BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2281
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1
Length = 356
Score = 332 bits (850), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMI 355
>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1
Length = 356
Score = 330 bits (847), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 223/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I SVL+ +C+KEGL +P A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2
Length = 356
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL Y
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 42 G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
G PS AG R++ +LK +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+PAP+ E+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
DQ+I E DW++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
NCD LK + +MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum
GN=rfc3 PE=3 SV=1
Length = 347
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 188/345 (54%), Gaps = 70/345 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
LW+DKY+P +L K+D+H + +L+N++K GDFPHLL YGP
Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61
Query: 44 --------------------------------------SGAGKKTRIMALLKELYGP--- 62
+G+ + I ++KE+
Sbjct: 62 NALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 121
Query: 63 ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
++ILNE D L+++AQ ALRRTMEKY T CRLILC +S ++VI I+SRCL
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181
Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
IR+PAP+ EEI VL + E +P + A+ +A+QS NLR A+++ E+ K +QYPFQ
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241
Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
++ DW+ YI K EQSP +L VR +LYELL H IP ++FK LL +
Sbjct: 242 -STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK 300
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
D ++K + I A+ +EHR GSKPIFH+EA++A FM++Y ++
Sbjct: 301 KLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B14D6.460 PE=3 SV=1
Length = 352
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 181/351 (51%), Gaps = 71/351 (20%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
M+L VDK+RP +L L +H + + LR+L + GDFPHLL Y
Sbjct: 1 MALIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60
Query: 42 GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
GP S G R++ LLKE+
Sbjct: 61 GPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120
Query: 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS + +I IRSRCL
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCL 180
Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
+R+ APTH+EI VL + KKEG I R+A++S RNLRRA+LM EA Q
Sbjct: 181 LVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKV 240
Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
I PDW+ I AK I+ E +P ++L+VR +LY+LL H IP ++ K L L+
Sbjct: 241 TDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLI 300
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
D LK+ I +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 301 PLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMSMD 351
>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc5 PE=1 SV=1
Length = 358
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 169/345 (48%), Gaps = 72/345 (20%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
LW+D+YRP L LD+H + + L +L +FPHLL YGP
Sbjct: 2 LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
Query: 44 -----------------------------------SGAGKKTRIM--ALLKELYGP---- 62
S G R++ LLK++
Sbjct: 62 GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121
Query: 63 --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
V+++N D LTR+AQ ALRRTMEKY RLIL ANS S++I IRSR L +
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181
Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA----SKVQQY 170
R+ APT EEI+ V++ I +GL P +A DRNLR+AIL+ E S +
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241
Query: 171 PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
Q+ PDW+ +I+ ++ EQSP ++L VR+ LY+LL H IP + K LL
Sbjct: 242 LIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF 301
Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
L+ D+ L I+ AA +EHR G+K IFH+EA+VA FM +Y
Sbjct: 302 FLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1
Length = 354
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 146/260 (56%), Gaps = 23/260 (8%)
Query: 36 PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
P+ L PS G RI+ LLKE+ +I+NE + LT++A
Sbjct: 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP+ EI ++L+++ E
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + L R+AQ S+ NLR ++LM E+ + + + I++PDW I I + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
+ E+S L+E R LY+LL H IP N++ K L LL ++ KS IE +++F+
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
R+ G+K IFH+E ++A M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVI 64
+GP +
Sbjct: 61 FGPGV 65
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 55/316 (17%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
+W +KYRP L+ + H + L + +K G+ PHLLF GP G GK +AL +ELYG
Sbjct: 6 IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGE 65
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 66 TWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFLDEADALTSDAQSALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME+Y TCR I+ N S++I I+SRC R +I + +T I K EGL I +
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185
Query: 144 ALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
L + ++RRAI L A+ + + Q I D KL ++ Q
Sbjct: 186 MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQ--- 242
Query: 202 KLLEVRTRLYELLV-----HSIPVNVLFKYLLE-GLLANCDSDLKSKSIEMAAMFEHRIH 255
++ R +L ELL+ + ++ +++ + E GL D D+ ++ + R+
Sbjct: 243 -FMDSRNKLDELLITYGLSGTDIIDQIYRSMFELGL----DEDVLVALVDRIGEADFRLT 297
Query: 256 KGSKPIFHIEAYVASF 271
+G+ IEA +A F
Sbjct: 298 EGASERIQIEALLAHF 313
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 60/319 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LW +KYRP +L ++ + L+ +KE + PHLLF GP G GK T +AL+++LYG
Sbjct: 6 LWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN 65
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
VI+L+E D++T +AQQALRRT
Sbjct: 66 NYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL N +S++I I+SR R E++V+ L I K E + P+
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + ++R+AI + +A+ + VE +K+ IR+ L +S
Sbjct: 186 IETIFDITQGDMRKAINVIQAASA------YGKITVETVYKVLGLAQPKEIREMLHLALS 239
Query: 197 EQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDS---DLKSKSIEMAAMFEH 252
K L+ R +L ELL+ + + + K + + L N S DLK ++ A E
Sbjct: 240 ----GKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEF 295
Query: 253 RIHKGSKPIFHIEAYVASF 271
RI +G+ + A++A
Sbjct: 296 RIMEGADDEIQLSAFLAKL 314
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE L +
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V +I ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---EITEEIV---YKVASKARPDEIKKMTQLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E R +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAREQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE LT+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V + ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIV---YKVASKARPDEIKKMTQLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E R +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAREQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+++W +KYRP L + + N L++ +K GD PHL+F GP+G GK + +AL EL+
Sbjct: 2 INIWTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELF 61
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G +I L+E D LT EAQ ALR
Sbjct: 62 GDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLGFKIIFLDEADQLTNEAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME + +T R I N S++IP I+SRC+ +R E + L I K E I
Sbjct: 122 RTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDD 181
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
+ + + SD ++R+AI + +A
Sbjct: 182 DSLDAIYEISDGDMRKAINVMQA 204
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 51/311 (16%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR +L N S++IP I+SRC R E++V L I +KE LT+
Sbjct: 125 EKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ S+ ++R+AI L A+ +I ++ I+ +L ++ K
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALN----GK 240
Query: 203 LLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHKGS 258
+E R +LY L++ ++L + E + N D K K +E + RI +GS
Sbjct: 241 FVESREQLYNLMIDWGMSGEDILIQIFRE--VPNLDISEKEKVHLVEAIGECDFRIVEGS 298
Query: 259 KPIFHIEAYVA 269
+ A +A
Sbjct: 299 NERIQLSALLA 309
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 47/254 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP NL ++ H + L+N +++ PHLLF G G GK T + L K+LYG
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT 64
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR +L N S++IP I+SRC R E++V L I +KE + +
Sbjct: 125 EKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSGM 184
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSPK 201
+ S+ ++R+AI + + I++ ++ +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTGAAVSK--NINETVI---YKVASKARPDEIKKMTELALNG 239
Query: 202 KLLEVRTRLYELLV 215
K +E R +LY+L++
Sbjct: 240 KFVEAREQLYKLMI 253
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ H + L N +++ PHLLF G G GK T +AL K+LYG
Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET 64
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E+D LT +AQ ALRRTM
Sbjct: 65 WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY CR IL N S++IP I+SRC R E++V L +I +KE LT+
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI 184
Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
+ S+ ++R+AI ++ A+ V + ++IV +K+ + D K +
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIV---YKVASKARPDEIKKMTHLALN 238
Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
K +E + +LY L++ ++L + E + N D K K +E + RI +
Sbjct: 239 GKFVEAKEQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296
Query: 257 GSKPIFHIEAYVA 269
GS + A +A
Sbjct: 297 GSNERIQLSALLA 309
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 61/323 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP +L + L+ +K+ + PHLLF GP G GK T +AL+ +LYG
Sbjct: 8 LWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD 67
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 68 NYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALRRT 127
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL N +S++I I+SR R E++V+ L I K E + +
Sbjct: 128 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKA 187
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
+ + ++R+AI + +AS V + VE +K+ IR+ L +
Sbjct: 188 LETIYDITQGDMRKAINILQASSV------YGKVTVEAVYKVLGLAQPKEIREMIMLALQ 241
Query: 197 EQSPKKLLEVRTRLYELLV-HSIPVNVLFKYL---LEGLLANCDSDLKSKSIEMAAMFEH 252
L+ R +L ELLV + + + K + + G N DLK ++ E+
Sbjct: 242 ----GNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEY 297
Query: 253 RIHKGSKPIFHIEAYVASFMAMY 275
RI +G+ + A +A +A+Y
Sbjct: 298 RIMEGADDEIQLNALLAK-LAVY 319
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L+ + H L++ + D PHLLF GP+G GK +++ KELYG
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD 70
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 71 DWQDNFLELNASDERGIDVVRDRIKDFARSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + L I + EGL +
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGI 190
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++RRAI +A+
Sbjct: 191 DALVYAADGDMRRAINALQAASA 213
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L+ + H L++ + D PHLLF GP+G GK +++ KELYG
Sbjct: 11 IWVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD 70
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
VI L+E D LT +AQ ALRRTM
Sbjct: 71 DWQDNFLELNASDERGIDVVRDRIKDFARSSFGGHNYRVIFLDEADALTDDAQSALRRTM 130
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N S++I I+SRC R + + + L I + EGL +
Sbjct: 131 EQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDGI 190
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++RRAI +A+
Sbjct: 191 DALVYAADGDMRRAINALQAASA 213
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 47/310 (15%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
W +KYRP + ++ + + LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 62 -------------------------------PV-------IILNETDHLTREAQQALRRT 83
PV +IL+E D++T +AQQALRR
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R P P H + L I K EG+ + +
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRH-LMAERLKYIAKSEGVEVKED 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPK 201
+ + S+ ++R+AI + + + +D+ +V IR T + + +
Sbjct: 184 AIDLIYELSEGDMRKAINILQVAAATNKI--VDRNVVAAA-AAAIRPTDIVELFNLALSG 240
Query: 202 KLLEVRTRLYELL-VHSIP-VNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK 259
L+ R ++ EL+ V + V+ + + E + + D + K++ E+ A ++R+ +G+
Sbjct: 241 DYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGAD 300
Query: 260 PIFHIEAYVA 269
+ ++A
Sbjct: 301 EEIQLSYFLA 310
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 39/204 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP NL ++ LR+ + PHLLF G +G GK T +AL +E++G
Sbjct: 7 IWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++ L+E D LT++AQ ALRRT
Sbjct: 67 TWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQAALRRT 126
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y TCR IL N S++I I+SRC R T E I + I KKEG+TI
Sbjct: 127 MENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGA 186
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
+ + S ++R+AI + + +
Sbjct: 187 YVAITYVSLGDMRKAINALQGAAI 210
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 39/196 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
W +KYRP + ++ + + LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE 64
Query: 62 -------------------------------PV-------IILNETDHLTREAQQALRRT 83
PV +IL+E D++T +AQQALRR
Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRI 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y R IL AN +S +I I+SR + IR E ++S L I + EG+ I +
Sbjct: 125 MEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDDA 184
Query: 144 ALRLAQQSDRNLRRAI 159
+ + + ++R+AI
Sbjct: 185 LETIYEFTQGDMRKAI 200
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 90/203 (44%), Gaps = 38/203 (18%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L+ + + D PHLLF GP+G GK T A+ KE+YG
Sbjct: 13 IWIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGD 72
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 73 DWRENFLELNASDQRGIDVVRDRIKSFARASFGGYDHRIIFLDEADALTSDAQSALRRTM 132
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + I EG+ + +
Sbjct: 133 EQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGV 192
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L +D ++R+AI +A+ V
Sbjct: 193 DALVYAADGDMRKAINGLQAAAV 215
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 53/317 (16%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L ++ L++ +K G+ PHLLF G +G GK T +AL +E +G
Sbjct: 6 TIWIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 DSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
TME Y TCR IL N S++I I+SRC R E ++ I EGLT+
Sbjct: 126 TMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEG 185
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISE 197
+ + ++R+AI + + + + ID++ + I TA+ ++
Sbjct: 186 ALDAIVYVASGDMRKAINALQGAAILRT--DIDEETI-----FEITATARPEEIDELLDL 238
Query: 198 QSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIH 255
+ E L EL V I N L L+ + D LK K I+ + R+
Sbjct: 239 SIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLS 298
Query: 256 KGSKPIFHIEAYVASFM 272
+G+ +EA +A F+
Sbjct: 299 EGASSDIQMEALLARFV 315
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + SRC R A + L I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+E + R+ S +LRR I L+ ASK QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 53/313 (16%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+WV+KYRP L ++ + L+ ++ + PHLLF GP G GK +AL ++L+G
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+I L+E D LT +AQ ALRRT
Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y +CR IL N +S++I I+SRC R E + L IC+KEG+ I +
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQ 198
L S + R+AI + + ++V+ D I TA+ +I
Sbjct: 186 LEALIYISGGDFRKAINALQGAAAI-------GEVVDADTIYQITATARPEEMTELIQTA 238
Query: 199 SPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDSD-LKSKSIEMAAMFEHRIHK 256
+E R L L+V + + + L +++ D LK + I+ + R+ +
Sbjct: 239 LKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTE 298
Query: 257 GSKPIFHIEAYVA 269
G+ ++AY+A
Sbjct: 299 GANERIQLDAYLA 311
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L ++ + + L+ +KE + PHLLF GP G GK T L +L+G
Sbjct: 12 LWAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE 71
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQALRRL 131
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R IL AN S++I I+SRC R E+++S L I ++E + I E
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEA 191
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ S+ ++RRAI + +A+
Sbjct: 192 LEAIHDLSEGDMRRAINILQAA 213
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + IR E + + L I + EG+ + +
Sbjct: 124 IMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + + ++RRAI
Sbjct: 184 ALEAIYEFTQGDMRRAI 200
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 43/204 (21%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + +++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFEEVVDLEEVKA-RLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTHEEIVSVLTNICKKEGLTIPP 141
ME Y R IL AN +S++I I SRC R P P H + L I + EG+ +
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRH-LMAERLREIARSEGVELKD 182
Query: 142 EFALRLAQQSDRNLRRAILMCEAS 165
+ + + S+ ++R+AI + + +
Sbjct: 183 DAIDLIYEISEGDMRKAINLLQVA 206
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S +I I+SR + IR E + + L I EG+ I +
Sbjct: 124 IMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDD 183
Query: 143 FALRLAQQSDRNLRRAI 159
+ + + ++RRAI
Sbjct: 184 ALEAIYEFTQGDMRRAI 200
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 125/309 (40%), Gaps = 42/309 (13%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KYRP L + H L++ + D H+LF GP+G GK T A+ +ELYG
Sbjct: 15 VWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD 74
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+I L+E D LT +AQ ALRRTM
Sbjct: 75 DWREHFLELNASDERGIDVVRDRIKNFARTSFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E++ R IL N SQ+I I+SRC R + + + I +E + + +
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 145 LRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLL 204
L +D ++R+AI +A+ V +D+ V + + ++
Sbjct: 195 DALVYAADGDMRKAINGLQAASVSGDT--VDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 205 EVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIF 262
R L LL I + L + + D D + +E ++RI +G+
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERV 312
Query: 263 HIEAYVASF 271
+EA +AS
Sbjct: 313 QLEAMLASL 321
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
LWV+KYRP +L ++ + L+ +K + PHLLF GP G GK T +AL +LYG
Sbjct: 5 LWVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGE 64
Query: 62 --------------------------------------PVIILNETDHLTREAQQALRRT 83
++IL+E D++T +AQQALRRT
Sbjct: 65 SWRDNTLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVILDEADNMTGDAQQALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME + R IL AN S++I I+SRC R + L I ++EG+T+
Sbjct: 125 MELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGA 184
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ ++S +LR+AI +A+
Sbjct: 185 LEAIWEESQGDLRKAINTLQAA 206
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 122/274 (44%), Gaps = 58/274 (21%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M +W +KYRP + + + L++ +++ + PHLLF GP G GK T +AL ELY
Sbjct: 1 MEIWTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELY 60
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G ++ L+E D LTR+AQQALR
Sbjct: 61 GDAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVFLDEADALTRDAQQALR 120
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
R MEKY + R IL N S++I I+SR + E ++ I K EGL +
Sbjct: 121 RIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILEN 180
Query: 142 EFAL--RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199
E + L ++ +LR+AI + +A+ + +D ++Y I S
Sbjct: 181 EDEIINALYDIAEGDLRKAINILQAAAMMSKTITVD--------RLY------EIASIAK 226
Query: 200 PKKLLEVRTRLYE---LLVHSIPVNVLFKYLLEG 230
PK++ EV + + L S+ ++++ KY + G
Sbjct: 227 PKEIDEVLNKAMQGNFLEARSMLIDLMLKYGMSG 260
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP +L ++ + L++ +++ + PHLLF G G GK + +AL EL+
Sbjct: 2 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELF 61
Query: 61 G---------------------------------------PVIILNETDHLTREAQQALR 81
G ++ L+E D LT EAQ ALR
Sbjct: 62 GESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y T R + N S++IP I+SR + +R E I L I K EG TI
Sbjct: 122 RTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDD 181
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
E + + S ++R+AI + +A
Sbjct: 182 ESMEAMVEVSGGDMRKAINVLQA 204
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 54/317 (17%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL + + N L+ + E P+L+F GP+G GK T +AL+K + G
Sbjct: 5 WVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGEY 64
Query: 63 -------------------------------------VIILNETDHLTREAQQALRRTME 85
+I L+E D++T++AQ ALRR ME
Sbjct: 65 WRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRREME 124
Query: 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL 145
Y T IL N S++I I+SRC R EEI + L IC E
Sbjct: 125 MYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDGGIE 184
Query: 146 RLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV-EPDWKIYIRDTAKLIISEQSPKKLL 204
+ ++ ++R+A+ + +A+ + Q+D+ V E K +D LI S +
Sbjct: 185 AIEYFAEGDMRKAVNVLQAAASEGK--QVDEDAVYEVVSKAKPQDVHNLITKALS-GDFM 241
Query: 205 EVRTRLYELLV-----HSIPVNVLF----KYLLEGLLANCDSDLKSKSIEMAAMFEHRIH 255
R L E +V V+ ++ K + EG + ++D+ IE A + RI
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKM---EADIYIDLIEAIADCDFRIR 298
Query: 256 KGSKPIFHIEAYVASFM 272
+G+ P +EA + F+
Sbjct: 299 EGANPRIQLEALLTQFL 315
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 45/298 (15%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR ++ G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R + L +I K EG+ + +
Sbjct: 124 IMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDD 183
Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
+ + S+ ++R+AI + + + + + I D +L +
Sbjct: 184 AIDLIYEVSEGDMRKAINLLQVAAATSKVVDAN-AVASATTMIRPADVVEL-FNLAFNGD 241
Query: 203 LLEVRTRLYELL-VHSIP-VNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
+ + R +L EL+ V I ++ + + E + D ++K++ E+ A ++R+ +GS
Sbjct: 242 VTKAREKLRELMYVKGIAGIDFIRAFQRELIRMPLDDEVKAEIAELLAEVDYRLTQGS 299
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 39/202 (19%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LWV+KYRP +L + L+ +K+ + PHLLF GP G GK T AL +L+G
Sbjct: 8 LWVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGE 67
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+++L+E D++T +AQQALRR
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRL 127
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R IL AN S++I I+SRC R + ++++ L I + EG+ E
Sbjct: 128 MELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEA 187
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + +A+
Sbjct: 188 LDAIYEISEGDMRKAINVLQAA 209
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 41/203 (20%)
Query: 3 LWVDKYRPNNLQKL-DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W +KYRP + ++ D +A LR +K G+ PHLLFYGP G GK T + L +ELYG
Sbjct: 5 FWFEKYRPRSFDEVVDLEEVKA-RLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG 63
Query: 62 --------------------------------PV-------IILNETDHLTREAQQALRR 82
PV +IL+E D++T +AQQALRR
Sbjct: 64 EYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRR 123
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
ME Y R IL AN +S++I I SRC R + L I K EG+ + +
Sbjct: 124 IMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELRED 183
Query: 143 FALRLAQQSDRNLRRAILMCEAS 165
+ + S+ ++R+AI + + +
Sbjct: 184 AINMIYELSEGDMRKAINLLQVA 206
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 81 EFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 140
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNM 224
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 40/204 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 ---------------------GPV----------------IILNETDHLTREAQQALRRT 83
GP+ +IL+E D +T++AQ ALRR
Sbjct: 82 EFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRV 141
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
+EK+ R L N +S++IPA++SRC R T E +V L ++ ++E + I +
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 144 ALRLAQQSDRNLRRAILMCEASKV 167
L S ++RRA+ + +++ +
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNM 225
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W +KYRP +L ++ + L++ +++ + PHLLF G G GK + +AL EL+
Sbjct: 2 IEIWTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELF 61
Query: 61 GP---------------------------------------VIILNETDHLTREAQQALR 81
G ++ L+E D LT EAQ ALR
Sbjct: 62 GDSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALR 121
Query: 82 RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
RTME Y T R I N S++IP I+SR + +R E I L I K EG I
Sbjct: 122 RTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDE 181
Query: 142 EFALRLAQQSDRNLRRAILMCEA 164
E L + S ++R+AI + +A
Sbjct: 182 ESMHALVEVSAGDMRKAINVLQA 204
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ SRC R E I + N+ E L + P
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
L + S+ ++RR + + ++ K
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
WV+KYRP L ++ H ++ ++EG PHLLF+GP G GK T I+A+ +++YG
Sbjct: 19 WVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKN 78
Query: 62 -------------------------------------PVIILNETDHLTREAQQALRRTM 84
++IL+E D +T AQ ALRR +
Sbjct: 79 YRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQNALRRII 138
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + AN ++ PA+ SRC R + I L ++ ++E + + PE
Sbjct: 139 EKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAF 198
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L S ++RRA+ + +A
Sbjct: 199 QSLLHLSSGDMRRALNVLQA 218
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 47/209 (22%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
++W++KYRP L + L + +K G+ PHLLF G +G GK T + L +E +G
Sbjct: 6 TIWIEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFG 65
Query: 62 P---------------------------------------VIILNETDHLTREAQQALRR 82
++ L+E D LT +AQ ALRR
Sbjct: 66 DSWQMNFRELNASDERGIDVVRNQIKEFARTRPAGDAAFKILFLDEADALTTDAQAALRR 125
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI----PAPTHEEIVSVLTNICKKEGLT 138
TME Y TCR IL N S++I I+SRC R P EEI T I +E L
Sbjct: 126 TMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEI----TRIAAREHLD 181
Query: 139 IPPEFALRLAQQSDRNLRRAILMCEASKV 167
+ PE + + ++R+AI + + +
Sbjct: 182 VTPEAMDAMVYIAQGDMRKAINALQGAAI 210
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL+ + H + L + PH+LFYGP G GK + I+A +++YGP
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN 84
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 85 YRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVI 144
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
EKY R + N ++++ PAI+SRC R +EI + ++ + E I P+
Sbjct: 145 EKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAK 204
Query: 145 LRLAQQSDRNLRRAILMCEA 164
+ + + S ++R+A+ + +A
Sbjct: 205 MAVLRLSKGDMRKALNILQA 224
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 39/172 (22%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW +KYRP L + + + L+ +KE + PHLLF GP G GK T +AL+ +LYG
Sbjct: 9 LWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD 68
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
V++L+E D++T +AQQALRRT
Sbjct: 69 NYTEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRT 128
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE 135
ME Y R IL N +S++I I+SR R E++V+ L I K E
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNE 180
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 139/319 (43%), Gaps = 58/319 (18%)
Query: 4 WVDKYRPNNLQKLDFHCKQAN---HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
WV+KYRP QKLD Q + L+ ++E P+L+F GP+G GK T +AL +E+
Sbjct: 8 WVEKYRP---QKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREIL 64
Query: 61 GP--------------------------------------VIILNETDHLTREAQQALRR 82
G +I L+E D++T++AQ ALRR
Sbjct: 65 GEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFRIIFLDEVDNMTKDAQHALRR 124
Query: 83 TMEKYITTCRLILCANSMSQVIPAIRSRCLCIR-IPAPTHEEIVSVLTNICKKEGLTIPP 141
ME Y T IL N S++I I+SRC R +P H +I+ L I +KE L
Sbjct: 125 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGH-QIIKRLEYIAEKENLEYEA 183
Query: 142 EFALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199
+ ++ +LR+AI L AS ++ +V +R K I+
Sbjct: 184 HALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILD--- 240
Query: 200 PKKLLEVRTRLYELLV-HSIP----VNVLFKYLLE-GLLANCDSDLKSKSIEMAAMFEHR 253
K +E R L E++V I V +++ L + D D I+ ++ R
Sbjct: 241 -GKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFR 299
Query: 254 IHKGSKPIFHIEAYVASFM 272
I +G+ P +EA +A F+
Sbjct: 300 IREGANPRIQLEALLARFL 318
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 53/261 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ L +L H + L ++ PHLLFYGP G GK T ++A +++Y P
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPT 90
Query: 63 ------------------------------------------------VIILNETDHLTR 74
++IL+E D +T+
Sbjct: 91 KMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTK 150
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
+AQ ALRR +EKY R + N ++ ++PAI+SRC R + IV L I +
Sbjct: 151 DAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVET 210
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ---IDQQIVEPDWKIYIRDTA 191
E L + P+ L S ++R I +++ + + Q I +P K +++
Sbjct: 211 EQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPK-EMKEVV 269
Query: 192 KLIISEQSPKKLLEVRTRLYE 212
K ++++ S K + ++T+L+E
Sbjct: 270 KTLLNDPSKKCMNTIQTKLFE 290
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 40/196 (20%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + + + L+ + KEG+ PHL+ G G GK T I+ L L GP
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
+IIL+E D +T AQQALRRT
Sbjct: 83 YKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRT 142
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y T R L N +++I I+SRC +R T ++++ L NICK E + +
Sbjct: 143 MEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDG 202
Query: 144 ALRLAQQSDRNLRRAI 159
L ++ ++R+A+
Sbjct: 203 LAALIMTAEGDMRQAV 218
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 45/201 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
W +KYRP L + + + L+ L+ D PHLLFYGP G GK + +A ++L+
Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKN 76
Query: 63 --------------------------------------------VIILNETDHLTREAQQ 78
+IIL+E D +TREAQ
Sbjct: 77 IFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQA 136
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
A+RR +E + T R IL N +S++IP + SRC R + E V L IC EG
Sbjct: 137 AMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTP 196
Query: 139 IPPEFALRLAQQSDRNLRRAI 159
+ + ++ + S+ +LRRA+
Sbjct: 197 MSDDELKQVMEYSEGDLRRAV 217
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 47/209 (22%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 63 ----------------------------------------------VIILNETDHLTREA 76
++IL+E D +T A
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAA 159
Query: 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
Q ALRRTMEK T R L N +S++I + SRC R + + L +I KKE
Sbjct: 160 QAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKEN 219
Query: 137 LTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+ I E L + S+ +LR+AI +++
Sbjct: 220 VKISDEGIAYLVKVSEGDLRKAITFLQSA 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,961,124
Number of Sequences: 539616
Number of extensions: 3772981
Number of successful extensions: 19857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 19511
Number of HSP's gapped (non-prelim): 358
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)