BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2281
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 146/260 (56%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+S+CL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP N++ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 39/201 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + L++ +K G PHLLF GP G GK T +AL +EL+G
Sbjct: 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRRTM
Sbjct: 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + + R IL N S++I I+SRC R E+I L I + EGL + E
Sbjct: 135 EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 194
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
+ ++ ++RRAI + +A+
Sbjct: 195 QAILYIAEGDMRRAINILQAA 215
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 53/313 (16%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L ++ + L+ ++ + PHLLF GP G GK +AL ++L+G
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y +CR IL N +S++I I+SRC R E + L IC+KEG+ I +
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQ 198
L S + R+AI + + ++V+ D I TA+ +I
Sbjct: 186 LEALIYISGGDFRKAINALQGAAAI-------GEVVDADTIYQITATARPEEMTELIQTA 238
Query: 199 SPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDSD-LKSKSIEMAAMFEHRIHK 256
+E R L L+V + + + L +++ D LK + I+ + R+ +
Sbjct: 239 LKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTE 298
Query: 257 GSKPIFHIEAYVA 269
G+ ++AY+A
Sbjct: 299 GANERIQLDAYLA 311
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + S+C R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 39/198 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+WV+KYRP L ++ + L+ ++ + PHLLF GP G GK +AL ++L+
Sbjct: 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63
Query: 61 G---------------------------------------PVIILNETDHLTREAQQALR 81
G +I L+E D LT +AQ ALR
Sbjct: 64 GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y +CR IL N +S++I I+SRC R E + L IC+KEG+ I
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 142 EFALRLAQQSDRNLRRAI 159
+ L S + R+AI
Sbjct: 184 DGLEALIYISGGDFRKAI 201
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ S+C R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L + + + + L+ + K+G+ PH++ G G GK T + L EL G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS 70
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 71 YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRT 130
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R N +++I ++S+C +R + E+++ L I K E + +
Sbjct: 131 MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 190
Query: 144 ALRLAQQSDRNLRRAI 159
+ ++ ++R+AI
Sbjct: 191 LEAIIFTAEGDMRQAI 206
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 41/174 (23%)
Query: 7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPS-GAGKKTRIMALLKELY----- 60
KYRP+ + + +++ +G PH++ + PS G GK T AL ++
Sbjct: 19 KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78
Query: 61 ------------GP---------------VIILNETDHLT-REAQQALRRTMEKYITTCR 92
GP VI+++E D E+Q+ LR ME Y + C
Sbjct: 79 VNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCS 138
Query: 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-------LTNICKKEGLTI 139
+I+ AN++ +I ++SRC I PT E+ + + LT ICK EG+ I
Sbjct: 139 IIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI 192
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 3 LWVDKYRPNNLQKL---------------DFHCKQANHLRNLLKEGD--FPHLLFYGPSG 45
LW KY P NLQ++ ++ + N ++ K+G F + YGP G
Sbjct: 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG 87
Query: 46 AGKKTRIMALLKELYGPVIILNETD 70
GK T + +EL ++ N +D
Sbjct: 88 IGKTTAAHLVAQELGYDILEQNASD 112
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +++E L+R + AL +T+E+ + +L ++ I SRCL + A E
Sbjct: 144 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 203
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+I L +I +E + P LA+ ++ +LR A+ + + + + Q+ Q V
Sbjct: 204 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 259
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +++E L+R + AL +T+E+ + +L ++ I SRCL + A E
Sbjct: 129 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 188
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I L +I +E + P LA+ ++ +LR A+ + DQ I D
Sbjct: 189 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSL------------TDQAIASGD 236
Query: 183 WKIYIRDTAKLI 194
++ + + ++
Sbjct: 237 GQVSTQAVSAML 248
>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1128
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 85 EKYITTCRLI---------LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK-- 133
E+Y C L+ L +N MSQ PAI C I A +I + L I K
Sbjct: 991 EEYKIACLLMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTIHKGS 1050
Query: 134 -----KEGLTIPPEFALRLAQQSDRNL---RRAILMCEASKVQQYPF 172
KE L + L++ Q++D+ R ++ + VQ+ PF
Sbjct: 1051 IEDRLKEFLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPF 1097
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +++E L+R + AL +T+E+ + +L ++ I SRCL + A E
Sbjct: 125 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 184
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+I L +I +E + P LA+ ++ +LR A+ + + + + Q+ Q V
Sbjct: 185 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 240
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +++E L+R + AL +T+E+ + +L ++ I SRCL + A E
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+I L +I +E + P LA+ ++ +LR A+ + + + + Q+ Q V
Sbjct: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 237
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +++E L+R + AL +T+E+ + +L ++ I SRCL + A E
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+I L +I +E + P LA+ ++ +LR A+ + + + + Q+ Q V
Sbjct: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 237
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V +++E L+R + AL +T+E+ + +L ++ I SRCL + A E
Sbjct: 144 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALDVE 203
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+I L +I +E + P LA+ ++ +LR A+ + + + + Q+ Q V
Sbjct: 204 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAV 259
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 12 NLQKLDFH-----CKQANHLRNLLKEGDFPH--LLFYGPSGAGKKTRIMALLKEL 59
N +LD H ++ R L+K PH +L GP+G+GK T + A L+EL
Sbjct: 140 NATRLDLHSLGXTAHNHDNFRRLIKR---PHGIILVTGPTGSGKSTTLYAGLQEL 191
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
NL+K K + + +K+G+F LL GPSG GK T ++ +L +Y P
Sbjct: 8 NLKKYFGKVKAVDGVSFEVKDGEFVALL--GPSGCGKTTTLL-MLAGIYKP 55
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKT--RIMALLKE 58
NL K + N L +K+G+F L+ GPSG GK T R++A L+E
Sbjct: 16 NLTKRFGNFTAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEE 62
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKT--RIMALLKE 58
NL K + N L +K+G+F L+ GPSG GK T R++A L+E
Sbjct: 17 NLTKRFGNFTAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEE 63
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEKYITTCRLI 94
+L YGP G GK A+ E ++N + +++ E++ LR+ E+ I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 95 LCANSMSQVIP 105
+ + + + P
Sbjct: 301 IFIDELDAIAP 311
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEKYITTCRLI 94
+L YGP G GK A+ E ++N + +++ E++ LR+ E+ I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 95 LCANSMSQVIP 105
+ + + + P
Sbjct: 301 IFIDELDAIAP 311
>pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 23/121 (19%)
Query: 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR--AILMCEASKVQQYPFQIDQ 176
PT + +V+ + CK + I ALR A+ ++ N +R A++M
Sbjct: 43 PTLQNVVATVNLSCKLDLKNI----ALR-ARNAEYNPKRFAAVIM--------------- 82
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF-KYLLEGLLANC 235
+I EP I + K++I+ +K + + Y ++H + N F + ++ ++++C
Sbjct: 83 RIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSC 142
Query: 236 D 236
D
Sbjct: 143 D 143
>pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 23/121 (19%)
Query: 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR--AILMCEASKVQQYPFQIDQ 176
PT + +V+ + CK + I ALR A+ ++ N +R A++M
Sbjct: 43 PTLQNVVATVNLSCKLDLKNI----ALR-ARNAEYNPKRFAAVIM--------------- 82
Query: 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF-KYLLEGLLANC 235
+I EP I + K++I+ +K + + Y ++H + N F + ++ ++++C
Sbjct: 83 RIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSC 142
Query: 236 D 236
D
Sbjct: 143 D 143
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 30 LKEGDFPHLLFYGPSGAGKKTR---IMALLKELYGPVIILN-ETDHLTREAQQALRR 82
+KEG+F ++ GPSG+GK T I L K G V I N +T+ L + +RR
Sbjct: 28 IKEGEFVSIM--GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEKYITTCRLI 94
+L YGP G GK A+ E ++N + +++ E++ LR+ E+ I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 95 LCANSMSQVIP 105
+ + + + P
Sbjct: 301 IFIDELDAIAP 311
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEKYITTCRLI 94
+L YGP G GK A+ E ++N + +++ E++ LR+ E+ I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 95 LCANSMSQVIP 105
+ + + + P
Sbjct: 301 IFIDELDAIAP 311
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEKYITTCRLI 94
+L YGP G GK A+ E ++N + +++ E++ LR+ E+ I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 95 LCANSMSQVIP 105
+ + + + P
Sbjct: 301 IFIDELDAIAP 311
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 30 LKEGDFPHLLFYGPSGAGKKTR---IMALLKELYGPVIILN-ETDHLTREAQQALRR 82
+KEG+F ++ GPSG+GK T I L K G V I N +T+ L + +RR
Sbjct: 28 IKEGEFVSIM--GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRR 82
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEKYITTCRLI 94
+L YGP G GK A+ E ++N + +++ E++ LR+ E+ I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 95 LCANSMSQVIP 105
+ + + + P
Sbjct: 301 IFIDELDAIAP 311
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 32/102 (31%)
Query: 14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY------------- 60
QKL + + A + L+ HLL +GP G GK T + EL
Sbjct: 22 QKLRVYLEAAKARKEPLE-----HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 61 --------------GPVIILNETDHLTREAQQALRRTMEKYI 88
G ++ ++E L+R+A++ L ME ++
Sbjct: 77 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFV 118
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 25 HLRNLLKEGDFPH--LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLT---REAQQA 79
H LK G P +LFYGP G GK A+ E I + + LT E++
Sbjct: 37 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 96
Query: 80 LRRTMEKYITTCRLILCANSMSQVIPA 106
+R +K +L + + + A
Sbjct: 97 VREIFDKARQAAPCVLFFDELDSIAKA 123
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 32/102 (31%)
Query: 14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY------------- 60
QKL + + A + L+ HLL +GP G GK T + EL
Sbjct: 22 QKLRVYLEAAKARKEPLE-----HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 61 --------------GPVIILNETDHLTREAQQALRRTMEKYI 88
G ++ ++E L+R+A++ L ME ++
Sbjct: 77 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFV 118
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 32/102 (31%)
Query: 14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY------------- 60
QKL + + A + L+ HLL +GP G GK T + EL
Sbjct: 22 QKLRVYLEAAKARKEPLE-----HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 61 --------------GPVIILNETDHLTREAQQALRRTMEKYI 88
G ++ ++E L+R+A++ L ME ++
Sbjct: 77 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFV 118
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV---IILNETD 70
N++ +K+G+F LL GPSG+GK T ++ + +Y P I +E D
Sbjct: 20 NNINLKIKDGEFMALL--GPSGSGKST-LLYTIAGIYKPTSGKIYFDEKD 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,658,482
Number of Sequences: 62578
Number of extensions: 279830
Number of successful extensions: 1209
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 58
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)