYLQSA 219
>gi|71027617|ref|XP_763452.1| replication factor C subunit 4 [Theileria parva strain Muguga]
gi|68350405|gb|EAN31169.1| replication factor C subunit 4, putative [Theileria parva]
Length = 324
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 109/248 (43%), Gaps = 57/248 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W++KYRP L + + + L+ + KEG+ P+LL GP G GK T ++ L +EL
Sbjct: 5 IDIWIEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLARELL 64
Query: 61 GP----------------------------------------VIILNETDHLTREAQQAL 80
G ++IL+E D +T AQQAL
Sbjct: 65 GTHFKSAVIELNASDDRGVDVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEPAQQAL 124
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y +T R L N +++I I+SRC IR E+I+ L IC E LT
Sbjct: 125 RRIMELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICDMENLTYT 184
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
E L +D +LRRA+ + QIV +K+ +D + SP
Sbjct: 185 DEGMEALLFSADGDLRRAV--------------NNLQIVSAGFKVVTKDNVFKVCDIPSP 230
Query: 201 ---KKLLE 205
+K+LE
Sbjct: 231 DLIQKMLE 238
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 52/314 (16%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L + + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 13 IWIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGD 72
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 73 DWRGNFLELNASDERGIDVVRDRIKNFARASFGGHDYRIIFLDEADSLTSDAQSALRRTM 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + + I +EG+ + E
Sbjct: 133 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGIEMTDEGL 192
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQS 199
L +D ++RRAI +A+ +V+ + I TA+ +++
Sbjct: 193 DALVYAADGDMRRAINSLQAAATT-------GGVVDEEAVYLITSTARPEEIESMVTAAI 245
Query: 200 PKKLLEVRTRLYELLVHS-IPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKG 257
+ R++L LL + + + L G D + +E ++RI +G
Sbjct: 246 EGDFAQARSKLDTLLTDTGMAGGDIIDQLHRGAWDFGLDQRETVRLMERIGEADYRITEG 305
Query: 258 SKPIFHIEAYVASF 271
+ +EA +AS
Sbjct: 306 ANEQVQLEAMLASL 319
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + ++ I E + + E
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTDEGI 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 43/205 (20%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62
V+KYRP NL+++ N +R ++ G PHLLFYGP G GK + I+AL +E+YGP
Sbjct: 55 VEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPNY 114
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+IIL+E D +T AQ +LR
Sbjct: 115 KNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSASSPQFKLIILDEADAMTSVAQNSLR 174
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EK+ CR + AN ++ PA+ SRC R E I S + N+ KE + I P
Sbjct: 175 RIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVDITP 234
Query: 142 EFALRLAQQSDRNLRRAILMCEASK 166
+ L S ++RR++ + +A K
Sbjct: 235 DALNALLHLSQGDMRRSLNVLQACK 259
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EE++S + +IC +
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSNRILHICNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL++ E L+ S +LRRAI
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAI 214
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EE++S + +IC +
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEVMSNRILHICNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL++ E L+ S +LRRAI
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAI 214
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 41/217 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L +++ + +R + EG PHLLFYGP G GK + I+AL KE+YG
Sbjct: 12 WVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYGSN 71
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ +LRR +
Sbjct: 72 YRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKGFKLIILDEADAMTSTAQNSLRRII 131
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + E + + + + KE L I +
Sbjct: 132 EKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEKLKISSDAI 191
Query: 145 LRLAQQSDRNLRRAILMCEASK--VQQYPFQIDQQIV 179
L + ++R+A+ + +A K +Q +ID ++
Sbjct: 192 ESLCTLARGDMRKALNVLQACKASLQDDNDEIDTNMI 228
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + NI +E + + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D + + +E ++RI +G+
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 312
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 313 QLEAMLASL 321
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + + E PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPA 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T++AQ ALRR
Sbjct: 73 QFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADAMTKDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +SQ+IPA++SRC R + ++I+ L I K+E L + +
Sbjct: 133 IEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTIIKEENLNVSEDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++R+ + + +++ +
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTSL 216
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 47/203 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ G+ PHLLFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTME Y R N +S++I + SRC R + + + +ICK+EG
Sbjct: 131 QNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEG 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAI 159
+ + + L+ S+ +LRRAI
Sbjct: 191 VHLDSDALTMLSSISEGDLRRAI 213
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 43/204 (21%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + +++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKA-RLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTIPP 141
ME Y R IL AN +S++I I SRC R P P H + L I + EG+ +
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRH-LMAERLREIARSEGVELKD 182
Query: 142 EFALRLAQQSDRNLRRAILMCEAS 165
+ + + S+ ++R+AI + + +
Sbjct: 183 DAIDLIYEISEGDMRKAINLLQVA 206
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L N +++ D PHLLF GP+G GK T A+ +E+Y
Sbjct: 18 VWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAAQAIAREVYDD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T I + + I E + + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQVREIAANEEIDVTDDGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVFAADGDMRKAINGLQAAAV 220
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L+ + L ++E + PHLLF GP G GK T AL +LYG
Sbjct: 16 LWTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGE 75
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 76 SYQQFMLELNASDERGIDTIREKVKEFARSKTPPEIPFKIVLLDEADNMTSDAQQALRRL 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL AN S++I I+SRC R + E+++ L I KEG+ +
Sbjct: 136 MELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGVDYEEDA 195
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + +AS
Sbjct: 196 LDIIFEISEGDMRKAINILQAS 217
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + + + L+ + +EG+ P+++ GP G GK T I+ L EL GP
Sbjct: 24 WVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELLGPN 83
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 84 FREAVLELNASDDRGIDVVRNKIKMFAQQKVTLPLGRHKIVILDEADSMTSGAQQALRRT 143
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y +T R L N S++I I+SRC +R + +E++ L ++C++EG+ P+
Sbjct: 144 MEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQEEGVAHTPDG 203
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 204 LEAVVFTADGDMRQALNNVQAT 225
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + IR E + + L I EG+ I +
Sbjct: 124 IMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKITDD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + + ++RRAI
Sbjct: 184 ALEAIYEFTQGDMRRAI 200
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + NI +E + + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D + + +E ++RI +G+
Sbjct: 253 ASRATLDRLLTEEGIAGGDVIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 312
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 313 QLEAMLASL 321
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + +R + E PHLLFYGP G GK + I+A KELY P
Sbjct: 9 WVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTPQ 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 69 QFNSMVLELNASDDRGINVVRNQIMSFASTRSIFKSGFKLIILDEADAMTNDAQNALRRV 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N MS++IPAI+SRC R ++I+ + + ++E + + +
Sbjct: 129 IEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEEKIKVTEDG 188
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++RR I + +++ +
Sbjct: 189 RQALLSLAHGDMRRVINILQSTSM 212
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 70/326 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGKTSTILACARQLYKDK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + ++++ L ++ ++E + I P+
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQESIDITPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEAS-----KVQQ--------YPFQIDQQIVEPDWKIYIRDT 190
+ S ++RR++ + +++ KV + +P + D + DW + T
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYEKVTEETAYNCTGHPLRSDIANIL-DWALNKDFT 254
Query: 191 AKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD--SDLKSKSIEMAA 248
K++LE++T L L + I V L+ D D++ + A
Sbjct: 255 TAY-------KQILELKT-LKGLALQDILTEVHL------LIHRVDFPPDIRIGLLIKLA 300
Query: 249 MFEHRIHKGSKPIFHIEAYVASFMAM 274
EHR+ G+ + + VA+F A+
Sbjct: 301 DVEHRLASGTDEKIQLSSMVAAFQAV 326
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + LR L GDFP+LLFYGP G GK + I+A ++L+G
Sbjct: 34 WVEKYRPRTVEDVVEQAEVVEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFGSL 93
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 94 YKERILELNASDERGIQVVRDKIKSFAQLTAGGMRDDGKGCPPFKIIILDEADSMTNAAQ 153
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK T R L N +S++I + SRC R ++IV L ICK+E L
Sbjct: 154 AALRRTMEKESHTTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDL 213
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
L++ + S +LRRAI
Sbjct: 214 KASKPVLLKIVEASGGDLRRAI 235
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 134/310 (43%), Gaps = 69/310 (22%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR +K GD PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R + L I K EG+ + +
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGVELRDD 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ + S+ ++R+AI + Q+V K+ + + P
Sbjct: 184 AIDIIYELSEGDMRKAINLL--------------QVVAATNKVVDSNAVAAAAATIKPSD 229
Query: 203 LLEV------------RTRLYEL--LVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAA 248
++E+ R +L EL L V+ + + E + D D+K++ E+ A
Sbjct: 230 IIELFNLAIGGDVSKAREKLRELMYLKGVAGVDFIRAFQRELIRMALDDDVKAEIAELLA 289
Query: 249 MFEHRIHKGS 258
++R+ +G+
Sbjct: 290 DIDYRLTQGA 299
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 50/310 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN ++ L + + L+ +LK G+ PHLL +GP G GK + I+AL K+L+GP
Sbjct: 29 WVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIALAKQLFGPD 88
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 89 FWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLCPSYKIIILDEADSMTNDA 148
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRR +E Y TT R + N ++++I + SRC+ R + E + L + E
Sbjct: 149 QSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIERLKFVADSES 208
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
+T + +L S +LR+++ M ++S Y I+++ + + + ++S
Sbjct: 209 VTYNLDALKQLVVVSGGDLRKSVNMLQSSST-LYEKSINKKAINEISGFIPDEQIEDLVS 267
Query: 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRI 254
K + V+ ++ + L L+ +LA K+K +E+AA E +
Sbjct: 268 VIQTKSIRSVQEECTRVIQQGYNIEQLILQFLDVVLATDTIKEKQKAKMMEIAAYTEKCL 327
Query: 255 HKGSKPIFHI 264
+GS I
Sbjct: 328 IEGSAEDLQI 337
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 49/210 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKE 135
Q ALRRTME Y R N +S++I + SRC R P EE++S + +IC +E
Sbjct: 131 QNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRF-KPLSEEVMSNRIMHICNEE 189
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
GL + + L+ S +LRRAI +++
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSA 219
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 93/198 (46%), Gaps = 43/198 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +L+G
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGVL 70
Query: 62 ---------------------------------------PVIILNETDHLTREAQQALRR 82
+IIL+E D +T +AQ ALRR
Sbjct: 71 ELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRR 130
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKEGLTIPP 141
TME Y R N +S++I + SRC R P EE++S + +IC +EGL++
Sbjct: 131 TMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK-PLSEEVMSNRILHICNEEGLSLDG 189
Query: 142 EFALRLAQQSDRNLRRAI 159
E L+ S +LRRAI
Sbjct: 190 EALSTLSSISQGDLRRAI 207
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 12 VWIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGD 71
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 72 DWQEHFLELNASDERGIDVVRDRIKSFARTSFGGVDYRIIFLDEADALTSDAQSALRRTM 131
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R I+ N SQ+I I+SRC R E + + + +I +EG+ + +
Sbjct: 132 EQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGIELTDDGV 191
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + ++R+AI +A+ V
Sbjct: 192 DALVYAAGGDMRKAINGLQAASV 214
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EE++S + +IC +
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEVMSNRILHICNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL++ E L+ S +LRRAI
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAI 214
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 47/182 (25%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W++KYRP+ L L H + + ++ L+ G PHLL YGP G GK + ++A+ K+L+G
Sbjct: 13 MWIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLFGN 72
Query: 62 ----------------------------------------------PVIILNETDHLTRE 75
+IIL+E D +T++
Sbjct: 73 RLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQMTKD 132
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRT+EKY R L N ++++IPA++SRC R E+VS L ICK+E
Sbjct: 133 AQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEICKEE 192
Query: 136 GL 137
+
Sbjct: 193 NV 194
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP++L + + +R +++G PHLLFYGP G GK + IMAL KE+YG
Sbjct: 14 WVEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKEIYGKN 73
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 74 YRNMVLELNASDDRGISVVRDQIVNFASTRQIFSNGFKLIILDEADAMTNVAQNALRRVI 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EK+ R + AN ++ PA+ SRC R + E I + ++ K+EG+ I +
Sbjct: 134 EKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINIDDDAL 193
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++R+A+ + +A
Sbjct: 194 QSLLKLSKGDMRKALNVLQA 213
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 45/207 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L ++ H + L L+ E PHLLFYGP G GK + I+A K +Y P
Sbjct: 17 WVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMYAPK 76
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+I+L+E D +T++AQ
Sbjct: 77 QLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMPKLIVLDEADAMTKDAQS 136
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
ALRR +EK+ R + N +S++IPAI+SRC +R +E+I+ L I + E LT
Sbjct: 137 ALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQAESLT 196
Query: 139 IPPEFALRLAQQSDRNLRRAILMCEAS 165
I + L ++ ++RR I + +++
Sbjct: 197 ITKDGQNALLNLAEGDMRRIINILQST 223
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 142/318 (44%), Gaps = 59/318 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN L + H + + +++ PHLLFYGP G GK + I+A+ K++YG
Sbjct: 16 WVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIYGGN 75
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T++AQ ALRR +
Sbjct: 76 WKRNVLELNASDDRGIDVVRDQIKSFAQTRTLFSDGFKLIILDEADLMTQQAQGALRRII 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E Y T R + N ++++ PAI SRC R + + L + + E + I +
Sbjct: 136 EHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENEAVQIDDDAK 195
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV-------EPDWKIYIRDTAKLIISE 197
L + ++RRA+ + +A P +I + V +P+ YI +T L+ E
Sbjct: 196 KALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEAIEYIVNT--LLKDE 253
Query: 198 QSP--KKLLEVRTRLYELLVHSIPVNVLFKYL--LEGLLANCDSDLKSKSIEMAAMFEHR 253
S K+ +V+ R L + I V + Y+ +E A K +E+ A EHR
Sbjct: 254 ISTCYSKIHQVK-RQNGLALQDILTGV-YDYIQTIEFPTAT-----KVAILELLAEVEHR 306
Query: 254 IHKGSKPIFHIEAYVASF 271
+ KGS + A +ASF
Sbjct: 307 LSKGSSETIQLSALIASF 324
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + IR E + + L I EG+ I +
Sbjct: 124 IMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + + ++RRAI
Sbjct: 184 ALEAIYEFTQGDMRRAI 200
>gi|255513870|gb|EET90135.1| Replication factor C [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 316
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 39/193 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W +KYRP +L ++ + L+ +K+G+FP+++F G +G GK T +A+ K+LY
Sbjct: 3 WTEKYRPKSLDEVIGQKQIVERLKAFVKQGNFPNMIFAGSAGVGKTTSAIAMAKDLYDDD 62
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 63 LNTAFKELNASDARGIDVIRGEVKNFAKTISIARVPVKIIFLDEADALTADAQHALRRTM 122
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EK+ R IL AN S++I I+SRC+ R T +++ + I K EG+T+
Sbjct: 123 EKFSAETRFILSANYASKIIEPIQSRCVVFRFKPLTEDDMKEYVNRIVKGEGITLEKNAM 182
Query: 145 LRLAQQSDRNLRR 157
L D +LR+
Sbjct: 183 EALIYVGDGDLRK 195
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 47/203 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKELYGP 62
WV+KYRP + ++ + L+ L++G D PHLLFYGP G GK + I+A ++L+G
Sbjct: 37 WVEKYRPRTVDEVSEQSEIVAVLKQCLEQGADMPHLLFYGPPGTGKTSTIIAAARQLFGD 96
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+++L+E D +T A
Sbjct: 97 MYKNRMLELNASDDRGIQVIRDKVKTFAQLTASDRRPDGKPCPPFKIVVLDEADSMTAPA 156
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRT+E+ T R L N +S +I + SRC R +HE +++ L +ICK+EG
Sbjct: 157 QAALRRTIERETKTTRFCLICNYVSCIIDPLTSRCSKFRFKPLSHEIMLTRLEHICKEEG 216
Query: 137 LTIPPEFALRLAQQSDRNLRRAI 159
+ P RL S ++RRAI
Sbjct: 217 VKCAPRVLARLVDASGGDMRRAI 239
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + + E PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPA 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T++AQ ALRR
Sbjct: 73 QFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADAMTKDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +SQ+IPA++SRC R + ++I+ L I K+E L + +
Sbjct: 133 IEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDAIIKEENLNVSEDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++R+ + + +++ +
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTSL 216
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 39/213 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L+ + LR+ +K + PHLLF GP G GK +++ +EL+G
Sbjct: 5 IWIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGD 64
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 65 DWRENFTELNASDERGIDVVRTKIKNFAKTSPIGGADFKIIFLDEADALTPDAQSALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y CR IL N S++I I+SRC R + + I +I +KEGL I +
Sbjct: 125 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGLDIADDG 184
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ 176
+ ++ ++R+AI +A+ + D
Sbjct: 185 IEAIKYVAEGDMRKAINAVQAASMFDTSIHADS 217
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 125/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + I +E + + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D D + +E ++RI +G+
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERV 312
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 313 QLEAMLASL 321
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 126/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 97 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGE 156
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 157 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 216
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + NI +E + + +
Sbjct: 217 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDGL 276
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 277 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 334
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D + + +E ++RI +G+
Sbjct: 335 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 394
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 395 QLEAMLASL 403
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 39/205 (19%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W +KYRP L+++ +L++ +K+ + PHL+F GP+G GK +A+ +E Y
Sbjct: 5 AIWTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYD 64
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
+I L+E D LT AQ ALRR
Sbjct: 65 DTWAENFTELNASDERGIEVVRNTIKNFARTMPIGDAAFKIIFLDEADALTDAAQSALRR 124
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME+Y TCR IL N S++I I+SRC R + +++ I S I EGLT+ +
Sbjct: 125 TMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGLTLSED 184
Query: 143 FALRLAQQSDRNLRRAILMCEASKV 167
+ S ++RRAI +++ V
Sbjct: 185 ALRAINYVSMGDMRRAINALQSASV 209
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 47/310 (15%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+N++ + PH+LF GP G GK A ++L+GP
Sbjct: 11 WVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDLFGPR 70
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+++L+E+D LT AQ A RR
Sbjct: 71 YIEDGHFIEINASDERGIETIRERVKTYARSVPFGGIGFRLLLLDESDQLTDAAQHAFRR 130
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME++ TTCR IL AN +++I I+SRC +R + + + ++L I E + +
Sbjct: 131 TMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKKIAASENIKLDDS 190
Query: 143 FALRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
+ + S ++R+AI ++ A+ + + ID + + + R ++
Sbjct: 191 AIDAIYEFSLGDMRKAINILQSAASISK---TIDSKTIYDVMGVVSRGEITRMLQLVLDG 247
Query: 202 KLLEVRTRLYELL-VHSI-PVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK 259
K +E R L ELL V P +++ E L K + +++ ++RI +G
Sbjct: 248 KFIEARNLLRELLYVQGYQPTDIVSSIAREIPLLPVSEQDKLRLMDLIGETDYRISEGGT 307
Query: 260 PIFHIEAYVA 269
P ++A++A
Sbjct: 308 PEVQLQAFLA 317
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 125/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 35 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 94
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 95 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 154
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + I +E + + +
Sbjct: 155 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 214
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 215 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 272
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D D + +E ++RI +G+
Sbjct: 273 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERV 332
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 333 QLEAMLASL 341
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 64/321 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 39 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQ 98
Query: 62 ----------------------------------------PVIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 99 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALR 158
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY R L N ++++IPA++SRC R + L ++ + EGL +P
Sbjct: 159 RVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPE 218
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKI--------YIRDTAKL 193
+ + S+ ++R+A+ + +++ + QQI E + I+ +
Sbjct: 219 PGLAAVVRLSNGDMRKALNILQSTHMAS------QQITEEAVHLCTGNPLPKDIQQISYW 272
Query: 194 IISE---QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMF 250
+++E +S K++ E++T+ LV + +F + ++ SD++ + I A
Sbjct: 273 LLNESFAESFKRISEIKTKKGLALVDIVREVTMFVFKIK-----MPSDVRVQLINDMADI 327
Query: 251 EHRIHKGSKPIFHIEAYVASF 271
E+R+ G + + VASF
Sbjct: 328 EYRLSFGCSDKLQLGSLVASF 348
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LWV+KYRP +L ++ + L+ +K + PHLLF GP G GK T +AL +LYG
Sbjct: 5 LWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGE 64
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++IL+E D++T +AQQALRRT
Sbjct: 65 SWRDNTLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVILDEADNMTGDAQQALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME + R IL AN S++I I+SRC R + L I ++EG+T+
Sbjct: 125 MELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGA 184
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ ++S +LR+AI +A+
Sbjct: 185 LEAIWEESQGDLRKAINTLQAA 206
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L+ + + L++ + G+ PHLLF GP+G GK + A+ +E+YG
Sbjct: 15 IWIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWRGNFLELNASDERGIDVVRDRIKSFARSAFGGHDYRIIFLDEADSLTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E I + L I + E + + E
Sbjct: 135 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAIEVTDEGF 194
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L ++ ++RR I +A+
Sbjct: 195 DALVYAANGDMRRGINSLQAA 215
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + S+C R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPNNL+ L H + + + + + PHLLFYGP G GK + I+A ++LY P
Sbjct: 12 WVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYTPA 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 72 QFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRI 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + E+++ L I + E +TI +
Sbjct: 132 IEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEAEAVTITDDG 191
Query: 144 ALRLAQQSDRNLRRAI 159
L + ++R+ +
Sbjct: 192 KKALLTLAKGDMRKVL 207
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 122/274 (44%), Gaps = 58/274 (21%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M +W +KYRP + + + L++ +++ + PHLLF GP G GK T +AL ELY
Sbjct: 1 MEIWTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELY 60
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G ++ L+E D LTR+AQQALR
Sbjct: 61 GDAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVFLDEADALTRDAQQALR 120
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R MEKY + R IL N S++I I+SR + E ++ I K EGL +
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 142 EFAL--RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199
E + L ++ +LR+AI + +A+ + +D ++Y I S
Sbjct: 181 EDEIINALYDIAEGDLRKAINILQAAAMMSKTITVD--------RLY------EIASIAK 226
Query: 200 PKKLLEVRTRLYE---LLVHSIPVNVLFKYLLEG 230
PK++ EV + + L S+ ++++ KY + G
Sbjct: 227 PKEIDEVLNKAMQGNFLEARSMLIDLMLKYGMSG 260
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + +++ L ++ ++E + I P+
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S ++RR++ + +++
Sbjct: 196 MKAIVTLSTGDMRRSLNILQST 217
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
W +KYRP + ++ + + LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 62 -------------------------------PV------IILNETDHLTREAQQALRRTM 84
P+ +IL+E D++T +AQQALRR M
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPIKAPFKLVILDEADNMTSDAQQALRRIM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E Y R IL AN +S++I I SRC R + L I K+EG+ + +
Sbjct: 125 EIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDAL 184
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + + +
Sbjct: 185 DLIYELSEGDMRKAINLLQVA 205
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 46/261 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + + ++ +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGES 74
Query: 63 ------------------------------------------VIILNETDHLTREAQQAL 80
+IIL+E DH+T AQ A+
Sbjct: 75 RSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTSLKLIILDEADHMTYPAQNAM 134
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y R L N ++++ PAI+SRC R E +++ +I K E + +
Sbjct: 135 RRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSENVDLT 194
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLII---SE 197
+ L + ++RR + + + IDQ ++ I + + K I+ ++
Sbjct: 195 KDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHFTK 254
Query: 198 QSPKKLLEVRTRLYELLVHSI 218
+ K+ E T+L +SI
Sbjct: 255 STIKESYEFVTKLQSTKGYSI 275
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 46/204 (22%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+LWV+KYRP N+ + + LR ++ GD P++L YGP G GK + I+A ++++G
Sbjct: 29 TLWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAAGRQIFG 88
Query: 62 P----------------------------------------------VIILNETDHLTRE 75
++IL+E D +T
Sbjct: 89 DMYKNRILELNASDERGINVVRTKIKTFSQLAASSVRPDGRPCPPFKIVILDEADSMTHA 148
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRTMEK + R L N +S++I I SRC R + E++++ L IC++E
Sbjct: 149 AQSALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSLGEEKVIARLQFICEQE 208
Query: 136 GLTIPPEFALRLAQQSDRNLRRAI 159
G+ I P+ + + S +LRRAI
Sbjct: 209 GVQIDPDAYKSIVKISGGDLRRAI 232
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 43/219 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN L + H + + ++ +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGES 74
Query: 62 -----------------------------------------PVIILNETDHLTREAQQAL 80
+IIL+E DH+T AQ A+
Sbjct: 75 RSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTALKLIILDEADHMTYPAQNAM 134
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y R L N ++++ PAI+SRC R E +V+ +I K E + +
Sbjct: 135 RRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVELT 194
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ L ++RR + + + IDQ ++
Sbjct: 195 KDGLDSLIHVGRGDMRRILNCLQVVSLSHKNMTIDQNVI 233
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 108/262 (41%), Gaps = 72/262 (27%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 LYKSRVLELNASDERGINVVRTKIKDFAAVAVGTARKGGYPCPPYKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTME Y R N +S++I + SRC R + + + + + +IC +EG
Sbjct: 131 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHICHEEG 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
LT+ + L+ +LRRAI Y++ A+L S
Sbjct: 191 LTLDAQALSTLSAICQGDLRRAI-------------------------TYLQSAARLFGS 225
Query: 197 EQSPKKLLEVRTRLYELLVHSI 218
S L+ V + E +V S+
Sbjct: 226 SISSTDLISVSGAIPEDIVKSL 247
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + ++ ++EG PHLLFYGP G GK + I+AL K++YG
Sbjct: 11 WVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYGKN 70
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 71 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 130
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R ++ + + N+ E L I P
Sbjct: 131 EKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRISPAAK 190
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + +ASK
Sbjct: 191 EALLELSNGDMRRVLNVLQASKA 213
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E+D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDESDSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + ++ I E + +
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGV 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ L++ + D H +F GP+G GK T A+ +ELYG
Sbjct: 17 VWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYGD 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 77 DWRDNFLELNASDERGIDVVRDRIKNFARTSFGGYEYRIIFLDEADALTSDAQGALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + E + + +I +EG+ +
Sbjct: 137 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFTDDGL 196
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 197 DALVYAADGDMRKAINALQAASV 219
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + +++ L ++ ++E + I P+
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S ++RR++ + +++
Sbjct: 196 MKAIVTLSTGDMRRSLNILQST 217
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 75/336 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP + + + + L+ L DFP+LLFYGP G GK + I+A+ EL+G
Sbjct: 39 WVEKYRPKVVDDVVHQDEVVSVLKKTLTGSDFPNLLFYGPPGTGKTSAILAIAHELFGRD 98
Query: 62 ---------------------------------------------PVIILNETDHLTREA 76
++IL+E D +T+ A
Sbjct: 99 LYKSRILELNASDDRGIQVIRDKVKSFARHSASASRPDGKPCPSFKIVILDEADSMTQAA 158
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T+ R L N +S++I + SRC R + + + L IC++E
Sbjct: 159 QAALRRTMEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAILRTRLEYICREEN 218
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
+ + R+ + SD ++R+AI ++ Y + D+++ E D I + A ++
Sbjct: 219 VKCNEKAIDRIIETSDGDMRKAITFLQSG----YRLKGDEEVTEKD----IMEIAGVV-- 268
Query: 197 EQSPKKLLE-------------VRTRLYELLVHSIPVNVLFKYLLEGLLANCD-SDLKSK 242
P+ L+E + T + + P + L + ++ +C+ +DL+
Sbjct: 269 ---PQSLIEGLLKTCSSNSYDQLETAVKNFVAEGFPAVQIMNQLNDVIITHCELNDLQKS 325
Query: 243 SI-EMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277
+I E A+ + R+ G+ + + M + Q
Sbjct: 326 AICEQMAVVDRRLSDGADEYLQLLDISSFIMTQFCQ 361
>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 336
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 39/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP +L ++ + N +R ++EG PHLLFYGP G GK + I+AL KE+YG
Sbjct: 14 WVEKYRPTSLDEVYGQNEIVNTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAKEIYGKN 73
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ +LRR +
Sbjct: 74 YHNMVLELNASDDRGIDVVRNQVKDFASTRQIFSKGFKLIILDEADAMTNAAQNSLRRII 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R I + N+ KE + I
Sbjct: 134 EKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIGPAAIEQRMNNVIIKENIKIDDAAK 193
Query: 145 LRLAQQSDRNLRRAILMCEASK 166
L + S ++RR + + +ASK
Sbjct: 194 KALLKVSKGDMRRVLNVLQASK 215
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A K+LY
Sbjct: 24 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKDK 83
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T+EAQ ALRR
Sbjct: 84 EFNSMVLELNASDDRGIGIVRGPILSFASTRTIFKKGFKLVILDEADAMTQEAQNALRRV 143
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ + E + + +
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVIESEKVDVSDDG 203
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S+ ++RR++ + +++ +
Sbjct: 204 MKALVTLSNGDMRRSLNILQSTNM 227
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 101/224 (45%), Gaps = 51/224 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPE 94
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 95 LYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAA 154
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R T+E L IC KE
Sbjct: 155 QAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKEN 214
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L E L + S+ +LR+AI + +++ F +++I E
Sbjct: 215 LKYSKEGIDALVKVSEGDLRKAITLLQST----ARFSAEKEITE 254
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L L H + + L + PHLLFYGP G GK + I+A ++LY
Sbjct: 10 WVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYSTT 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T++AQ ALRR
Sbjct: 70 QFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNKGFKLIILDEADAMTKDAQNALRRV 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEK++ R L N ++++IPAI+SRC R T ++I S L I K E L + +
Sbjct: 130 MEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKVEQLNVTEDG 189
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L ++ ++R+A+ + ++S +
Sbjct: 190 LNALVTLANGDMRKALNILQSSSM 213
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 55/217 (25%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + + L+ L+ + PH+LFYGP G GK + I+A+ KELYGP
Sbjct: 21 WVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKELYGPN 80
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 81 LINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILDEADSMT 140
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTMEKY R L N ++++I + SRC R + ++ + L I K
Sbjct: 141 SDAQSALRRTMEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIERLKFISK 200
Query: 134 KEGLT-----IPPEFALRLAQQSDRNLRRAILMCEAS 165
E L I +F L Q ++ +LRR+I + +++
Sbjct: 201 NENLNVENDEINNDFYKNLLQIANGDLRRSITLLQSA 237
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 45/204 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L++L H L+ L+ PHLLFYGP G GK + I+A K+LYG
Sbjct: 65 WVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGAD 124
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T +AQ ALRR +
Sbjct: 125 FKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVI 184
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP--- 141
EKY R + N ++++IPA++SRC R E+I L ++ +E +TI P
Sbjct: 185 EKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGV 244
Query: 142 EFALRLAQQSDRNLRRAILMCEAS 165
E +RL Q ++RR + + +++
Sbjct: 245 EAVMRLGQG---DMRRVLNLLQST 265
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 89/203 (43%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + + +R L EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIYGRN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R E I + N+ E L + E
Sbjct: 135 EKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVHENLKLSDEAK 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L S ++RR + + +ASK
Sbjct: 195 EALITLSQGDMRRVLNVLQASKA 217
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 43/219 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + + ++ +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGES 74
Query: 63 ------------------------------------------VIILNETDHLTREAQQAL 80
+IIL+E DH+T AQ A+
Sbjct: 75 RSSFVLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTTLKLIILDEADHMTYPAQNAM 134
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y R L N ++++ PAI+SRC R E +V+ +I K E + +
Sbjct: 135 RRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVDLT 194
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ L + ++RR + + + IDQ ++
Sbjct: 195 QDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVI 233
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP +L ++ + L++ +++ + PHLLF G G GK + +AL EL+
Sbjct: 2 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELF 61
Query: 61 G---------------------------------------PVIILNETDHLTREAQQALR 81
G ++ L+E D LT EAQ ALR
Sbjct: 62 GESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y T R + N S++IP I+SR + +R E I L I K EG TI
Sbjct: 122 RTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDD 181
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
E + + S ++R+AI + +A
Sbjct: 182 ESMEAMVEVSGGDMRKAINVLQA 204
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP +L ++ + L++ +++ + PHLLF G G GK + +AL EL+
Sbjct: 14 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELF 73
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G ++ L+E D LT EAQ ALR
Sbjct: 74 GESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALR 133
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y T R + N S++IP I+SR + +R E I L I K EG TI
Sbjct: 134 RTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDD 193
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
E + + S ++R+AI + +A
Sbjct: 194 ESMEAMVEVSGGDMRKAINVLQA 216
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYKEK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + ++++ L ++ ++E + I P+
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQENIDITPDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ S ++RR++ + +++ +
Sbjct: 196 MKGIVTLSTGDMRRSLNILQSTSM 219
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPE 94
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 95 LYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAA 154
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R T+E L IC KE
Sbjct: 155 QAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKEN 214
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L E L + S+ +LR+AI + +++
Sbjct: 215 LKYSKEGIDALVKVSEGDLRKAITLLQST 243
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E+D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDESDSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + ++ I E + +
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGV 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 54/317 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + + N L+ + E P+L+F GP+G GK T +AL+K + G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEY 64
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
+I L+E D++T++AQ ALRR ME
Sbjct: 65 WRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRREME 124
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
Y T IL N S++I I+SRC R EEI + L IC E
Sbjct: 125 MYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGIE 184
Query: 146 RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV-EPDWKIYIRDTAKLIISEQSPKKLL 204
+ ++ ++R+A+ + +A+ + Q+D+ V E K +D LI S +
Sbjct: 185 AIEYFAEGDMRKAVNVLQAAASEGK--QVDEDAVYEVVSKAKPQDVHNLITKALS-GDFM 241
Query: 205 EVRTRLYELLV-----HSIPVNVLF----KYLLEGLLANCDSDLKSKSIEMAAMFEHRIH 255
R L E +V V+ ++ K + EG + ++D+ IE A + RI
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKM---EADIYIDLIEAIADCDFRIR 298
Query: 256 KGSKPIFHIEAYVASFM 272
+G+ P +EA + F+
Sbjct: 299 EGANPRIQLEALLTQFL 315
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 39/206 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP +L + + L++ ++ + PHLLF GP G GK +++++EL+G
Sbjct: 50 IWIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGE 109
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
VI L+E D LT +AQ ALRRT
Sbjct: 110 EWRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAEFKVIFLDEADALTNDAQSALRRT 169
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y + CR +L N S++I I+SRC R + + E + + I + EG+ + PE
Sbjct: 170 MERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGVKVTPEG 229
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQ 169
+ + ++R+AI +A+ + +
Sbjct: 230 MRAIVYVARGDMRKAINALQAASLME 255
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 18 IWIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHDYRIIFLDEADSLTNDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + I +I K EG+ + +
Sbjct: 138 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGIELTEDGL 197
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 198 DALVYAAGGDMRRAINSLQAA 218
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRT E Y R N +S++I + SRC R + E + S + +IC +EG
Sbjct: 131 QNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEG 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L + + L+ S +LRRAI +++
Sbjct: 191 LNLNAQAMSTLSVISQGDLRRAITYLQSA 219
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 43/198 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
W +KYRP L ++ + L++ L G P+LLF+GP G+GK T I+AL +EL+G
Sbjct: 18 WSEKYRPKKLDEVKGQEEVIKLLKSSLTSG-LPNLLFFGPPGSGKTTSILALSRELFGNC 76
Query: 62 ----------------------------------------PVIILNETDHLTREAQQALR 81
+IIL+E+D LT +AQ ALR
Sbjct: 77 FKDRVLELNASNERGIDMIRTTLKNYAMQDVSHQDGIPDYKLIILDESDALTPDAQTALR 136
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R ME + R L N +S+++P I SRC+ R A E + LT+IC+KE + P
Sbjct: 137 RMMEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLTSICEKEKFDVTP 196
Query: 142 EFALRLAQQSDRNLRRAI 159
E + + S+ ++R AI
Sbjct: 197 EAIKAVGKLSEGDMRYAI 214
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 72/288 (25%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLL----------KEGDFPHLLFYGPSGAGKKTRIM 53
WV+KYRP L + + L+ LL K PHLLFYGP G GK T +
Sbjct: 12 WVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGKTTTAL 71
Query: 54 ALLKELYG-------------------------------------------------PVI 64
AL +EL+ ++
Sbjct: 72 ALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSIEESVDAQVPGFKIV 131
Query: 65 ILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEI 124
IL+E D +T +AQ ALRRT+E + T R +L N +S+VIP + SRC R A +
Sbjct: 132 ILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAKFRFKALEDGAV 191
Query: 125 VSVLTNICKKEGLT-IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
++ L +I + EG+ +PPE + LA+ + +LRRA+ + ++ Q+++EP+
Sbjct: 192 IARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCADWARSADGSQRVLEPE- 250
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEG 230
++SE + V R Y++ V + PV F+ L G
Sbjct: 251 ----------MVSEAACMVPASVVERFYDICVSRNEPVTACFEVLRGG 288
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 143/326 (43%), Gaps = 76/326 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + +KE PHLLFYGP G GK T I+A+ K++Y P
Sbjct: 14 WVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAPK 73
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T +AQ ALRR
Sbjct: 74 EFNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSGFKLVILDEADAMTNDAQNALRRV 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R + N +S++IPA++SRC R E++ L + ++E LT+ +
Sbjct: 134 IEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVIEQEKLTVSEDG 193
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQ-------------QYPFQID-QQIVEPDWKIYIRD 189
L ++ ++RR++ + ++ + +P + D + IV+ +
Sbjct: 194 MDALVTLANGDMRRSLNILQSCSMAFDEVTEHTVYTCVGHPLRSDIEHIVKWMLNESFTE 253
Query: 190 TAKLIISEQSPKKLL--EVRTRLYELLVHSI--PVNVLFKYLLEGLLANCDSDLKSKSIE 245
K I+ Q+ K L +V T ++ VH I P+NV +LLE +
Sbjct: 254 AYKNILEMQTAKGLALNDVLTEVHH-YVHRIDFPMNVRI-HLLEKM-------------- 297
Query: 246 MAAMFEHRIHKGSKPIFHIEAYVASF 271
A EHR+ G+ + + VA+F
Sbjct: 298 --ADVEHRLASGTSESIQLSSLVAAF 321
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 53/218 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + LR + D PHLLFYGP G GK + I+AL +EL+GP
Sbjct: 25 WVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSRELFGPQ 84
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 85 LMKERVLELNASDERGISVVREKIKTFASTSVSKGVDGYPCPPFKIIILDEADAMTAAAQ 144
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEKY R L N +S++I + SRC R + + +V L +I KE +
Sbjct: 145 SALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIRDKEDV 204
Query: 138 TIPPEFALRLAQQSDRNLRRAIL-------MCEASKVQ 168
E R+ D ++R+AI +C +S V+
Sbjct: 205 QCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSSGVE 242
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ D PH+LFYGP G GK T +A+ +LYGP
Sbjct: 11 WVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRT E Y R N +S++I + SRC R + E + S + +IC +EG
Sbjct: 131 QNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEG 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L + + L+ S +LRRAI +++
Sbjct: 191 LNLNAQAMSTLSVISQGDLRRAITYLQSA 219
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN + + + + L+ + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 15 WVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 74
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V+IL+E D +T AQQALRRT
Sbjct: 75 YKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRT 134
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R T +EI+ L + + E + PE
Sbjct: 135 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEG 194
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 195 LEAIIFTADGDMRQALNNLQAT 216
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 123/260 (47%), Gaps = 52/260 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN ++++ + + L+ +L G+ PHL+ +GP G GK + I+A K+LYGP
Sbjct: 44 WVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGPT 103
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T EA
Sbjct: 104 FYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADSMTTEA 163
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKE 135
Q ALRR +E +T R + N ++++I + SRC+ R P P +I L ICK E
Sbjct: 164 QSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITK-LEEICKTE 222
Query: 136 GLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQYPFQID--QQIVEPDWKIYIRDTAK 192
+ E +L + S+ +LR+++ L+ AS + + +++ ++I ++ + I K
Sbjct: 223 DIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVNYLLCINKLYK 282
Query: 193 LIISEQSPKKLLEVRTRLYE 212
L+I + K V+ LY+
Sbjct: 283 LLIGKDFDKLKEGVKQFLYQ 302
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ K+E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ K+E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L+ + N L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 26 WVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGPA 85
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 86 LMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEADSMT 145
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R +S + + K
Sbjct: 146 ADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQYVAK 205
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+E L ++ S +LRRAI++ +++
Sbjct: 206 EERLQYDEHVLEKILDVSQGDLRRAIMLLQST 237
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 136/327 (41%), Gaps = 69/327 (21%)
Query: 1 MSL-WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSL WV+KYRP+ + H L+ + PH+LFYGP G GK T +A++K+L
Sbjct: 1 MSLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL 60
Query: 60 YGP---------------------------------------VIILNETDHLTREAQQAL 80
G IIL+E+D LT++AQ AL
Sbjct: 61 CGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQNAL 120
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RRT+E++ CR I N + + PAI+SRC +R + + + ++ NI KEG+ I
Sbjct: 121 RRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGMEID 180
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQ---------------QYPFQIDQQIVEPDWKI 185
+ + + S + R I +A + P QID I E
Sbjct: 181 EDAKKSIIEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLSSP 240
Query: 186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG-LLANCDSDLKSKSI 244
Y+ + L++ L ++++ +P L+EG L++ D + + +
Sbjct: 241 YLESFTVV-------DNLIKAGLSLNDIIIRVVP------KLIEGKLISVLDKTARIQCL 287
Query: 245 EMAAMFEHRIHKGSKPIFHIEAYVASF 271
++ E + G A+VA+F
Sbjct: 288 YQLSLIEQALSIGGNERTQTAAFVAAF 314
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 28 VWIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD 87
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 88 DWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 147
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T I + + I + + + +
Sbjct: 148 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDGV 207
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 208 DALVYAADGDMRKAINALQAAAV 230
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP +L + + L++ +++ D PHLLF GP+G GK T A+ +++YG
Sbjct: 17 IWIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGD 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + I EG+ +
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDAGV 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + + S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQY 244
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 39/201 (19%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62
V+KYRP++L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YGP
Sbjct: 26 VEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYGPNY 85
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
+IIL+E D +T AQ +LRR +E
Sbjct: 86 KNMVLELNASDDRGIDVVRNQIKNFASTMQIFSKGFKLIILDEADAMTSVAQNSLRRIIE 145
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
KY R + AN ++ PA+ SRC R I L N+ KE L+I E
Sbjct: 146 KYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVIIKENLSINEEAEK 205
Query: 146 RLAQQSDRNLRRAILMCEASK 166
L + S+ ++RRA+ + +A K
Sbjct: 206 TLLKLSNGDMRRALNVLQAVK 226
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 55/239 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
++ WV+KYRP N+ + + N +R +K GDFP++LFYGP G GK + I A ++++
Sbjct: 31 LTPWVEKYRPKNVDDIVEQTEVVNVIRQAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMF 90
Query: 61 GP----------------------------------------------VIILNETDHLTR 74
G +IIL+E D +T
Sbjct: 91 GSMYKDRILELNASDDRGIQVVREKIKSFALRKANPIGPDGKKCPPFKIIILDEADSMTG 150
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
AQ ALRR MEK + R L N +S++I I SRC R + E+ +S L IC +
Sbjct: 151 AAQTALRRIMEKEAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSISRLEYICNE 210
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEAS----KVQQYPFQIDQQI----VEPDWKI 185
E L ++ + S +LR+A+ MC S K + Y +D + + PD KI
Sbjct: 211 ENLKADRSVLEKIVEASGGDLRQAV-MCLQSITRLKGKNYEITVDDALDVIGLIPDEKI 268
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 41/217 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP++L ++ N +R + EG PHLLFYGP G GK + I+AL KE+YG
Sbjct: 13 WVEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIYGKN 72
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 73 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + + + N+ +E L I E
Sbjct: 133 EKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQEHLNIGQEAK 192
Query: 145 LRLAQQSDRNLRRAILMCEASK--VQQYPFQIDQQIV 179
L + S ++RR + + +ASK V +I ++I+
Sbjct: 193 DALLKVSKGDMRRIMNVLQASKSSVDTADGEITREII 229
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 47/313 (15%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+W +KYRP L ++ + L++ +K G+ PHLLF GP G GK +AL K+++G
Sbjct: 15 DVWTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFG 74
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
+I L+E D LT +AQ ALRR
Sbjct: 75 DTWQNNFTELNASDERGIDVVRNNIKNFARTAPLGDARFKIIFLDEADALTSDAQSALRR 134
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME+Y TCR I+ N S++I I+SRC R ++I ++ I K EG+ I +
Sbjct: 135 TMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIEKGEGIKITKD 194
Query: 143 FALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
+ + ++RRA+ L ++ + + + I + KL ++ Q
Sbjct: 195 GLDAIIYVARGDMRRAVNALQSASTVSKDITAEAVYETTSTARPKEIEEMLKLALNGQ-- 252
Query: 201 KKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGS 258
++ R +L +LL+ + + + + + + + D D+ ++ + R+ +G
Sbjct: 253 --FMDSRNKLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALVDRIGEADFRLTEGG 310
Query: 259 KPIFHIEAYVASF 271
+EA +A F
Sbjct: 311 NERIQVEALLAHF 323
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + LR L GDFP+LLFYGP G GK + I+A ++L+G
Sbjct: 34 WVEKYRPRTVEDVVEQAEVVEVLRQCLTGGDFPNLLFYGPPGTGKTSTILAAARQLFGSL 93
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 94 YKERLLELNASDERGIQVVRDKIKSFAQLTAGGMRDDGKGCPPFKIIILDEADSMTNAAQ 153
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I + SRC R ++IV L ICK+E L
Sbjct: 154 AALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDL 213
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
L++ + S +LRRAI
Sbjct: 214 KATKPVLLKIVEASGGDLRRAI 235
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 97/221 (43%), Gaps = 52/221 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP +L + H + + PHLLFYGP G GK + I+AL + +YG
Sbjct: 45 WVEKYRPVSLSDVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYGHQ 104
Query: 62 ------------------------------------------------PVIILNETDHLT 73
+IIL+E D +T
Sbjct: 105 NMRQMVLELNASDDRGIEVVREHIKTFASTKQIFTAGSSASRAGIAGFKLIILDEADAMT 164
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-IC 132
AQ ALRR MEKY R + AN ++ PA+ SRC R +P HE+ + VL + +
Sbjct: 165 NTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRF-SPLHEQDIRVLVDKVI 223
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
++EG+ I P+ L + S ++RRA+ + +A P Q
Sbjct: 224 EEEGVKIMPDAVDSLVRLSKGDMRRALNVLQACHASSTPLQ 264
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 94/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + +IC++
Sbjct: 131 AQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRF-KPLSEEIMSSRVLHICRE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL + E L+ S +LRRAI
Sbjct: 190 EGLNLDAEALSTLSYVSQGDLRRAI 214
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 116/261 (44%), Gaps = 46/261 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + H + + +R +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGES 74
Query: 62 -----------------------------------------PVIILNETDHLTREAQQAL 80
+IIL+E DH+T AQ A+
Sbjct: 75 RSSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAM 134
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y R L N ++++ PAI+SRC R E +++ +I K E + +
Sbjct: 135 RRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLT 194
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI---ISE 197
L + ++RR + + + ID+ ++ I + K I +++
Sbjct: 195 KNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTK 254
Query: 198 QSPKKLLEVRTRLYELLVHSI 218
+ K+ E+ T+L E +SI
Sbjct: 255 STIKESYEIITKLQEDKGYSI 275
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L +L H + + +KE PHLLFYGP G GK + I+A+ K++Y P
Sbjct: 18 WVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVAKQIYSPK 77
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +TR+AQ ALRR
Sbjct: 78 EFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSGYKIVILDEADAMTRDAQNALRRV 137
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R + N +S++IPA++SRC R +++V L ++ ++E + +
Sbjct: 138 IEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVIQQEQCNVTEDG 197
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L ++ ++R+A+ + +++
Sbjct: 198 MKALVTLANGDMRKALNILQST 219
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 46/208 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N LK G+ PH LFYGP G GK T +A+ KELYGP
Sbjct: 18 WVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKELYGPE 77
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T +AQ
Sbjct: 78 LYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAPGYPSPPYKILILDEADAMTGDAQ 137
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRR ME Y R L N ++++I I SRC R E + + L I ++EGL
Sbjct: 138 SALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIGEQEGL 197
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ + ++ S ++R+AI + +++
Sbjct: 198 EMSDDVFAMCSKHSGGDMRKAITLLQSA 225
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 17 IWIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDEADSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + ++ I E + +
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEEIEVTDAGV 196
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L +D ++RRAI +A+
Sbjct: 197 DALVYAADGDMRRAINSLQAA 217
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP L ++ + + L+ ++E + PHLLF GP G GK T L +L+G
Sbjct: 12 LWAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE 71
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVTANIPFKIVLLDEADNMTADAQQALRRL 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL AN S++I I+SRC R E+++S L I +E + + E
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKVEVDEEA 191
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S+ ++RRAI + +A+
Sbjct: 192 LEAIHDLSEGDMRRAINILQAA 213
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + H L + PH+LFYGP G GK + I+A +YGP
Sbjct: 22 WVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYGPN 81
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+ETD +T AQ ALRR +
Sbjct: 82 FRNQVMELNASDDRGIDVVREQIKSFASTKQIFSSAFKLIILDETDAMTLAAQNALRRVI 141
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + N ++++ PAI+SRC R EI + + +KE TI PE
Sbjct: 142 EKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKENCTISPEGK 201
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++R+A+ + +A
Sbjct: 202 TALLRLSKGDMRKALNILQA 221
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L+++ + L+ + K+G+ PHLL G G GK T ++AL +EL G
Sbjct: 14 WVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALARELLGDS 73
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +QQA+RRT
Sbjct: 74 FKEGVLELNASDERGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTSASQQAMRRT 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +E++S L +IC+KE + +
Sbjct: 134 MELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDICEKEEVLASTDG 193
Query: 144 ALRLAQQSDRNLRRAI 159
L +D ++R+A+
Sbjct: 194 LEALIFTADGDMRQAV 209
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 39/198 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+WV+KYRP L ++ + L+ ++ + PHLLF GP G GK +AL ++L+
Sbjct: 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63
Query: 61 G---------------------------------------PVIILNETDHLTREAQQALR 81
G +I L+E D LT +AQ ALR
Sbjct: 64 GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y +CR IL N +S++I I+SRC R E + L IC+KEG+ I
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 142 EFALRLAQQSDRNLRRAI 159
+ L S + R+AI
Sbjct: 184 DGLEALIYISGGDFRKAI 201
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ G+ PHLLFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPE 70
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
V+IL+E D +T +AQ
Sbjct: 71 LYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGVSGYPCPPFKVLILDEADSMTEDAQ 130
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME Y R N +S++I + SRC R + + + IC++EGL
Sbjct: 131 NALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEGL 190
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
+ E L++ S+ +LRRAI
Sbjct: 191 KLDQEALSTLSRVSEGDLRRAI 212
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 43/218 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN L ++ + + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 13 WVEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTSTIVALAREIYGNN 72
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 73 YSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-- 142
EKY R + AN ++ PA+ SRC R E + + N+ KE + I +
Sbjct: 133 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQRIDNVIVKEKVKISEDAL 192
Query: 143 -FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L+L++ R + I C+A + +ID+++V
Sbjct: 193 NATLKLSKGDMRKVLNVIQACQAGQ-NSNENEIDEELV 229
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ K+E + + +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDVSEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 39/205 (19%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L+ + + LR+ ++ G PHLLF GP+G GK T +AL +E +G
Sbjct: 6 TIWIEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
V+ L+E D LT +AQ ALRR
Sbjct: 66 ETWQMNFRELNASDERGIDVVRNQIKQFARTSPLGGATFKVLFLDEADALTPDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R + + + E +++ +
Sbjct: 126 TMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRVAAAEEISLTDD 185
Query: 143 FALRLAQQSDRNLRRAILMCEASKV 167
+A ++ ++R+A+ + + +
Sbjct: 186 AVHAIAYIAEGDMRKALNALQGAAI 210
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 40/199 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W++KYRP +L ++ + + L+ + KEG+ P+LL GP G GK T ++ L +E+
Sbjct: 5 IDIWIEKYRPGSLDEIIGNPEITKRLQYIAKEGNMPNLLLCGPPGTGKTTSVLCLAREML 64
Query: 61 GP----------------------------------------VIILNETDHLTREAQQAL 80
G ++IL+E D +T AQQAL
Sbjct: 65 GAQFKSGVIELNASDDRGVDVVRESIKNFAKKSLILPPNKHKIVILDEVDSMTEAAQQAL 124
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y T R L N +++I I+SRC IR E+++ L +ICK E L
Sbjct: 125 RRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDEQVLQRLMDICKLEDLKYT 184
Query: 141 PEFALRLAQQSDRNLRRAI 159
+ L +D +LRRA+
Sbjct: 185 NDGMEALLFSADGDLRRAV 203
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + + +R + +G PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGRN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ +E L + PE
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKLSPEAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 30 VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD 89
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 90 DWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 149
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T I + + I + + + +
Sbjct: 150 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDGV 209
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 210 DALVYAADGDMRKAINALQAAAV 232
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 68/305 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L+++ H + +K+ PHLLFYGP G GK + I+A K++YGP
Sbjct: 41 WVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKIYGPK 100
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T AQ ALRR +
Sbjct: 101 FRNQLLELNASDERGIDVVREQIKNFASTKQIFNSGFKLVILDEADAMTLAAQNALRRVI 160
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + N ++++ AI+SRC R + +EI L + K E + I +
Sbjct: 161 EKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEICLKLDYVIKNENINISEKGK 220
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ------------QIVEPDWKIYIRDT-- 190
L + +D ++R+ + + +A Y F ID+ +I+E K D
Sbjct: 221 AELVKLADGDMRKGLNILQACHA-AYDF-IDEDAVYNCVGNPHPEIIELIVKSLFNDEFL 278
Query: 191 --AKLIISEQSPKK--LLEVRTRLYELLVH-SIPVNVLFKYLLEGLLANCDSDLKSKSIE 245
II ++ + LL++ T +YE+L +P+N+ ++Y L S+ S+ I+
Sbjct: 279 ICLNTIIKVKTERGLALLDIITGVYEVLDELELPINLQYRYRL--------SNGASEKIQ 330
Query: 246 MAAMF 250
++AM
Sbjct: 331 LSAMI 335
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 101/230 (43%), Gaps = 53/230 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + N L+ L + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 27 WVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKELFGPE 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y T R L N ++++I + SRC R + + L + +
Sbjct: 147 ADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRLKYVAE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQYPF--QIDQQIVE 180
+EG+ + + S +LRRAI L+ ASK Y ++ +++VE
Sbjct: 207 EEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELVE 256
>gi|300707136|ref|XP_002995789.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01]
gi|239605004|gb|EEQ82118.1| hypothetical protein NCER_101227 [Nosema ceranae BRL01]
Length = 352
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 116/210 (55%), Gaps = 5/210 (2%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+I++ L+ EAQ ALRRT+E Y R+IL + +S++I IRSRC+ +RI +E
Sbjct: 132 VIISAAHDLSHEAQAALRRTIEVYSECFRIILICSQLSKIIEPIRSRCVFVRIRGFKPQE 191
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA-----ILMCEASKVQQYPFQIDQQI 178
I + + NI E + I + ++ + SD N+RRA IL + S+ ++D
Sbjct: 192 IKNHIKNIVTAENININEQNIEQIIKISDGNMRRALGLLEILYLKHSEEVNKRLKLDLNH 251
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD 238
V+ +W++ + + + L+ + ++EVR +LY L+ I + + L + +
Sbjct: 252 VKLEWEVVMDEISALVRRSHKTETIIEVRKKLYVLINSCITAHCILMELYKRFVIKESEI 311
Query: 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYV 268
+ K +++A ++E R+ +G+K I+HIEA++
Sbjct: 312 TRMKIVDLALIYEERLRQGTKGIYHIEAFI 341
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW++KY+P + + H + + L+ + PHL+F+G SG+GKK L+K L+G
Sbjct: 2 LWLEKYKPRDFNSMTDHTEIISILQKY-NIHNIPHLIFHGKSGSGKKLIAYNLIKHLFGQ 60
Query: 63 VIILN 67
+ + N
Sbjct: 61 ISVPN 65
>gi|414867860|tpg|DAA46417.1| TPA: hypothetical protein ZEAMMB73_190155 [Zea mays]
Length = 638
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 137/319 (42%), Gaps = 71/319 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W DKYRPN L + + A L L+ H +F GP GK++ ++AL+++ +GP
Sbjct: 252 VWADKYRPNVLNEFICNKTVAAELYQLVVAHQCRHFIFEGPPAVGKRSMVLALIRDAFGP 311
Query: 63 VIILNETDHLTREAQQALRRTM---------------------EKYI------------- 88
+ E E + +R+ + EKYI
Sbjct: 312 HDLKIEEQTKRFELKGEIRKHIDVRVKTSEHHVEVSLADLHGYEKYIITTLLSESIPSPS 371
Query: 89 -----TTCRLIL------------------------------CANSMSQVIPAIRSRCLC 113
T CR+I+ C + S + AI+ C
Sbjct: 372 SVCDHTNCRVIVIHDADKLSFDLQHYIGWFLGRYAGCNKIIFCCSDASN-LEAIKHLCKV 430
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
+ + P+ +EI++VL I +E + +P + A R+ ++ NLR+ I EA+ YPF
Sbjct: 431 VTLQPPSFDEIINVLEYIATQESIDLPRDLARRITVGANNNLRQTIRSFEATWKANYPF- 489
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
ID Q++ W+ I + A I+ E SPK+L VR ++ +++ H + + +F +L+ L
Sbjct: 490 IDGQVILTGWEEEISNVASNIMEEPSPKQLFLVRGKIRKMIEHDVSPHFIFSHLVAELKR 549
Query: 234 NCDSDLKSKSIEMAAMFEH 252
+ D D + E+A+ H
Sbjct: 550 DKDEDFQHSVDELASDLNH 568
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KEL+GP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPE 95
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 96 LMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPPFKIIILDEADSMT 155
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + E S L +I
Sbjct: 156 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQENARSRLEDIAA 215
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
KEG+ + L + S+ +LR+AI +++
Sbjct: 216 KEGVALEDGAVDALIKCSEGDLRKAITFLQSA 247
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + + +R + +G PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGRN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ +E L + PE
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKLSPEAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 47/203 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP + + + LR L D P+LLFYGP G GK + I+AL +EL+G
Sbjct: 34 WVEKYRPKCVDDVAHQDEVVAVLRKSLTGADLPNLLFYGPPGTGKTSTILALSRELFGFQ 93
Query: 62 ---------------------------------------------PVIILNETDHLTREA 76
+IIL+E D +T+ A
Sbjct: 94 LMKERVLELNSSDERGINVIREKVKNFAQLTANSLREDGKKCPPYKIIILDEADSMTKAA 153
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q+ALRRTMEK T R L N ++++IP I SRC R + + E+ L +C+KEG
Sbjct: 154 QEALRRTMEKSSKTTRFCLICNYVTRIIPPIISRCSQFRFKSLSTEDQKKRLWMVCEKEG 213
Query: 137 LTIPPEFALRLAQQSDRNLRRAI 159
+ I + L + S+ +LR+A+
Sbjct: 214 VKISQDAMSCLVKCSEGDLRKAM 236
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ L+ + PH+LFYGP G GK + I+AL K+LYGP
Sbjct: 20 WVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGPR 79
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 80 LFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSMT 139
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRT+E Y R L N ++++I + SRC R +E +S + I +
Sbjct: 140 NDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSRIKYIVE 199
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
KE L + + L S+ +LR+AI +++
Sbjct: 200 KENLNVDEDVPETLLSISNGDLRKAITFLQSA 231
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 49/223 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WVDKYRP ++ ++ + + L+ L+ + PHLLFYGP G GK + +A+ ++LYGP
Sbjct: 8 WVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLYGPE 67
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T++AQ
Sbjct: 68 LAKARVKELNASDERGINVVREKIKSFAATSVGQPVPGYPCPPFKLLILDEADAMTQDAQ 127
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKEG 136
ALRRTME + R I N +S++I + SRC R P H I+S +++IC +EG
Sbjct: 128 NALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRF-RPLHGGIMSARISHICNEEG 186
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ + L + S +LR+AI + S V+ Q++ Q +
Sbjct: 187 VQLQEGAMETLGKVSGGDLRKAITTLQ-SAVRLKGLQVEPQTL 228
>gi|401408351|ref|XP_003883624.1| putative replication factor c [Neospora caninum Liverpool]
gi|325118041|emb|CBZ53592.1| putative replication factor c [Neospora caninum Liverpool]
Length = 403
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 50/258 (19%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+ I + D L+ AQ ALRRT+E Y + + + + + ++SRC C+R+P P+H
Sbjct: 137 ICIFQDADLLSEGAQHALRRTLEIYSSRLKFVFLVERLERFSAPLKSRCFCVRVPLPSHR 196
Query: 123 EIVSVLTNICKKEGLTIPPEFA-----LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
E+V+ L +IC +EGLT PE A +++QS RNLRRA L E + +
Sbjct: 197 EVVTYLRSICDREGLT--PEMAPDALLQTISEQSGRNLRRAGLALECIATHNFTAPLSSS 254
Query: 178 IVEP---------DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF---- 224
+ P W+ + A +Q+P L E R LY+LL IP ++
Sbjct: 255 LSIPRGEASPFPLPWERLCDEAAVCAFRQQNPVSLSECRGMLYDLLAVLIPGELILMRLL 314
Query: 225 -------------------KYLLEGLLANCDSDLKSKS-----------IEMAAMFEHRI 254
+ G+ A+ L + AA F H +
Sbjct: 315 ATLLALLKKESPGKATHSPPPVHAGVSADTPGALGKPRKAPGQDPATVLVHAAAHFSHTL 374
Query: 255 HKGSKPIFHIEAYVASFM 272
KGSK I H+EA++A M
Sbjct: 375 KKGSKEIIHLEAFLAQAM 392
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDK+ P +++L H + L PHLLFYGP+GAGKKTR++AL + ++G
Sbjct: 2 LWVDKHSPREIEELSIHPDVSRLLLKQAASPSLPHLLFYGPTGAGKKTRVLALARRIFG 60
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK T A+ +E+Y
Sbjct: 28 VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD 87
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 88 DWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 147
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R T I + + I + + + +
Sbjct: 148 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDGV 207
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 208 DALVYAADGDMRKAINALQAAAV 230
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 45/298 (15%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R + L +I K EG+ + +
Sbjct: 124 IMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDD 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ + S+ ++R+AI + + + + + I D +L +
Sbjct: 184 AIDLIYEVSEGDMRKAINLLQVAAATSKVVDAN-AVASATTMIRPADVVEL-FNLAFNGD 241
Query: 203 LLEVRTRLYELL-VHSIP-VNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
+ + R +L EL+ V I ++ + + E + D ++K++ E+ A ++R+ +GS
Sbjct: 242 VTKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGS 299
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWV+KYRP +L + L+ +K+ + PHLLF GP G GK T AL +L+G
Sbjct: 8 LWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGE 67
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRL 127
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL AN S++I I+SRC R + ++++ L I + EG+ E
Sbjct: 128 MELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEA 187
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + +A+
Sbjct: 188 LDAIYEISEGDMRKAINVLQAA 209
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 41/203 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R + L I K EG+ + +
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRED 183
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + + +
Sbjct: 184 AINMIYELSEGDMRKAINLLQVA 206
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 101/237 (42%), Gaps = 51/237 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + ++ PHLLFYGP G GK + I+AL + +YG
Sbjct: 44 WVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYGAE 103
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 104 NMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADAMT 163
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
AQ ALRR MEKY R + AN ++ PA+ SRC R ++I S++ + +
Sbjct: 164 NTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKVIE 223
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDT 190
+E + I P+ L + S ++RRA+ + +A P Q+ P +I +RDT
Sbjct: 224 EENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQI-VRDT 279
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 125/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + I +E + + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D + + +E ++RI +G+
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 312
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 313 QLEAMLASL 321
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNM 224
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 50/258 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L+ + + LR+ +++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 15 IWIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWRGNFLELNASDERGIDVVRDRIKNFARASFGGYDYRIIFLDEADSLTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R +L N S++I I+SRC R + + + I + EG+ + +
Sbjct: 135 EQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQS 199
L + ++RRAI +A+ ++V+ + I TA+ ++
Sbjct: 195 DALVYAAGGDMRRAINSLQAAATT-------GEVVDEEAVYLITSTARPEDIEEMVQSAI 247
Query: 200 PKKLLEVRTRLYELLVHS 217
+ L R++L LLV +
Sbjct: 248 DGEFLAARSKLETLLVDT 265
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 135/308 (43%), Gaps = 56/308 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP+ ++++ + + LR + G PHL+FYGP G GK + I+AL KEL+G
Sbjct: 50 WVEKYRPSKVEEVSHQTEVVSALRQSILTGQVPHLMFYGPPGTGKTSTILALSKELFGHE 109
Query: 62 ---------------------------------------------PVIILNETDHLTREA 76
+IIL+E D +T +A
Sbjct: 110 FFKQRVLELNASDERGIAIVREKIKKFAQRKISKHPDSSFQCPPIQIIILDEADSMTIDA 169
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRR +E+Y T R + N +S++I + SRC+ R E + L IC++E
Sbjct: 170 QAALRRIIEQYSTNTRFCIICNYISKIIDPLASRCVKFRFSPIAKEAQIERLKMICEREN 229
Query: 137 LTIPPEFALR-LAQQSDRNLRRAILMCEAS---KVQQYPFQIDQQIVEPDWKIYIRDTAK 192
+ + + L S +LRR+I + + K+QQ + + I + IR +
Sbjct: 230 VNVASDNVFNALVDISAGDLRRSINTLQTASSFKLQQLNVKDIESISGVVPEDVIRKIER 289
Query: 193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD-SDLKSKSI-EMAAMF 250
++ EV+ EL++ V L +L+ L N SDLK I E+ A
Sbjct: 290 VVTQTDG---FSEVQQLTQELILDGFDVQQLMIQMLDYFLINDKLSDLKKARISEIVAET 346
Query: 251 EHRIHKGS 258
+ ++ +G
Sbjct: 347 DVKVIQGG 354
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + L++ +K G PHLLF GP G GK T + L +EL+G
Sbjct: 15 WVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFGEH 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRR M
Sbjct: 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRMM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + R IL N S++I I+SRC R E+I + I + EGL + E
Sbjct: 135 EMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEGLELTEEGL 194
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L ++ +LRRAI + +A+
Sbjct: 195 QALLYIAEGDLRRAINVLQAA 215
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNM 224
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++++ F + L+ ++ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 34 WVEKYRPKCMEEVAFQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAARELYGPE 93
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 94 LYRQRVLELNASDERGIQVVREKVKRFAQLTVAGHRTDGKPCPPFKIIILDEADSMTNAA 153
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R ++ L +IC KE
Sbjct: 154 QAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEERLLDICDKEN 213
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L E L + S+ +LR+AI +++
Sbjct: 214 LKYSKEGIAALVKVSEGDLRKAITFLQSA 242
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L ++ H L+ +++ D PHL+F GP+G GK A+ +E+YG
Sbjct: 18 VWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGVGKTASAQAIAREVYGD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWKENFLELNASDQRGIDVVRDRIKDFARSSFGGYDHRIIFLDEADALTSDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + + I E + +
Sbjct: 138 EQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQIREIAATETIELTDNGV 197
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 198 DALVYAADGDMRKAINGLQAAAV 220
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L +L H + LR L++ PH L YGP G GK + I+A K++YG
Sbjct: 427 WVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYGAG 486
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T++AQ ALRR +
Sbjct: 487 YKSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKGIKLIILDEADMMTKDAQFALRRVI 546
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R L N +++IPA++SRC R ++I + +I ++E + I +
Sbjct: 547 EKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENVAIGTKAT 606
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
L + ++RR + + +A+ V YP ++
Sbjct: 607 DALLELGKGDMRRVLNVLQAAAV-AYPGEV 635
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 144/325 (44%), Gaps = 68/325 (20%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
SLWV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 32 SLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG 91
Query: 62 P------------------------------------------VIILNETDHLTREAQQA 79
+++L+E D +T++AQ A
Sbjct: 92 AQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFA 151
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI 139
LRR +EKY + R L N ++++IPA++SRC R + L ++ E L +
Sbjct: 152 LRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDV 211
Query: 140 PPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY----------IRD 189
L + S+ ++R+A+ + +++ + QQI E +Y I
Sbjct: 212 QDSGLSALVRLSNGDMRKALNILQSTHMAS------QQITEE--AVYLCTGNPLPKDIEQ 263
Query: 190 TAKLIISEQ---SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEM 246
+ +++EQ S K++ +++TR L+ + +F + + N S ++ + +
Sbjct: 264 ISYWLLNEQYSESFKRIYDMKTRKGLALIDIVREVTMFVFKI-----NMPSAVRVQLVND 318
Query: 247 AAMFEHRIHKGSKPIFHIEAYVASF 271
A E+R+ G + + VASF
Sbjct: 319 LADIEYRLSFGCNDKLQLGSVVASF 343
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 20 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 79
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 80 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVILDEADAMTQDAQNALRRV 139
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 140 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 199
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 200 MKALVTLSSGDMRRALNILQSTNM 223
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 94 MIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEADSMT 153
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L +I +
Sbjct: 154 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLESIAE 213
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+T+ L + S+ +LR+AI +++
Sbjct: 214 AEGVTLEDGAVDALIKCSEGDLRKAITFLQSA 245
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 39/172 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L + + + L+ +KE + PHLLF GPSG GK T +AL+ +LYG
Sbjct: 9 LWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGD 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 69 NYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVVLLDEADNMTADAQQALRRT 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
ME Y R IL N +S++I I+SR R E++V+ L I K E
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + +KE PHLLFYGP G GK + I+A ++LY P
Sbjct: 11 WVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQ 70
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 71 SFGSMVLELNASDDRGINIVRGQILDFASTRTIFKGGYKLIILDEADAMTNDAQNALRRI 130
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPAI+SRC R + ++I+ L ++ + EG+ + +
Sbjct: 131 IEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDVTDDG 190
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L + ++R+ + + +++
Sbjct: 191 KKALMTLAGGDMRKVLNVLQST 212
>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 539
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 40/204 (19%)
Query: 1 MSL-WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59
MSL WV+KYRP+ + H L+ + PH+LFYGP G GK T +A++K+L
Sbjct: 1 MSLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL 60
Query: 60 YGP---------------------------------------VIILNETDHLTREAQQAL 80
G IIL+E+D LT++AQ AL
Sbjct: 61 CGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQNAL 120
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RRT+E++ CR I N + + PAI+SRC +R + + ++ NI KEG+ I
Sbjct: 121 RRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPNALTKIVENITTKEGMEID 180
Query: 141 PEFALRLAQQSDRNLRRAILMCEA 164
+ + + S + R I +A
Sbjct: 181 DDAKKSIIEISKGDARSIINTLQA 204
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 90/202 (44%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + + LR LK D P+LLFYGP G GK + I+A ++L+G
Sbjct: 37 WVEKYRPKTVDDIVEQVEVVSVLRQTLKGADLPNLLFYGPPGTGKTSTILAAARQLFGDM 96
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+++L+E D +T AQ
Sbjct: 97 FKERILELNASDDRGIQVIRDKVKTFAQLSASSTRPDGQPCPPFKIVLLDEADSMTSAAQ 156
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME Y T R L N +S++IP I SRC R +I L+ I K E +
Sbjct: 157 AALRRTMELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKISKAEKV 216
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
I + + L + + +LRRAI
Sbjct: 217 NINDDTLMTLVKCTGGDLRRAI 238
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 143/323 (44%), Gaps = 68/323 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 42 WVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 101
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 102 YHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALR 161
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY R L N ++++IPA++SRC R + L ++ + EGL +P
Sbjct: 162 RVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPE 221
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY----------IRDTA 191
L S+ ++R+A+ + +++ + QQI E +Y ++
Sbjct: 222 SGLEALKCLSNGDMRKALNILQSTHMAS------QQITEE--TVYLCTGNPLPQDVQQIT 273
Query: 192 KLIISE---QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAA 248
+++E +S K++ E++TR LV + +F + ++ SD++ I A
Sbjct: 274 HWLLNESFAESYKRISEIKTRKGLALVDIVREVTMFVFKIK-----MQSDIRVPLINDLA 328
Query: 249 MFEHRIHKGSKPIFHIEAYVASF 271
E+R+ G + + +ASF
Sbjct: 329 DIEYRLSFGCNDKLQLGSLIASF 351
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 20 WVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 79
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 80 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 139
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 140 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 199
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 200 MKALITLSSGDMRRALNILQSTNM 223
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 125/288 (43%), Gaps = 47/288 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 97
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAA 157
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L ++ +KE
Sbjct: 158 QAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKEN 217
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
+ I E L + S+ +LR+AI +++ +I ++ V + R+T ++S
Sbjct: 218 VKITSEAVSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLS 277
Query: 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSI 244
++ T L+ V L L + ++ + D K KSI
Sbjct: 278 ACWSGSFEKLETVAKNLISEGYAVAQLISQLHDLVVESEDFSDKQKSI 325
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A K LY
Sbjct: 138 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKRLYKDK 197
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 198 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 257
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 258 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 317
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 318 MKALVTLSSGDMRRALNILQSTNM 341
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L L H + + + E PHLLFYGP G GK + I+A +++YGP
Sbjct: 13 WVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYGPK 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 EFGSMVLELNASDDRGIGIVRGEILNFASTKSIFKSGFKLIILDEADAMTNDAQNALRRV 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + ++ + + ++E LT+ +
Sbjct: 133 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQERLTVTDDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++R+A+ + +++ +
Sbjct: 193 KKALMDLAQGDMRKALNILQSTSM 216
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 47/223 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 39 WVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPPGTGKTSTILAASRELYGPE 98
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 99 LFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKIIILDEADSMTSAA 158
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + L +IC+KE
Sbjct: 159 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKEN 218
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ I E L + S+ +LR+AI +++ +I ++IV
Sbjct: 219 VQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIV 261
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 125/288 (43%), Gaps = 47/288 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 41 WVEKYRPKSVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 100
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 101 LFRLRVLELNASDERGIQVIREKVKNFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAA 160
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L NI +KE
Sbjct: 161 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLNITEKEN 220
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196
+ I E L + S+ +LR+AI +++ +I ++++ + +T + +
Sbjct: 221 VKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIAGVIPSETIDGVFA 280
Query: 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSI 244
++ T + +L++ L L + ++ N K KSI
Sbjct: 281 ACQSGSFDKLETVVKDLIIEGHAATQLVNQLHDVVVENDTLSDKQKSI 328
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 40/214 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L +L H + + + E PH+LFYGP G GK + I+A ++LYG
Sbjct: 38 WVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYGDK 97
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T+ AQ ALRR +
Sbjct: 98 FRSMILELNASDDRGIDVVREQIKNFASTRKLFSSGFKLIILDEADAMTQAAQNALRRVI 157
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R L N + ++IPA++SRC R +I +T+I +EG+ I
Sbjct: 158 EQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQEGINITQAGR 217
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQI 178
+ + S ++RRA+ + +A YP ++ I
Sbjct: 218 QAVLKLSQGDMRRALNILQAVHT-GYPEATEETI 250
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 48/219 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 41 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 100
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 101 YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALR 160
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R L N ++++IPA++SRC R + L +I K EGL++
Sbjct: 161 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDD 220
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L + S+ ++R+A+ + +++ + QQI E
Sbjct: 221 GGLTALVRLSNGDMRKALNILQSTHMAS------QQITE 253
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP +L + + +R L+EG PHLLFYGP G GK + I+AL +E++G
Sbjct: 16 WVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGKN 75
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 76 YSNMVLELNASDDRGIEVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + I ++N+ E + I +
Sbjct: 136 EKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIKISDDAK 195
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L S ++RR + + +ASK
Sbjct: 196 DALITLSQGDMRRVLNVLQASKA 218
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 36 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 95
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 96 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 155
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 156 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 215
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 216 MKALVTLSSGDMRRALNILQSTNM 239
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 39/194 (20%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--- 61
++++RP L L L ++ GD PHLLFYGP G GK T +AL +ELYG
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 60
Query: 62 --------------------------------PV----IILNETDHLTREAQQALRRTME 85
PV +IL+E D++T +AQQALRR ME
Sbjct: 61 RSSVLELNASDERGIDVIREKVKEFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIME 120
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
Y +T R IL AN +S +I I+SRC R E ++ L I K+ G+ + +
Sbjct: 121 MYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTEDGLE 180
Query: 146 RLAQQSDRNLRRAI 159
+ + S ++R+AI
Sbjct: 181 AIWEVSQGDMRKAI 194
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + +I EG+ + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 41/217 (18%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W+++YRP L + + L + +K PHLLF G +G GK T +AL +E +G
Sbjct: 7 TIWIERYRPTRLADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALAREFFG 66
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 67 EAWHINFREMNASDERGIDVVRNQIKQFARTSPLEGAEFKILFLDEADALTTDAQAALRR 126
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y CR IL N S++I I+SRC R T E I + I KEG+T+ P+
Sbjct: 127 TMETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKEGITVTPD 186
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ + ++R+AI + + + IDQ++V
Sbjct: 187 AIEAIVYIAQGDMRKAINALQGASI--VSKSIDQEMV 221
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 48/219 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 41 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 100
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 101 YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALR 160
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R L N ++++IPA++SRC R + L +I K EGL++
Sbjct: 161 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDD 220
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L + S+ ++R+A+ + +++ + QQI E
Sbjct: 221 GGLTALVRLSNGDMRKALNILQSTHMAS------QQITE 253
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + L+ L+ + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 34 WVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPE 93
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 94 LMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRALYPCPPYKIIILDEADSMT 153
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + + I +
Sbjct: 154 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDVGNAKRRVEEIAE 213
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
KEG+++ A L + S+ +LR+AI +++
Sbjct: 214 KEGVSLEDGAAETLIRCSEGDLRKAITFLQSA 245
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|269986185|gb|EEZ92497.1| Replication factor C [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 315
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 51/317 (16%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LW++KYRP + ++ + L+ + ++ + H++ GP G GK T + L K ++
Sbjct: 1 MALWIEKYRPQSFDEIIGQKEIVEKLKAMAEKKEIQHMILSGPPGVGKTTSAVVLAKAVF 60
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
GP +I+ +E D LT+EAQQALRR
Sbjct: 61 GPDWTQNFIELNASDDRKLSVIQGKVKEFARTKPIDAPFKIILFDEADSLTQEAQQALRR 120
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME+YI TCR + N S +I ++SRC +R + E++ + I + E L I E
Sbjct: 121 MMEEYINTCRFVFSVNYQSNIIEPLQSRCAILRFQPLSKEDVHKFIKRIAESEKLDIDKE 180
Query: 143 FALRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP- 200
L S +LR + LM S V + +ID + V + D +K I ++
Sbjct: 181 AMDALDYVSRGDLRTLVNLMQSLSNVSK---KIDAKAVLQSSGLM--DISKTIDGLKTAL 235
Query: 201 -KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD---SDLKSKSIEMAAMFEHRIHK 256
+ R E++ + + + L + +++ D +K+ E A ++RI +
Sbjct: 236 SGDFKKSREIFSEIIDNGVNMKELLISIF-NVISTTDIVNEKVKNYVFEKLAETDYRIVE 294
Query: 257 GSKPIFHIEAYVASFMA 273
G+ P +A++A F+A
Sbjct: 295 GATPFIQFQAFLA-FLA 310
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 48/219 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 41 WVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 100
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 101 YSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALR 160
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R L N ++++IPA++SRC R + L +I K EGL++
Sbjct: 161 RVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDE 220
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L + S+ ++R+A+ + Q QQI E
Sbjct: 221 GGLTALVRLSNGDMRKAL------NILQSTHMASQQITE 253
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 50/206 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ L+ + PH+LFYGP G GK + I+A+ K+LYGP
Sbjct: 23 WVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYGPR 82
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 83 LFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILDEADSMT 142
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R + ++ L IC
Sbjct: 143 GDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTRLEYICG 202
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI 159
KE + + + + S+ +LRRAI
Sbjct: 203 KESIDVDTNILKEILRISEGDLRRAI 228
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 147/323 (45%), Gaps = 68/323 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 42 WVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 101
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 102 YQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALR 161
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R L N ++++IPA++SRC R + L ++ K EGL +
Sbjct: 162 RVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVED 221
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYI-------RDTAKL- 193
L + S+ ++R+A+ + +++ + QQI E +Y+ +D ++
Sbjct: 222 SGLAALVRLSNGDMRKALNILQSTHMAS------QQITEE--TVYLCTGNPLPKDIEQIS 273
Query: 194 --IISEQ---SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAA 248
+++EQ S K++ E++TR LV + LF + ++ S ++ + + A
Sbjct: 274 YWLLNEQFADSFKRIDEMKTRKGLALVDIVREVTLFVFKIK-----MPSAVRVQLMNDLA 328
Query: 249 MFEHRIHKGSKPIFHIEAYVASF 271
E+R+ G + + +ASF
Sbjct: 329 DIEYRLSFGCNDKLQLGSVIASF 351
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 95/222 (42%), Gaps = 51/222 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN+L+ + H + + PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGAK 106
Query: 62 -------------------------------------PV------------IILNETDHL 72
PV IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T AQ ALRR MEKY R + AN ++ PA+ SRC R ++I +++ +
Sbjct: 167 TATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQVI 226
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
+KE + I PE L + S ++RRA+ + +A P I
Sbjct: 227 EKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPI 268
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 18 IWIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 77
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 78 DWRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHDYRIIFLDEADSLTNDAQSALRRTM 137
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + I +I EG+ + +
Sbjct: 138 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGIELTEDGL 197
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 198 DALVYAAGGDMRRAINSLQAA 218
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+ L+ + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPD 94
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 95 MIKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIIILDEADSMT 154
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L I +
Sbjct: 155 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKRRLEEIAE 214
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
KEG+ + L + S+ +LR+AI +++
Sbjct: 215 KEGVALEDGAVDALIKCSEGDLRKAITFLQSA 246
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNM 224
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + L+++ ++G+ P+L+ GP G GK T I++L EL GP
Sbjct: 19 WVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKTTSILSLAHELLGPS 78
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 79 YREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRT 138
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 139 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEG 198
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 199 LEAIIFTADGDMRQALNNLQAT 220
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 41/202 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + ++N + + PHLLFYGP G GK + I+A+ ++++GP
Sbjct: 24 WVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGPQ 83
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+I+L+E D +T+ AQ ALRR
Sbjct: 84 FRNSVLELNASDDRGIDVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRR 143
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+E+Y R + N ++++IPAI+SRC R +++ L ++ + EG I +
Sbjct: 144 VIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIESEGCNITQD 203
Query: 143 FALRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 204 GKEALLKLSRGDMRRALNVLQA 225
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALITLSSGDMRRALNILQSTNM 225
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 40/205 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + LR L EG+ P+L+ GP G GK T ++AL +L G
Sbjct: 7 WVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQLLGDK 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E+D +T AQQA+RR
Sbjct: 67 EKDAVIELNASDDRGIDVVRKNIKEFAKRHVALPEGRHKVVLLDESDSMTDAAQQAMRRI 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R + N +VI I+SRC +R EI + L IC+ EG E
Sbjct: 127 MENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLMKICELEGFKPESEG 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQ 168
LA+ +D ++R AI +++ V+
Sbjct: 187 IATLARLADGDMRTAINGLQSTYVR 211
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNM 224
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 146/323 (45%), Gaps = 63/323 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + L L+K+ PHLLFYGP G GK + I+ + ++ P
Sbjct: 14 WVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFTPK 73
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+IIL+E D +T++AQ
Sbjct: 74 QLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGKSHIKLIILDEADAMTKDAQN 133
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
ALRR +EK+ R + N +S++IPA++SRC R E+I+ L +I K E L
Sbjct: 134 ALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKSESLK 193
Query: 139 IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV-----EPDWKIYIRDTAKL 193
+ + L + + ++RR + + + S +P +ID++ V +P + I D ++
Sbjct: 194 LTEDGERALMKLAGGDMRRVLNILQ-STAMAFP-KIDEESVYLCVGQPLPSV-IEDIVRI 250
Query: 194 IIS---EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAM 249
+++ E + K+ +R +H+ ++ + + + + + SD+ I A
Sbjct: 251 LLNDSFEDAFTKIEGIRC------LHAFALSDILASMQDAVYQLDIPSDVTCLLIAQMAQ 304
Query: 250 FEHRIHKGSKPIFHIEAYVASFM 272
E+R+ +G + A +A+F+
Sbjct: 305 IEYRLARGCTDRMQLAALIAAFV 327
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 118/280 (42%), Gaps = 70/280 (25%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L+ L+ + PH+LFYGP G GK + I+AL K L+GP
Sbjct: 41 WVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPT 100
Query: 63 ----------------------------------------------------VIILNETD 70
+IIL+E D
Sbjct: 101 LYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPPFKIIILDEAD 160
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME+Y R L N ++++I + SRC R A ++
Sbjct: 161 SMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRISE 220
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK---VQQYPFQIDQQIVEPDWKIYI 187
I EGLT+ L + S+ +LRRAI +++ P + D Q
Sbjct: 221 IAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQSAARLVGATQPVKKDSQ---------- 270
Query: 188 RDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYL 227
D ++ ++ +P L+ VRT E + +P +VL K +
Sbjct: 271 -DDTEMTDADSAP-ALITVRT--VEEIAGVVPESVLDKLM 306
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 41/202 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L+ L H + ++N + PHLLFYGP G GK + I+A+ ++++GP
Sbjct: 26 WVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFGPQ 85
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+I+L+E D +T+ AQ ALRR
Sbjct: 86 FRNSVLELNASDDRGIEVVREQIKGFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRR 145
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+E+Y R + N ++++IPAI+SRC R +++ L ++ + EG I +
Sbjct: 146 VIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIENEGCKITQD 205
Query: 143 FALRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 206 GKEALLKLSRGDMRRALNVLQA 227
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 89/200 (44%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + +R KEG PHLLFYGP G GK + I+AL +ELYG
Sbjct: 8 WVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGKN 67
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D ++ AQ ALRR +
Sbjct: 68 YRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSGFKLIILDEADAMSNAAQNALRRVI 127
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + + + K EGL I +
Sbjct: 128 EKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAEGLKIASDAR 187
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S+ ++RRA+ + +A
Sbjct: 188 QSLLELSEGDMRRALNVLQA 207
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 49/205 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L +L H + L ++ PHLLFYGP G GK T ++A +++Y P
Sbjct: 13 WVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYHPS 72
Query: 63 ------------------------------------------------VIILNETDHLTR 74
++IL+E D +T+
Sbjct: 73 KMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVPFKLVILDEADAMTK 132
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
+AQ ALRR +EKY R + N ++ +IPAI+SRC R IV L I K
Sbjct: 133 DAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKS 192
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL + P+ L + S ++R I
Sbjct: 193 EGLQMTPDGREALLRVSKGDMRTVI 217
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + L+ + G+ PH+LFYGP G GK + I+AL K+LYGP
Sbjct: 37 WVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPN 96
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 97 LYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSMT 156
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R +E ++ L I K
Sbjct: 157 NDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIAK 216
Query: 134 KEGLTI-----PPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ 176
+E L + P E + + S+ ++R+AI +++ Q++
Sbjct: 217 EENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSSLQLEN 264
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN + + + L + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 17 WVEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPS 76
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 77 YREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTTGAQQALRRT 136
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 137 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEG 196
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 197 LEAIIFTADGDMRQALNNLQAT 218
>gi|224129392|ref|XP_002320575.1| predicted protein [Populus trichocarpa]
gi|222861348|gb|EEE98890.1| predicted protein [Populus trichocarpa]
Length = 725
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
IIL E D L+ +A ++ +E+Y + C N +S++ P IRS C +++ P+
Sbjct: 454 AIILYEADMLSTDALLYIKWVLERYKGFSKFFFCCNDVSRLQP-IRSLCTVVQLLPPSKR 512
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+V VL I ++E + +P A ++A +S NLR+AI EAS YPF DQ+I+
Sbjct: 513 EVVQVLEFIAEQEAIELPYPLAEKIADKSKNNLRQAIRSFEASWHGSYPFTEDQEILT-G 571
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
W+ I + AK ++ EQSPK+L +R +L L+ H + + F+ LL L + D
Sbjct: 572 WEDDIANIAKDMVEEQSPKQLYIIRGKLQNLIEHDVSPDFFFESLLGELKKHLD 625
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 5 VDKYRPNNLQKLDFHCK--QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
+KY+P L+ DF C QA ++ ++++ D H +F GP+G GK+T I A+L+E +G
Sbjct: 317 ANKYQPKALK--DFICNRDQAIRMQGVMRDFDCNHFIFEGPAGVGKRTMIRAMLQEAFG 373
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 88/209 (42%), Gaps = 53/209 (25%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + N L+ L+ + PH+LFYGP G GK + I+AL K L+GP
Sbjct: 38 WVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 97
Query: 63 ----------------------------------------------------VIILNETD 70
+IIL+E D
Sbjct: 98 LYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPPFKIIILDEAD 157
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME Y R L N ++++I + SRC R + L
Sbjct: 158 SMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQ 217
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
I K E L + +L Q SD +LRRAI
Sbjct: 218 IAKLENLELEDGVVDKLIQCSDGDLRRAI 246
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 53/313 (16%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L+++ + L ++ + PHLLF GP G GK +AL ++L+G
Sbjct: 7 IWVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFGE 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 67 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGDAPFKIIFLDEADALTPDAQAALRRT 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y CR IL N +S++I I+SRC + E + L IC+ EG+ I +
Sbjct: 127 MEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEGVKITEDG 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQ 198
L S+ + R+AI + + ++V+ + I TA+ ++
Sbjct: 187 LEALIYVSNGDFRKAINALQGAAAL-------GKVVDAEAIYQITATARPEELANLLETA 239
Query: 199 SPKKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHK 256
K +E R+ L +L++ +V+ + E L + D +K I+ + R+ +
Sbjct: 240 LEGKFMEARSILDKLMIEYGMSGEDVVSQLFREILSSGMDEKMKVLLIDKLGEIDFRLTE 299
Query: 257 GSKPIFHIEAYVA 269
G+ ++AY+A
Sbjct: 300 GAHERIQLDAYLA 312
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 47/208 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L + H L+ LL FPHLLFYGP G GK + I+A+ +E+YGP
Sbjct: 31 WVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGPS 90
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 91 YKSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARSNFKLVILDEADAMTNVA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRR +E+Y T R + AN ++ PA+ SRC R I + + E
Sbjct: 151 QNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVIDAEK 210
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEA 164
+ I P+ L + S ++RRA+ + +A
Sbjct: 211 VKIAPDAKAALLELSKGDMRRALNVLQA 238
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 101/223 (45%), Gaps = 47/223 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 39 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAASRELYGPE 98
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 99 LFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKIVILDEADSMTSAA 158
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + L +IC+KE
Sbjct: 159 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKEN 218
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ I E L + S+ +LR+AI +++ +I ++IV
Sbjct: 219 VKITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIV 261
>gi|340344105|ref|ZP_08667237.1| Replication factor C [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519246|gb|EGP92969.1| Replication factor C [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 316
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 45/309 (14%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELY 60
+WV+KYRP+ L ++ + L L+K+ D PHL+F G +G GK T + + +++
Sbjct: 5 GMWVEKYRPSKLSEIVNQKEIIGSLEALIKDPTDMPHLMFSGSAGVGKTTTALCISRQIL 64
Query: 61 G---------------------------------------PVIILNETDHLTREAQQALR 81
G +IIL+E D +T +AQ ALR
Sbjct: 65 GEYAKDYTLELNASDERGIGMVREKVKKFSRFAGMVDVPFKIIILDEADEMTSDAQTALR 124
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +E CR IL AN++S++I I+SRC + + E++++ L NI KKE +
Sbjct: 125 RIIEDTAKYCRFILIANNISKIIDPIQSRCATFKFTSIPEEDVINHLENIAKKEKVKSDK 184
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
+ + S+ +LR AI + +A+ +I ++ V+ + +++
Sbjct: 185 KGLKAIYDYSEGDLRHAINLMQAT---ASIGEISEENVKSSAGLTKTSDVDIVLKMALSG 241
Query: 202 KLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP 260
K+++ R ++ EL V+ + + KYL + D S +E+ A +++RI G+ P
Sbjct: 242 KIVDAREKMIELTKVYGMSESDFLKYLNSAVF-KIKHDNISDILEVIAKYDYRILVGANP 300
Query: 261 IFHIEAYVA 269
+ A +A
Sbjct: 301 EIQLTAMLA 309
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+ L+ + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPD 94
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 95 MIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPPFKIIILDEADSMT 154
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L I +
Sbjct: 155 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLEEIAE 214
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
KEG+ + L + S+ +LR+AI +++
Sbjct: 215 KEGVPLEDGAVDALIKCSEGDLRKAITFLQSA 246
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + +ICK+
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEIMSSRILHICKE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
E L + E L+ S +LRRAI
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAI 214
>gi|374635888|ref|ZP_09707477.1| transcriptional regulator, XRE family [Methanotorris formicicus
Mc-S-70]
gi|373560850|gb|EHP87100.1| transcriptional regulator, XRE family [Methanotorris formicicus
Mc-S-70]
Length = 1300
Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats.
Identities = 73/218 (33%), Positives = 115/218 (52%), Gaps = 12/218 (5%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+I L+E+D LT +AQ ALRRTMEKY CR IL N S++IP I+SRC R E
Sbjct: 1087 IIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKKE 1146
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEP 181
++V L I +KEGLT+ PE + S+ ++R+AI ++ A+ V + +ID+++V
Sbjct: 1147 DVVKKLKEIAEKEGLTLTPEGLEAIIYVSEGDMRKAINVLQTAASVSK---EIDEEVV-- 1201
Query: 182 DWKIYIR---DTAKLIISEQSPKKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCD 236
+K+ R + K +I K +E R LY+L+V +V+ + E N D
Sbjct: 1202 -YKVSSRARPEEIKKMIELALEGKFIEARELLYKLMVDWGMSGEDVILQIFREIPSLNID 1260
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
K + +E ++RI +G+ + A +A M
Sbjct: 1261 ERKKVELVEALGECDYRIVEGANERIQLSALLAKMCNM 1298
Score = 45.4 bits (106), Expect = 0.028, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGK 48
WV+KYRP L ++ H + L+ +++ PHLLF GP G GK
Sbjct: 5 WVEKYRPKTLDEVVGHEEIVKRLKKYVEKKSMPHLLFSGPPGVGK 49
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 102/223 (45%), Gaps = 47/223 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 97
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAA 157
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L ++ +KE
Sbjct: 158 QAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEH 217
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ I E L + S+ +LR+AI +++ +I ++IV
Sbjct: 218 VKISSEAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIV 260
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + +ICK+
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEIMSSRILHICKE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
E L + E L+ S +LRRAI
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAI 214
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP +L ++ + L++ +++ + PHLLF G G GK + +AL EL+
Sbjct: 2 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELF 61
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G ++ L+E D LT EAQ ALR
Sbjct: 62 GDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y T R I N S++IP I+SR + +R E I L I K EG I
Sbjct: 122 RTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDE 181
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
E L + S ++R+AI + +A
Sbjct: 182 ESMHALVEVSAGDMRKAINVLQA 204
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 98/226 (43%), Gaps = 52/226 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 94 MIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEADSMT 153
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L +I +
Sbjct: 154 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLESIAE 213
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQ 177
EG+T+ L + S+ +LR+AI L A V P + D +
Sbjct: 214 AEGVTLEDGAIDALIKCSEGDLRKAITFLQSAARLVGAKPLEKDGE 259
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 23 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 82
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 83 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 142
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ +E + I +
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEENVDITEDG 202
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 203 MKALITLSSGDMRRALNILQSTNM 226
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 25 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 84
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 85 EFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 144
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 145 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDISEDG 204
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 205 MKALITLSSGDMRRALNILQSTNM 228
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 38/195 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
W +KYRP + ++ + + LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 62 -------------------------------PV------IILNETDHLTREAQQALRRTM 84
P+ +IL+E D++T +AQQALRR M
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPIKAPFKLVILDEADNMTSDAQQALRRIM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E Y R IL AN +S +I I+SR + +R + +++ L I + EG+ +
Sbjct: 125 EIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKASDDAL 184
Query: 145 LRLAQQSDRNLRRAI 159
+ + + ++R+AI
Sbjct: 185 ETIFEFTQGDMRKAI 199
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 92/209 (44%), Gaps = 51/209 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + H + L N ++G PHLLF+GP G GK + IMA+ + LYG
Sbjct: 9 WVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGSH 68
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 69 RHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMT 128
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
AQ +LRR ME Y + R L N M+++IP I+SRC R P ++ + +I K
Sbjct: 129 NAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAK 188
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMC 162
EGLT+ LA+ ++RR +L C
Sbjct: 189 AEGLTVSECALDTLAEIGQGDMRR-VLNC 216
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 39/199 (19%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62
V+KYRPN L ++ H N + ++ G PHLL YGP G GK + ++AL + LYGP
Sbjct: 33 VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPPY 92
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
++IL+E D +T+ AQ ALRR +E
Sbjct: 93 QKHILELNASDDRGIDVVRDQIKSFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIE 152
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
+ R + N ++++ PAI+SRC R +E+ + ++ +KEG+ + +
Sbjct: 153 THTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDDVVEKEGVNLTDDGRA 212
Query: 146 RLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 213 ALLKLSKGDMRRALNVLQA 231
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP L + + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 5 LWAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYGE 64
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++L+E D++T +AQQALRRT
Sbjct: 65 NYDQFFLELNASDENGINVIRTKVKDFARTVTPGNVPFKTVLLDEADNMTSDAQQALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL N +S++I I+SR R E+++ L NI K+E + +
Sbjct: 125 MELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQYDVKS 184
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + ++R+AI + +A+
Sbjct: 185 LEVVYDVTGGDMRKAINVLQAA 206
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + N L+ L + PH+LFYGP G GK + ++AL +ELYGP
Sbjct: 22 WVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGPD 81
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 82 LIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSMT 141
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R ++ V L I +
Sbjct: 142 YDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQRLRYIVQ 201
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+E L + + L S+ +LRRAI +++
Sbjct: 202 QEELNVDEDVFSYLLTISNGDLRRAITYLQSA 233
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 97/210 (46%), Gaps = 49/210 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGPV
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPV 94
Query: 64 -----------------------------------------------IILNETDHLTREA 76
IIL+E D +T A
Sbjct: 95 LYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTPPA 154
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKE 135
Q ALRRTMEK T R L N +S++I + SRC R P H + +L +IC+KE
Sbjct: 155 QAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNHIQETRLL-DICEKE 213
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L E L + S+ +LR+AI +++
Sbjct: 214 NLKYSKEGISALVRVSEGDLRKAITFLQSA 243
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + +KE PHLLFYGP G GK + I+A K++Y P
Sbjct: 12 WVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 72 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N + ++IPA++SRC R ++IV L I EG+ +
Sbjct: 132 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 191
Query: 144 ALRLAQQSDRNLRRAI 159
L S ++R+ +
Sbjct: 192 MKALLTLSGGDMRKVL 207
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + LR+ ++ D PHLLF GP+G GK T A+ + LYG
Sbjct: 18 IWIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGD 77
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 78 DWRGNFLELNASDERGIDVVRDRIKNFARSSFNPERGYTIIFLDEADSLTNDAQSALRRT 137
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME++ R IL N S++I I+SRC R + I +I + EG+ +
Sbjct: 138 MEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGIELTEGG 197
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 198 LDALVYAAGGDMRRAINSLQAA 219
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 97/235 (41%), Gaps = 56/235 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + ++ PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGSK 106
Query: 63 --------------------------------------------------VIILNETDHL 72
+IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T AQ ALRR MEKY R + AN ++ PA+ SRC R ++I ++ +
Sbjct: 167 TSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQVI 226
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI-----DQQIVEPD 182
+KE + I PE L S ++RRA+ + +A P I DQ + EP+
Sbjct: 227 EKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPEPE 281
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ K+E + + +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++RRA+ + +++ +
Sbjct: 202 MKALVTLASGDMRRALNILQSTNM 225
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP +L ++ + L++ +++ + PHLLF G G GK + +AL EL+
Sbjct: 14 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELF 73
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G ++ L+E D LT EAQ ALR
Sbjct: 74 GDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALR 133
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y T R I N S++IP I+SR + +R E I L I K EG I
Sbjct: 134 RTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDE 193
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
E L + S ++R+AI + +A
Sbjct: 194 ESMHALVEVSAGDMRKAINVLQA 216
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 100/224 (44%), Gaps = 51/224 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGPV
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPV 94
Query: 64 -----------------------------------------------IILNETDHLTREA 76
IIL+E D +T A
Sbjct: 95 LYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKPCPPFKIIILDEADSMTPPA 154
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R ++ L IC+KE
Sbjct: 155 QAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEERLLAICEKEN 214
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L E L + S+ +LR+AI +++ +D++I E
Sbjct: 215 LKYSGESVSALVRVSEGDLRKAITFLQSAA----RLSVDKEISE 254
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 41/203 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP ++ D +A LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRVFDEVVDLEEVKA-RLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R + L +I K EG+ + +
Sbjct: 124 IMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGIELRDD 183
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + + +
Sbjct: 184 AIDLIYEVSEGDMRKAINLLQVA 206
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ H ++ ++EG PHLLF+GP G GK T I+A+ +++YG
Sbjct: 19 WVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKN 78
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
++IL+E D +T AQ ALRR +
Sbjct: 79 YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQNALRRII 138
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + I L ++ ++E + + PE
Sbjct: 139 EKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAF 198
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L S ++RRA+ + +A
Sbjct: 199 QSLLHLSSGDMRRALNVLQA 218
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 23 WVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 82
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 83 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 142
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + + +
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDVSEDG 202
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 203 MKALITLSSGDMRRALNILQSTSM 226
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L L H + + + E PHLL YGP G GK + I+A K+LY P
Sbjct: 14 WVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYTPQ 73
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 74 QFNSMVLELNASDDRGIGIVRGQILSFASTGTMYRSGYKLIILDEADAMTNDAQNALRRI 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R E+I+ L ++ +E +T+ +
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITEENVTVTEDG 193
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L S ++R+ I + +++
Sbjct: 194 KKALMTLSGGDMRKVINVLQST 215
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 41/202 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + ++N + + PHLLFYGP G GK + I+A+ ++++GP
Sbjct: 25 WVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFGPQ 84
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+I+L+E D +T+ AQ ALRR
Sbjct: 85 FRNSVLELNASDDRGIEVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRR 144
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+E+Y R + N ++++IPAI+SRC R +++ L ++ EG I +
Sbjct: 145 VIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIDTEGCKITQD 204
Query: 143 FALRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 205 GKEALLKLSRGDMRRALNVLQA 226
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 53/221 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN L+ + H + + + + PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVK 106
Query: 62 -------------------------------------------------PVIILNETDHL 72
+IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-I 131
T AQ ALRR MEKY R + AN ++ PA+ SRC R +P EE + VL + +
Sbjct: 167 TATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRF-SPLKEEDIRVLVDQV 225
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+KE + I PE L Q S ++RRA+ + +A P
Sbjct: 226 VEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHASSIPL 266
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 110/256 (42%), Gaps = 59/256 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + + L+ L+ + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 36 WVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPE 95
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 96 LMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPYKIIILDEADSMT 155
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R E L I K
Sbjct: 156 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEENAKLRLEEIAK 215
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD-WKIYIRDTAK 192
E + L + S+ +LR+AI +++ P I+ P KI ++ +
Sbjct: 216 MENVEYEDGVIDALIKVSEGDLRKAITYLQSAARLHNP------IIRPKPKKITVKSIQE 269
Query: 193 L--IISEQSPKKLLEV 206
+ +I +Q+ KLLE
Sbjct: 270 IAGVIPDQTIDKLLEA 285
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + + E PHLLFYGP G GK + I+A ++LY P
Sbjct: 14 WVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTPA 73
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 74 QFNSMVLEMNASDDRGINIVRGQILSFASTGTMYRSGFKLIILDEADAMTNDAQNALRRI 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + ++I+ L I K+E L + +
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDG 193
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L S ++R+ + + +++
Sbjct: 194 KQALITLSGGDMRKVLNVLQST 215
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + + + LR L GD PHLLFYGP G GK + I+A K+L+G +
Sbjct: 33 WVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDI 92
Query: 64 ----------------------------------------------IILNETDHLTREAQ 77
+IL+E D +T AQ
Sbjct: 93 SRDRVLELNASDERGIQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQ 152
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME+ T R L N +S++IP I SRC R E ++ L IC+ E +
Sbjct: 153 AALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENV 212
Query: 138 TIPPEFALRLAQQS-DRNLRRAI 159
+ L A + + +LRRA+
Sbjct: 213 DVGEGEILNQAVDTCEGDLRRAL 235
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 43/198 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +L+G
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGVL 70
Query: 62 ---------------------------------------PVIILNETDHLTREAQQALRR 82
+IIL+E D +T +AQ ALRR
Sbjct: 71 ELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRR 130
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKEGLTIPP 141
TME Y R N +S++I + SRC R P EEI+S + +ICK+E L +
Sbjct: 131 TMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEIMSSRILHICKEEELNLDS 189
Query: 142 EFALRLAQQSDRNLRRAI 159
E L+ S +LRRAI
Sbjct: 190 EALSTLSSISQGDLRRAI 207
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 91/212 (42%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 36 WVEKYRPKKLSDVTAQDHTITVLERTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 96 LMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKSRYPCPPFKIIILDEADSMT 155
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L +I K
Sbjct: 156 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEDIAK 215
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ I L + SD +LR+AI +++
Sbjct: 216 LEGVPIDDGAVDALIKCSDGDLRKAITFLQSA 247
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 47/223 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPD 94
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 95 LYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAA 154
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R ++ + IC+KE
Sbjct: 155 QAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKEN 214
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L E L + S+ +LR+AI ++ +I +Q +
Sbjct: 215 LKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTI 257
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV++YRP ++ ++ N LR L + PH+LFYGP G GK + I+AL ++LYGP
Sbjct: 9 WVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLYGPE 68
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T++AQ
Sbjct: 69 LMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPDYPSPPYKIVILDEADSMTQDAQ 128
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRR ME+Y R L N ++++I + SRC R + L +I + EGL
Sbjct: 129 GALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIAQMEGL 188
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
+ P+ L + S+ ++RR+I
Sbjct: 189 RLNPDLVPVLIRSSEGDMRRSI 210
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN + + + + L+ + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 14 WVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPN 73
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 74 SKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGQHKIVILDEADSMTSGAQQALRRT 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 134 MEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVGAEQVPYVPEG 193
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 194 LEAIIFTADGDMRQALNNLQAT 215
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W++KYRP + ++ + + L+ + +EG+ P+++ GP G GK T I+ L +L GP
Sbjct: 21 WLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLGPT 80
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 81 YKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRT 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N S++I I+SRC +R + +I+S L +C+KEG+T E
Sbjct: 141 MEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEKEGVTYNDEG 200
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L +D ++R+A+ +A+
Sbjct: 201 MEALIFTADGDMRQALNNLQAT 222
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + + +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDVSEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 136/325 (41%), Gaps = 64/325 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + + L+ L+ D P+LLFYGP G GK + I+AL +EL+G
Sbjct: 68 WVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFGDM 127
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T AQ
Sbjct: 128 YKSRILELNASDERGIQVVREKIKTFSQLTASGTGPDGKPCPPYKIVILDEADSMTASAQ 187
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK T R L N +S++I + SRC R + ++ L NIC E +
Sbjct: 188 AALRRTMEKETKTTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNICTAEAV 247
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE 197
+ L + ++RRAI + ++ + ++Q+ D + + A +I ++
Sbjct: 248 QCDDQVLDFLMDACEGDMRRAITLFQSVSR----LKCNEQVTSED----VAEVAGIIPNQ 299
Query: 198 QSPKKLLEVRTRLYE--------LLVHSIPVNVLFKYLLEGLLANCDSDLKSKS--IEMA 247
L + YE L++ + LF L + ++ + D K KS E
Sbjct: 300 WVDGLLTSCASNSYEKLSATVEDLVLEGFAASQLFSQLHDAIVLSNKYDDKQKSAIAEKL 359
Query: 248 AMFEHRIHKGSKPIFHIEAYVASFM 272
A+ +HR+ +G+ I + M
Sbjct: 360 AICDHRLLEGADEYLQIMDLCVTIM 384
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + + ++ L+KE FPH+LFYGP G GK + I+A+ +++YG
Sbjct: 16 WVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMYGAS 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T++AQ ALRR +
Sbjct: 76 LRSMVLELNASDDRGIGIVREQIVDFASTKTMFSNKFKLVILDECDAMTKDAQAALRRVI 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R L N ++++IPA++SRC R P + S L + E + +
Sbjct: 136 EKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSERVNMGDGGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
+ ++RR + + +A+
Sbjct: 196 DAVVTLGAGDMRRTLNILQAT 216
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 41/204 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W++KYRP L + + +R +KEG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 10 WIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYGTN 69
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 70 YRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 129
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTIPPEF 143
EKY R + AN ++ PA+ SRC R P PT + I + + E L + E
Sbjct: 130 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPT-DAIEKRVNKVLILENLKLSREA 188
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + S ++RRA+ + +ASK
Sbjct: 189 FTALLRLSKGDMRRALNVLQASKA 212
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 92/205 (44%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ G PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+I+L+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + I ++
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRF-KPLSEEIMSSRILYISQE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL + E L+ S +LRRAI
Sbjct: 190 EGLCLDAEALSTLSSISHGDLRRAI 214
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ +E + + +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNM 224
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L L H + +KE PHLLFYGP G GK + I+A K+LY P
Sbjct: 10 WVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTPA 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 70 QFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSGFKLIILDEADAMTNDAQNALRRI 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R ++I+ L + ++E + + +
Sbjct: 130 IEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVVEQEKVKVTEDG 189
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L + ++R+ + + +++
Sbjct: 190 KKALIDLAQGDMRKVLNILQSA 211
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 93/220 (42%), Gaps = 51/220 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + ++ PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNTLDDVSGHQDILTTINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGTS 106
Query: 63 --------------------------------------------------VIILNETDHL 72
+IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLASYKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T AQ ALRR MEKY R + AN ++ PA+ SRC R ++I S++ ++
Sbjct: 167 TSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDHVI 226
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+KE + I PE L + S ++RRA+ + +A P
Sbjct: 227 EKEQVQIQPEAVSSLVKLSKGDMRRALNVLQACHASSKPL 266
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 101/226 (44%), Gaps = 50/226 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 33 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPE 92
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 93 LYRQRVLELNASDERGIQVVREKVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPA 152
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + L IC+KE
Sbjct: 153 QAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEKEN 212
Query: 137 LTIPPEFALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVE 180
L E L Q S+ +LR+AI L C A+++ D+ IVE
Sbjct: 213 LKYTRESIEALVQVSEGDLRKAITFLQC-AARLNMDKEITDRAIVE 257
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNM 224
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 41/203 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL +L H + + E PHLL YGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTPA 72
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+IIL+E D +T +AQ ALRR
Sbjct: 73 QFNSMVVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADAMTIDAQNALRR 132
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+EKY R + N +S++IPA++SRC R E+I+ L ++ + E L + +
Sbjct: 133 IIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLNVTED 192
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
L S ++R+ I + +++
Sbjct: 193 GKQALMTLSGGDMRKVISVLQST 215
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 88/203 (43%), Gaps = 47/203 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + + + LR L GD PHLLFYGP G GK + I+A ++L+G +
Sbjct: 32 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDI 91
Query: 64 ----------------------------------------------IILNETDHLTREAQ 77
+IL+E D +T AQ
Sbjct: 92 TRERVLELNASDERGIQVIRDKVKTFAQLTVSNTRPDGRPCPPYKLVILDEADSMTTAAQ 151
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME+ T R L N +S++IP I SRC R E ++ L +CK E +
Sbjct: 152 AALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLQEVCKSEAV 211
Query: 138 TIPPEFALRLAQQS-DRNLRRAI 159
+ L A + +LRRA+
Sbjct: 212 EVGDGEVLHQAVDTCGGDLRRAL 234
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + LR L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 37 WVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKELYGPE 96
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 97 LMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDEADSMT 156
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R L++I +
Sbjct: 157 HDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRLSSIAE 216
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ L + +D +LR+AI +++
Sbjct: 217 AEGVKYQEGVVDTLIKVADGDLRKAITFLQSA 248
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALITLSSGDMRRALNILQSTNM 224
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + L + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 15 WVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPS 74
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 75 YRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRT 134
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 135 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYAPEG 194
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 195 LEAIIFTADGDMRQALNNLQAT 216
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 141/327 (43%), Gaps = 58/327 (17%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
++ WV+KYRP N+ + + N +R ++ GDFP++LFYGP G GK + I A ++++
Sbjct: 32 LTPWVEKYRPKNVNDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMF 91
Query: 61 GP----------------------------------------------VIILNETDHLTR 74
G +IIL+E D +T
Sbjct: 92 GSMYKDRILELNASDDRGIQVVREKIKSFALRRANPNGPDGKKCPPFKIIILDEADSMTG 151
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
AQ ALRR MEK + R L N +S++I I SRC R + E+ ++ L IC +
Sbjct: 152 AAQTALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSIARLEYICNE 211
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEAS----KVQQYPFQIDQQIVEPDWKIYIRDT 190
E L ++ + S +LR+A+ MC S K + Y D + D I D
Sbjct: 212 ENLKADKSVLEKIVEASGGDLRQAV-MCLQSITRLKGKDYEITADDAL---DVIGLIPDE 267
Query: 191 AKLIISEQSPK-KLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSI--EMA 247
I+ E K + V+ L LL+ P + + L E ++ + + K K+I ++
Sbjct: 268 QINILWEACKKGNYINVQKSLENLLLEGYPGAKVIEQLNERIIFSDELTDKQKAIIGDVL 327
Query: 248 AMFEHRIHKGSKPIFH-IEAYVASFMA 273
+ R+ +GS + + + MA
Sbjct: 328 GECDFRLTEGSDEYIQLLNVFSTTLMA 354
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L N +R L+ PHLLFYGP G GK T I+A K LY P
Sbjct: 15 WVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLYTPA 74
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 75 QFASMVLELNASDDRGIGTVRGAILDFASTKTMFQGGVKLIILDEADAMTHDAQNALRRI 134
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEKY R + N + ++IPAI+SRC R +EI+ L + ++E + I +
Sbjct: 135 MEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQEKIKISDDG 194
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ ++R+ + + +++ V
Sbjct: 195 KQAVLTLGQGDMRKVLNILQSTFV 218
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + + + FPHLLFYGP G GK + I+A ++LY P
Sbjct: 10 WVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEPK 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 70 EFSSMVLELNASDDRGIGIVRGEILNFASTRTIFNKKFKLIILDEADAMTHDAQNALRRV 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IP ++SRC R + ++V + + K E + I P
Sbjct: 130 IEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKTEDVPITPAG 189
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ ++ ++R+++ + +AS
Sbjct: 190 KQAIVDLAEGDMRKSLNILQAS 211
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 47/209 (22%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L + L + +K G+ PHLLF G +G GK T + L +E +G
Sbjct: 6 TIWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 DSWQMNFRELNASDERGIDVVRNQIKEFARTRPAGDAAFKILFLDEADALTTDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI----PAPTHEEIVSVLTNICKKEGLT 138
TME Y TCR IL N S++I I+SRC R P EEI T I +E L
Sbjct: 126 TMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEI----TRIAAREHLD 181
Query: 139 IPPEFALRLAQQSDRNLRRAILMCEASKV 167
+ PE + + ++R+AI + + +
Sbjct: 182 VTPEAMDAMVYIAQGDMRKAINALQGAAI 210
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 47/208 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
++ WV+KYRP N+ + + N +R ++ GDFP++LFYGP G GK + I A ++++
Sbjct: 64 LTPWVEKYRPRNVDDIVEQTEVVNVIRQAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMF 123
Query: 61 GP----------------------------------------------VIILNETDHLTR 74
G ++IL+E D +T
Sbjct: 124 GSMYKDRILELNASDDRGIQVVRDKIKSFALRRANPNGPDGKKCPPFKIVILDEADSMTG 183
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
AQ ALRR MEK + R L N +S++I I SRC R T E+ ++ L IC +
Sbjct: 184 AAQTALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLTDEKSIARLEYICNE 243
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMC 162
E L ++ Q S +LR+A+ MC
Sbjct: 244 ENLKADRSVLEKIVQASGGDLRQAV-MC 270
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + + L + ++G+ P+L+ GP G GK T I+AL E+ GP
Sbjct: 20 WVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGPS 79
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 80 YREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRT 139
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 140 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEKVPYVPEG 199
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 200 LEAIIFTADGDMRQALNNLQAT 221
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 42 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 101
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 102 EFGSMVLELNASDDRGIEIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 161
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + + +
Sbjct: 162 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDLSEDG 221
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 222 MKALVTLSSGDMRRALNILQSTNM 245
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 41/203 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYGP
Sbjct: 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+++L+E D +T++AQ ALRR
Sbjct: 101 YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRR 160
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+EKY + R L N ++++IPA++SRC R + L ++ + EGL +
Sbjct: 161 VIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSDC 220
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
L + S+ ++R+A+ + +++
Sbjct: 221 GLAALVRLSNGDMRKALNILQST 243
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + +KE PHLLFYGP G GK + I+A +++Y P
Sbjct: 10 WVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSPK 69
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I+L+E D +T +AQ ALRR
Sbjct: 70 EFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTGFKLIVLDEADAMTNDAQNALRRV 129
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T ++ + ++ +E LT+ +
Sbjct: 130 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVITQERLTVTADG 189
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++R+A+ + +++ +
Sbjct: 190 KKALMDLAQGDMRKALNILQSTSM 213
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 48/219 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 40 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 99
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+++L+E D +T++AQ ALR
Sbjct: 100 YQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALR 159
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R L N ++++IPA++SRC R + L ++ K EGL +
Sbjct: 160 RVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVED 219
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
+ S+ ++R+A+ + +++ + QQI E
Sbjct: 220 SGLAAFVRLSNGDMRKALNILQSTHMAS------QQITE 252
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 141/326 (43%), Gaps = 75/326 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L L H + + + + + PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSPA 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 HFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + E+++ L + ++E + I +
Sbjct: 133 IEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEEENVNITDDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQ-------------QYPFQID-QQIVEPDWKIYIRD 189
L + ++R+ + + +++ + YP + + + +++ D
Sbjct: 193 KKALLTLAKGDMRKVLNVLQSTSMAFDVVNEDNVYMCVGYPLRSEIENVLQTLLSAATFD 252
Query: 190 TAKLIISEQSPKKLL---EVRTRLYELLVH-SIPVNVLFKYLLEGLLANCDSDLKSKSIE 245
+A I E K+ L ++ T L+ ++ +P++V+ K +++
Sbjct: 253 SAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIK---------------- 296
Query: 246 MAAMFEHRIHKGSKPIFHIEAYVASF 271
A E R+ KG A V++F
Sbjct: 297 -LAEIEERLTKGCSETAQTAALVSAF 321
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP + +L H + ++ L E PHLLFYGP G GK + I+A + LY
Sbjct: 12 WVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYADR 71
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GPV +IL+E D +T +AQ ALRR
Sbjct: 72 EFNSMVLELNASDDRGIGIVRGPVLQFASTRTIFKRGFKLVILDEADAMTGDAQNALRRV 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEK+ R L N +S++IPAI+SRC R ++++ L ++ ++E + + +
Sbjct: 132 MEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVIQEEKVDVTDDG 191
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ Q ++ ++RR + + +++ +
Sbjct: 192 KKAILQLANGDMRRVLNILQSTSM 215
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + L + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 15 WVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPS 74
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 75 YRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRT 134
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 135 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYAPEG 194
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 195 LEAIIFTADGDMRQALNNLQAT 216
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 59/264 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + ++ PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGSN 106
Query: 63 ---------------------------------------------------VIILNETDH 71
+IIL+E D
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEADA 166
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131
+T AQ ALRR ME+Y R + AN ++ PA+ SRC R ++I S++ +
Sbjct: 167 MTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDQV 226
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI-----DQQIVEPDWKIY 186
+KE + I PE L + S ++RRA+ + +A P + D+ EP+ I
Sbjct: 227 IEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQACHASSRPLPMKNATNDEPQSEPE--II 284
Query: 187 IRDTAKLIISEQSPKKLLEVRTRL 210
+T I+ P + E+ T L
Sbjct: 285 TNETIYDCIAAPHPSDIQEIMTTL 308
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 143/337 (42%), Gaps = 74/337 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
W++KYRP + + LR + G PHLLFYGP G GK + I+A+ +ELYG
Sbjct: 12 WIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELYGND 71
Query: 62 ------------------------------------------PVIILNETDHLTREAQQA 79
+I+L+E D +T +AQ A
Sbjct: 72 FRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSESMPAFKIIVLDEADSMTNDAQSA 131
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI 139
LRR ME Y R L N +S++I I SRC+ R T E + + L+ I +E L +
Sbjct: 132 LRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYIGSQENLRL 191
Query: 140 PPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199
+ L ++ +LR+AI + ++++ + +IV ++ +
Sbjct: 192 DDDIIDTLLDCANGDLRKAINLMQSARQTGGKELTNDEIV--------------AVAGLA 237
Query: 200 PKKLLE-------------VRTRLYELLVHSIPVNVLFKYLLEGLLANCD-SDL-KSKSI 244
PK+LLE +RT + +L+ P + L E ++ + SD+ K++S
Sbjct: 238 PKELLENFWKAIAGNSFDSMRTEIESILLSGYPTLTILHQLSEDIMKRSELSDIQKARSC 297
Query: 245 EMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
A + ++ G+ F + V S++ Q M++
Sbjct: 298 LRIAEADSKLIDGASEYFQL-FDVGSYIMRQYQSMDN 333
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 90/212 (42%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 84 LSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSMT 143
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A +S L I
Sbjct: 144 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIAN 203
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+E L R+ S +LR+AI + +++
Sbjct: 204 EESLKYEDGVLERILDISQGDLRKAITLLQSA 235
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + + ++E PHLLFYGP G GK + I+A ++LY P
Sbjct: 11 WVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYKPQ 70
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 71 SFNQMVLELNASDDRGINIVRNQILNFASTRTIFSGGYKLIILDEADAMTNDAQNALRRI 130
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + ++I+ L ++ EG+ + +
Sbjct: 131 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIKVSDDG 190
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L + ++R+ + + +++
Sbjct: 191 KKALMTLAGGDMRKVLNVLQST 212
>gi|389615147|dbj|BAM20564.1| replication factor C subunit 3 [Papilio polytes]
Length = 184
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 80/172 (46%), Gaps = 40/172 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV KYRP+ L+ L H + +KE PHLLFYGP G GK + I+A +++Y P
Sbjct: 12 WVXKYRPSKLEXLVSHDDIIKTIGQFMKENQLPHLLFYGPPGTGKTSTILACARQMYTPQ 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 72 QFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
+EKY R + N + ++IPA++SRC R H +IV L +I +KE
Sbjct: 132 IEKYTDNVRFCIICNYLGKIIPALQSRCTRFRFAPLQHAQIVPRLRDIVEKE 183
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 39/172 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L + + + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 9 LWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 69 NYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVVLLDEADNMTADAQQALRRT 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
ME Y R IL N +S++I I+SR R E++V+ L I K E
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL+ + H + L + PH+LFYGP G GK + I+A +++YGP
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN 84
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 85 YRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVI 144
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + N ++++ PAI+SRC R +EI + ++ + E I P+
Sbjct: 145 EKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAK 204
Query: 145 LRLAQQSDRNLRRAILMCEA 164
+ + + S ++R+A+ + +A
Sbjct: 205 MAVLRLSKGDMRKALNILQA 224
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 50/215 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KELY
Sbjct: 32 MQPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 61 GP--------------------------------------------------VIILNETD 70
GP +IIL+E D
Sbjct: 92 GPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEAD 151
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME Y R L N ++++I + SRC R + V +
Sbjct: 152 SMTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVKE 211
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
I KEG+ + L + S+ +LR+AI +++
Sbjct: 212 IADKEGVKLEEGAVEALIRCSEGDLRKAITYLQSA 246
>gi|412990439|emb|CCO19757.1| replication factor C small subunit [Bathycoccus prasinos]
Length = 341
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 40/216 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP +L ++ H +R L + PHLL YGP G GK + I+AL +ELY
Sbjct: 24 MWVEKYRPKSLDEIAAHADIVATIRQLTHDKKLPHLLLYGPPGTGKTSIILALARELYST 83
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E+D +T++AQ ALRR
Sbjct: 84 SFTQMALELNASDERGIDVVREEIQAFASTLRASSFGFKLVILDESDSMTKDAQFALRRI 143
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+E+Y R L N S++IPA++SRC R+ A E+I + + + E L I E
Sbjct: 144 IERYTKYTRFCLICNFPSKIIPALQSRCTKFRLEALQFEDIRNKIQLVSSAENLKITEEG 203
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L + + ++R+++ + +++ + ID+ +V
Sbjct: 204 ILAVCRVGCGDMRKSLNILQSAHLASKDV-IDEDLV 238
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 39/172 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L + + + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 9 LWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 69 NYVEYFLELNASDERGIDVIRNKVKEFARTVIPGNVPFKVVLLDEADNMTADAQQALRRT 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
ME Y R IL N +S++I I+SR R E++V+ L I K E
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 42/208 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYGP
Sbjct: 11 WVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGPQ 70
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+IIL+E D +T++AQ +LR
Sbjct: 71 FQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIILDEADAMTKDAQFSLR 130
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY R L N +S++IPA++SRC R P + + L + +E L +
Sbjct: 131 RIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQERLDVTE 190
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQ 169
+ + + S+ ++R+A+ + +++++ +
Sbjct: 191 DGLSAIVRLSNGDMRKALNILQSTQMAE 218
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 51/213 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KEL+GP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPE 95
Query: 63 --------------------------------------------------VIILNETDHL 72
+IIL+E D +
Sbjct: 96 LMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCPPFKIIILDEADSM 155
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T++AQ ALRRTME Y R L N ++++I + SRC R + + L +I
Sbjct: 156 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKARLEHIA 215
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+KE + + P L + S+ +LR+AI +++
Sbjct: 216 EKECVALEPGAVDALIKSSEGDLRKAITFLQSA 248
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 43/219 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + + ++ +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDK 74
Query: 63 ------------------------------------------VIILNETDHLTREAQQAL 80
+IIL+E DH+T AQ A+
Sbjct: 75 RSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAM 134
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
RR ME Y R L N ++++ PAI+SRC R E + + +I K E + +
Sbjct: 135 RRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLT 194
Query: 141 PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
L + ++RR + + + ID+ ++
Sbjct: 195 EGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVI 233
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 50/258 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + LR+ +++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGFDYRIIFLDEADSLTSDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + +I + E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEIELTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQS 199
L + ++RRAI +A+ +IV+ + I TA+ ++
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATT-------GEIVDEEAVYLITSTARPEDIEEMVQSAI 248
Query: 200 PKKLLEVRTRLYELLVHS 217
+ L R++L LLV +
Sbjct: 249 DGEFLTARSKLETLLVDT 266
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 48/221 (21%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
S WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ +++YG
Sbjct: 35 SPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYG 94
Query: 62 P------------------------------------------VIILNETDHLTREAQQA 79
+++L+E D +T++AQ A
Sbjct: 95 SQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKDAQFA 154
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI 139
LRR +EKY + R L N ++++IPA++SRC R + L +I K EGL +
Sbjct: 155 LRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLQHIIKSEGLDV 214
Query: 140 PPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L + S ++R+A+ + +++ + QQI E
Sbjct: 215 DEGGLTALVRLSSGDMRKALNILQSTHMAS------QQITE 249
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 44/187 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + H L+ + PHLLFYGP G GK T +A++K++ GP
Sbjct: 9 WVEKYRPTTISGVQGHEYILESLQQFISANQLPHLLFYGPPGTGKTTTALAIVKQICGPK 68
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
I+L+E+D LT++AQ ALRRT+
Sbjct: 69 YTALVLELNASDERGINVVREQIKSFASTRTLYTNCTKFIVLDESDKLTKDAQNALRRTL 128
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y CR + N ++ + PAI+SRC R + E + ++ +I +E + + +
Sbjct: 129 EQYSGNCRFVFICNEVNLITPAIQSRCAKFRFGPLSPEALKKIMKHITDEEKMVVDED-- 186
Query: 145 LRLAQQS 151
AQQS
Sbjct: 187 ---AQQS 190
>gi|402466719|gb|EJW02155.1| hypothetical protein EDEG_03399 [Edhazardia aedis USNM 41457]
Length = 354
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 122/222 (54%), Gaps = 10/222 (4%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
I++N+ D L+++AQ ALRRT+E+Y T RLI+ M+ +I +RSRCL IR+P + E
Sbjct: 132 IVINDADELSKDAQAALRRTVERYSTNFRLIMICEEMNTIIEPLRSRCLLIRVPGFSELE 191
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE--ASKVQQYPFQIDQQIVEP 181
I L +I +E TI + L + + + ++R+A+ + E A Q + +++
Sbjct: 192 IEDFLKDILIREQSTIDHKTMLDIIKAARGSMRKALCLAENFALFAQSDDNKRSKRLKAA 251
Query: 182 DWKIYIRDTAKLIIS-----EQSP--KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
+ + K+I S +++P + +R LY L+ IP ++ + +++ L+A
Sbjct: 252 ENPYIFLEYEKIINSIVFDIKKNPGSNTIYSIRKDLYTLISGCIPPKMILRAMIKRLIAE 311
Query: 235 CDSDLKSKSI-EMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ + I E ++++ R+ GSK I H+EA+V S M++Y
Sbjct: 312 SRTFESVRKICEYGSLYDERMKMGSKEIIHLEAFVVSVMSIY 353
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNL-LKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
LWV+KYRP + + +H L++ LK PHLL +G G GKKT I + ++
Sbjct: 2 LWVEKYRPKSFDETKYHTNLVEILKSYSLK--SVPHLLVHGGPGHGKKTLIQNFINNIH 58
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 56/212 (26%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ G+ PHLLFYGP G GK + +A+ +EL+GP
Sbjct: 7 WVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQ 66
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
VIIL+E D +T +AQ
Sbjct: 67 LYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGVSDYPCPPFKVIILDEADSMTEDAQ 126
Query: 78 QALRRTMEKYITTCRLILCANSMS----------QVIPAIRSRCLCIRIPAPTHEEIVSV 127
ALRRTME Y R N +S ++I + SRC R + + +
Sbjct: 127 NALRRTMETYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFRFKSLNQDVMHGR 186
Query: 128 LTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+ +IC +EG+ + E L++ S+ +LRRAI
Sbjct: 187 ILHICSEEGVQMGSEALATLSRVSEGDLRRAI 218
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 51/220 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN+L + H + + PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGVK 106
Query: 62 -------------------------------------PV------------IILNETDHL 72
PV IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T AQ ALRR MEKY R + AN ++ PA+ SRC R ++I +++ +
Sbjct: 167 TATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQVI 226
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+KE + I PE L + S ++RRA+ + +A P
Sbjct: 227 EKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPL 266
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A L +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 7 FWFEKYRPKSFAEIVDLEEIKA-RLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYG 65
Query: 62 ---------------------------------------PVIILNETDHLTREAQQALRR 82
+++L+E D++T +AQQALRR
Sbjct: 66 ERWRENTLELNASDERGINVIRERVKEFARTAPAGGAPFKLVVLDEADNMTSDAQQALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y T R +L AN +S++I I SRC R P + L I +E + + +
Sbjct: 126 IMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERIKLTED 185
Query: 143 FALRLAQQSDRNLRRAI 159
+ + S ++RRAI
Sbjct: 186 GIDAIYEISQGDMRRAI 202
>gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 361
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 49/211 (23%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62
V+KYRP++L+++ + + +R ++ G PHLLFYGPSG GK + I+AL KE+YG
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ +LRR +EK+ CR + AN ++ PA+ SRC R I L + KE
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEASK 166
+ I PE L + S+ ++RRA+ + ++ K
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCK 236
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L +L H + ++ + E PHLL YGP G GK + I+A ++LY
Sbjct: 24 WVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKDK 83
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 84 EFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 143
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ +E + + +
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAEEKVDVSEDG 203
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 204 MKALVTLSSGDMRRALNILQSTNM 227
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 95/227 (41%), Gaps = 55/227 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L +K G+ PH+LFYGP G GK + I+AL KELYGP
Sbjct: 26 WVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPN 85
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 86 LYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSMT 145
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R +L N ++++I I SRC R +E L I +
Sbjct: 146 NDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQ 205
Query: 134 KEGLTIPPE-----FALRLAQQSDRNLRRAILMCEASKVQQYPFQID 175
+E L E L + S +LR+AI +++ F I+
Sbjct: 206 QENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDIN 252
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 64/317 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + + L+ L+ D P+LLFYGP G GK + I+AL +EL+G
Sbjct: 34 WVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALARELFGDM 93
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T AQ
Sbjct: 94 YKSRILELNASDERGIQVVREKIKTFSQLTAHAVGPDGKPCPPFKIVILDEADSMTASAQ 153
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I + SRC R E ++ L +IC EG+
Sbjct: 154 AALRRTMEKETKSTRFCLICNYISRIIDPLTSRCSKFRFKPLPKEVLLERLRSICTAEGV 213
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE 197
E L + ++RRAI + ++ + D+ + D + + A +I +
Sbjct: 214 QCEDEVLDFLMDACEGDMRRAITLFQSVS----RLKCDEPVTSHD----VAEVAGIISKK 265
Query: 198 QSPKKLLEVRTRLYE--------LLVHSIPVNVLFKYLLEGLLANCDSDLKSKS--IEMA 247
L + YE L++ + LF L + ++ + + + K KS E
Sbjct: 266 WIDDLLASCASNSYEKLSATVEDLVLEGFAASQLFSQLHDTIVLSTNYNDKQKSAITEKL 325
Query: 248 AMFEHRIHKGSKPIFHI 264
A+ +HR+ +G+ I
Sbjct: 326 AICDHRLLEGADEYLQI 342
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 46/208 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ + + L L+ + PH+LFYGP G GK T +A+ ++LYGP
Sbjct: 8 WVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQLYGPE 67
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T +AQ
Sbjct: 68 LIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAPGYPSPPYKILILDEADSMTNDAQ 127
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME Y R + N +S++I I SRC R HE + L I EGL
Sbjct: 128 SALRRTMETYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFIATAEGL 187
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEAS 165
T+ + S ++R+AI + +++
Sbjct: 188 TLGEGCYEACSTHSGGDMRKAITLLQSA 215
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 45/228 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + I + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK 192
L + ++RRAI +A+ ++V+ D I TA+
Sbjct: 196 DALVYAAGGDMRRAINSLQAAATT-------GEVVDEDAVYMITSTAR 236
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 51/220 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN+L + H + + PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGVK 106
Query: 62 -------------------------------------PV------------IILNETDHL 72
PV IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T AQ ALRR MEKY R + AN ++ PA+ SRC R ++I +++ +
Sbjct: 167 TATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQVI 226
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+KE + I PE L + S ++RRA+ + +A P
Sbjct: 227 EKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPL 266
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 59/264 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + ++ PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGSN 106
Query: 63 ---------------------------------------------------VIILNETDH 71
+IIL+E D
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEADA 166
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131
+T AQ ALRR ME+Y R + AN ++ PA+ SRC R ++I S++ +
Sbjct: 167 MTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDQV 226
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI-----DQQIVEPDWKIY 186
+KE + I PE L + S ++RRA+ + +A P + D+ EP+ I
Sbjct: 227 IEKEQIHIQPEAVSSLVRLSKGDMRRALNVLQACHASSKPLPMKNATKDEPQSEPE--II 284
Query: 187 IRDTAKLIISEQSPKKLLEVRTRL 210
+T I+ P + E+ T L
Sbjct: 285 TNETIYDCIAAPHPSDIQEIMTTL 308
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 39/172 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L + + + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 9 LWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 69 NYTEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRT 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
ME Y R IL N +S++I I+SR R E++V+ L I K E
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNE 180
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 94/209 (44%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPE 94
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
+IIL+E D +T A
Sbjct: 95 LYRQRVLELNASDERGIQVVRDKVKNFAQLTVAGTRPDGKSCPPFKIIILDEADSMTAPA 154
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R ++ L IC+KE
Sbjct: 155 QAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQIQEERLLEICEKEN 214
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L E L + S+ +LR+AI +++
Sbjct: 215 LKYTKESIAALVRVSEGDLRKAITFLQSA 243
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 92/218 (42%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 24 WVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGPN 83
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 84 LIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPCPPYKIIILDEADSMT 143
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L + +
Sbjct: 144 ADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKFVAQ 203
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + ++ + S +LRRAI L+ ASK Y
Sbjct: 204 EENVNYKENVLEKILEISSGDLRRAITLLQSASKTSTY 241
>gi|124803688|ref|XP_001347790.1| replication factor C subunit 5, putative [Plasmodium falciparum
3D7]
gi|23496041|gb|AAN35703.1|AE014837_45 replication factor C subunit 5, putative [Plasmodium falciparum
3D7]
Length = 349
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 17/199 (8%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+ + + + L+ AQ LRRT+E YI R+IL +S++I ++SRC+CIR+P P+ E
Sbjct: 128 IFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPSEE 187
Query: 123 EIVSVLTNICKKEGLTIPPEFAL-----RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
EI SVL NICK+E ++ P F+ L RNLR+ I+ E S
Sbjct: 188 EIYSVLQNICKQENVS--PSFSTYEYFQTLINTHGRNLRKCIMALEMSVYANSSKPHQSL 245
Query: 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF----KYLLEGLLA 233
V YI + + + K+ E T++ L+ IPVN +F KYLL G
Sbjct: 246 SVAAS---YINELCDFVFINPTQIKMKECVTKIQSLITCQIPVNFIFETTIKYLLRG--- 299
Query: 234 NCDSDLKSKSIEMAAMFEH 252
N D+ LK +++ + F +
Sbjct: 300 NYDAKLKYYFLKLCSHFSY 318
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+W++KY P ++ +L H LR L + D PH++FYG G GK TRI L+KE++
Sbjct: 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIF 58
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 135/315 (42%), Gaps = 69/315 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + + L+ L D P+LLFYGP G GK + I+AL +EL+G
Sbjct: 35 WVEKYRPKTVDDVAHQDEVVSVLKKSLLGADLPNLLFYGPPGTGKTSTILALSRELFGDM 94
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T AQ
Sbjct: 95 YKSRILELNASDERGIQVVREKIKNFSQLTANATRPDGRPCPPFKIVILDEADSMTPSAQ 154
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK T R L N +S++I + SRC R + ++ L IC E +
Sbjct: 155 AALRRTMEKQTKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTAENV 214
Query: 138 TIPPE---FALRLAQQSDRNLRRAILMCEA-SKVQQYPFQIDQQIVEPDWKIYIRDTAKL 193
E F L ++RRAI + ++ S++ ++ EP + + A +
Sbjct: 215 QCDDEAILFFFFLKSACLGDMRRAITLFQSVSRL---------KLGEPVLTEDVAEVACI 265
Query: 194 IISEQSPKKLLEVRTRLYELLVHSI--------PVNVLFKYLLEGLLANCDSDLKSKSI- 244
I + L + YE L +I P + LF L + L+A+ D D K KS+
Sbjct: 266 IPKSWVDRVLQTCASNSYEKLDQTIQDLVLEGYPASQLFNQLHDVLIASADYDDKQKSVI 325
Query: 245 -EMAAMFEHRIHKGS 258
E A+ +HR+ +G+
Sbjct: 326 MEKLAICDHRLLEGA 340
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 94/220 (42%), Gaps = 50/220 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L+ + H + + PHLLFYGP G GK + I+AL + +YGP
Sbjct: 47 WVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGPK 106
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T
Sbjct: 107 NMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEADAMTST 166
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-ICKK 134
AQ ALRR MEKY R + AN ++ PA+ SRC R +P E + VL + + +
Sbjct: 167 AQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRF-SPLKESDIRVLVDKVIME 225
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
E + I E L + S ++RRA+ + +A P I
Sbjct: 226 ENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHI 265
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 59/264 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + ++ PHLL YGP G GK + I+AL +++YG
Sbjct: 46 WVEKYRPNTLDDVSGHQDILATINRFIEANRLPHLLLYGPPGTGKTSTILALARKIYGSK 105
Query: 63 ---------------------------------------------------VIILNETDH 71
+IIL+E D
Sbjct: 106 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQSGSGSSSLASFKLIILDEADA 165
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131
+T AQ ALRR ME+Y R + AN ++ PA+ SRC R +I S++ +
Sbjct: 166 MTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRSLVDLV 225
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI-----DQQIVEPDWKIY 186
+KE + I PE L S ++RRA+ + +A P + DQ V P+ ++
Sbjct: 226 VEKEQINIQPEAVDSLVTLSKGDMRRALNVLQACHASSIPLPMKNAPKDQ--VRPEAEVI 283
Query: 187 IRDTAKLIISEQSPKKLLEVRTRL 210
+T I+ P + E+ T L
Sbjct: 284 TNETIYDCIAAPYPADIQEIMTTL 307
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L+ + H L + + D H+LF GP+G GK T A+ +ELYG
Sbjct: 14 VWIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYGE 73
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 74 DWEENFLELNASDERGIDVVRDRVKSFARTSFGGYDYRIIFLDEADALTADAQSALRRTM 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R E + + + I ++E + + +
Sbjct: 134 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVIDVTEDGI 193
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + ++R+AI +A+ +
Sbjct: 194 EALVYVAGGDMRKAINGLQAASM 216
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + + L + ++G+ P+L+ GP G GK T I+AL E+ GP
Sbjct: 18 WVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLGPS 77
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 78 YREGVLELNASDDRGLDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRT 137
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 138 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVAAEKVPYVPEG 197
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 198 LEAIIFTADGDMRQALNNLQAT 219
>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
Length = 328
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 47/260 (18%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62
V+KYRP L + H + + +R +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 1 VEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGDSR 60
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+IIL+E DH+T AQ A+R
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 120
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R ME Y R L N ++++ PAI+SRC R P E +++ +I K E + I
Sbjct: 121 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFPLK-EEYMLNKALDIAKSENVNITK 179
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI---ISEQ 198
L + ++RR + + + ID+ ++ I + K I +++
Sbjct: 180 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKS 239
Query: 199 SPKKLLEVRTRLYELLVHSI 218
+ K+ E+ T+L E +SI
Sbjct: 240 TIKESYEIITKLQEDKGYSI 259
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 50/211 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L+ + L+ L+ + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 25 WVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 85 LMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSMT 144
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R + ++ L I
Sbjct: 145 ADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIAS 204
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164
+E LT+ ++ S+ +LR+ I + ++
Sbjct: 205 EESLTLADGALDKILDISEGDLRKGITLLQS 235
>gi|357147528|ref|XP_003574379.1| PREDICTED: probable replication factor C subunit 3-like
[Brachypodium distachyon]
Length = 565
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 19/265 (7%)
Query: 1 MSLWVDKYRPNNLQ------KLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMA 54
++L D + P++L+ +++ + A H+ +K D + +K I
Sbjct: 233 LALLRDAFGPDDLKIEERPKRIELKGEIAKHIDIKIKSSDHHVEVNLADLHGYEKQVITT 292
Query: 55 LLKELYGP-----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103
LL E P VI++++ D ++ + Q + + +Y+ ++I C ++ S
Sbjct: 293 LLNESIPPPDSICDHTNCRVIVVHDADRISSDLQHYIGWFLGRYVGCSKIIFCCSNSSN- 351
Query: 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163
+ A++ C I + P+ +EI+ VL I KEG+ +P E A R+A + NLR+AI E
Sbjct: 352 LEAVKHLCKVITLLPPSFDEIIKVLEFIATKEGIYLPREIASRIATSASTNLRQAIRSFE 411
Query: 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVL 223
A+ YPF DQ I+ W+ I D AK I+ E SPK+L +R ++ +++ H++ +
Sbjct: 412 ATWKANYPFVEDQPILT-GWEEEIFDVAKKIMEEPSPKQLYLIRGKIRKMIEHNVSPYYI 470
Query: 224 FKYLLEGLLANCDSDLKSKSIEMAA 248
F +L+ L + D D ++ E+A+
Sbjct: 471 FCHLVTELKRDRDEDFQNSIDELAS 495
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W D YRP+ L + + A+ L L+ H +F G GKK+ ++ALL++ +GP
Sbjct: 183 VWADMYRPSVLGEFICNKAVADELHRLVTARQCNHFIFEGMQAVGKKSMVLALLRDAFGP 242
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + I + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + I + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + L+ L + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 26 WVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGPQ 85
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 86 LVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPCPPYKIIILDEADSMT 145
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y T R L N ++++I + SRC R A + L +
Sbjct: 146 ADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKYVAT 205
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164
+E ++ Q S +LRRAI + ++
Sbjct: 206 QESTKYEEGTLEKILQISAGDLRRAITLLQS 236
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALR
Sbjct: 82 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRGV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 96 LMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADSMT 155
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L I +
Sbjct: 156 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEIAR 215
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ + L + SD +LR+AI +++
Sbjct: 216 LEGVGMEDGAVDALIKCSDGDLRKAITFLQSA 247
>gi|390346342|ref|XP_795505.3| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 259
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 40/152 (26%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN+L L H + N ++ +K+ PHLLFYGP G GK + I+A+ K+LY P
Sbjct: 12 WVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPK 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T +AQ ALRR
Sbjct: 72 EFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADAMTNDAQNALRRV 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIR 115
+EK+ R N +S++IPA++SRC R
Sbjct: 132 IEKFTENTRFCFICNYLSKIIPALQSRCTRFR 163
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP ++ + + LR +L+ G+ PHLLFYGP G GK + +AL++EL+G
Sbjct: 33 WVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFGRE 92
Query: 62 ------------------------------------------------PVIILNETDHLT 73
++IL+E D +T
Sbjct: 93 EAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMPTWKIVILDEADMMT 152
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRR ME + T R I+ N + ++I I SRC R + + + +IC
Sbjct: 153 QDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARDAQEARIRHICD 212
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EGL + L + S +LRRA+ + +++
Sbjct: 213 SEGLVVTSGAVDALLRISQGDLRRAVTLLQSA 244
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ L+ + PH+LFYGP G GK + I+AL ++LYGP
Sbjct: 20 WVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGPR 79
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 80 LFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSMT 139
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRT+E Y R L N ++++I + SRC R ++ + + I +
Sbjct: 140 NDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQRIRYIVE 199
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
KE L + + L S+ +LR+AI +++
Sbjct: 200 KENLNVDEDVPETLLSMSNGDLRKAITFLQSA 231
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 50/220 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + + PHLLFYGP G GK + I+AL + +YG
Sbjct: 45 WVEKYRPATLADVSGHQDILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYGAE 104
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 105 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSASATRSGIANFKLIILDEADAMT 164
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
AQ ALRR MEKY R + AN ++ PA+ SRC R ++I ++ + +
Sbjct: 165 NTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRGLIDKVIE 224
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
+E + I PE L + S ++RRA+ + +A P Q
Sbjct: 225 EENVKIMPEATDSLVRLSKGDMRRALNVLQACHASSTPLQ 264
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 92/205 (44%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ G PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+I+L+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME Y R N +S++I + SRC R P EEI+S + I ++
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRF-KPLSEEIMSSRILYISQE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL + E L+ S +LRRAI
Sbjct: 190 EGLCLDAEALSTLSFISHGDLRRAI 214
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + +++ PHLLFYGP G GK + I+A+ + LYG
Sbjct: 30 WVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLYGAN 89
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T+ AQ ALRR +
Sbjct: 90 YKKQILELNASDDRGIDVVRDQIKGFAETRGVFAKGFKLIILDEADMMTQAAQAALRRVI 149
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + N ++++ PAI+SRC R E+ L + + EG+ + PE
Sbjct: 150 EQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVIENEGVKVSPEGK 209
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 210 EALLKLSRGDMRRALNVLQA 229
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 94
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 95 LIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEADSMT 154
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L I K
Sbjct: 155 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEEIAK 214
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ + L + S+ +LR+AI +++
Sbjct: 215 NEGVELEEGAVDALIKCSEGDLRKAITFLQSA 246
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 139/319 (43%), Gaps = 58/319 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQAN---HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
WV+KYRP QKLD Q + L+ ++E P+L+F GP+G GK T +AL +E+
Sbjct: 8 WVEKYRP---QKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREIL 64
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G +I L+E D++T++AQ ALRR
Sbjct: 65 GEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRR 124
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIR-IPAPTHEEIVSVLTNICKKEGLTIPP 141
ME Y T IL N S++I I+SRC R +P H +I+ L I +KE L
Sbjct: 125 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGH-QIIKRLEYIAEKENLEYEA 183
Query: 142 EFALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199
+ ++ +LR+AI L AS ++ +V +R K I+
Sbjct: 184 HALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILD--- 240
Query: 200 PKKLLEVRTRLYELLV-HSIP----VNVLFKYLLE-GLLANCDSDLKSKSIEMAAMFEHR 253
K +E R L E++V I V +++ L + D D I+ ++ R
Sbjct: 241 -GKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFR 299
Query: 254 IHKGSKPIFHIEAYVASFM 272
I +G+ P +EA +A F+
Sbjct: 300 IREGANPRIQLEALLARFL 318
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 41/202 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + ++N + + PHLLFYGP G GK + I+A+ +++YG
Sbjct: 25 WVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIYGAQ 84
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+I+L+E D +T+ AQ ALRR
Sbjct: 85 FRNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAGFKLIVLDEADAMTQAAQGALRR 144
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+E+Y R + N ++++IPAI+SRC R +++ S L ++ + E I P
Sbjct: 145 VIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQHVIESEHCNITPG 204
Query: 143 FALRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 205 GKEALLKLSRGDMRRALNVLQA 226
>gi|294889964|ref|XP_002773015.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239877718|gb|EER04831.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 274
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++N+ LTR+AQ ALRRTMEKY++ R I A +++ +IP +RSRCL IR+P PT
Sbjct: 128 VVVINDAHCLTRQAQAALRRTMEKYVSKIRFIFHAEALAPLIPPLRSRCLGIRVPRPTQI 187
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP- 181
E+ + I K+ L + R+ ++S+ ++R A++ + +++ +E
Sbjct: 188 ELQQEMMEISKRHDLGLNSGLCTRIVEESNCDVRLALIRLDTLRMKNACLSDANAPMEAL 247
Query: 182 DWKIYIRDTAKLIISEQSPKKLL 204
W++++ D AK I+ EQSP+++L
Sbjct: 248 SWQVFVEDIAKDIVMEQSPRRML 270
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 39/64 (60%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MS VD RP+ L +L FH LR L D PHLLFYGPSG GK TRI LL+ ++
Sbjct: 1 MSFLVDSERPHKLDELTFHPGLTKTLRKLAASKDCPHLLFYGPSGGGKITRIRCLLEAMF 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPGV 64
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + ++ G PHLL YGP G GK + ++AL + LYGP
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T+ AQ ALRR +
Sbjct: 116 YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVI 175
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R + N ++++ PAI+SRC R +EI + + +KEG+ + +
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 236 DALLKLSRGDMRRALNVLQA 255
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 34 WVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 93
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 94 MIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYPCPPFKIIILDEADSMT 153
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L +I +
Sbjct: 154 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLESIAE 213
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ + L + S+ +LR+AI +++
Sbjct: 214 AEGVALEDGAVDTLIKCSEGDLRKAITYLQSA 245
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 90/212 (42%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 36 WVEKYRPKTLSDVTAQDHTITVLERTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 95
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 96 LMKSRVLELNASDERGISIVREKVKDFARTQLTNPPAGYKTRYPCPPFKIIILDEADSMT 155
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L I +
Sbjct: 156 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEIAR 215
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ I L + SD +LR+AI +++
Sbjct: 216 LEGVPIEDAAVDALIKCSDGDLRKAITFLQSA 247
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 50/215 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KELY
Sbjct: 32 MQPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 61 GP--------------------------------------------------VIILNETD 70
GP +IIL+E D
Sbjct: 92 GPELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEAD 151
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME Y R L N ++++I + SRC R + V +
Sbjct: 152 SMTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVRE 211
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
I KEG+ + L + S+ +LR+AI +++
Sbjct: 212 IADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSA 246
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + ++ G PHLL YGP G GK + ++AL + LYGP
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T+ AQ ALRR +
Sbjct: 116 YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVI 175
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R + N ++++ PAI+SRC R +EI + + +KEG+ + +
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 236 DALLKLSRGDMRRALNVLQA 255
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 53/261 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L +L H + L ++ PHLLFYGP G GK T ++A +++Y P
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPT 90
Query: 63 ------------------------------------------------VIILNETDHLTR 74
++IL+E D +T+
Sbjct: 91 KMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTK 150
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
+AQ ALRR +EKY R + N ++ ++PAI+SRC R + IV L I +
Sbjct: 151 DAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVET 210
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ---IDQQIVEPDWKIYIRDTA 191
E L + P+ L S ++R I +++ + + Q I +P K +++
Sbjct: 211 EQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPK-EMKEVV 269
Query: 192 KLIISEQSPKKLLEVRTRLYE 212
K ++++ S K + ++T+L+E
Sbjct: 270 KTLLNDPSKKCMNTIQTKLFE 290
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ S+C R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 95/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L+++ L+ L+ + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 25 WVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 85 LAKTRVLELNASDERGISIVREKVKNFARLTVSKSSKEDLEKYPCPPYKIIILDEADSMT 144
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R + + L I +
Sbjct: 145 ADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKSLEATNALDRLKYISE 204
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
KE + ++ + S +LRRAI L+ ASK Y
Sbjct: 205 KESVQYEEGTLEKILEISQGDLRRAITLLQSASKRISY 242
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 96/226 (42%), Gaps = 54/226 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L +K G+ PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPN 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R +L N ++++I I SRC R +E L I +
Sbjct: 147 YDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQ 206
Query: 134 KEGLTIPPEFALRLAQQ----SDRNLRRAILMCEASKVQQYPFQID 175
+E L ++ Q+ S +LR+AI +++ F I+
Sbjct: 207 QENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKLSETFDIN 252
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 47/223 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPD 97
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAA 157
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + L ++ +KE
Sbjct: 158 QAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEH 217
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ I E L + S+ +LR+AI +++ +I ++I+
Sbjct: 218 VKISNEAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKII 260
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 48/221 (21%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
S WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ +++YG
Sbjct: 36 SPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIYG 95
Query: 62 P------------------------------------------VIILNETDHLTREAQQA 79
+++L+E D +T++AQ A
Sbjct: 96 SQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKDAQFA 155
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI 139
LRR +EKY + R L N ++++IPA++SRC R + L +I K EGL +
Sbjct: 156 LRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRHIIKSEGLDV 215
Query: 140 PPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L + S+ ++R+++ + +++ + QQI E
Sbjct: 216 DEGGLSALVRLSNGDMRKSLNILQSTHMAS------QQITE 250
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 34 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGPE 93
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 94 MMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEADSMT 153
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L +I +
Sbjct: 154 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEDIAQ 213
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ + L + S+ +LR+AI +++
Sbjct: 214 NEGVQLEDGAVDALIKCSEGDLRKAITFLQSA 245
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + E PHLLFYGP G GK + I+A ++LY
Sbjct: 13 WVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPGTGKTSTILACARKLYTAG 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 QFNSMVLEMNASDDRGIGIVRGQILNFASTGTLYKSGFKLIILDEADAMTNDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + ++I+ L I K+E L + +
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLNVSEDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L S ++R+ + + +++
Sbjct: 193 KEALIALSGGDMRKVLNVLQST 214
>gi|299117064|emb|CBN73835.1| EsV-1-187 [Ectocarpus siliculosus]
Length = 270
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 19/164 (11%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
I+L L+++AQ LRRTMEK+ +CRL+L + S+V +RSRC+ IR+P P+ E
Sbjct: 119 IVLRGAGDLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVAEPLRSRCVLIRVPLPSAEN 178
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDW 183
+ + + I K L++ + S R++ RA+ M +A D+ + W
Sbjct: 179 LAAAI-GIDDK-------ALVLQIVESSGRSISRAMFMAKAGSA-------DKML----W 219
Query: 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYL 227
YI + + EQSP+KL++VR L ELLV +P +++ K L
Sbjct: 220 VKYIESISTGVFLEQSPRKLIDVRDSLNELLVAGVPASLVLKTL 263
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
H + + L ++ + GD PHLL +G G+ K T + LL++LYGP +
Sbjct: 1 MHPEVEDRLTSMSRHGDIPHLLLHGLRGSDKMTLVRHLLEKLYGPGV 47
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 108/256 (42%), Gaps = 53/256 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 25 WVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELFGPE 84
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 85 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDEADSMT 144
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R + L +
Sbjct: 145 SDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRLRYVAT 204
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQYPF--QIDQQIVEPDWKIYIRDT 190
+E ++ + + S +LRRAI L+ A+K QY + Q V+ + D
Sbjct: 205 EESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAGVVPDDI 264
Query: 191 AKLIISEQSPKKLLEV 206
K+I+ + S K + ++
Sbjct: 265 LKMIVEKVSNKNVNDI 280
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 46/208 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + L+ L+ + PH+LFYGP G GK T +A+ ++LYGP
Sbjct: 9 WVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQLYGPD 68
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T +AQ
Sbjct: 69 LFKSRVLELNASDERGISVVRNKIKGFASTAVGQAVPGYPCPPYKILILDEADSMTTDAQ 128
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTME + R + N +S++I I SRC R E + L +I ++EGL
Sbjct: 129 SALRRTMETHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHIAEREGL 188
Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEAS 165
T+ A+ S ++R+AI + ++S
Sbjct: 189 TLGEGVYDAAAKHSGGDMRKAITLLQSS 216
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 38/201 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP + LR+ ++ D PHLLF GP+G GK T A+ + +YG
Sbjct: 16 IWIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD 75
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 76 DWRGNFLELNASDERGIDVVRDRIKNFARSSFGGHDYRVIFLDEADSLTNDAQSALRRTM 135
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + +I E + + +
Sbjct: 136 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDGL 195
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + ++RRAI +A+
Sbjct: 196 DALVYAAGGDMRRAINSLQAA 216
>gi|449672093|ref|XP_002154784.2| PREDICTED: replication factor C subunit 5-like [Hydra
magnipapillata]
Length = 186
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 40/172 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + ++ + EG PHLLFYGP G GK + I+A+ K+LY P
Sbjct: 14 WVEKYRPACLDDLISHKDIIDTIQKFISEGKLPHLLFYGPPGTGKTSTILAVAKQLYSPK 73
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T +AQ ALRR
Sbjct: 74 EFHSMVLELNASDDRGIGIVREQILGFASTRTVFKSKFKLVILDEADAMTNDAQNALRRI 133
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
MEKY R L N ++ +IPAI+SRC R +++ L ++ ++E
Sbjct: 134 MEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQVSLRLKHVIQEE 185
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN+L + H + + +++ PHLLFYGP G GK + I+A+ + +YG
Sbjct: 39 WVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAG 98
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 99 YKKQTLELNASDDRGIDVVREQIKQFAETRTLFSKGYKLIILDEADMMTTAAQAALRRVI 158
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + N +++++PAI+SRC R +E+ + ++ EG+ + +
Sbjct: 159 EQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAAEGVKLTEDGK 218
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 219 KALLKLSKGDMRRALNILQA 238
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 134/309 (43%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L ++ + + L ++ D P+LLF G +G GK T A+ +E+YG
Sbjct: 17 IWVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 77 DWRDNFLELNASDDRGIDVVRGRIKEFARASFGGYSYRIIFLDEADSLTSDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ + R IL N S++I I+SRC R + + + I EG+ I
Sbjct: 137 EQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGIEITDGGV 196
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++RRA+ +A+ V +D+++V + + +++
Sbjct: 197 EALVYAADGDMRRAVNSLQAAAVMGET--VDEEVVYTITATARPEEIEAMVTSALEGDFT 254
Query: 205 EVRTRLYELLVH-SIPVNVLFKYLLEGLLANCDSDLKS-KSIEMAAMFEHRIHKGSKPIF 262
R L +LL + + + L + SD ++ ++++ ++RI +G+
Sbjct: 255 TARATLDDLLSNKGLSGGDIIDQLHRSVWDLGLSDREAVRTLDRIGETDYRITEGANERI 314
Query: 263 HIEAYVASF 271
+EA++AS
Sbjct: 315 QLEAFLASL 323
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + LR L D P+LL YGP G GK + I+A ++L+G
Sbjct: 38 WVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQLFGDM 97
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
++IL+E D +T AQ
Sbjct: 98 FKERILELNASDDRGIAVIRNKVKTFAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQ 157
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK T R L N +S++I I SRC R E+I+ L IC +EG+
Sbjct: 158 AALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQEGV 217
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
T+ + S +LRRAI
Sbjct: 218 TVDDGVYKDIVDISGGDLRRAI 239
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + + +++ PHLLFYGP G GK + I+A+ + +YG
Sbjct: 37 WVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGTE 96
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 97 YRKQILELNASDDRGIEVVREQIKNFAETRTLFSKGYKLIILDEADMMTTAAQSALRRVI 156
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + N ++++IPAI+SRC R E+ + N+ EG+ I E
Sbjct: 157 EQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAEGVKITAEGK 216
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 217 QALLKLSKGDMRRALNVLQA 236
>gi|387593541|gb|EIJ88565.1| hypothetical protein NEQG_01255 [Nematocida parisii ERTm3]
gi|387597195|gb|EIJ94815.1| hypothetical protein NEPG_00339 [Nematocida parisii ERTm1]
Length = 317
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 135/314 (42%), Gaps = 56/314 (17%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL----- 59
+KYRP +L+ L + L+ L+K GD PH LF+GP G GK T A+ +E+
Sbjct: 10 TEKYRPTHLENLVGNVHITAGLQALVKSGDIPHFLFFGPPGTGKTTAAKAICREVLKTSD 69
Query: 60 ---------------------------YG-----PVIILNETDHLTREAQQALRRTMEKY 87
+G ++IL+E D +T++AQ ALRR +E Y
Sbjct: 70 RNVMELNASDERGISVIRDKVKVFASTFGISNKMKMVILDEADSMTKDAQNALRRIIEIY 129
Query: 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
R I+ N +++IPAI+SRC R E+ + I KEG T R+
Sbjct: 130 SKNVRFIIICNYFTKIIPAIKSRCAPFRFGPVKPSEMFGFIKEIISKEGGTGDTSGIERV 189
Query: 148 AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE---------- 197
+ S ++R+AI + + +++I + +D K I+E
Sbjct: 190 CEISQGDIRKAINLTNGLLITA-----NREITSEKVNEHYKDIKKEEIAETLHIMRTENF 244
Query: 198 QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKG 257
Q KK E Y L + I VN + + L + N ++ + K ++ + EHR+ +G
Sbjct: 245 QRVKKEFEKHRVEYGLGLKEI-VNEIAELLKK---ENNNNQSRCKEMQYLSEIEHRLARG 300
Query: 258 SKPIFHIEAYVASF 271
+ A ++ F
Sbjct: 301 ASETVQENALISYF 314
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 139/322 (43%), Gaps = 50/322 (15%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWV+KYRP L + L+ +++ PHLLF GP+G GK T +AL +LY
Sbjct: 5 LWVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKS 64
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+I L+E D+LT +AQQALR
Sbjct: 65 EELVAANYLELNASDERGIDTIRTKIKDFAKTAPFGEVPFKIIHLDEADNLTADAQQALR 124
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R ME Y T R I N S++I I+SRC R E I + L I ++EGL
Sbjct: 125 RIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAEREGLKYTE 184
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
+ + ++ +LR+AI + + + +D ++V + + + +I+
Sbjct: 185 DGISAIIYVAEGDLRKAINLLQTASAMAST--VDSKVVYRVAGLAHPEEVRAMINSALKG 242
Query: 202 KLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFE--HRIHKGS 258
K L R L L++ + + + + L ++A+ K K++ M + E R+ +G+
Sbjct: 243 KFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVDFRVTEGA 302
Query: 259 KPIFHIEAYVASFMAMYLQFME 280
H + +A+ +A ++ E
Sbjct: 303 ----HGDVQLAAMLAKLVEVGE 320
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + + + L+ + KEG+ PHL+ G G GK T I+ L L GP
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T AQQALRRT
Sbjct: 83 YKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRT 142
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N +++I I+SRC +R T ++++ L NICK E + +
Sbjct: 143 MEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDG 202
Query: 144 ALRLAQQSDRNLRRAI 159
L ++ ++R+A+
Sbjct: 203 LAALIMTAEGDMRQAV 218
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 75/326 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L L H + + + + + PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSPA 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 HFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + E+++ L + ++E + + +
Sbjct: 133 IEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQEENVNVTDDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQ-------------QYPFQID-QQIVEPDWKIYIRD 189
L + ++R+ + + +++ + YP + + + +++ D
Sbjct: 193 KNALLTLAKGDMRKVLNVLQSTSMAFDIVNEDNVYMCVGYPLRSEIEHMLQTLLSAATFD 252
Query: 190 TAKLIISEQSPKKLL---EVRTRLYELLVH-SIPVNVLFKYLLEGLLANCDSDLKSKSIE 245
+A I E K+ L ++ T L+ ++ +P++V+ K +++
Sbjct: 253 SAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIVK---------------- 296
Query: 246 MAAMFEHRIHKGSKPIFHIEAYVASF 271
A E R+ KG A V++F
Sbjct: 297 -MAQVEERLTKGCTETAQTAALVSAF 321
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + L+ + ++G+ P+L+ GP G GK T I++L EL GP
Sbjct: 19 WVEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHELLGPS 78
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 79 YREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRT 138
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ S++I I+SRC +R + +EI+ L + E + PE
Sbjct: 139 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPYVPEG 198
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 199 LEAIIFTADGDMRQALNNLQAT 220
>gi|363751222|ref|XP_003645828.1| hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889462|gb|AET39011.1| Hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
Length = 332
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
W++KYRP L ++ + +R +EG PHLLFYGP G GK + I AL +E+YG
Sbjct: 13 WIEKYRPERLDEVYGQTRVVETVRKFAQEGRLPHLLFYGPPGTGKTSTISALAREIYGKN 72
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 73 YRKMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTSAAQNALRRII 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R + AN ++ PA+ SRC R + I + N+ E LT+ +
Sbjct: 133 ERFTKNTRFCILANYAHKLTPALLSRCTRFRFQPVPAQSIERCVLNVMAHEHLTLAEDAR 192
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + ++ ++R+A+ + +ASK
Sbjct: 193 RALLRLANGDMRKALNVLQASKA 215
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + + + PHLL YGP G GK + I+AL + +YGP
Sbjct: 44 WVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGPE 103
Query: 63 ---------------------------------------------------VIILNETDH 71
+I+L+E D
Sbjct: 104 NVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSARSGSGSSSGAAGYKLIVLDEADA 163
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN- 130
+T AQ ALRR MEKY R + AN ++ PA+ SRC R +P E + VL +
Sbjct: 164 MTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRF-SPLKEGDIRVLVDR 222
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDT 190
+ +EG+ I P+ L + + ++RRA+ + +A P + + PD +I +RD
Sbjct: 223 VVDEEGVRIRPDATDALVRLAKGDMRRALNVLQACHASSTPLRGPGEPKVPDAQI-VRD- 280
Query: 191 AKLIISE 197
LI +E
Sbjct: 281 --LITTE 285
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 53/215 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L+ L+ + PH+LFYGP G GK + I+AL K L+GP
Sbjct: 41 WVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPA 100
Query: 63 ----------------------------------------------------VIILNETD 70
+IIL+E D
Sbjct: 101 LYRTRILELNASDERGINIVREKIKDFARTQLSHPSGLDAAYKAKYPCPPFKIIILDEAD 160
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME+Y R L N ++++I + SRC R A +
Sbjct: 161 SMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRINE 220
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
I + EGLT+ L + S+ +LRRAI +++
Sbjct: 221 IAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQSA 255
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 44/207 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ ++ L+ + G PHLLFYGP G GK + I+A+ ++L+GP
Sbjct: 19 WVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGPD 78
Query: 63 -------------------------------------------VIILNETDHLTREAQQA 79
+I+L+E D +T +AQ A
Sbjct: 79 FRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPPFKIIVLDEADSMTGDAQSA 138
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI 139
LRR ME Y R L N +S++I + SRC R + S + I +E + +
Sbjct: 139 LRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSMASRVRFIASEEHVNV 198
Query: 140 PPEFALRLAQQSDRNLRRAILMCEASK 166
P L + S+ +LR+AI +++K
Sbjct: 199 PDPVLESLLECSNGDLRKAINYLQSAK 225
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPE 94
Query: 63 -------------------------------------------------VIILNETDHLT 73
+I+L+E D +T
Sbjct: 95 FVKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYRDRYPCPPFKLIVLDEADSMT 154
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + + + +I
Sbjct: 155 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARARVEDIAT 214
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+E +++ P L + S+ +LR+AI +++
Sbjct: 215 REHVSLAPGAVDALIRCSEGDLRKAITFLQSA 246
>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
Length = 329
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 46/260 (17%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--- 61
V+KYRP+ L + H + + +R +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 1 VEKYRPSVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 60
Query: 62 ----------------------------------------PVIILNETDHLTREAQQALR 81
+IIL+E DH+T AQ A+R
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMR 120
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R ME Y R L N ++++ PAI+SRC R E +++ +I K E + +
Sbjct: 121 RIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTK 180
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI---ISEQ 198
L + ++RR + + + ID+ ++ I + K I +++
Sbjct: 181 NGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPTEIKFILEHLTKS 240
Query: 199 SPKKLLEVRTRLYELLVHSI 218
+ K+ E+ T+L E +SI
Sbjct: 241 TIKESYEIITKLQEDKGYSI 260
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + ++ G PHLLFYGP G GK + ++AL + LYG
Sbjct: 56 WVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYGSA 115
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T+ AQ ALRR +
Sbjct: 116 YKKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVI 175
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R + N ++++ PAI+SRC R +EI + + +KEG+ + +
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTEDGR 235
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 236 DALLKLSRGDMRRALNVLQA 255
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + +KE PHLLFYGP G GK + I+A +++Y P
Sbjct: 12 WVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQIYSPK 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I+L+E D +T +AQ ALRR
Sbjct: 72 EFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTGFKLIVLDEADAMTNDAQNALRRV 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + ++ + ++ +E LT+ +
Sbjct: 132 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRIDHVITQERLTVTADG 191
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L + ++R+A+ + +++ +
Sbjct: 192 KKALMDLAQGDMRKALNILQSTSM 215
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 45/201 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W +KYRP L + + + L+ L+ D PHLLFYGP G GK + +A ++L+
Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKN 76
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+IIL+E D +TREAQ
Sbjct: 77 IFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQA 136
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
A+RR +E + T R IL N +S++IP + SRC R + E V L IC EG
Sbjct: 137 AMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTP 196
Query: 139 IPPEFALRLAQQSDRNLRRAI 159
+ + ++ + S+ +LRRA+
Sbjct: 197 MSDDELKQVMEYSEGDLRRAV 217
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 39/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + + +R ++EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 12 WVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALAREIYGKN 71
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 72 YSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 131
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + I + + N+ E L +
Sbjct: 132 EKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIANVLVHENLKLNDTAK 191
Query: 145 LRLAQQSDRNLRRAILMCEASK 166
L S ++RR + + +AS+
Sbjct: 192 RALLDLSKGDMRRVLNVLQASR 213
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 43/198 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP ++ + + L N L+ G PH+LFYGP G GK T +A+ +L+G
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGVL 70
Query: 62 ---------------------------------------PVIILNETDHLTREAQQALRR 82
+I+L+E D +T +AQ ALRR
Sbjct: 71 ELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRR 130
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKEGLTIPP 141
TME Y R N +S++I + SRC R P EEI+S + I ++EGL +
Sbjct: 131 TMETYSKVTRFFFICNYVSRIIEPLASRCAKFRF-KPLSEEIMSSRILYISQEEGLCLDA 189
Query: 142 EFALRLAQQSDRNLRRAI 159
E L+ S +LRRAI
Sbjct: 190 EALSTLSFISHGDLRRAI 207
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 39/204 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L + ++ G+ PHLLF G +G GK T +AL +E +
Sbjct: 7 IWIEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFFKD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++ L+E D LT +AQ ALRRT
Sbjct: 67 SWHMNFRELNASDERGIDVVRNQIKQFARTSPLGGAGFKILFLDEADALTPDAQAALRRT 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y +TCR IL N S++I I+SRC R + + E I + I + E LTI E
Sbjct: 127 MESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENEKLTITGEA 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ + + ++R+AI + + +
Sbjct: 187 IDAIIEIAQGDMRKAINALQGAAI 210
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L + + + L ++E PHLLFYGP G GK + I+AL +E+YG
Sbjct: 8 WVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYGKN 67
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T AQ ALRR +
Sbjct: 68 YSHMVLELNASDDRGIDVVRNQIKEFASTRQIFSRGFKLVILDEADAMTNAAQNALRRII 127
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA++SRC R + I + N+ E L + +
Sbjct: 128 EKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHEHLRVSEDAV 187
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S ++RR + + +ASK
Sbjct: 188 QALIKLSKGDMRRVLNVLQASKA 210
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + N L+ L + PH+LFYGP G GK + ++AL +ELYGP
Sbjct: 22 WVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGPD 81
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 82 LIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSMT 141
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + RC R ++ V L I +
Sbjct: 142 YDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQRLRYIVQ 201
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+E L + + L S+ +LRRAI +++
Sbjct: 202 QEELNVDEDVFSYLLTISNGDLRRAITYLQSA 233
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 116/282 (41%), Gaps = 67/282 (23%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--- 61
V+KYRPN+L ++ H + + PHLL YGP G GK + ++AL + +YG
Sbjct: 62 VEKYRPNSLDDVEGHQDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKN 121
Query: 62 -----------------------------------------------PVIILNETDHLTR 74
+IIL+E D +T
Sbjct: 122 MRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTA 181
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
AQ ALRR MEKY R + AN ++ PA+ SRC R ++I +++ + ++
Sbjct: 182 TAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEE 241
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI 194
E + I + L S ++RRA+ + +A P Q + PD I +RD
Sbjct: 242 ENVNITQDATDSLVSLSKGDMRRALNVLQACHASSTPLQAPGKPA-PDPSIIVRDQI--- 297
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+T +Y+ + P ++ KY++E LL+ D
Sbjct: 298 -----------TQTTIYDCIAAPHPSDI--KYIIETLLSKND 326
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 35 WVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGPE 94
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 95 MIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCPPFKIIILDEADSMT 154
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
++AQ ALRRTME Y R L N ++++I + SRC R + L +I +
Sbjct: 155 QDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLGDIAE 214
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EG+ + L + S+ +LR+AI +++
Sbjct: 215 NEGVQLEDGAVDALIKCSEGDLRKAITYLQSA 246
>gi|294866376|ref|XP_002764685.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239864375|gb|EEQ97402.1| replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 287
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++N+ +L+R AQ LRRTMEKY+ ++ A+S++ +IP +RSRC+ IR+P PT E
Sbjct: 131 VVVVNDAHNLSRSAQAGLRRTMEKYVGVLKIFFHADSLASLIPPLRSRCMSIRVPRPTTE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP- 181
+ L + K G+ + P A +A +S +LR ++ +A Q + P
Sbjct: 191 VVKIELERVKAKMGVEMNPHLATIIATESRGDLRYGLMQLDAISAQNGGSHALRNANTPL 250
Query: 182 ---DWKIYIRDTAKLIISEQSPKKL 203
WK+ + D K I++EQ+PK+L
Sbjct: 251 ARLPWKVVLEDIVKDILTEQTPKQL 275
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+ +D RP L +L +H LR L + D PHLLFYGP+G GK TRI LL+E++
Sbjct: 1 MAFLIDSERPTTLDELTYHDSITQQLRGLARRPDLPHLLFYGPTGGGKMTRIQCLLREIF 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPAV 64
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 54/228 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRPN L + H + +++ PHLL YGP G GK + I+AL +++Y
Sbjct: 48 WVEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIYGPK 107
Query: 61 ----------------------------------------GP-----------VIILNET 69
GP +IIL+E
Sbjct: 108 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKFGLGAFKLIILDEA 167
Query: 70 DHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLT 129
D +T AQ ALRR MEKY R + AN ++ PA+ SRC R E+I ++
Sbjct: 168 DAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRRLVD 227
Query: 130 NICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177
++ +E + I P+ L + S ++RRA+ + +A P I Q
Sbjct: 228 HVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQACHAGSRPLPIRGQ 275
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 90/209 (43%), Gaps = 50/209 (23%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M WV+KYRP L + L+ L+ + PH+LFYGP G GK + ++AL KELY
Sbjct: 32 MQPWVEKYRPKGLGDVTAQDHTITVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELY 91
Query: 61 GP--------------------------------------------------VIILNETD 70
GP +IIL+E D
Sbjct: 92 GPELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEAD 151
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME Y R L N ++++I + SRC R + V +
Sbjct: 152 SMTQDAQSALRRTMETYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVRE 211
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
I KEG+ + L + S+ +LR+AI
Sbjct: 212 IADKEGVRLEEGAVEALIKCSEGDLRKAI 240
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 44/225 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGD-FPHLLFYGPSGAGKKTRIMALLKELYGP 62
WV+KYRP NL + H ++ ++E P+LLFYGP G GK + I+AL K+LYG
Sbjct: 20 WVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGPPGTGKTSLIVALAKQLYGK 79
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
+IIL+E D +T +AQ ALR
Sbjct: 80 NYKQLVLELNASDDRGIDVVREQIKTFASTANFGMVGKGTKLIILDEADSMTNQAQFALR 139
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R + N +S++IPA++SRC + +++ + IC E L
Sbjct: 140 RIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQDAKLRIAQICNAENLKYKN 199
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY 186
+ + D ++RR + M ++ +Q Y D+Q+ D +Y
Sbjct: 200 SGIEAVFKLCDGDMRRVVNMLQSLSLQGYGS--DEQVEITDELVY 242
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 117/284 (41%), Gaps = 69/284 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN+L ++ H + + PHLL YGP G GK + ++AL + +YG
Sbjct: 45 WVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNK 104
Query: 62 ------------------------------------------------PVIILNETDHLT 73
+IIL+E D +T
Sbjct: 105 NMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADAMT 164
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
AQ ALRR MEKY R + AN ++ PA+ SRC R ++I +++ + +
Sbjct: 165 ATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIE 224
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQQIVEPDWKIYIRDTAK 192
E + I + L S ++RRA+ + +A P Q + V+P+ +RD
Sbjct: 225 DEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPN--TIVRDQI- 281
Query: 193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+T +Y+ + P ++ KY+LE LL+ D
Sbjct: 282 -------------TQTTIYDCIAAPHPSDI--KYILETLLSKND 310
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ ++E PHLL YGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLYKDK 75
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 135
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R + ++++ L ++ ++E + I +
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDG 195
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ S ++RR++ + +++ +
Sbjct: 196 MKAIVTLSSGDMRRSLNVLQSTSM 219
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 51/207 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + LR L + PH+LFYGP G GK + I+AL ++L+GP
Sbjct: 27 WVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 86
Query: 63 --------------------------------------------------VIILNETDHL 72
+IIL+E D +
Sbjct: 87 NFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADSM 146
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T++AQ ALRR ME Y R L N ++++I + SRC R E S LT I
Sbjct: 147 TQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYIA 206
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAI 159
K+E + + L S+ +LRRAI
Sbjct: 207 KEEQIDVDTSVIDALITVSNGDLRRAI 233
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + + +++ PHLLFYGP G GK + I+A+ + +YGP
Sbjct: 31 WVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGPD 90
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T+ AQ ALRR +
Sbjct: 91 YRKQILELNASDDRGIDVVREQVKQFAETRTLFSKGFKLIILDEADMMTQAAQAALRRVI 150
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + N ++++ PA++SRC R +E+ L + + E + + P+
Sbjct: 151 EQYTKNVRFCIICNYVNKITPAVQSRCTRFRFSPLPIKEVERRLEGVIEAESVKLTPDGK 210
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 211 DALLKLSKGDMRRALNVLQA 230
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 42/206 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYG
Sbjct: 33 WVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 92
Query: 63 -----------------------------------------VIILNETDHLTREAQQALR 81
++IL+E D +T++AQ ALR
Sbjct: 93 YQNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNVKLVILDEADAMTKDAQFALR 152
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +EKY + R L N S++IPA++SRC R + L + ++EGL +
Sbjct: 153 RVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQQEGLDVTD 212
Query: 142 EFALRLAQQSDRNLRRAILMCEASKV 167
+ + ++ +LR+A+ + +++++
Sbjct: 213 GGLAAIVRLANGDLRKALNILQSAQM 238
>gi|448509973|ref|ZP_21615854.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
gi|445696314|gb|ELZ48405.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
Length = 208
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ + + D PHLLF GP+G GK T A+ +E+YG
Sbjct: 17 IWIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGE 76
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++ L+E+D LT +AQ ALRRTM
Sbjct: 77 DNWRGNFLELNASDQRGIDVVRDRIKGFARSSFGGDFRIVFLDESDSLTDDAQSALRRTM 136
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + E + ++ I E + +
Sbjct: 137 EQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAGV 196
Query: 145 LRLAQQSDRNLR 156
L +D ++R
Sbjct: 197 DALVYAADGDMR 208
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + ++ G PHLL YGP G GK + ++AL + LYGP
Sbjct: 56 WVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA 115
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T+ AQ ALRR +
Sbjct: 116 YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVI 175
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R + N ++++ PAI+SRC R +EI + + +KEG+ + +
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 145 LRLAQQSDRNLRRAILMCEA 164
+ + S ++RRA+ + +A
Sbjct: 236 DAILKLSRGDMRRALNVLQA 255
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ +K + PHLLF GP G GK ++++KE++G
Sbjct: 7 IWIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFGE 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
VI L+E D LT +AQ ALRRT
Sbjct: 67 TWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEADFKVIFLDEADALTNDAQSALRRT 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y T R IL N S++I I+SRC R + E + + I +EGL +
Sbjct: 127 MERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGLRVSDGG 186
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + ++R+AI +A+
Sbjct: 187 LSAIEYVAGGDMRKAINALQAA 208
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 90/202 (44%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + LR L DFP+LLFYGP G GK + I+A ++L+G
Sbjct: 34 WVEKYRPKTVEDVVEQAEVVEVLRQCLSGSDFPNLLFYGPPGTGKTSTILAAARQLFGSL 93
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 94 YKDRILELNASDERGIQVVRDKIKTFAQLTAGGMRDDGKRCPPFKIIILDEADSMTAAAQ 153
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I + SRC R E+I+ L I +EGL
Sbjct: 154 AALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYISNEEGL 213
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
L++ + S ++RRAI
Sbjct: 214 KAGKPVLLKIVEASGGDMRRAI 235
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 53/215 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + LR L+ + PH+LFYGP G GK + I+AL K L+GP
Sbjct: 425 WVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 484
Query: 63 ----------------------------------------------------VIILNETD 70
+IIL+E D
Sbjct: 485 LYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEAD 544
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME Y R L N ++++I + SRC R + ++N
Sbjct: 545 SMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRISN 604
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
I +EGL + L + + +LRRAI +++
Sbjct: 605 IAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSA 639
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ + + LR ++ GD P++L YGP G GK + I+A ++++G
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDM 91
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 92 FKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQ 151
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I I SRC R A ++++ L IC+ EG+
Sbjct: 152 SALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGV 211
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
I + + + S +LRRAI
Sbjct: 212 KIEDDAYKSIVKISGGDLRRAI 233
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + + L+ + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 17 WVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 76
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V+IL+E D +T AQQALRRT
Sbjct: 77 YKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRT 136
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R L N+ S++I I+SRC +R + +EI+ L + + E + PE
Sbjct: 137 MEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPYVPEG 196
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 197 LEAIIFTADGDMRQALNNLQAT 218
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 53/215 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + LR L+ + PH+LFYGP G GK + I+AL K L+GP
Sbjct: 425 WVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 484
Query: 63 ----------------------------------------------------VIILNETD 70
+IIL+E D
Sbjct: 485 LYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEAD 544
Query: 71 HLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130
+T++AQ ALRRTME Y R L N ++++I + SRC R + ++N
Sbjct: 545 SMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRISN 604
Query: 131 ICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
I +EGL + L + + +LRRAI +++
Sbjct: 605 IAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSA 639
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 51/214 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+ L+ + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 29 WVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELYGPE 88
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 89 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDEADSMT 148
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R + L + +
Sbjct: 149 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNSIGRLEYVAR 208
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASK 166
+E + + + S+ +LRRAI L+ ASK
Sbjct: 209 EESVQYDDDVMKCILDISEGDLRRAITLLQSASK 242
>gi|333987924|ref|YP_004520531.1| replication factor C small subunit [Methanobacterium sp. SWAN-1]
gi|333826068|gb|AEG18730.1| Replication factor C small subunit [Methanobacterium sp. SWAN-1]
Length = 322
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 77/329 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
WV+KYRP L + N L+ +KE P+L+F GP+G GK T +AL K + G
Sbjct: 5 WVEKYRPQTLDDVVGQDHIINRLKKYIKEETSMPNLMFTGPAGVGKTTTAIALAKAVLGE 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D++T++AQ ALRR M
Sbjct: 65 YWRQNFLELNASDARGIDTVRHNIKNFCRLKAVGAPFRIIFLDEVDNMTKDAQHALRREM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E Y T IL N S++I I+SRC R ++ L I E L I P
Sbjct: 125 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPVKGRHVMGRLEAIAAAENLKISPGAI 184
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
+ ++ ++R+A+ + +AS +D+++ E D+ ++S+ PK +
Sbjct: 185 ESIVYFAEGDMRKAVNILQASS------SMDEEVTE--------DSVHEVVSKAKPKDVR 230
Query: 205 EVRTRLYE--------LLVHSIPVNV-------------LFKYLLEGLLANCDSDLKSKS 243
++ + + LL S+ V + + +E L+ D+
Sbjct: 231 KIVNKALDGDFLGARDLLRESMVVQGTSGEDMVTQIYQEVSRMAMEELIP---EDVYIDL 287
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
IE +++RI +G+ P +EA + F+
Sbjct: 288 IESIGEYDYRIREGANPRIQLEALLTKFL 316
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP++L +L H + + ++ + E PHLLFYGP G GK + I A K+LYG
Sbjct: 12 WVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYGKA 71
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T +AQ ALRR +
Sbjct: 72 YKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAGFKLIILDEADAMTNDAQAALRRVI 131
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R L N +S++ PA++SRC R E ++ + + E + P
Sbjct: 132 EKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVIDAEHIETTPAGI 191
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L + + ++R+A+ + +++
Sbjct: 192 EALVKLASGDMRKALNILQST 212
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 95/216 (43%), Gaps = 44/216 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP +L + + +R L+ G PHLLFYGP G GK + I+AL +E+YG
Sbjct: 14 WVEKYRPESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSSIIALAREIYGKN 73
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 74 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRII 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I ++N+ +E L +
Sbjct: 134 ERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQRRISNVLVREQLQMTESAE 193
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
L S ++RR + + +A K IDQ VE
Sbjct: 194 NALLDLSRGDMRRVLNVLQACKA-----VIDQPNVE 224
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 48/204 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ +L H + L ++ PHLLFYGP G GK T ++A +++Y P
Sbjct: 13 WVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSPA 72
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
++IL+E D +TR+
Sbjct: 73 KMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVILDEADAMTRD 132
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRR +EKY R + N ++ +IPAI+SRC R + IV L +I E
Sbjct: 133 AQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQHIVDSE 192
Query: 136 GLTIPPEFALRLAQQSDRNLRRAI 159
+ + P+ L S ++R I
Sbjct: 193 SVKMTPDGQKALLTVSKGDMRTVI 216
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 24 WVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPS 83
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 84 LMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSMT 143
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y + R L N ++++I + SRC R + + L I +
Sbjct: 144 ADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIAQ 203
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E L+ ++ ++ +LR+AI L+ A+K+ Y
Sbjct: 204 QEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSY 241
>gi|386876489|ref|ZP_10118600.1| putative replication factor C small subunit [Candidatus
Nitrosopumilus salaria BD31]
gi|386805696|gb|EIJ65204.1| putative replication factor C small subunit [Candidatus
Nitrosopumilus salaria BD31]
Length = 324
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 141/311 (45%), Gaps = 45/311 (14%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELY 60
+WV+KYRP L ++ + N L L+K+ D PHL+F G +G GK T + + +++
Sbjct: 13 GMWVEKYRPTKLSEIVNQTEIINSLEALIKDPTDMPHLMFSGSAGVGKTTAALCIARQIL 72
Query: 61 G---------------------------------------PVIILNETDHLTREAQQALR 81
G +IIL+E D +T +AQ ALR
Sbjct: 73 GENAKDYTLELNASDERGIGMVREKVKKFSRFAGMVDVPFKIIILDEADEMTADAQTALR 132
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R +E CR I AN++S++I I+SRC + + E+I++ L I KKE +
Sbjct: 133 RIIEDTAKICRFIFIANNISKIIDPIQSRCATFKFTSIPEEDIINRLEEIAKKEKVKTDK 192
Query: 142 EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
+ + S+ ++R AI + +A+ I ++ V+ + +++
Sbjct: 193 KGLKVIYDYSEGDMRHAINLMQATASLG---GITEEHVKASAGLTKTSDVDMVLKIALSG 249
Query: 202 KLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP 260
K+LE R ++ EL+ V+ + + KYL + + L + +E+ A +++R+ G+
Sbjct: 250 KVLEAREKMIELIKVYGMSESDFLKYLNSAVFKSKHEKL-ADILEVIAKYDYRVLVGANS 308
Query: 261 IFHIEAYVASF 271
+ A +A
Sbjct: 309 EIQLSAMLAEL 319
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + + L+ + ++G+ P+L+ GP G GK T I+AL EL GP
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 76
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V+IL+E D +T AQQALRRT
Sbjct: 77 YREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRT 136
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R L N+ S++I I+SRC +R + +EI+ L + + E + PE
Sbjct: 137 MEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEG 196
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+ + +A+
Sbjct: 197 LEAIIFTADGDMRQGLNNLQAT 218
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 92/214 (42%), Gaps = 52/214 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + LR ++ + PHLL +GP G GK + I+AL +EL+GP
Sbjct: 35 WVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTILALCRELFGPE 94
Query: 63 ---------------------------------------------------VIILNETDH 71
V+IL+E D
Sbjct: 95 LMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREKYPCPPFKVVILDEADA 154
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131
LT +AQ ALRR +E Y T R L AN +S++I I SRC R + + + + +I
Sbjct: 155 LTTDAQSALRRIIENYSKTTRFCLIANFVSRIIAPIASRCSKFRFKSLEGPQASARIQDI 214
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
E + R Q SD +LRRAI + +++
Sbjct: 215 LNAEHVEYEDGVVERSLQVSDGDLRRAITLLQSA 248
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 117/284 (41%), Gaps = 69/284 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN+L ++ H + + PHLL YGP G GK + ++AL + +YG
Sbjct: 45 WVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNK 104
Query: 62 ------------------------------------------------PVIILNETDHLT 73
+IIL+E D +T
Sbjct: 105 NMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADAMT 164
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
AQ ALRR MEKY R + AN ++ PA+ SRC R ++I +++ + +
Sbjct: 165 ATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIE 224
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQQIVEPDWKIYIRDTAK 192
E + I + L S ++RRA+ + +A P Q + V+P+ +RD
Sbjct: 225 DEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGRPAVDPN--TIVRDQI- 281
Query: 193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
+T +Y+ + P ++ KY+LE LL+ D
Sbjct: 282 -------------TQTTIYDCIAAPHPSDI--KYILETLLSKND 310
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 39/196 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP +L+++ + L + E + PHLLF GP G GK T AL +LYG
Sbjct: 9 LWTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGD 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 69 NYTQYMLELNASDERGIDTIREKVKEFARSKTPPDIPFKIVLLDEADNMTADAQQALRRL 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y R IL AN S++I I+SRC R +++V L I +KE + +
Sbjct: 129 MELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENVKYDEDA 188
Query: 144 ALRLAQQSDRNLRRAI 159
+ S+ ++R+AI
Sbjct: 189 LEAIYDISEGDMRKAI 204
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP +L ++ + L+ +KE + PH+LF GP G GK T +A +LYG
Sbjct: 11 LWAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGK 70
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E+D+LT +AQQALRR
Sbjct: 71 NYQQFVLELNASDERGIDVIRGKIKEFARTSVVGGVPFKLIILDESDNLTSDAQQALRRM 130
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME + T R IL AN S++I I+SR R E+++ L I + E ++
Sbjct: 131 MENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESVSYEESA 190
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + +++
Sbjct: 191 LEAVFEISEGDMRKAINVLQSA 212
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 50/211 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + L+ L + PH+LFYGP G GK + ++AL KELYGP
Sbjct: 28 WVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTVLALAKELYGPE 87
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 88 LMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIAEKYPCPPFKIIILDEADSMT 147
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R + ++ L ++
Sbjct: 148 TDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLDGNDALARLRHVSD 207
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164
E L++ ++ + ++ +LRRAI + ++
Sbjct: 208 AEQLSVEDGVLEKILEVANGDLRRAITILQS 238
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 24 WVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPS 83
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 84 LMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSMT 143
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y + R L N ++++I + SRC R + + L I +
Sbjct: 144 ADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIAQ 203
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E L+ ++ ++ +LR+AI L+ A+K+ Y
Sbjct: 204 QEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSY 241
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 51/315 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + L+ + +G P+L+F GP+G GK T +AL+K + G
Sbjct: 5 WVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILGDY 64
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
+I L+E D++T++AQ ALRR ME
Sbjct: 65 WRQNFLELNASDARGIETVRTNIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRREME 124
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
Y TC IL N S++I I+SRC R EEI L I + EG +
Sbjct: 125 MYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIADRLKYIAEAEGCEYEEKAIE 184
Query: 146 RLAQQSDRNLRRAILMCEASK-----VQQYPFQIDQQIVEPDWKIYIRDTA---KLIISE 197
+ + ++R+++ M +++ + + +++ + + K + D A K + S
Sbjct: 185 TIVLFGEGDMRKSVNMLQSAASTGNITEDHVYEVVTKARPQEIKEMV-DAALRGKFMESR 243
Query: 198 QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKG 257
+ ++ ++ E +V+ I +V + +++G ++ ++ + I A + RI +G
Sbjct: 244 NILRDVMILQGTSGEDMVNQIYQDVAGR-VMDGKMS---GEVYMELIGAIADTDFRIREG 299
Query: 258 SKPIFHIEAYVASFM 272
+ P +EA +A F+
Sbjct: 300 ANPRIQLEALLAKFL 314
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L +L H + + E PHLL YGP G GK + I+A ++LY P
Sbjct: 12 WVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARKLYTPA 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 72 QFNSMVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADAMTIDAQNALRRI 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R E+I+ L ++ + E L + +
Sbjct: 132 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLKVTEDG 191
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L S ++R+ I + +++
Sbjct: 192 KQALITLSGGDMRKVISVLQST 213
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L ++ + L+ + + + PH+LF GP G GK T L +LYG
Sbjct: 7 LWTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I+L+E D++T +AQQALRR
Sbjct: 67 NYRQYILELNASDERGIEVIRSKVKEFARTRVVGNVPFKIILLDEADNMTADAQQALRRL 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL AN S++I I+SR R E++V L IC E + +
Sbjct: 127 MELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKVKCHEDA 186
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++RRAI + +AS
Sbjct: 187 LNTIFELSEGDMRRAINILQAS 208
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ N L+ L + PH+LFYGP G GK + I+AL KEL+GP
Sbjct: 25 WVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPPGTGKTSTILALTKELFGPE 84
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 85 LTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPCPPYKIIILDEADSMT 144
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y + R L N ++++I + SRC R + + L I K
Sbjct: 145 ADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKSLDAANALDRLKYIAK 204
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+E + + + S ++RRAI + +++
Sbjct: 205 EESVDYEEGVLDDILKISSGDMRRAITLLQSA 236
>gi|402863245|ref|XP_003895941.1| PREDICTED: replication factor C subunit 2 isoform 2 [Papio anubis]
gi|384948614|gb|AFI37912.1| replication factor C subunit 2 isoform 2 [Macaca mulatta]
gi|387542034|gb|AFJ71644.1| replication factor C subunit 2 isoform 2 [Macaca mulatta]
Length = 318
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 95
Query: 63 ----VIILNET-DHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
V+ LN + D +T AQQALRRTME Y T R L N+ ++I I+SRC +R
Sbjct: 96 LKDAVLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT 155
Query: 118 APTHEEIVSVLTNICKKE 135
T +I++ L N+ +KE
Sbjct: 156 KLTDAQILARLMNVIEKE 173
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 51/220 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRPN+L ++ H + + PHLL YGP G GK T I+AL + +YG
Sbjct: 47 WVEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGIK 106
Query: 62 -------------------------------------------------PVIILNETDHL 72
+IIL+E D +
Sbjct: 107 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIILDEADAM 166
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T AQ ALRR MEKY R + AN ++ PA+ SRC R +I S++ +
Sbjct: 167 TATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRSLVDKVI 226
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+ E + I PE L + S ++RRA+ + +A P
Sbjct: 227 EAENVRIQPEATESLVRLSKGDMRRALNVLQACHASSIPL 266
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 89/210 (42%), Gaps = 48/210 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV KYRP + + + + L+ L G+ PHLLFYGP G GK + I+A+ ++YGP
Sbjct: 13 WVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPE 72
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 73 LIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEADSMTSD 132
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRT+E T R L N +S++I + SRC R E + L I +E
Sbjct: 133 AQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKYISIQE 192
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
G+ + SD ++R+AI +++
Sbjct: 193 GIKCTDSVYQAIQTVSDGDMRKAITYLQSA 222
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 50/211 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME + R N +S++I + SRC R P EE++S + +I +
Sbjct: 131 AQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEVMSKRILHIGNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
EGL++ E L+ S +LRRAI +++
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSA 220
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 107/264 (40%), Gaps = 59/264 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + + PHLL YGP G GK + I+AL + +YG
Sbjct: 45 WVEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIYGSK 104
Query: 63 ---------------------------------------------------VIILNETDH 71
+IIL+E D
Sbjct: 105 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDEADA 164
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131
+T AQ ALRR MEKY R + AN ++ PA+ SRC R ++I S++ +
Sbjct: 165 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLV 224
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI-----DQQIVEPDWKIY 186
+KE + I PE L + S ++RRA+ + +A P + DQ EP+ +
Sbjct: 225 IEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAPKDQPRPEPE--LI 282
Query: 187 IRDTAKLIISEQSPKKLLEVRTRL 210
T I+ P + E+ T L
Sbjct: 283 TNGTIYDCIAAPHPADIQEIMTTL 306
>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
Length = 361
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 49/211 (23%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62
V+KYRP++L+++ + + +R ++ G PHLLFYGP G GK + I+AL KE+YG
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPPGTGKTSTIIALAKEIYGATN 85
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNV 145
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ +LRR +EK+ CR + AN ++ PA+ SRC R I L + KE
Sbjct: 146 AQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKE 205
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEASK 166
+ I PE L + S+ ++RRA+ + ++ K
Sbjct: 206 NVNISPEAIDALLKLSNGDMRRALNVLQSCK 236
>gi|403223028|dbj|BAM41159.1| replication factor [Theileria orientalis strain Shintoku]
Length = 331
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 47/206 (22%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W++KYRPN+L ++ + + L+ + KEG+ P+LL GP G GK T ++ L +E+
Sbjct: 5 IDIWIEKYRPNSLDQIIGNPEITKRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLAREML 64
Query: 61 G----------------------------------------PVIILNETDHLTREAQQ-- 78
G ++IL+E D +T AQQ
Sbjct: 65 GLQFKNAVIELNASDDRGVEVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEAAQQWL 124
Query: 79 -----ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
ALRR ME Y T R L N +++I I+SRC IR ++I+ L +IC
Sbjct: 125 TIQLKALRRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRYSKLKDDQILKRLVDICG 184
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI 159
E L E L +D +LRRA+
Sbjct: 185 MENLNYTNEGMEALLFSADGDLRRAV 210
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W +KYRP L + + L+ L+ D PHLLFYGP G GK + +A +L+
Sbjct: 36 WTEKYRPKTLDDIAHQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSTALAFCHQLFPKS 95
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+IIL+E D +TREAQ
Sbjct: 96 IFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSGGKEDVLKLKIIILDEVDAMTREAQS 155
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
A+RR +E Y T R IL N +S++IP + SRC R + E V L IC EG
Sbjct: 156 AMRRVIEDYSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAEGAP 215
Query: 139 IPPEFALRLAQQSDRNLRRAI 159
+ E ++ + ++ +LRRA+
Sbjct: 216 MTDEELKQVMEYAEGDLRRAV 236
>gi|332255015|ref|XP_003276631.1| PREDICTED: replication factor C subunit 2 [Nomascus leucogenys]
Length = 322
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 40 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 99
Query: 63 ----VIILNET-DHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117
V+ LN + D +T AQQALRRTME Y T R L N+ ++I I+SRC +R
Sbjct: 100 LKDAVLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT 159
Query: 118 APTHEEIVSVLTNICKKE 135
T +I++ L N+ +KE
Sbjct: 160 KLTDTQILTRLMNVIEKE 177
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L H + + + E PHLLFYGP G GK + I+A ++LY
Sbjct: 13 WVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTSA 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 QFNSMVLEMNASDDRGINIVRGQILSFASTGTMYKSGFKLIILDEADAMTNDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + ++I+ L I K+E L + +
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
L S ++R+ + + +++
Sbjct: 193 KQALITLSGGDMRKVLNVLQST 214
>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 334
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L L + + +R +++ G P+L+F GP G GK + I L +EL G
Sbjct: 3 WVEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLGDK 62
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQA+RRT
Sbjct: 63 YKEAVLEMNASDERGIDVVRNKIKMFAQKKVTLAPGRTKLVILDEADSMTTAAQQAMRRT 122
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N+ +VI I+SRC +R T +++ L + + E +T P+
Sbjct: 123 MEIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAEKVTYVPKG 182
Query: 144 ALRLAQQSDRNLRRAI 159
+ +D ++R+A+
Sbjct: 183 LEAIVFTADGDMRQAL 198
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 142/326 (43%), Gaps = 75/326 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L L H + + + + PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQ 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 QFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + ++++ L I + E + I +
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDG 192
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQ-------------QYPFQID-QQIVEPDWK-IYIR 188
L + ++R+ + + +++ + YP + D +QI++ +
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLE 252
Query: 189 DTAKLIISEQSPKKLL--EVRTRLYELLVH-SIPVNVLFKYLLEGLLANCDSDLKSKSIE 245
D+ K + S + + L ++ T L+ ++ +P++V+ K +++
Sbjct: 253 DSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVK---------------- 296
Query: 246 MAAMFEHRIHKGSKPIFHIEAYVASF 271
A E R+ KG + A VA+F
Sbjct: 297 -LAQIEERLAKGCTEVAQTAALVAAF 321
>gi|270015972|gb|EFA12420.1| replication factor C 40kD subunit [Tribolium castaneum]
Length = 512
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W++KYRP Q++ + N L + K+G+ P+L+ GP G GK T I+ L + L GP
Sbjct: 196 WIEKYRPQTFQEIVGNEDTTNRLSVIAKQGNLPNLIIAGPPGVGKTTTILCLARILLGPA 255
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T AQQALRRT
Sbjct: 256 FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIIILDEVDSMTEGAQQALRRT 315
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N +VI AI+SRC +R T ++++ + +C++E + +
Sbjct: 316 MEIYSNTTRFALACNYSEKVIEAIQSRCAILRYSRLTDAQVLARVIQVCQQESVEYTQDG 375
Query: 144 ALRLAQQSDRNLRRAI 159
+ + ++R+A+
Sbjct: 376 LEAIVFTAQGDMRQAL 391
>gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 424
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 97/220 (44%), Gaps = 53/220 (24%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--- 61
V+KYRPN+L+++ H + + + + PHLL YGP G GK + I+AL + +YG
Sbjct: 73 VEKYRPNSLEEVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVNN 132
Query: 62 ------------------------------------------------PVIILNETDHLT 73
+IIL+E D +T
Sbjct: 133 MRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPTTKSESTLGAFKLIILDEADAMT 192
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-IC 132
AQ ALRR MEKY R + AN ++ PA+ SRC R +P EE + VL + +
Sbjct: 193 ATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRF-SPLKEEDIRVLVDQVV 251
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+KE + I PE L Q S ++RRA+ + +A P
Sbjct: 252 EKEQVRIQPEAIDSLVQLSKGDMRRALNVLQACHASSIPL 291
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 139/329 (42%), Gaps = 81/329 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L L H + + + + PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQ 72
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T +AQ ALRR
Sbjct: 73 QFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRI 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EKY R + N +S++IPA++SRC R + ++++ L I + E + I +
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITDDG 192
Query: 144 ALRLAQQSDRNLRRA------------------ILMCEASKVQQYPFQIDQQIVEPDWKI 185
L + ++R+ + MC ++Q QI + ++ +
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGN--- 249
Query: 186 YIRDTAKLIISEQSPKKLL--EVRTRLYELLVH-SIPVNVLFKYLLEGLLANCDSDLKSK 242
+ D+ K + S + + L ++ T L+ ++ +P++V+ K +++
Sbjct: 250 SLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVK------------- 296
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
A E R+ KG + A VA+F
Sbjct: 297 ----LAQIEERLAKGCTEVAQTAALVAAF 321
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKRVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRSRVLELNASDERGIQVVREKVKSFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L S+ +LR+AI +++
Sbjct: 220 VKITNEGIAYLINVSEGDLRKAITFLQSA 248
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 51/207 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + LR L + PH+LFYGP G GK + I+AL ++L+GP
Sbjct: 27 WVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPD 86
Query: 63 --------------------------------------------------VIILNETDHL 72
+IIL+E D +
Sbjct: 87 NFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADSM 146
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
T++AQ ALRR ME Y R L N ++++I + SRC R E S LT I
Sbjct: 147 TQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYIA 206
Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAI 159
K+E + + L S+ +LRRAI
Sbjct: 207 KEEQIDVDTSVIDALITVSNGDLRRAI 233
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ + + LR ++ GD P++L YGP G GK + I+A ++++G
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDM 91
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 92 FKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQ 151
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I I SRC R A ++++ L IC EG+
Sbjct: 152 SALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGDDKVIDRLKYICAMEGV 211
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
I + + + S +LRRAI
Sbjct: 212 KIEEDAYKSIVKISGGDLRRAI 233
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 40/203 (19%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---- 60
V+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 61 --------------------GPV----------------IILNETDHLTREAQQALRRTM 84
GP+ +IL+E D +T++AQ ALRR +
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI 121
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 122 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 181
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 182 KALVTLSSGDMRRALNILQSTNM 204
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 87/202 (43%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + LR L GDFP+LL YGP G GK + I+A ++L+G
Sbjct: 35 WVEKYRPKTVEDVVEQGEVVEVLRQCLSGGDFPNLLLYGPPGTGKTSTILAAARQLFGSM 94
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 95 FKERILELNASDERGIQVVREKVKKFAQLTAGNTRPDGKPCPPFKIIILDEADSMTDAAQ 154
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK T R L N +S++I + SRC R E+I+ L IC +E L
Sbjct: 155 SALRRTMEKESQTTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYICGEEDL 214
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
+ S +LRRAI
Sbjct: 215 KAEKSVLKLVVDASGGDLRRAI 236
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + LR L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKIGNEEIAYLVKISEGDLRKAITFLQSA 248
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 48/210 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + + + N L+ + G PHLLFYGP G GK + +AL + L+GP
Sbjct: 30 WVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFGPD 89
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
VIIL+E D +T +
Sbjct: 90 TYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMTPD 149
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
AQ ALRRTME Y T R L N ++++I + SRC R A ++ L+ I ++E
Sbjct: 150 AQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREE 209
Query: 136 GLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I + + S ++R+A+ +++
Sbjct: 210 DVKIAADGLQAIVDLSGGDMRKAVTAMQSA 239
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
Length = 326
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+ + ++G+ P+L+F GP G GK T IMA+ E+ G
Sbjct: 11 WVEKYRPQKLADVVGNQDAIGRLQVIARDGNMPNLIFSGPPGIGKTTCIMAMAHEMLGAL 70
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V+IL+E D +T AQQALRRT
Sbjct: 71 AKEAVLELNASDDRGIDVVRNKIKMFAQKKLTLPRGRHKVVILDEADSMTSGAQQALRRT 130
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y ++ R L N SQ+I I+SRC +R + ++I++ L + E + PE
Sbjct: 131 MEIYSSSTRFGLACNLSSQIIEPIQSRCAIVRFTRLSEQDILARLLKVAAAEKVPYVPEG 190
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 191 LEAVVFTADGDMRQALNNLQAT 212
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + H + +++ PHLLFYGP G GK + I+A+ + +YGP
Sbjct: 28 WVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGPE 87
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D +T+ AQ ALRR +
Sbjct: 88 YRKQILELNASDDRGIDVVREQIKQFAETRTLFSKGFKLVILDEADMMTQAAQAALRRVI 147
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + N + ++ PAI+SRC R +E+ + + + EG+TI P+
Sbjct: 148 EQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERRVDLVIEAEGVTITPDGK 207
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + + ++RR + + +A
Sbjct: 208 AALLRLARGDMRRVLNVLQA 227
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 45/201 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W +KYRP L + + L+ L+ D PHLLFYGP G GK + +A ++L+
Sbjct: 18 WTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCRQLFPSS 77
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+IIL+E D +TREAQ
Sbjct: 78 IFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKEDVLRLKIIILDEVDAMTREAQA 137
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
A+RR +E + T R IL N +S++IP + SRC R + E V L IC EG
Sbjct: 138 AMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAEGTP 197
Query: 139 IPPEFALRLAQQSDRNLRRAI 159
+ + ++ + S+ +LRRA+
Sbjct: 198 MSEDELKQVMEYSEGDLRRAV 218
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 43/222 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYGP
Sbjct: 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+++L+E D +T++AQ ALRR
Sbjct: 101 YRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRR 160
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+EKY + R L N ++++IPA++SRC R + L ++ + E L +
Sbjct: 161 VIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDC 220
Query: 143 FALRLAQQSDRNLRRAILMCEASKV--QQYPFQIDQQIVEPD 182
L + S+ ++R+A+ + +++ + ++ + +QI E D
Sbjct: 221 GLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEED 262
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 129/319 (40%), Gaps = 57/319 (17%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L + + L + ++ G+ PHLLF G +G GK T + L +E +
Sbjct: 6 TIWIEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFFR 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 DSWQMNFRELNASDERGIDVVRNQIKQFARTTPLGEATFKILFLDEADALTTDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E + + I +EGLTI
Sbjct: 126 TMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRRIASREGLTITDG 185
Query: 143 FALRLAQQSDRNLRRAILMCEASKV--------QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + ++R+AI + + + + Y + E D + + T
Sbjct: 186 AMDAIVYIAQGDMRKAINALQGAAIINPAIDEKRVYSITSTARPEEIDELLSLSLTGDFD 245
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHR 253
+E +LL R I N L + LL +LK + I+ + R
Sbjct: 246 GAESLLAQLLHER---------GIAPNELINQMYRALLKREMPRELKVRLIDHLGESDFR 296
Query: 254 IHKGSKPIFHIEAYVASFM 272
+ +G+ +EA VA F+
Sbjct: 297 LSEGANSDIQMEALVARFV 315
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + L+ + + G+ P+L+F GP G GK T I+AL EL GP
Sbjct: 18 WVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELLGPN 77
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D +T AQQALRRT
Sbjct: 78 FKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVLLDEADSMTAGAQQALRRT 137
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N S++I I+SRC +R + EI+ L + + E + PE
Sbjct: 138 MEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEAEKVPYVPEG 197
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ +D ++R+A+ +A+
Sbjct: 198 LEAVVFTADGDMRQALNNLQAT 219
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|225718574|gb|ACO15133.1| Replication factor C subunit 2 [Caligus clemensi]
Length = 325
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W++KYRP + + + + L+ ++G+ P+++ GP G GK T I+ L + L G
Sbjct: 12 WIEKYRPKTFDDIVGNSETVSRLKVFSEDGNPPNIIIAGPPGVGKTTTILCLARALLGGS 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I+L+E D +T AQQALRRT
Sbjct: 72 FKDAVLELNASNERGIDVVRNKIKMFAQQKVTLPQSRHKIIVLDEADSMTEAAQQALRRT 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L NS +VI I+SRC +R P+ E+++ + +C KEG++ E
Sbjct: 132 MEIYSDTTRFCLACNSSEKVIEPIQSRCAMLRYSRPSDAEVLAQVIKVCDKEGVSYTSEG 191
Query: 144 ALRLAQQSDRNLRRAI 159
+ + ++R+A+
Sbjct: 192 LEAIVFTAQGDMRQAL 207
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 135/317 (42%), Gaps = 66/317 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + L+ L + PH+LFYGP G GK + I+AL K+L+GP
Sbjct: 17 WVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFGPN 76
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 77 LSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIILDEADSMT 136
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R +++ ++ L I +
Sbjct: 137 NDAQSALRRTMETYSGMTRFCLICNYITRIIDPLASRCSKFRFKLLNNDDGLNRLKYIAE 196
Query: 134 KEGLTIPPEFAL--RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA 191
+E LT+ E + ++ S +LR+AI +++ + Q+I IR+TA
Sbjct: 197 QEDLTLDQEEPVLQQVLDISGGDLRKAITYLQSASKLSNSYDEHQEISGK----LIRETA 252
Query: 192 KLIISE--------QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKS 243
++ E K ++ + E+++ + L L + L+ + D +K+
Sbjct: 253 GVLYEEIIDELVNVIKGKNHTQISNYVNEIILQGWSIQQLISQLHDKLILDDSIDSLTKN 312
Query: 244 IEMAAMFE--HRIHKGS 258
+FE R++ GS
Sbjct: 313 QIAINLFETDKRLNNGS 329
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 40/203 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP+ L + H + + L + P+LL YGP G GK + I+A+ KELYGP
Sbjct: 32 MWVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKELYGP 91
Query: 63 ----------------------------------------VIILNETDHLTREAQQALRR 82
+IIL+E D +T++AQ ALRR
Sbjct: 92 QFSQMTLELNASDDRGIDVVRNEISAFASTMRFGSNAGFKLIILDECDSMTKDAQFALRR 151
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
+EKY R L N +S+VIPA++SRC R + + + ++E L I +
Sbjct: 152 IIEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQFVVRQENLQITDD 211
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
+ + ++RR + + ++S
Sbjct: 212 AIDAVTRLGAGDMRRTLNILQSS 234
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 43/206 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + + L++ +K + PHLLF GP G GK +++ KEL+
Sbjct: 20 IWIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFAD 79
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 80 SWRENFTELNASDERGIDVVRTKIKSFAKTSPIGGADFKIIFLDEADALTSDAQAALRRT 139
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y CR IL N S++I I+SRC R + + + + + EG+ + +
Sbjct: 140 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGIEVATDG 199
Query: 144 --ALRLAQQSDRNLRRAILMCEASKV 167
A++ Q D +R+AI +A+ +
Sbjct: 200 MEAIKYVAQGD--MRKAINALQAASL 223
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 39/196 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWV+++RP + ++ L ++ +FPHLLF GP G GK T MAL K+++G
Sbjct: 15 LWVERHRPQAVSEIRGQHAIVQRLAVYSEKKEFPHLLFAGPPGTGKTTAAMALTKDVFGE 74
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRR
Sbjct: 75 EYRRNLLEMNASDERKLESIRTKVKQFARTSPYGGAQFKIIFLDEADALTNDAQGALRRI 134
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y TCR IL N S++I I+SRC R + ++ + + ++ + EG+ + +
Sbjct: 135 MEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPLSDADVNAQIHHVAEIEGVKLEDDA 194
Query: 144 ALRLAQQSDRNLRRAI 159
L + S +LR+A+
Sbjct: 195 GDALTRISQGDLRKAL 210
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L+ + H + + PHLLFYGP G GK + I+AL + +YG
Sbjct: 48 WVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGSK 107
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T
Sbjct: 108 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMTST 167
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-ICKK 134
AQ ALRR MEKY R + AN ++ PA+ SRC R +P E + VL + + +
Sbjct: 168 AQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRF-SPLKEADIRVLVDKVIAE 226
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRD 189
E + I E L + S ++RRA+ + +A P I Q + + K +RD
Sbjct: 227 ENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHI-QGTPKLEEKDIVRD 280
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
W +KYRP L ++ H + + G PHLLF+GP G GK + I+AL KELYG
Sbjct: 15 WTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPHLLFHGPPGTGKTSTILALAKELYGLN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
++I++E D +T++AQ ALRR M
Sbjct: 75 FSNMVLELNASDARGINVVRDEIQSFASTMRPFSTTFKLVIMDECDSMTKDAQFALRRIM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R L N S+VIPA++SRC R +++ L +I E +I
Sbjct: 135 EKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQRLRHIVNSENFSISDNSL 194
Query: 145 LRLAQQSDRNLRRAI 159
+ + + ++R+ +
Sbjct: 195 ATIQKLGEGDMRKTV 209
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 43/195 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H N ++ + E PHLLFYGP G GK + I+A+ K+LY
Sbjct: 13 WVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPDK 72
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
G + +IL+E D +T++AQ ALRR
Sbjct: 73 QFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSGFKLVILDEADAMTQDAQNALRRV 132
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
MEK+ R L N ++++IPA++SRC R + ++++ L ++ + E + + +
Sbjct: 133 MEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDG 192
Query: 144 A---LRLAQQSDRNL 155
LRLAQ R +
Sbjct: 193 RKSLLRLAQGDMRKV 207
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 53/260 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP++L ++ H + + PHLL YGP G GK T I+AL + +YG
Sbjct: 46 WVEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGSK 105
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 106 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILDEADAMT 165
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
AQ ALRR MEKY R + AN ++ PA+ SRC R +I S++ + +
Sbjct: 166 ATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVDKVIE 225
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE---PDWKIYIRDT 190
E + I P+ L + S ++RRA+ + +A P + E P+ ++ DT
Sbjct: 226 AENVRIQPQAIESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKEQPPPEHELITDDT 285
Query: 191 AKLIISEQSPKKLLEVRTRL 210
I+ P + E+ T L
Sbjct: 286 IYNCIAAPHPSDIREIMTTL 305
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVSVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VIISNEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 93/205 (45%), Gaps = 50/205 (24%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP ++ + + L N L+ + PH+LFYGP G GK T +A+ +L+GP
Sbjct: 11 WVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T +
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTED 130
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKK 134
AQ ALRRTME + R N +S++I + SRC R P EE++S + +I +
Sbjct: 131 AQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEEVMSKRILHIGNE 189
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAI 159
EGL++ E L+ S +LRRAI
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAI 214
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 120/287 (41%), Gaps = 74/287 (25%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP+ L + H + ++ PHLL YGP G GK + I+AL +++YG
Sbjct: 45 WVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGVK 104
Query: 62 -------------------------------------------------PVIILNETDHL 72
+IIL+E D +
Sbjct: 105 NVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEADAM 164
Query: 73 TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-I 131
T AQ ALRR MEKY R + AN ++ PA+ SRC R +P E+ + VL + +
Sbjct: 165 TAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRF-SPLKEQDIRVLVDQV 223
Query: 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA 191
+KE + I P+ L + S ++RRA+ + +A P +RD
Sbjct: 224 IEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLP-------------LRDVP 270
Query: 192 KLIISEQSPKKLLEVRT--RLYELLVHSIPVNVLFKYLLEGLLANCD 236
K +Q P + E T +Y + P+++ K ++E LL+ D
Sbjct: 271 K----DQQPAREPETITDDTIYTCIAAPRPLDI--KTIMETLLSTSD 311
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + ++ ++ PHLLFYGP G GK T IMA+ K LYG
Sbjct: 23 WVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGSS 82
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
++IL+E D++T AQ ALRR +
Sbjct: 83 HSSMVLELNASDDRGINVVREQIKVFAGTKKLFHTGVKLVILDEADNMTNAAQFALRRII 142
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R L N +S++IPA++SRC R + I S L I ++E + +
Sbjct: 143 EKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQENVEFDDDGV 202
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
L S ++RR I + +A+
Sbjct: 203 AALLALSRGDMRRVINVLQAT 223
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L+ + H + + PHLLFYGP G GK + I+AL + +YG
Sbjct: 48 WVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGSK 107
Query: 63 -----------------------------------------------VIILNETDHLTRE 75
+IIL+E D +T
Sbjct: 108 NMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMTST 167
Query: 76 AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-ICKK 134
AQ ALRR MEKY R + AN ++ PA+ SRC R +P E + VL + + +
Sbjct: 168 AQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRF-SPLKEADIRVLVDKVIAE 226
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRD 189
E + I E L + S ++RRA+ + +A P I Q + + K +RD
Sbjct: 227 ENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHI-QGTPKLEEKDIVRD 280
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + LR L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I +KE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKIGNEEIAYLVKISEGDLRKAITFLQSA 248
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP N+ + + LR ++ GD P++L YGP G GK + I+A ++++G
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDM 91
Query: 63 ---------------------------------------------VIILNETDHLTREAQ 77
+IIL+E D +T AQ
Sbjct: 92 FKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQ 151
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I I SRC R A ++++ L IC EG+
Sbjct: 152 SALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICGLEGV 211
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
I + + + S +LRRAI
Sbjct: 212 KIEEDAYKSIVKISGGDLRRAI 233
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 47/210 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP+NL+++ + + +R ++ PHLLFYGP G GK + I+AL KE+YG +
Sbjct: 11 WVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKEIYGSI 70
Query: 64 -----------------------------------------------IILNETDHLTREA 76
IIL+E D +T A
Sbjct: 71 NYKDMILELNASDDRGIDVVRNQIKNFASTRQIFTKNNSINNDQFKLIILDEADAMTNIA 130
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q +LRR +EK+ CR + AN ++ PA+ SRC R I L + KE
Sbjct: 131 QNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNIVIIKEN 190
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEASK 166
+ I + L + S+ ++RRA+ + ++ K
Sbjct: 191 VNISSDAIDALLKLSNGDMRRALNVLQSCK 220
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 46/202 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ + + L+ L+ D P+LLFYGP G GK + I+A ++L+G +
Sbjct: 36 WVEKYRPRTIDEVSYQEEVVAVLQKSLQGADLPNLLFYGPPGTGKTSTILAAARDLFGDI 95
Query: 64 ----------------------------------------------IILNETDHLTREAQ 77
+IL+E D +T AQ
Sbjct: 96 YKDRVLELNASDERGIQVVREKVKIFSQRTVSSVRPDGKQCPPFKIVILDEADSMTGAAQ 155
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
ALRRTMEK + R L N +S++I + SRC R E +V L +IC E +
Sbjct: 156 AALRRTMEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIAENM 215
Query: 138 TIPPEFALRLAQQSDRNLRRAI 159
+ E L + S+ +LRRAI
Sbjct: 216 SCSEEVLESLIEASEGDLRRAI 237
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L+ + H + +++ PHLLFYGP G GK + I+A+ + +YG
Sbjct: 30 WVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGSD 89
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T++AQ ALRR +
Sbjct: 90 YKKQILELNASDDRGIDVVREQVKQFAETRTLFSKGYKLIILDEADMMTQQAQAALRRVI 149
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + N ++++ PAI+SRC R E+ + + + E + + PE
Sbjct: 150 EQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAENVQLTPEGK 209
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S ++RRA+ + +A
Sbjct: 210 QALLKLSKGDMRRALNVLQA 229
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,067,412,512
Number of Sequences: 23463169
Number of extensions: 153513887
Number of successful extensions: 753954
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4304
Number of HSP's successfully gapped in prelim test: 1235
Number of HSP's that attempted gapping in prelim test: 745014
Number of HSP's gapped (non-prelim): 9030
length of query: 287
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 146
effective length of database: 9,050,888,538
effective search space: 1321429726548
effective search space used: 1321429726548
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)