Query psy2281
Match_columns 287
No_of_seqs 352 out of 3194
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 20:41:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2035|consensus 100.0 4.8E-51 1E-55 329.9 30.8 281 2-282 1-350 (351)
2 KOG0991|consensus 100.0 2.4E-45 5.2E-50 290.2 23.8 267 3-274 16-326 (333)
3 KOG0989|consensus 100.0 4.4E-45 9.5E-50 299.8 26.1 268 3-274 25-344 (346)
4 PLN03025 replication factor C 100.0 3.7E-43 8.1E-48 305.6 30.5 268 3-274 2-312 (319)
5 PRK00440 rfc replication facto 100.0 2E-36 4.2E-41 264.3 31.6 269 2-274 5-316 (319)
6 COG2256 MGS1 ATPase related to 100.0 1.1E-37 2.5E-42 265.1 19.8 246 2-285 12-302 (436)
7 PRK12402 replication factor C 100.0 6.7E-36 1.4E-40 262.9 31.0 267 1-271 2-336 (337)
8 PRK08451 DNA polymerase III su 100.0 7.5E-36 1.6E-40 270.2 29.6 269 1-275 1-336 (535)
9 PRK14956 DNA polymerase III su 100.0 5.5E-35 1.2E-39 259.8 28.4 268 3-273 7-368 (484)
10 PRK07003 DNA polymerase III su 100.0 1.2E-34 2.5E-39 266.6 29.1 267 3-274 5-358 (830)
11 PRK14952 DNA polymerase III su 100.0 2.1E-34 4.7E-39 264.3 30.1 267 3-273 2-362 (584)
12 PRK14958 DNA polymerase III su 100.0 3.1E-34 6.8E-39 261.2 28.2 267 3-273 5-355 (509)
13 PRK14949 DNA polymerase III su 100.0 8.8E-34 1.9E-38 265.3 29.8 266 3-273 5-356 (944)
14 PRK14964 DNA polymerase III su 100.0 1.2E-33 2.6E-38 253.9 29.0 267 2-273 1-353 (491)
15 PRK14961 DNA polymerase III su 100.0 2.4E-33 5.1E-38 247.7 29.8 267 3-273 5-359 (363)
16 PRK14963 DNA polymerase III su 100.0 1.8E-33 3.8E-38 255.7 29.6 268 1-273 1-340 (504)
17 PRK07764 DNA polymerase III su 100.0 1.2E-33 2.6E-38 268.3 29.4 271 1-275 1-366 (824)
18 PRK12323 DNA polymerase III su 100.0 2.1E-33 4.5E-38 255.4 27.7 267 3-274 5-363 (700)
19 PRK06305 DNA polymerase III su 100.0 4.3E-33 9.4E-38 251.0 29.5 271 3-277 6-352 (451)
20 PRK14965 DNA polymerase III su 100.0 3.4E-33 7.3E-38 258.8 29.3 266 4-273 6-360 (576)
21 PRK06645 DNA polymerase III su 100.0 5.5E-33 1.2E-37 251.5 30.0 268 2-273 9-370 (507)
22 PRK14960 DNA polymerase III su 100.0 4.8E-33 1E-37 253.6 29.1 268 3-274 4-358 (702)
23 PRK14962 DNA polymerase III su 100.0 4.4E-33 9.6E-38 251.3 28.6 269 1-273 1-332 (472)
24 PRK08691 DNA polymerase III su 100.0 8.6E-33 1.9E-37 254.0 28.7 269 2-274 4-358 (709)
25 PRK14951 DNA polymerase III su 100.0 1.2E-32 2.7E-37 253.6 29.6 267 3-273 5-363 (618)
26 PRK07994 DNA polymerase III su 100.0 1.4E-32 2.9E-37 253.7 29.6 267 3-274 5-359 (647)
27 PRK05563 DNA polymerase III su 100.0 2.2E-32 4.8E-37 252.3 30.5 267 3-273 5-359 (559)
28 PHA02544 44 clamp loader, smal 100.0 4.5E-32 9.8E-37 236.4 29.9 265 1-275 8-313 (316)
29 PRK14957 DNA polymerase III su 100.0 3.9E-32 8.5E-37 247.3 30.4 269 2-274 4-358 (546)
30 PRK14971 DNA polymerase III su 100.0 2.5E-32 5.4E-37 253.6 29.6 268 3-274 6-362 (614)
31 COG2812 DnaX DNA polymerase II 100.0 1.4E-32 3E-37 246.2 25.0 269 3-275 5-361 (515)
32 PRK07133 DNA polymerase III su 100.0 3.7E-32 7.9E-37 252.2 28.3 269 3-275 7-356 (725)
33 PRK14955 DNA polymerase III su 100.0 6E-32 1.3E-36 241.3 28.7 271 1-275 3-374 (397)
34 PRK09111 DNA polymerase III su 100.0 7.8E-32 1.7E-36 248.7 29.9 267 3-273 13-373 (598)
35 PRK14959 DNA polymerase III su 100.0 8.9E-32 1.9E-36 246.3 28.8 268 2-273 4-361 (624)
36 KOG0990|consensus 100.0 2.1E-32 4.4E-37 226.3 22.0 270 2-276 29-352 (360)
37 PRK14954 DNA polymerase III su 100.0 2E-31 4.3E-36 246.4 29.6 267 4-274 6-373 (620)
38 PRK14970 DNA polymerase III su 100.0 4.7E-31 1E-35 234.3 29.7 269 2-274 5-349 (367)
39 PRK06647 DNA polymerase III su 100.0 3E-31 6.5E-36 243.9 29.0 267 3-273 5-357 (563)
40 PRK14969 DNA polymerase III su 100.0 3.2E-31 7E-36 243.0 28.4 268 3-274 5-358 (527)
41 PRK14953 DNA polymerase III su 100.0 7.8E-31 1.7E-35 237.8 29.4 267 2-273 4-353 (486)
42 TIGR02397 dnaX_nterm DNA polym 100.0 1.1E-30 2.3E-35 231.4 28.4 266 2-271 2-354 (355)
43 PRK14948 DNA polymerase III su 100.0 1.2E-30 2.5E-35 242.5 29.7 268 3-274 5-362 (620)
44 PRK14950 DNA polymerase III su 100.0 1.3E-30 2.8E-35 242.7 29.7 267 3-273 5-360 (585)
45 PRK04195 replication factor C 100.0 4.9E-31 1.1E-35 241.2 25.7 264 1-274 1-313 (482)
46 PRK05896 DNA polymerase III su 100.0 2.3E-31 4.9E-36 242.5 23.0 227 3-233 5-291 (605)
47 KOG2028|consensus 100.0 2.4E-32 5.3E-37 229.3 14.5 251 3-285 127-432 (554)
48 PRK04132 replication factor C 100.0 4.1E-29 8.8E-34 236.1 26.7 233 38-274 567-844 (846)
49 PRK13342 recombination factor 100.0 3.7E-29 8.1E-34 224.7 22.4 244 3-285 1-283 (413)
50 PRK13341 recombination factor 100.0 2.4E-29 5.3E-34 236.5 19.7 250 2-285 16-311 (725)
51 COG1126 GlnQ ABC-type polar am 100.0 3.6E-30 7.7E-35 202.8 -1.5 204 11-225 6-225 (240)
52 COG1125 OpuBA ABC-type proline 99.9 2.8E-28 6.1E-33 196.2 0.6 213 12-234 6-234 (309)
53 PF05496 RuvB_N: Holliday junc 99.9 1.2E-25 2.6E-30 180.2 14.7 164 3-166 13-226 (233)
54 PRK05564 DNA polymerase III su 99.9 4.1E-23 8.8E-28 179.5 27.3 256 12-272 2-311 (313)
55 COG1127 Ttg2A ABC-type transpo 99.9 8.6E-27 1.9E-31 186.5 2.3 203 13-225 14-235 (263)
56 PRK07940 DNA polymerase III su 99.9 9.8E-23 2.1E-27 180.3 26.0 146 12-162 3-214 (394)
57 COG1117 PstB ABC-type phosphat 99.9 2.9E-25 6.2E-30 174.6 4.1 195 8-214 8-222 (253)
58 COG3842 PotA ABC-type spermidi 99.9 7E-26 1.5E-30 194.8 -0.4 209 12-233 10-234 (352)
59 COG1135 AbcC ABC-type metal io 99.9 6.4E-25 1.4E-29 181.8 4.5 182 21-213 20-215 (339)
60 COG3638 ABC-type phosphate/pho 99.9 8.1E-25 1.8E-29 174.7 1.9 217 12-233 8-245 (258)
61 PRK07399 DNA polymerase III su 99.9 1.9E-21 4.1E-26 167.7 22.7 236 12-273 2-312 (314)
62 PRK08058 DNA polymerase III su 99.9 4.1E-21 8.9E-26 167.5 25.0 253 12-272 3-327 (329)
63 PRK09112 DNA polymerase III su 99.9 3.6E-22 7.8E-27 174.5 18.3 154 8-163 17-242 (351)
64 PRK07471 DNA polymerase III su 99.9 1.5E-20 3.4E-25 165.0 25.7 152 8-163 13-240 (365)
65 COG1118 CysA ABC-type sulfate/ 99.9 5.7E-25 1.2E-29 181.8 -2.2 205 12-225 7-227 (345)
66 PRK07993 DNA polymerase III su 99.9 1.4E-20 3E-25 163.6 24.8 248 20-277 8-325 (334)
67 COG1116 TauB ABC-type nitrate/ 99.9 2.9E-25 6.2E-30 179.9 -4.5 182 15-213 11-204 (248)
68 PRK00080 ruvB Holliday junctio 99.9 1.4E-21 3.1E-26 170.9 18.2 165 3-167 14-228 (328)
69 PRK05707 DNA polymerase III su 99.9 1.3E-20 2.7E-25 163.5 23.2 242 25-274 11-324 (328)
70 COG3839 MalK ABC-type sugar tr 99.9 2.5E-25 5.5E-30 190.3 -6.4 203 13-231 9-229 (338)
71 COG1120 FepC ABC-type cobalami 99.9 9.6E-25 2.1E-29 180.0 -3.8 208 17-233 12-237 (258)
72 COG2884 FtsE Predicted ATPase 99.9 1.4E-23 3E-28 162.1 1.5 182 20-212 15-209 (223)
73 COG0470 HolB ATPase involved i 99.9 2.4E-20 5.1E-25 163.2 20.5 247 15-276 2-319 (325)
74 COG1136 SalX ABC-type antimicr 99.9 8E-23 1.7E-27 165.5 3.7 183 22-216 20-218 (226)
75 COG1124 DppF ABC-type dipeptid 99.9 9E-24 2E-28 169.8 -1.9 182 22-215 22-217 (252)
76 COG2255 RuvB Holliday junction 99.9 1.4E-20 3E-25 154.1 16.5 163 6-168 18-230 (332)
77 PRK06871 DNA polymerase III su 99.9 5.1E-19 1.1E-23 152.4 26.4 245 20-273 8-321 (325)
78 COG4175 ProV ABC-type proline/ 99.9 1.6E-22 3.5E-27 167.7 2.6 172 31-213 52-238 (386)
79 TIGR00678 holB DNA polymerase 99.8 6.1E-20 1.3E-24 148.1 14.3 129 24-158 2-188 (188)
80 PRK08769 DNA polymerase III su 99.8 7.4E-19 1.6E-23 151.2 21.3 138 19-162 9-209 (319)
81 TIGR00635 ruvB Holliday juncti 99.8 1.6E-19 3.4E-24 156.7 17.2 156 11-166 1-206 (305)
82 KOG1969|consensus 99.8 2.2E-19 4.7E-24 163.2 18.1 169 3-171 260-520 (877)
83 TIGR00602 rad24 checkpoint pro 99.8 7E-20 1.5E-24 169.7 15.4 168 2-169 72-331 (637)
84 TIGR02902 spore_lonB ATP-depen 99.8 1.8E-19 3.8E-24 166.2 17.8 165 2-167 53-310 (531)
85 COG4152 ABC-type uncharacteriz 99.8 1.1E-21 2.3E-26 157.4 1.0 186 12-213 7-203 (300)
86 PRK05917 DNA polymerase III su 99.8 1.4E-17 3.1E-22 140.5 25.7 221 21-277 4-279 (290)
87 COG1122 CbiO ABC-type cobalt t 99.8 7.1E-22 1.5E-26 162.8 -1.5 184 21-215 18-214 (235)
88 PRK06090 DNA polymerase III su 99.8 3E-17 6.5E-22 141.1 26.8 137 19-163 8-203 (319)
89 COG0411 LivG ABC-type branched 99.8 7.3E-23 1.6E-27 164.7 -7.3 198 13-214 10-224 (250)
90 COG1137 YhbG ABC-type (unclass 99.8 1.9E-23 4.2E-28 162.6 -10.3 194 11-213 8-212 (243)
91 COG1131 CcmA ABC-type multidru 99.8 5.4E-22 1.2E-26 170.0 -2.8 187 12-211 9-208 (293)
92 COG4555 NatA ABC-type Na+ tran 99.8 4.3E-21 9.4E-26 149.7 2.2 179 22-213 17-206 (245)
93 PRK06964 DNA polymerase III su 99.8 3.4E-17 7.3E-22 142.1 26.6 199 63-274 135-340 (342)
94 PF13177 DNA_pol3_delta2: DNA 99.8 2.4E-19 5.2E-24 140.7 12.0 103 18-120 1-162 (162)
95 PF03215 Rad17: Rad17 cell cyc 99.8 1.9E-18 4.1E-23 157.5 17.3 166 2-167 7-269 (519)
96 TIGR02314 ABC_MetN D-methionin 99.8 9.1E-21 2E-25 165.5 1.7 181 22-213 20-214 (343)
97 PRK08084 DNA replication initi 99.8 6.8E-18 1.5E-22 140.6 17.6 155 12-166 20-214 (235)
98 TIGR00960 3a0501s02 Type II (G 99.8 1.1E-20 2.5E-25 155.8 -0.3 180 22-212 18-210 (216)
99 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.9E-21 4.2E-26 159.7 -4.9 180 21-211 18-210 (254)
100 COG4598 HisP ABC-type histidin 99.8 1.8E-20 3.8E-25 143.8 0.5 204 12-225 11-241 (256)
101 TIGR01186 proV glycine betaine 99.8 2.2E-21 4.7E-26 170.3 -5.9 193 22-225 8-219 (363)
102 COG0444 DppD ABC-type dipeptid 99.8 3.6E-21 7.7E-26 161.5 -4.8 188 21-216 19-230 (316)
103 COG4161 ArtP ABC-type arginine 99.8 7E-20 1.5E-24 138.1 2.5 196 8-213 3-214 (242)
104 PRK11650 ugpC glycerol-3-phosp 99.8 1.3E-20 2.7E-25 165.8 -1.9 190 22-225 19-224 (356)
105 COG4525 TauB ABC-type taurine 99.8 2.6E-20 5.6E-25 144.7 -0.1 175 21-212 19-205 (259)
106 PRK11432 fbpC ferric transport 99.8 2.3E-21 5E-26 170.0 -6.8 190 22-225 21-226 (351)
107 PRK07132 DNA polymerase III su 99.8 4.3E-16 9.3E-21 133.1 25.4 234 21-275 3-298 (299)
108 PRK07276 DNA polymerase III su 99.8 2.6E-16 5.7E-21 133.3 23.8 135 18-162 6-198 (290)
109 COG1123 ATPase components of v 99.8 2.3E-20 5E-25 167.6 -1.3 194 21-225 305-519 (539)
110 PRK13537 nodulation ABC transp 99.8 5.9E-21 1.3E-25 165.0 -5.0 183 18-213 18-211 (306)
111 TIGR01188 drrA daunorubicin re 99.8 1.1E-20 2.4E-25 163.4 -3.5 179 22-213 8-197 (302)
112 KOG1970|consensus 99.8 1.1E-17 2.5E-22 147.9 15.1 167 2-168 70-322 (634)
113 PRK06893 DNA replication initi 99.8 3.5E-17 7.5E-22 135.9 17.2 158 9-166 11-208 (229)
114 PRK06620 hypothetical protein; 99.8 4.1E-17 9E-22 133.6 17.3 151 12-166 14-194 (214)
115 TIGR03265 PhnT2 putative 2-ami 99.8 2.7E-20 5.8E-25 163.5 -1.7 189 23-225 20-224 (353)
116 TIGR02673 FtsE cell division A 99.8 3.1E-20 6.8E-25 152.9 -2.1 181 21-212 16-209 (214)
117 TIGR02881 spore_V_K stage V sp 99.8 2.7E-17 5.8E-22 139.4 15.6 155 12-166 4-235 (261)
118 cd03292 ABC_FtsE_transporter F 99.8 6.5E-20 1.4E-24 151.1 -0.4 181 22-213 16-209 (214)
119 cd03265 ABC_DrrA DrrA is the A 99.8 2.5E-20 5.4E-25 154.2 -3.1 179 22-213 15-205 (220)
120 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.3E-20 2.9E-25 155.6 -4.9 179 22-212 19-212 (218)
121 PRK09452 potA putrescine/sperm 99.8 5.1E-20 1.1E-24 162.7 -1.6 191 22-226 29-235 (375)
122 PRK11153 metN DL-methionine tr 99.8 1.1E-19 2.4E-24 159.4 0.4 181 22-213 20-214 (343)
123 COG4619 ABC-type uncharacteriz 99.8 6.4E-19 1.4E-23 133.8 4.3 178 22-214 18-208 (223)
124 COG4181 Predicted ABC-type tra 99.7 1.3E-19 2.9E-24 137.9 0.1 180 22-213 25-219 (228)
125 PRK08727 hypothetical protein; 99.7 1.1E-16 2.5E-21 133.1 17.6 156 11-166 16-209 (233)
126 cd03218 ABC_YhbG The ABC trans 99.7 2.8E-20 6E-25 155.2 -4.2 181 22-213 15-206 (232)
127 cd03261 ABC_Org_Solvent_Resist 99.7 1.3E-19 2.8E-24 151.4 -0.1 182 22-213 15-210 (235)
128 cd03266 ABC_NatA_sodium_export 99.7 4.7E-20 1E-24 152.3 -2.8 179 22-213 20-209 (218)
129 cd03263 ABC_subfamily_A The AB 99.7 5.1E-20 1.1E-24 152.3 -2.7 179 22-213 17-205 (220)
130 PRK13536 nodulation factor exp 99.7 1.4E-20 3.1E-25 164.4 -6.5 180 21-213 55-245 (340)
131 PRK10851 sulfate/thiosulfate t 99.7 3.8E-20 8.2E-25 162.6 -4.1 194 22-225 17-226 (353)
132 cd03225 ABC_cobalt_CbiO_domain 99.7 2.6E-20 5.5E-25 153.1 -4.9 179 22-212 16-206 (211)
133 COG3840 ThiQ ABC-type thiamine 99.7 1.4E-19 3.1E-24 139.0 -0.5 175 30-218 22-208 (231)
134 PRK12422 chromosomal replicati 99.7 2.7E-16 5.9E-21 141.8 20.5 240 12-257 109-417 (445)
135 TIGR01288 nodI ATP-binding ABC 99.7 3.5E-20 7.5E-25 160.3 -4.8 180 21-213 18-208 (303)
136 PRK08903 DnaA regulatory inact 99.7 1.6E-16 3.5E-21 132.0 17.3 159 8-166 12-204 (227)
137 cd03258 ABC_MetN_methionine_tr 99.7 8.1E-20 1.8E-24 152.4 -2.5 181 22-213 20-214 (233)
138 PRK11607 potG putrescine trans 99.7 1E-19 2.2E-24 160.9 -2.1 190 22-225 34-239 (377)
139 cd03264 ABC_drug_resistance_li 99.7 3.2E-19 6.9E-24 146.6 0.8 177 22-212 15-201 (211)
140 PRK10908 cell division protein 99.7 2.9E-19 6.3E-24 148.0 0.6 181 22-213 17-210 (222)
141 COG0593 DnaA ATPase involved i 99.7 2.8E-16 6E-21 137.8 19.0 237 12-252 85-379 (408)
142 cd03259 ABC_Carb_Solutes_like 99.7 5.4E-20 1.2E-24 151.4 -4.0 178 22-213 15-204 (213)
143 TIGR03415 ABC_choXWV_ATP choli 99.7 2.6E-19 5.7E-24 157.9 0.1 172 31-213 48-238 (382)
144 cd03262 ABC_HisP_GlnQ_permease 99.7 3E-20 6.5E-25 153.0 -5.8 181 22-212 15-207 (213)
145 PRK14087 dnaA chromosomal repl 99.7 2.6E-16 5.6E-21 142.4 19.1 243 10-256 111-421 (450)
146 cd03269 ABC_putative_ATPase Th 99.7 3.9E-19 8.4E-24 146.0 0.7 175 23-213 16-201 (210)
147 PRK11000 maltose/maltodextrin 99.7 2E-20 4.4E-25 165.5 -7.6 178 22-213 18-207 (369)
148 TIGR02315 ABC_phnC phosphonate 99.7 1.4E-19 3E-24 152.0 -2.2 189 21-213 16-219 (243)
149 PRK15079 oligopeptide ABC tran 99.7 3.2E-19 7E-24 155.5 -0.4 186 22-215 36-237 (331)
150 PRK10070 glycine betaine trans 99.7 3.7E-19 7.9E-24 158.1 -0.2 172 31-213 52-238 (400)
151 TIGR03258 PhnT 2-aminoethylpho 99.7 3.1E-20 6.8E-25 163.4 -7.2 190 22-225 20-228 (362)
152 cd03301 ABC_MalK_N The N-termi 99.7 5.1E-20 1.1E-24 151.6 -5.5 178 22-213 15-204 (213)
153 TIGR03608 L_ocin_972_ABC putat 99.7 5.9E-20 1.3E-24 150.4 -5.2 176 22-209 13-202 (206)
154 cd03294 ABC_Pro_Gly_Bertaine T 99.7 7.8E-20 1.7E-24 155.6 -4.9 181 22-213 39-234 (269)
155 PRK00149 dnaA chromosomal repl 99.7 5E-16 1.1E-20 141.4 19.7 229 12-248 120-413 (450)
156 cd03219 ABC_Mj1267_LivG_branch 99.7 7.7E-20 1.7E-24 152.9 -4.9 188 22-213 15-216 (236)
157 cd03293 ABC_NrtD_SsuB_transpor 99.7 3.3E-19 7.1E-24 147.5 -1.3 175 22-213 19-205 (220)
158 TIGR01166 cbiO cobalt transpor 99.7 2.3E-19 5.1E-24 145.0 -2.2 169 22-201 7-188 (190)
159 PRK14088 dnaA chromosomal repl 99.7 5.2E-16 1.1E-20 140.2 19.1 237 12-256 103-406 (440)
160 PRK11629 lolD lipoprotein tran 99.7 1.4E-18 3.1E-23 144.9 2.4 178 22-211 24-216 (233)
161 PRK11264 putative amino-acid A 99.7 3.3E-19 7.1E-24 150.4 -1.8 184 21-214 17-218 (250)
162 TIGR02903 spore_lon_C ATP-depe 99.7 4.2E-16 9.1E-21 146.0 18.6 161 5-166 145-399 (615)
163 TIGR03522 GldA_ABC_ATP gliding 99.7 5E-19 1.1E-23 152.9 -1.1 179 22-213 17-205 (301)
164 COG4604 CeuD ABC-type enteroch 99.7 9.7E-19 2.1E-23 136.2 0.6 213 11-233 5-234 (252)
165 PRK13651 cobalt transporter AT 99.7 9.3E-19 2E-23 151.1 0.5 182 22-213 22-238 (305)
166 cd03256 ABC_PhnC_transporter A 99.7 1.4E-19 3E-24 151.8 -4.7 188 22-213 16-218 (241)
167 PRK14700 recombination factor 99.7 1.3E-16 2.9E-21 133.4 13.1 163 91-285 7-179 (300)
168 cd03296 ABC_CysA_sulfate_impor 99.7 8E-20 1.7E-24 153.0 -6.3 183 21-213 16-210 (239)
169 PRK10895 lipopolysaccharide AB 99.7 2.2E-19 4.7E-24 150.6 -3.9 184 22-215 18-212 (241)
170 PRK09493 glnQ glutamine ABC tr 99.7 2.2E-19 4.8E-24 150.4 -3.8 182 22-213 16-209 (240)
171 PRK13650 cbiO cobalt transport 99.7 6.9E-19 1.5E-23 150.5 -1.0 179 22-213 22-213 (279)
172 PRK09087 hypothetical protein; 99.7 3.8E-16 8.2E-21 129.0 15.3 152 12-165 19-199 (226)
173 cd03260 ABC_PstB_phosphate_tra 99.7 2E-19 4.3E-24 149.5 -4.5 181 22-213 15-213 (227)
174 TIGR02211 LolD_lipo_ex lipopro 99.7 1.1E-18 2.3E-23 144.6 -0.1 178 22-211 20-212 (221)
175 PRK11124 artP arginine transpo 99.7 4E-19 8.6E-24 149.1 -2.8 183 21-213 16-214 (242)
176 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.6E-18 3.4E-23 145.5 0.6 183 22-214 16-210 (242)
177 PRK13647 cbiO cobalt transport 99.7 7.6E-19 1.6E-23 149.8 -1.4 180 22-213 20-211 (274)
178 PRK11308 dppF dipeptide transp 99.7 1.1E-18 2.4E-23 152.0 -0.6 185 22-215 30-230 (327)
179 cd03235 ABC_Metallic_Cations A 99.7 2.3E-19 5E-24 147.6 -4.7 179 22-213 14-205 (213)
180 cd03224 ABC_TM1139_LivF_branch 99.7 2E-19 4.4E-24 148.9 -5.1 180 22-214 15-206 (222)
181 cd03268 ABC_BcrA_bacitracin_re 99.7 2.9E-18 6.4E-23 140.6 1.8 174 22-213 15-199 (208)
182 PRK13638 cbiO cobalt transport 99.7 2.8E-19 6E-24 152.4 -4.5 182 21-213 15-209 (271)
183 PRK10619 histidine/lysine/argi 99.7 2.5E-19 5.3E-24 151.7 -4.9 182 22-213 20-225 (257)
184 PRK14086 dnaA chromosomal repl 99.7 2.3E-15 4.9E-20 138.3 20.5 226 12-248 286-580 (617)
185 PRK13637 cbiO cobalt transport 99.7 1.2E-18 2.7E-23 149.5 -0.8 184 22-214 22-219 (287)
186 COG1223 Predicted ATPase (AAA+ 99.7 2E-16 4.4E-21 128.2 12.0 146 8-154 115-318 (368)
187 PRK11831 putative ABC transpor 99.7 3.1E-18 6.8E-23 145.8 1.6 182 22-213 22-217 (269)
188 COG4172 ABC-type uncharacteriz 99.7 1.1E-18 2.4E-23 149.4 -1.2 186 21-214 301-501 (534)
189 PRK11248 tauB taurine transpor 99.7 3.4E-19 7.3E-24 150.4 -4.6 175 22-213 16-202 (255)
190 PRK08699 DNA polymerase III su 99.7 7.6E-15 1.7E-19 127.3 21.9 225 32-275 17-321 (325)
191 COG1123 ATPase components of v 99.7 7.7E-19 1.7E-23 157.8 -3.5 197 21-225 23-244 (539)
192 cd03226 ABC_cobalt_CbiO_domain 99.7 3.8E-19 8.2E-24 145.5 -5.1 172 22-212 15-198 (205)
193 TIGR00972 3a0107s01c2 phosphat 99.7 6.5E-19 1.4E-23 148.2 -3.9 183 22-214 16-217 (247)
194 PRK13635 cbiO cobalt transport 99.7 1.6E-18 3.5E-23 148.1 -1.6 179 22-213 22-213 (279)
195 PRK09700 D-allose transporter 99.7 2.5E-19 5.3E-24 165.9 -7.2 189 21-213 19-218 (510)
196 cd03267 ABC_NatA_like Similar 99.7 5.6E-19 1.2E-23 147.5 -4.3 179 22-213 36-227 (236)
197 PRK13646 cbiO cobalt transport 99.7 3.1E-18 6.7E-23 147.0 0.0 182 22-213 22-219 (286)
198 PRK13631 cbiO cobalt transport 99.7 1.9E-18 4.2E-23 150.0 -1.2 183 22-214 41-250 (320)
199 PRK10584 putative ABC transpor 99.7 3.6E-18 7.7E-23 142.1 0.3 179 22-212 25-218 (228)
200 PRK13641 cbiO cobalt transport 99.7 2E-18 4.3E-23 148.2 -1.2 181 22-213 22-218 (287)
201 TIGR01184 ntrCD nitrate transp 99.7 3.2E-18 7E-23 142.4 -0.0 170 29-213 7-188 (230)
202 COG4608 AppF ABC-type oligopep 99.7 1.8E-18 3.9E-23 142.3 -1.6 148 21-216 27-186 (268)
203 PRK11022 dppD dipeptide transp 99.7 1.6E-18 3.4E-23 151.1 -2.2 186 22-215 22-229 (326)
204 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.8E-15 4E-20 125.6 16.3 158 9-166 10-206 (226)
205 PRK13643 cbiO cobalt transport 99.7 3.6E-18 7.8E-23 146.7 0.0 194 22-225 21-233 (288)
206 TIGR02324 CP_lyasePhnL phospho 99.7 5.4E-18 1.2E-22 140.6 0.9 180 22-212 23-221 (224)
207 PRK13634 cbiO cobalt transport 99.7 3.4E-18 7.3E-23 147.0 -0.4 183 22-214 22-220 (290)
208 COG3845 ABC-type uncharacteriz 99.7 2.5E-18 5.3E-23 150.9 -1.2 192 14-213 11-213 (501)
209 PRK13548 hmuV hemin importer A 99.7 3.5E-19 7.5E-24 150.7 -6.4 180 22-213 17-214 (258)
210 PRK13652 cbiO cobalt transport 99.7 3.8E-18 8.3E-23 145.8 -0.1 181 22-214 19-212 (277)
211 COG4148 ModC ABC-type molybdat 99.7 6.3E-18 1.4E-22 138.3 1.2 166 38-218 27-207 (352)
212 TIGR03005 ectoine_ehuA ectoine 99.7 1.1E-18 2.4E-23 147.2 -3.5 182 22-213 15-220 (252)
213 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 3.2E-18 7E-23 143.1 -0.8 179 22-214 16-206 (236)
214 PRK15112 antimicrobial peptide 99.7 1.7E-18 3.6E-23 147.3 -2.6 182 22-213 28-223 (267)
215 PRK10762 D-ribose transporter 99.7 3.6E-19 7.8E-24 164.4 -7.3 186 21-213 18-214 (501)
216 PRK09536 btuD corrinoid ABC tr 99.7 2.1E-19 4.5E-24 159.8 -8.7 185 21-213 17-212 (402)
217 PRK05642 DNA replication initi 99.7 3.3E-15 7.2E-20 124.3 17.0 156 11-166 16-213 (234)
218 TIGR02142 modC_ABC molybdenum 99.7 1.9E-18 4.1E-23 152.4 -2.6 175 26-213 16-205 (354)
219 PRK09473 oppD oligopeptide tra 99.7 1.5E-18 3.3E-23 151.3 -3.2 186 22-215 31-237 (330)
220 CHL00181 cbbX CbbX; Provisiona 99.7 2.9E-15 6.4E-20 127.9 17.0 150 15-165 24-250 (287)
221 TIGR03411 urea_trans_UrtD urea 99.7 6.2E-19 1.3E-23 148.0 -5.6 189 22-214 17-216 (242)
222 PRK11614 livF leucine/isoleuci 99.7 5.2E-19 1.1E-23 148.0 -6.1 180 21-213 19-210 (237)
223 PRK13633 cobalt transporter AT 99.7 1.2E-18 2.6E-23 149.1 -4.0 180 22-213 25-217 (280)
224 PRK13636 cbiO cobalt transport 99.7 6.1E-18 1.3E-22 144.9 0.3 181 22-213 21-215 (283)
225 PRK13632 cbiO cobalt transport 99.7 8.8E-19 1.9E-23 149.3 -4.9 179 22-213 24-215 (271)
226 TIGR02769 nickel_nikE nickel i 99.7 3.1E-18 6.6E-23 145.6 -1.7 184 22-214 26-225 (265)
227 TIGR00362 DnaA chromosomal rep 99.7 3.8E-15 8.3E-20 134.1 18.0 231 12-248 108-401 (405)
228 cd03298 ABC_ThiQ_thiamine_tran 99.7 3E-18 6.5E-23 140.8 -2.0 175 25-213 16-202 (211)
229 TIGR01277 thiQ thiamine ABC tr 99.7 3.8E-18 8.3E-23 140.4 -1.9 175 25-213 16-202 (213)
230 TIGR03269 met_CoM_red_A2 methy 99.7 2.9E-18 6.3E-23 159.2 -2.9 182 22-214 15-243 (520)
231 PRK13639 cbiO cobalt transport 99.7 6.8E-18 1.5E-22 144.1 -0.5 181 22-213 17-210 (275)
232 PRK14247 phosphate ABC transpo 99.7 9E-19 1.9E-23 147.7 -5.9 186 21-214 17-219 (250)
233 PRK13549 xylose transporter AT 99.7 6.9E-19 1.5E-23 162.7 -7.1 185 21-213 19-216 (506)
234 cd03257 ABC_NikE_OppD_transpor 99.7 2.7E-18 5.7E-23 142.9 -3.0 183 22-213 20-219 (228)
235 PRK11247 ssuB aliphatic sulfon 99.7 9.1E-19 2E-23 147.7 -5.9 170 21-213 26-207 (257)
236 PF00308 Bac_DnaA: Bacterial d 99.7 5.8E-15 1.3E-19 121.5 16.7 157 12-168 6-215 (219)
237 COG4136 ABC-type uncharacteriz 99.7 1.7E-17 3.6E-22 123.8 1.4 165 25-204 20-199 (213)
238 PRK14267 phosphate ABC transpo 99.7 2E-18 4.4E-23 145.8 -4.1 186 21-213 18-221 (253)
239 PRK11144 modC molybdate transp 99.7 3.4E-18 7.3E-23 150.6 -2.9 172 26-214 17-203 (352)
240 PRK13644 cbiO cobalt transport 99.7 5.4E-18 1.2E-22 144.6 -1.6 180 22-213 17-208 (274)
241 COG1101 PhnK ABC-type uncharac 99.7 8.8E-18 1.9E-22 132.6 -0.3 188 21-213 20-222 (263)
242 PRK05818 DNA polymerase III su 99.7 1E-14 2.2E-19 120.7 17.5 121 35-164 6-193 (261)
243 TIGR01978 sufC FeS assembly AT 99.7 1.5E-18 3.2E-23 145.8 -5.5 188 22-213 15-218 (243)
244 TIGR03410 urea_trans_UrtE urea 99.7 1.9E-18 4.2E-23 143.9 -4.9 179 22-213 15-205 (230)
245 PRK13649 cbiO cobalt transport 99.7 8.1E-18 1.7E-22 144.2 -1.2 181 22-213 22-218 (280)
246 cd03297 ABC_ModC_molybdenum_tr 99.7 1.2E-17 2.5E-22 137.6 -0.3 175 25-213 16-205 (214)
247 PRK11300 livG leucine/isoleuci 99.7 1.5E-18 3.3E-23 146.8 -5.8 188 22-213 20-227 (255)
248 COG0410 LivF ABC-type branched 99.7 5.8E-18 1.2E-22 135.5 -2.2 193 12-215 8-212 (237)
249 PRK11231 fecE iron-dicitrate t 99.6 9.1E-19 2E-23 148.0 -7.4 184 22-213 17-211 (255)
250 TIGR01187 potA spermidine/putr 99.6 6.2E-18 1.3E-22 147.4 -2.4 162 40-213 1-174 (325)
251 cd03300 ABC_PotA_N PotA is an 99.6 2.6E-18 5.6E-23 143.2 -4.6 178 22-213 15-204 (232)
252 PRK13648 cbiO cobalt transport 99.6 7E-18 1.5E-22 143.7 -2.1 179 22-213 24-215 (269)
253 TIGR02770 nickel_nikD nickel i 99.6 6E-18 1.3E-22 140.8 -2.4 174 28-213 7-199 (230)
254 PRK11701 phnK phosphonate C-P 99.6 4.9E-18 1.1E-22 143.8 -3.0 184 21-213 20-225 (258)
255 PRK14268 phosphate ABC transpo 99.6 2.4E-18 5.3E-23 145.6 -4.9 183 22-214 27-227 (258)
256 PRK10982 galactose/methyl gala 99.6 2E-18 4.3E-23 159.2 -6.0 182 22-213 13-207 (491)
257 PRK14241 phosphate transporter 99.6 1.7E-18 3.6E-23 146.7 -6.0 185 21-213 18-220 (258)
258 PRK14273 phosphate ABC transpo 99.6 3.9E-18 8.4E-23 144.1 -4.1 184 21-213 21-222 (254)
259 PRK09984 phosphonate/organopho 99.6 3.7E-18 8E-23 144.9 -4.2 188 21-213 18-226 (262)
260 PRK10575 iron-hydroxamate tran 99.6 1.2E-18 2.6E-23 148.1 -7.2 186 21-214 25-222 (265)
261 PRK10261 glutathione transport 99.6 1.6E-17 3.6E-22 156.8 -0.4 184 22-215 339-539 (623)
262 PRK13645 cbiO cobalt transport 99.6 1.4E-17 3E-22 143.2 -0.8 183 22-214 26-225 (289)
263 PRK13640 cbiO cobalt transport 99.6 1.2E-17 2.5E-22 143.2 -1.4 179 22-213 22-216 (282)
264 PRK10253 iron-enterobactin tra 99.6 1.6E-18 3.5E-23 147.2 -6.7 186 21-214 21-218 (265)
265 TIGR02982 heterocyst_DevA ABC 99.6 3.1E-17 6.6E-22 135.7 1.0 178 22-211 20-212 (220)
266 COG1129 MglA ABC-type sugar tr 99.6 9.6E-18 2.1E-22 149.8 -2.2 196 11-213 12-218 (500)
267 TIGR03873 F420-0_ABC_ATP propo 99.6 1.4E-18 3.1E-23 146.9 -7.3 186 22-215 16-212 (256)
268 PRK10744 pstB phosphate transp 99.6 3.1E-18 6.7E-23 145.1 -5.4 184 21-213 27-228 (260)
269 cd03231 ABC_CcmA_heme_exporter 99.6 1.9E-18 4.2E-23 140.8 -6.5 173 22-213 15-198 (201)
270 COG4559 ABC-type hemin transpo 99.6 4.6E-17 9.9E-22 128.3 1.5 192 12-214 6-215 (259)
271 PRK15439 autoinducer 2 ABC tra 99.6 1.5E-18 3.2E-23 160.5 -8.3 178 21-213 25-213 (510)
272 PRK15093 antimicrobial peptide 99.6 2.8E-17 6.1E-22 143.6 0.0 188 22-215 22-234 (330)
273 PRK11288 araG L-arabinose tran 99.6 2.3E-18 5E-23 159.0 -7.2 184 22-213 19-213 (501)
274 TIGR00968 3a0106s01 sulfate AB 99.6 2.1E-17 4.5E-22 138.2 -0.9 179 22-214 15-205 (237)
275 PRK14250 phosphate ABC transpo 99.6 3.4E-18 7.4E-23 143.3 -5.7 176 22-214 18-206 (241)
276 PRK14270 phosphate ABC transpo 99.6 6E-18 1.3E-22 142.7 -4.3 184 22-215 19-221 (251)
277 PRK14256 phosphate ABC transpo 99.6 2.9E-18 6.2E-23 144.8 -6.4 184 22-213 19-220 (252)
278 PRK13642 cbiO cobalt transport 99.6 3.7E-17 8.1E-22 139.7 0.3 179 22-213 22-213 (277)
279 PRK10771 thiQ thiamine transpo 99.6 1.5E-17 3.3E-22 138.6 -2.1 175 25-213 17-203 (232)
280 PRK13538 cytochrome c biogenes 99.6 1.8E-18 3.9E-23 141.4 -7.6 171 22-208 16-197 (204)
281 PRK10419 nikE nickel transport 99.6 1.3E-17 2.9E-22 141.8 -2.6 185 21-214 26-226 (268)
282 PRK14242 phosphate transporter 99.6 5.4E-18 1.2E-22 143.2 -5.0 184 21-213 20-221 (253)
283 PRK10261 glutathione transport 99.6 1.7E-17 3.7E-22 156.6 -2.5 186 22-215 31-244 (623)
284 TIGR02323 CP_lyasePhnK phospho 99.6 2.1E-17 4.7E-22 139.5 -1.7 184 22-214 18-223 (253)
285 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 5E-18 1.1E-22 140.7 -5.5 169 21-213 36-215 (224)
286 PRK14253 phosphate ABC transpo 99.6 9.2E-18 2E-22 141.4 -3.9 185 21-214 17-218 (249)
287 PRK13543 cytochrome c biogenes 99.6 7.5E-18 1.6E-22 138.7 -4.6 173 21-211 25-208 (214)
288 PRK15134 microcin C ABC transp 99.6 1.8E-17 3.9E-22 154.1 -2.7 185 22-215 301-501 (529)
289 cd03299 ABC_ModC_like Archeal 99.6 2.9E-17 6.3E-22 137.2 -1.2 177 23-213 15-203 (235)
290 PRK14258 phosphate ABC transpo 99.6 7.8E-18 1.7E-22 142.8 -5.0 185 21-215 21-226 (261)
291 PRK09700 D-allose transporter 99.6 8.7E-18 1.9E-22 155.6 -5.3 189 22-213 278-482 (510)
292 COG1119 ModF ABC-type molybden 99.6 5.6E-17 1.2E-21 130.9 -0.1 186 19-211 43-244 (257)
293 TIGR02633 xylG D-xylose ABC tr 99.6 4.8E-18 1E-22 157.0 -7.3 185 22-213 16-214 (500)
294 PRK10247 putative ABC transpor 99.6 1.1E-17 2.3E-22 138.9 -4.6 178 21-213 21-210 (225)
295 PRK14251 phosphate ABC transpo 99.6 1.5E-17 3.2E-22 140.4 -3.9 186 21-215 18-221 (251)
296 PRK13549 xylose transporter AT 99.6 1.6E-17 3.5E-22 153.6 -4.0 187 22-213 277-478 (506)
297 PRK10938 putative molybdenum t 99.6 3.6E-17 7.9E-22 150.8 -1.7 181 21-213 17-208 (490)
298 PRK14235 phosphate transporter 99.6 4.1E-17 8.9E-22 138.8 -1.3 184 22-213 34-235 (267)
299 PRK13547 hmuV hemin importer A 99.6 9.4E-18 2E-22 142.7 -5.3 185 21-213 15-228 (272)
300 PRK14254 phosphate ABC transpo 99.6 2.9E-18 6.4E-23 146.9 -8.5 179 22-211 54-250 (285)
301 PRK03695 vitamin B12-transport 99.6 2.4E-17 5.1E-22 138.7 -2.9 178 23-213 12-206 (248)
302 COG1222 RPT1 ATP-dependent 26S 99.6 4.1E-14 8.9E-19 119.9 16.5 144 7-151 144-353 (406)
303 TIGR03269 met_CoM_red_A2 methy 99.6 8.5E-17 1.8E-21 149.4 0.5 182 22-213 299-501 (520)
304 PRK14240 phosphate transporter 99.6 9.1E-18 2E-22 141.6 -5.6 183 22-213 18-218 (250)
305 PRK14238 phosphate transporter 99.6 1.1E-17 2.3E-22 142.6 -5.2 182 22-213 39-239 (271)
306 cd03234 ABCG_White The White s 99.6 1.8E-17 3.8E-22 137.7 -3.8 179 22-213 22-217 (226)
307 TIGR01257 rim_protein retinal- 99.6 7.2E-17 1.6E-21 165.3 -0.3 176 24-212 1956-2142(2272)
308 PRK14260 phosphate ABC transpo 99.6 1.2E-17 2.6E-22 141.5 -5.0 184 22-214 22-223 (259)
309 TIGR03740 galliderm_ABC gallid 99.6 8E-17 1.7E-21 133.5 -0.0 173 22-214 15-198 (223)
310 PRK14271 phosphate ABC transpo 99.6 1.4E-17 3E-22 142.2 -4.7 184 22-214 36-236 (276)
311 TIGR02880 cbbX_cfxQ probable R 99.6 3.7E-14 8E-19 121.3 16.2 153 15-167 23-251 (284)
312 PRK14274 phosphate ABC transpo 99.6 9.1E-18 2E-22 142.3 -6.0 183 22-213 27-227 (259)
313 PRK14246 phosphate ABC transpo 99.6 1.2E-17 2.6E-22 141.2 -5.5 187 18-213 21-225 (257)
314 TIGR03771 anch_rpt_ABC anchore 99.6 4.1E-17 9E-22 135.1 -2.2 171 30-213 3-186 (223)
315 PRK13546 teichoic acids export 99.6 4.6E-17 9.9E-22 137.8 -2.1 165 24-213 41-216 (264)
316 PRK13539 cytochrome c biogenes 99.6 1.7E-17 3.7E-22 135.9 -4.6 165 22-205 17-192 (207)
317 PRK14259 phosphate ABC transpo 99.6 8.1E-18 1.8E-22 143.2 -6.7 182 22-214 28-227 (269)
318 PRK14262 phosphate ABC transpo 99.6 2E-17 4.2E-22 139.5 -4.5 183 22-213 18-218 (250)
319 KOG0059|consensus 99.6 1.3E-16 2.8E-21 155.5 0.3 193 10-213 567-771 (885)
320 PRK14269 phosphate ABC transpo 99.6 1.3E-17 2.8E-22 140.2 -5.7 185 22-215 17-216 (246)
321 PRK14239 phosphate transporter 99.6 1.8E-17 3.9E-22 139.9 -5.0 184 21-214 19-221 (252)
322 PRK14261 phosphate ABC transpo 99.6 1.2E-17 2.7E-22 141.0 -6.0 184 21-213 20-221 (253)
323 PRK14248 phosphate ABC transpo 99.6 1.7E-17 3.6E-22 141.3 -5.3 183 21-213 35-236 (268)
324 TIGR02633 xylG D-xylose ABC tr 99.6 2.7E-17 5.9E-22 152.0 -4.6 187 22-213 275-476 (500)
325 PRK14237 phosphate transporter 99.6 8.7E-17 1.9E-21 136.8 -1.2 183 22-213 35-235 (267)
326 TIGR01257 rim_protein retinal- 99.6 1E-16 2.2E-21 164.2 -1.2 176 23-211 946-1131(2272)
327 PRK10762 D-ribose transporter 99.6 6.7E-17 1.5E-21 149.3 -2.3 187 23-213 268-468 (501)
328 PRK14255 phosphate ABC transpo 99.6 1.9E-17 4.2E-22 139.8 -5.6 182 22-213 20-220 (252)
329 PRK15134 microcin C ABC transp 99.6 7.2E-17 1.6E-21 150.1 -2.4 185 22-214 24-231 (529)
330 PRK09580 sufC cysteine desulfu 99.6 3.3E-17 7.2E-22 138.0 -4.2 187 22-213 16-219 (248)
331 PRK14275 phosphate ABC transpo 99.6 1.1E-16 2.4E-21 137.4 -1.1 183 22-214 54-255 (286)
332 COG4172 ABC-type uncharacteriz 99.6 5.5E-17 1.2E-21 139.1 -2.9 186 20-213 23-231 (534)
333 TIGR01189 ccmA heme ABC export 99.6 2.3E-17 4.9E-22 134.2 -5.1 165 22-203 15-190 (198)
334 PRK14245 phosphate ABC transpo 99.6 1.6E-16 3.4E-21 134.0 -0.2 182 22-213 18-218 (250)
335 cd03237 ABC_RNaseL_inhibitor_d 99.6 8.9E-17 1.9E-21 134.7 -1.8 155 31-213 23-189 (246)
336 PRK14249 phosphate ABC transpo 99.6 1.7E-17 3.7E-22 139.9 -6.3 183 22-214 19-220 (251)
337 cd03215 ABC_Carb_Monos_II This 99.6 8.8E-18 1.9E-22 134.8 -7.8 152 22-213 15-177 (182)
338 PRK11288 araG L-arabinose tran 99.6 2.2E-17 4.8E-22 152.6 -6.4 188 22-213 268-469 (501)
339 PRK14272 phosphate ABC transpo 99.6 2E-17 4.4E-22 139.6 -6.3 186 21-214 18-221 (252)
340 PRK13540 cytochrome c biogenes 99.6 2.3E-16 4.9E-21 128.5 -0.1 166 22-205 16-192 (200)
341 COG4778 PhnL ABC-type phosphon 99.6 4.3E-16 9.3E-21 118.7 1.3 181 22-213 26-225 (235)
342 PTZ00112 origin recognition co 99.6 3.8E-13 8.1E-18 126.3 20.9 159 7-168 751-988 (1164)
343 PRK14243 phosphate transporter 99.6 2.9E-17 6.2E-22 139.5 -5.9 182 21-213 24-223 (264)
344 PRK14236 phosphate transporter 99.6 2.2E-17 4.8E-22 140.8 -6.7 183 22-214 40-241 (272)
345 cd03214 ABC_Iron-Siderophores_ 99.6 2E-16 4.3E-21 126.7 -0.9 146 22-213 14-171 (180)
346 PRK14265 phosphate ABC transpo 99.6 2.9E-17 6.2E-22 140.2 -6.3 182 22-214 35-234 (274)
347 COG4586 ABC-type uncharacteriz 99.6 2.1E-15 4.6E-20 123.3 4.6 177 22-213 39-230 (325)
348 COG4674 Uncharacterized ABC-ty 99.6 5.7E-17 1.2E-21 126.2 -4.3 191 17-212 15-218 (249)
349 CHL00131 ycf16 sulfate ABC tra 99.6 2.8E-17 6.2E-22 138.7 -6.6 188 22-213 22-225 (252)
350 PRK15439 autoinducer 2 ABC tra 99.6 1.3E-16 2.8E-21 147.7 -2.9 182 23-213 279-476 (510)
351 PRK14263 phosphate ABC transpo 99.6 2.4E-16 5.2E-21 133.5 -1.0 181 22-213 23-221 (261)
352 cd03251 ABCC_MsbA MsbA is an e 99.6 6.9E-17 1.5E-21 134.9 -4.3 180 22-215 17-211 (234)
353 cd03248 ABCC_TAP TAP, the Tran 99.6 2.1E-17 4.5E-22 137.3 -7.5 177 22-212 29-220 (226)
354 PRK14257 phosphate ABC transpo 99.6 2.1E-16 4.7E-21 137.7 -1.5 183 22-214 97-298 (329)
355 PRK14266 phosphate ABC transpo 99.6 3.7E-16 8E-21 131.8 -0.0 183 22-213 18-218 (250)
356 TIGR02639 ClpA ATP-dependent C 99.6 6.9E-14 1.5E-18 134.3 15.4 162 3-166 171-402 (731)
357 PRK14244 phosphate ABC transpo 99.6 4.4E-16 9.6E-21 131.3 0.2 184 22-213 20-221 (251)
358 PRK15056 manganese/iron transp 99.6 1.9E-16 4.2E-21 135.0 -2.1 179 22-211 22-213 (272)
359 cd03289 ABCC_CFTR2 The CFTR su 99.6 6.8E-17 1.5E-21 137.4 -4.9 183 22-225 19-225 (275)
360 PLN03211 ABC transporter G-25; 99.6 6.6E-17 1.4E-21 152.8 -5.7 180 21-213 82-280 (659)
361 COG4988 CydD ABC-type transpor 99.6 5E-16 1.1E-20 139.5 0.3 179 21-213 335-527 (559)
362 PF06068 TIP49: TIP49 C-termin 99.6 1.8E-13 3.9E-18 117.4 15.5 102 63-165 281-395 (398)
363 PRK10982 galactose/methyl gala 99.5 1.1E-16 2.4E-21 147.6 -4.7 187 22-213 263-464 (491)
364 COG2274 SunT ABC-type bacterio 99.5 2.6E-16 5.6E-21 148.3 -2.3 179 21-213 487-680 (709)
365 PRK13541 cytochrome c biogenes 99.5 6.3E-16 1.4E-20 125.4 0.1 159 26-205 19-188 (195)
366 TIGR03345 VI_ClpV1 type VI sec 99.5 8.9E-14 1.9E-18 134.6 14.9 161 4-166 177-407 (852)
367 PRK14264 phosphate ABC transpo 99.5 4.4E-17 9.5E-22 141.0 -7.3 188 21-211 59-270 (305)
368 cd03230 ABC_DR_subfamily_A Thi 99.5 7.4E-17 1.6E-21 128.3 -5.6 142 22-212 15-167 (173)
369 PRK10938 putative molybdenum t 99.5 8.4E-17 1.8E-21 148.4 -6.1 185 22-213 275-476 (490)
370 TIGR02868 CydC thiol reductant 99.5 3.1E-16 6.7E-21 146.0 -3.1 160 22-199 350-528 (529)
371 PRK14252 phosphate ABC transpo 99.5 6.7E-16 1.4E-20 131.3 -0.9 184 21-214 30-234 (265)
372 PRK13545 tagH teichoic acids e 99.5 4.7E-16 1E-20 140.5 -2.1 181 22-227 39-234 (549)
373 PRK10418 nikD nickel transport 99.5 5.2E-16 1.1E-20 131.1 -1.8 178 22-213 18-214 (254)
374 cd03252 ABCC_Hemolysin The ABC 99.5 4.8E-16 1E-20 130.0 -1.9 178 22-213 17-209 (237)
375 cd03246 ABCC_Protease_Secretio 99.5 1.6E-16 3.5E-21 126.4 -4.6 139 22-211 17-166 (173)
376 KOG0058|consensus 99.5 1.7E-15 3.7E-20 138.8 1.2 173 21-206 482-669 (716)
377 PTZ00361 26 proteosome regulat 99.5 1.4E-13 3E-18 123.4 13.1 159 3-162 172-400 (438)
378 cd03245 ABCC_bacteriocin_expor 99.5 4.1E-16 8.8E-21 129.0 -3.1 172 22-213 19-211 (220)
379 TIGR00955 3a01204 The Eye Pigm 99.5 6.8E-16 1.5E-20 145.7 -2.0 179 22-212 40-239 (617)
380 cd03229 ABC_Class3 This class 99.5 3.4E-16 7.3E-21 125.1 -3.6 145 22-211 15-172 (178)
381 PRK11176 lipid transporter ATP 99.5 7.3E-16 1.6E-20 145.2 -2.1 179 22-213 358-551 (582)
382 cd03254 ABCC_Glucan_exporter_l 99.5 1.3E-16 2.9E-21 132.7 -6.7 178 22-213 18-210 (229)
383 PRK11174 cysteine/glutathione 99.5 9.8E-16 2.1E-20 144.5 -1.8 175 22-213 365-556 (588)
384 PRK09544 znuC high-affinity zi 99.5 2.1E-15 4.5E-20 127.0 -0.2 163 22-213 19-194 (251)
385 KOG0057|consensus 99.5 2E-15 4.3E-20 134.1 -0.4 174 22-213 367-558 (591)
386 COG1224 TIP49 DNA helicase TIP 99.5 1.6E-12 3.6E-17 110.1 17.0 105 63-168 294-411 (450)
387 cd03216 ABC_Carb_Monos_I This 99.5 7.9E-16 1.7E-20 121.1 -2.7 130 22-213 15-155 (163)
388 KOG0733|consensus 99.5 4.5E-13 9.7E-18 120.4 14.1 145 12-157 188-398 (802)
389 cd03253 ABCC_ATM1_transporter 99.5 6E-16 1.3E-20 129.4 -4.0 178 22-213 16-208 (236)
390 PRK00411 cdc6 cell division co 99.5 2.3E-11 5E-16 109.3 25.4 154 14-167 30-260 (394)
391 TIGR02928 orc1/cdc6 family rep 99.5 1.1E-11 2.3E-16 110.4 22.7 160 5-167 9-252 (365)
392 cd03236 ABC_RNaseL_inhibitor_d 99.5 2.5E-15 5.5E-20 126.5 -0.5 172 22-213 16-212 (255)
393 cd03244 ABCC_MRP_domain2 Domai 99.5 4.2E-16 9.1E-21 129.0 -5.3 172 22-212 19-209 (221)
394 PLN03232 ABC transporter C fam 99.5 8.4E-16 1.8E-20 157.2 -4.3 178 21-213 1250-1442(1495)
395 KOG0730|consensus 99.5 3.9E-13 8.5E-18 121.9 13.3 155 10-166 430-652 (693)
396 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 7E-16 1.5E-20 129.1 -4.4 178 22-213 18-210 (238)
397 cd03213 ABCG_EPDR ABCG transpo 99.5 4.4E-16 9.5E-21 126.2 -5.6 149 21-213 23-185 (194)
398 cd03228 ABCC_MRP_Like The MRP 99.5 9.1E-16 2E-20 121.8 -3.6 139 22-211 17-165 (171)
399 COG0396 sufC Cysteine desulfur 99.5 3.6E-15 7.7E-20 119.3 -0.7 179 20-206 17-210 (251)
400 PTZ00454 26S protease regulato 99.5 2E-12 4.4E-17 115.1 16.7 153 10-163 141-363 (398)
401 TIGR00763 lon ATP-dependent pr 99.5 5.5E-13 1.2E-17 128.8 14.0 136 15-150 321-533 (775)
402 PRK10790 putative multidrug tr 99.5 1.5E-15 3.3E-20 143.3 -3.6 173 22-213 356-547 (592)
403 TIGR02857 CydD thiol reductant 99.5 2.4E-15 5.2E-20 140.1 -2.2 170 22-209 337-525 (529)
404 cd03233 ABC_PDR_domain1 The pl 99.5 1.1E-15 2.5E-20 124.5 -3.8 156 22-213 22-193 (202)
405 cd03232 ABC_PDR_domain2 The pl 99.5 1.1E-15 2.4E-20 123.6 -3.9 147 22-213 22-182 (192)
406 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 9.2E-16 2E-20 147.0 -5.2 171 22-213 468-657 (686)
407 cd03247 ABCC_cytochrome_bd The 99.5 4E-15 8.6E-20 119.0 -0.8 141 22-211 17-167 (178)
408 TIGR01241 FtsH_fam ATP-depende 99.5 9E-13 2E-17 121.5 14.6 154 8-162 49-271 (495)
409 PLN03130 ABC transporter C fam 99.5 1.5E-15 3.3E-20 155.7 -4.4 177 22-213 1254-1445(1622)
410 COG1132 MdlB ABC-type multidru 99.5 1.5E-15 3.2E-20 142.6 -4.2 179 21-213 343-536 (567)
411 PRK10535 macrolide transporter 99.5 2.8E-15 6.2E-20 142.1 -2.8 180 22-213 23-216 (648)
412 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 6.2E-16 1.3E-20 148.8 -7.4 178 22-213 494-684 (710)
413 COG4138 BtuD ABC-type cobalami 99.5 4.1E-14 8.8E-19 108.5 3.8 170 27-213 19-205 (248)
414 TIGR02204 MsbA_rel ABC transpo 99.5 3E-15 6.5E-20 140.9 -3.0 176 22-213 355-547 (576)
415 KOG0055|consensus 99.5 1.8E-14 3.8E-19 139.4 2.1 176 22-211 368-558 (1228)
416 TIGR03015 pepcterm_ATPase puta 99.5 5.5E-12 1.2E-16 107.5 17.3 145 20-165 29-242 (269)
417 PRK13409 putative ATPase RIL; 99.5 4.4E-15 9.5E-20 138.8 -2.4 158 26-213 358-527 (590)
418 PRK03992 proteasome-activating 99.5 2.9E-12 6.3E-17 114.4 15.8 152 11-163 128-349 (389)
419 PRK13657 cyclic beta-1,2-gluca 99.4 3.7E-15 8.1E-20 140.4 -3.1 178 22-213 350-542 (588)
420 PRK15177 Vi polysaccharide exp 99.4 6.1E-15 1.3E-19 121.2 -1.5 162 26-215 6-178 (213)
421 KOG0738|consensus 99.4 5E-12 1.1E-16 108.2 16.0 145 12-157 210-423 (491)
422 TIGR01846 type_I_sec_HlyB type 99.4 1.5E-15 3.3E-20 145.6 -6.0 178 22-213 472-664 (694)
423 TIGR03375 type_I_sec_LssB type 99.4 2E-15 4.3E-20 144.8 -5.2 178 22-213 480-672 (694)
424 TIGR02203 MsbA_lipidA lipid A 99.4 4.8E-15 1E-19 139.4 -2.7 175 22-213 347-540 (571)
425 cd03369 ABCC_NFT1 Domain 2 of 99.4 4.4E-15 9.6E-20 121.6 -2.6 163 22-212 23-195 (207)
426 PRK05907 hypothetical protein; 99.4 2E-10 4.4E-15 99.1 25.9 242 23-273 7-310 (311)
427 PRK07452 DNA polymerase III su 99.4 9.5E-11 2E-15 102.7 24.3 211 63-275 64-325 (326)
428 PRK06581 DNA polymerase III su 99.4 4.1E-12 8.9E-17 103.1 14.4 102 63-167 92-193 (263)
429 TIGR03689 pup_AAA proteasome A 99.4 2.2E-12 4.8E-17 117.3 14.2 130 5-134 173-380 (512)
430 COG4987 CydC ABC-type transpor 99.4 2.3E-14 5.1E-19 127.2 0.9 174 21-212 352-544 (573)
431 PRK10789 putative multidrug tr 99.4 5.4E-15 1.2E-19 138.7 -3.3 174 22-213 330-522 (569)
432 CHL00195 ycf46 Ycf46; Provisio 99.4 3.5E-12 7.6E-17 116.1 15.0 154 11-164 225-442 (489)
433 TIGR01842 type_I_sec_PrtD type 99.4 7.2E-15 1.6E-19 137.2 -2.7 178 21-213 332-526 (544)
434 TIGR01193 bacteriocin_ABC ABC- 99.4 3.4E-15 7.3E-20 143.6 -5.1 179 22-213 489-681 (708)
435 PRK11160 cysteine/glutathione 99.4 5.1E-15 1.1E-19 139.0 -3.8 174 22-213 355-546 (574)
436 PRK15064 ABC transporter ATP-b 99.4 9.7E-16 2.1E-20 142.6 -8.7 178 21-214 15-226 (530)
437 CHL00176 ftsH cell division pr 99.4 1.1E-11 2.3E-16 116.3 18.2 151 11-162 180-399 (638)
438 cd03217 ABC_FeS_Assembly ABC-t 99.4 8.8E-16 1.9E-20 125.0 -8.1 150 22-213 15-178 (200)
439 TIGR01242 26Sp45 26S proteasom 99.4 5.5E-12 1.2E-16 112.0 15.1 150 10-160 118-337 (364)
440 TIGR01192 chvA glucan exporter 99.4 7.5E-15 1.6E-19 138.0 -3.6 176 22-213 350-542 (585)
441 TIGR00958 3a01208 Conjugate Tr 99.4 6.8E-15 1.5E-19 141.2 -4.5 173 22-213 496-686 (711)
442 PLN03140 ABC transporter G fam 99.4 4E-15 8.6E-20 150.8 -6.4 180 22-213 895-1093(1470)
443 TIGR00956 3a01205 Pleiotropic 99.4 1.3E-14 2.8E-19 147.3 -3.0 178 23-213 779-976 (1394)
444 PRK11819 putative ABC transpor 99.4 1.3E-15 2.8E-20 142.4 -9.7 178 20-214 20-234 (556)
445 TIGR03346 chaperone_ClpB ATP-d 99.4 5.3E-12 1.1E-16 123.1 14.9 163 3-167 162-394 (852)
446 cd03288 ABCC_SUR2 The SUR doma 99.4 1.3E-14 2.8E-19 122.8 -3.0 175 22-213 36-227 (257)
447 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.9E-15 4.2E-20 141.1 -9.0 167 22-213 337-513 (552)
448 KOG0055|consensus 99.4 3.8E-14 8.3E-19 137.1 -0.5 177 21-211 1004-1195(1228)
449 PRK15064 ABC transporter ATP-b 99.4 1.5E-15 3.4E-20 141.2 -9.8 166 22-214 334-509 (530)
450 cd03222 ABC_RNaseL_inhibitor T 99.4 2E-14 4.3E-19 114.1 -2.1 113 29-213 21-145 (177)
451 cd03290 ABCC_SUR1_N The SUR do 99.4 3.1E-14 6.8E-19 117.5 -1.1 172 22-211 16-212 (218)
452 cd03250 ABCC_MRP_domain1 Domai 99.4 1.7E-15 3.7E-20 123.8 -8.7 162 22-211 20-198 (204)
453 PRK05629 hypothetical protein; 99.4 4.8E-10 1E-14 97.8 24.8 235 38-273 41-315 (318)
454 PRK11819 putative ABC transpor 99.4 2.8E-15 6.1E-20 140.1 -8.7 167 22-213 339-515 (556)
455 TIGR00956 3a01205 Pleiotropic 99.4 5.1E-14 1.1E-18 143.1 -0.4 179 29-213 83-284 (1394)
456 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 3.2E-15 7E-20 139.7 -8.4 176 21-213 19-231 (552)
457 COG4107 PhnK ABC-type phosphon 99.4 2.4E-13 5.2E-18 104.3 3.3 196 11-215 10-227 (258)
458 TIGR01243 CDC48 AAA family ATP 99.4 7.5E-12 1.6E-16 120.6 14.2 146 11-157 450-663 (733)
459 TIGR00957 MRP_assoc_pro multi 99.4 2.3E-14 5E-19 146.9 -3.4 175 22-213 1301-1492(1522)
460 cd03223 ABCD_peroxisomal_ALDP 99.4 2.4E-15 5.3E-20 118.7 -8.3 137 22-213 16-160 (166)
461 PRK10865 protein disaggregatio 99.4 6.1E-12 1.3E-16 122.3 13.2 150 4-155 168-381 (857)
462 TIGR03345 VI_ClpV1 type VI sec 99.4 2.5E-11 5.5E-16 117.8 17.4 152 14-165 566-826 (852)
463 PRK11147 ABC transporter ATPas 99.4 4.8E-15 1E-19 140.5 -8.3 168 22-213 334-510 (635)
464 KOG1968|consensus 99.4 3.6E-12 7.7E-17 121.9 11.0 166 1-168 307-538 (871)
465 COG4133 CcmA ABC-type transpor 99.4 3.1E-14 6.7E-19 110.4 -2.4 167 19-202 14-192 (209)
466 PLN00020 ribulose bisphosphate 99.4 1E-11 2.2E-16 107.0 12.6 114 38-154 151-331 (413)
467 PTZ00265 multidrug resistance 99.4 4.3E-14 9.3E-19 143.9 -3.0 175 22-214 1183-1432(1466)
468 PRK10787 DNA-binding ATP-depen 99.4 1E-11 2.2E-16 119.3 13.3 133 16-149 324-533 (784)
469 KOG1942|consensus 99.3 7.6E-11 1.6E-15 97.7 16.3 105 63-168 299-417 (456)
470 KOG0742|consensus 99.3 3.1E-11 6.7E-16 104.2 14.5 126 10-135 350-531 (630)
471 PRK10636 putative ABC transpor 99.3 1.9E-14 4.1E-19 136.3 -5.7 166 22-213 327-500 (638)
472 TIGR01194 cyc_pep_trnsptr cycl 99.3 4E-14 8.7E-19 132.4 -3.8 171 22-213 357-543 (555)
473 KOG0061|consensus 99.3 5.7E-13 1.2E-17 125.0 3.8 177 22-211 45-242 (613)
474 PTZ00243 ABC transporter; Prov 99.3 5.1E-14 1.1E-18 144.3 -3.6 173 22-213 1325-1517(1560)
475 PRK08485 DNA polymerase III su 99.3 3.9E-11 8.4E-16 94.8 13.2 135 29-165 20-171 (206)
476 PRK10636 putative ABC transpor 99.3 1.1E-15 2.5E-20 144.5 -14.8 190 17-214 11-220 (638)
477 COG4618 ArpD ABC-type protease 99.3 1.4E-13 3.1E-18 121.4 -0.7 178 21-213 350-544 (580)
478 PRK07914 hypothetical protein; 99.3 1.9E-09 4.1E-14 94.1 25.1 251 22-275 21-317 (320)
479 KOG0734|consensus 99.3 1.8E-11 3.9E-16 108.7 12.3 152 11-164 301-519 (752)
480 COG0466 Lon ATP-dependent Lon 99.3 2E-11 4.3E-16 112.1 12.9 135 15-151 324-537 (782)
481 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 1.9E-14 4.1E-19 110.9 -5.8 120 24-212 17-139 (144)
482 COG4167 SapF ABC-type antimicr 99.3 1.2E-13 2.5E-18 106.8 -1.5 182 22-213 28-223 (267)
483 PRK06585 holA DNA polymerase I 99.3 5.9E-09 1.3E-13 92.0 28.1 239 34-275 19-338 (343)
484 PTZ00265 multidrug resistance 99.3 5.3E-14 1.1E-18 143.2 -4.5 183 22-213 400-652 (1466)
485 KOG0056|consensus 99.3 9.5E-13 2.1E-17 115.8 3.7 170 21-205 552-738 (790)
486 TIGR01128 holA DNA polymerase 99.3 7.4E-10 1.6E-14 96.0 21.8 233 38-271 22-301 (302)
487 cd00267 ABC_ATPase ABC (ATP-bi 99.3 1.1E-13 2.4E-18 108.3 -2.0 125 24-211 16-151 (157)
488 CHL00095 clpC Clp protease ATP 99.3 6.3E-11 1.4E-15 115.3 16.5 160 6-167 171-399 (821)
489 PF00004 AAA: ATPase family as 99.3 1.3E-11 2.7E-16 93.4 8.7 79 38-116 1-130 (132)
490 KOG0733|consensus 99.3 7.6E-11 1.7E-15 106.3 14.8 147 11-157 508-724 (802)
491 CHL00095 clpC Clp protease ATP 99.3 6.1E-11 1.3E-15 115.4 15.3 137 14-150 509-759 (821)
492 TIGR02640 gas_vesic_GvpN gas v 99.3 1.5E-10 3.2E-15 98.2 15.8 122 21-149 9-210 (262)
493 PLN03140 ABC transporter G fam 99.3 4.7E-14 1E-18 143.1 -6.5 185 23-213 181-411 (1470)
494 COG0488 Uup ATPase components 99.3 6.7E-13 1.5E-17 121.5 1.6 186 12-213 8-223 (530)
495 PRK08487 DNA polymerase III su 99.3 7.1E-09 1.5E-13 90.8 26.7 244 25-274 5-325 (328)
496 TIGR02639 ClpA ATP-dependent C 99.3 5.8E-11 1.3E-15 114.2 14.7 136 15-150 455-689 (731)
497 TIGR01271 CFTR_protein cystic 99.3 1.5E-13 3.2E-18 140.8 -3.3 174 21-213 1233-1424(1490)
498 PRK05574 holA DNA polymerase I 99.3 4.1E-09 8.9E-14 92.9 25.4 211 63-273 79-338 (340)
499 PRK13409 putative ATPase RIL; 99.3 3.4E-13 7.5E-18 126.2 -0.9 175 22-213 89-284 (590)
500 COG1474 CDC6 Cdc6-related prot 99.3 1.1E-10 2.5E-15 102.8 14.6 162 6-170 12-246 (366)
No 1
>KOG2035|consensus
Probab=100.00 E-value=4.8e-51 Score=329.87 Aligned_cols=281 Identities=60% Similarity=0.998 Sum_probs=270.8
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
|+|++||||++++.+.++++....++.....+++||+++|||+|+||.|.+.|+.++++|.
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 4999999999999999999999999999989999999999999999999999999999875
Q ss_pred -------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281 63 -------------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 63 -------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~ 93 (287)
+|+|.|+|.++.++|.+||++||.++.++++
T Consensus 81 lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 9999999999999999999999999999999
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~ 173 (287)
|+.||..+.+.+|++|||..++.+.|+++++...+.++++++|+.++.+.+..+++.|+|++|+|+..++.+....+|+.
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc-cCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Q psy2281 174 ID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEH 252 (287)
Q Consensus 174 ~~-d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (287)
+. ......+|+..+.+++..++..+++..+.+++.++|+++..++||..|+.++...+..+.+...+..+++.+++|++
T Consensus 241 a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k~~~~~~Aa~yEh 320 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLKLEVIQHAAKYEH 320 (351)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 77 68888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q psy2281 253 RIHKGSKPIFHIEAYVASFMAMYLQFMEDT 282 (287)
Q Consensus 253 ~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~ 282 (287)
|+..|....+|||+|+|+||.+++.|..++
T Consensus 321 Rl~lG~KaIfHLEaFVA~fM~iy~~~~~~~ 350 (351)
T KOG2035|consen 321 RLRLGQKAIFHLEAFVAKFMCIYKKFLSST 350 (351)
T ss_pred HHhhcchhhhhHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999987654
No 2
>KOG0991|consensus
Probab=100.00 E-value=2.4e-45 Score=290.24 Aligned_cols=267 Identities=26% Similarity=0.424 Sum_probs=230.9
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------- 62 (287)
+|+|||||..+.+++|+++.++.++.+.++|..||++|.||||+||||.+.|+++.+.++
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVV 95 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHH
Confidence 599999999999999999999999999999999999999999999999999999998775
Q ss_pred --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281 63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122 (287)
Q Consensus 63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~ 122 (287)
+|++||+|.|+..+|.+||+.|+.++..++|.++||..+++.+|++|||.+++|..+++.
T Consensus 96 Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~ 175 (333)
T KOG0991|consen 96 RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQ 175 (333)
T ss_pred HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHH
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCc--cCccHHHHHHHHHHHHHhccCh
Q psy2281 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQI--VEPDWKIYIRDTAKLIISEQSP 200 (287)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~--~~~~~~~~i~~l~~~i~~~~~~ 200 (287)
++..++.++++.++++++++.++.+...+.||+|+|++.+|...-.-+..+..... .....-..++++...+..
T Consensus 176 qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~---- 251 (333)
T KOG0991|consen 176 QILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK---- 251 (333)
T ss_pred HHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh----
Confidence 99999999999999999999999999999999999999999877654433322210 001111233444333433
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 201 KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
..+....+.+.+++..|++|.+|+..++. ++|+ +++..+.+.++.++..+.|+..|.+..+||..++++++..
T Consensus 252 ~~~~~A~~il~~lw~lgysp~Dii~~~FR-v~K~~~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~l~~~ 326 (333)
T KOG0991|consen 252 RNIDEALKILAELWKLGYSPEDIITTLFR-VVKNMDVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAKLCKV 326 (333)
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHHh
Confidence 36666777777888899999999998875 4453 4677788999999999999999999999999999998764
No 3
>KOG0989|consensus
Probab=100.00 E-value=4.4e-45 Score=299.79 Aligned_cols=268 Identities=28% Similarity=0.393 Sum_probs=234.6
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------- 62 (287)
.|.+||||++|+++.|++.++..|++.+..+..||++||||||+|||+.+++++++++++
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv 104 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV 104 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence 699999999999999999999999999988889999999999999999999999999874
Q ss_pred ---------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceee
Q psy2281 63 ---------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR 115 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 115 (287)
++++||+|.|+.++|.+|++.|+..+++++|+++||..++++.++.|||+.|+
T Consensus 105 vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc-ccc--CccCccHHHHHHHHHH
Q psy2281 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQ--QIVEPDWKIYIRDTAK 192 (287)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~-~~d--~~~~~~~~~~i~~l~~ 192 (287)
|++++.+++..+++.|+.++|+.+++++++.+++.|+||+|+|+..++.+....++++ .+. ........+.+.++.+
T Consensus 185 Fk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle 264 (346)
T KOG0989|consen 185 FKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLE 264 (346)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999777655 322 1111222344555555
Q ss_pred HHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHH
Q psy2281 193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVAS 270 (287)
Q Consensus 193 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~ 270 (287)
..++. +..++-..+.+++..|++|-.+++++++.+... .++..+..+-..+.+.+.++..|.+.+++|-.+...
T Consensus 265 ~a~S~----d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~~ 340 (346)
T KOG0989|consen 265 LALSA----DTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLEA 340 (346)
T ss_pred HHHcc----ChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHHH
Confidence 55554 333444455668889999999999999998874 567888999999999999999999999999888876
Q ss_pred HHHH
Q psy2281 271 FMAM 274 (287)
Q Consensus 271 ~~~~ 274 (287)
....
T Consensus 341 ~~ql 344 (346)
T KOG0989|consen 341 EKQL 344 (346)
T ss_pred HHHH
Confidence 6543
No 4
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=305.56 Aligned_cols=268 Identities=26% Similarity=0.435 Sum_probs=234.3
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------- 62 (287)
||++||||++|++++|+.+++..|+.++..+..||++|+||||+||||+++++++.+.+.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v 81 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV 81 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH
Confidence 899999999999999999999999999999999999999999999999999999886321
Q ss_pred --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281 63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122 (287)
Q Consensus 63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~ 122 (287)
++++||+|.++..+|++|++.++.++.+++|+++++..+++.++++|||..++|++++.+
T Consensus 82 r~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~ 161 (319)
T PLN03025 82 RNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 161 (319)
T ss_pred HHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHH
Confidence 899999999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccCh
Q psy2281 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSP 200 (287)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~ 200 (287)
++..++..+++++|+.+++++++++++.++||+|++++.++......+.++..+ ........+.++++.+.+..
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~---- 237 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK---- 237 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc----
Confidence 999999999999999999999999999999999999999996654323222211 11233444566777666544
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 201 KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
.++......+++++..|+++..|+..++..+.+ .+++..+..++..++++++|+..|.++.+||++|+++++..
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~ 312 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLV 312 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 357777788888999999999999999776654 56888899999999999999999999999999999999886
No 5
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=2e-36 Score=264.29 Aligned_cols=269 Identities=31% Similarity=0.511 Sum_probs=232.4
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
-+|++||||++|++++|+..+++.+..+++.+..||++|+||+|+||||+++++++.+.+.
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 84 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDV 84 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHH
Confidence 4799999999999999999999999999999999999999999999999999998875211
Q ss_pred --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281 63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122 (287)
Q Consensus 63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~ 122 (287)
+|++||++.++...+..|++.++.++.++.++++++...++.+++++||.++.|.+++.+
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ 164 (319)
T PRK00440 85 IRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKE 164 (319)
T ss_pred HHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHH
Confidence 799999999998888999999999888899999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccCh
Q psy2281 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSP 200 (287)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~ 200 (287)
++..++...+.+.|+.+++++++.+++.++||+|++++.++.+....++++..+ ..........++++.+.+...
T Consensus 165 ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~~~--- 241 (319)
T PRK00440 165 AVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNG--- 241 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC---
Confidence 999999999999999999999999999999999999999999887765544433 122233345667777766543
Q ss_pred hHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 201 KKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 201 ~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
........+.+++ ..|+++.++...++.++.. +++...+.++++.+++++++++.|.++.++||.|+++++.+
T Consensus 242 -~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 242 -DFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred -CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 4555666667776 4799999999998876654 68899999999999999999999999999999999999875
No 6
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-37 Score=265.05 Aligned_cols=246 Identities=18% Similarity=0.257 Sum_probs=203.9
Q ss_pred CccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
+|.+++.||+++++++||++.+ ..|...++.|.+++++||||||+||||++++|++.....
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~ 91 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLRE 91 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHH
Confidence 3788999999999999999886 689999999999999999999999999999999987654
Q ss_pred ---------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC----CcHHHhcccceeecCCCCHHH
Q psy2281 63 ---------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ----VIPAIRSRCLCIRIPAPTHEE 123 (287)
Q Consensus 63 ---------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~----l~~~l~sr~~~~~~~~~~~~~ 123 (287)
++|+||++++++..|+.|+..+| +..+++++...+| +.++++|||+++.|++++.++
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d 167 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE----NGTIILIGATTENPSFELNPALLSRARVFELKPLSSED 167 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence 99999999999999999999998 4555555554444 899999999999999999999
Q ss_pred HHHHHHHHHHH--hCCC-----CCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHh
Q psy2281 124 IVSVLTNICKK--EGLT-----IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS 196 (287)
Q Consensus 124 ~~~~l~~~~~~--~~~~-----~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~ 196 (287)
+...+.+.+.. .|+. +++++.+.++..++||.|++++.++-+....++-. ....+.++++...
T Consensus 168 i~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~-------~~~~~~l~~~l~~--- 237 (436)
T COG2256 168 IKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE-------VLILELLEEILQR--- 237 (436)
T ss_pred HHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc-------ccCHHHHHHHHhh---
Confidence 99999995443 3444 67999999999999999999999999988877532 1112333333322
Q ss_pred ccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHH
Q psy2281 197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~ 276 (287)
....+.+-.|.+|++++. +.|++ +.+..+++.+|.+||..|++++. |++|.+.+++
T Consensus 238 --~~~~~Dk~gD~hYdliSA--------------~hKSv----RGSD~dAALyylARmi~~GeDp~----yiARRlv~~A 293 (436)
T COG2256 238 --RSARFDKDGDAHYDLISA--------------LHKSV----RGSDPDAALYYLARMIEAGEDPL----YIARRLVRIA 293 (436)
T ss_pred --hhhccCCCcchHHHHHHH--------------HHHhh----ccCCcCHHHHHHHHHHhcCCCHH----HHHHHHHHHH
Confidence 122344556777777664 77777 88889999999999999999988 8999999999
Q ss_pred HHHHhhhhc
Q psy2281 277 QFMEDTLSN 285 (287)
Q Consensus 277 ~~~~~~~~~ 285 (287)
++|||+||.
T Consensus 294 sEDIGlAdP 302 (436)
T COG2256 294 SEDIGLADP 302 (436)
T ss_pred HhhccCCCh
Confidence 999999974
No 7
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=6.7e-36 Score=262.87 Aligned_cols=267 Identities=30% Similarity=0.474 Sum_probs=228.2
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------- 61 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------- 61 (287)
||+|++||||++|++++|+..+++.+..++..+..||++|+||+|+||||+++++++.+.+
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 6799999999999999999999999999999998888999999999999999998775410
Q ss_pred ---------------------------------------------CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 62 ---------------------------------------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 62 ---------------------------------------------~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+|++||++.++...++.|++.++.++.+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 161 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA 161 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 17999999999988889999999988888889999
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d 176 (287)
++....+.+++++||..+.|.+++.+++..++..+++++|+.+++++++.+++.++||+|++++.++.++...+.++..+
T Consensus 162 ~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~ 241 (337)
T PRK12402 162 TRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEA 241 (337)
T ss_pred eCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999998775444444333
Q ss_pred Cc---cCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Q psy2281 177 QI---VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEH 252 (287)
Q Consensus 177 ~~---~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (287)
.. ........++++.+.+... +...+...+.+++ ..|+++..+...+......+++...+.+++..++++++
T Consensus 242 v~~~~~~~~~~~~i~~l~~ai~~~----~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~~~~~l~~~d~ 317 (337)
T PRK12402 242 AYEALGDVGTDEVIESLLDAAEAG----DFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLARLHRLAADADA 317 (337)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 11 1113345677777776444 4455556666665 78999999999987776667999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHH
Q psy2281 253 RIHKGSKPIFHIEAYVASF 271 (287)
Q Consensus 253 ~l~~g~~~~~~l~~~i~~~ 271 (287)
+++.|.++.++||.|++++
T Consensus 318 ~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 318 RLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHcCCCHHHHHHHHHHhh
Confidence 9999999999999999875
No 8
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.5e-36 Score=270.24 Aligned_cols=269 Identities=20% Similarity=0.251 Sum_probs=225.2
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
|..|++||||++|++++||+.+++.|+..+.+|++|| ++|+||+|+||||+++++++.+.+.
T Consensus 1 ~~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 1 MQALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred CccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 7899999999999999999999999999999999999 7999999999999999999887420
Q ss_pred ---------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 63 ---------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 63 ---------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
+++|||+|.++.+++++|+++++.+++++.||++++...++
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 99999999999999999999999999999999999998899
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccccc--CccC
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQ--QIVE 180 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d--~~~~ 180 (287)
.++++|||..++|.+++.+++..++..+++++|+.+++++++.+++.++|++|++++.+++++.+. +.++..+ ....
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg 240 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLG 240 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999877764 2332222 1111
Q ss_pred ccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-------CChHHHHHHHHHHHHHhhH
Q psy2281 181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN-------CDSDLKSKSIEMAAMFEHR 253 (287)
Q Consensus 181 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 253 (287)
....+.++++.+.+... +. ..+...+.++ .|++++.++..+..++... +....+.+.++.+++....
T Consensus 241 ~~~~~~I~~li~ai~~~-d~---~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~~~k~~ 314 (535)
T PRK08451 241 LLDPSKLEDFFQAILNQ-DK---EKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKSL 314 (535)
T ss_pred CCCHHHHHHHHHHHHhc-CH---HHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence 22234566666655443 33 3333333343 4788999999888777631 2344567788999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHH
Q psy2281 254 IHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 254 l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
+..|.++++||+.++++++...
T Consensus 315 l~~g~~~~i~l~~~~~~~~~~~ 336 (535)
T PRK08451 315 LKEGADDGFVLLLMLFKMKEAL 336 (535)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999998744
No 9
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.5e-35 Score=259.80 Aligned_cols=268 Identities=19% Similarity=0.217 Sum_probs=211.1
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
+|++||||++|++++|+++++..|...+..|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence 69999999999999999999999999999999998 8999999999999999999887641
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++.+++++|++.++.++.++.||++++...++.+
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCcccccC--ccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQQ--IVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d~--~~~~~ 182 (287)
+++|||+.+.|++++.+++.+++.++++.+|+.++++++..+++.|+|++|+|++.++.++.+. +.++..+. .....
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~ 246 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYH 246 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999998866443 22222110 01112
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----h----------CCh-----------
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----N----------CDS----------- 237 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----~----------~~~----------- 237 (287)
-.+.+.++.+.+..+..... ....+..++..|.++..++.++.+++.+ + ++.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~---al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSK---SLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDFE 323 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHHH
Confidence 33455666666554422222 2333445678899998888877777654 1 111
Q ss_pred ----HHHHHHHHHH----HHH-hhHHhcCCChHHHHHHHHHHHHH
Q psy2281 238 ----DLKSKSIEMA----AMF-EHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 238 ----~~~~~~~~~~----~~~-~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
..+.+....+ ... +.+++.+.++++.+|..+++++.
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 324 NVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 1122222111 111 34567889999999999999875
No 10
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.2e-34 Score=266.60 Aligned_cols=267 Identities=19% Similarity=0.223 Sum_probs=212.6
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++||+++++.|++++.+|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 48999999999999999999999999999999999 7999999999999999999987531
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++...++.|++.||+++.++.||+++|...+|..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 8999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccccc---CccCc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQ---QIVEP 181 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d---~~~~~ 181 (287)
+|+|||+.|+|+.++.+++.++++++++.+|+.++++.+..+++.++|++|++++.++..+.+. +.++..+ .....
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGAL 244 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999977655443 2222211 11111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------------------------hC
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------------------NC 235 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------------------~~ 235 (287)
-.+.+.++.+.++.. +...+...+.+++..|++...++.++...+++ .+
T Consensus 245 -d~~~i~~ll~aL~~~----d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~ 319 (830)
T PRK07003 245 -DQTYMVRLLDALAAG----DGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELL 319 (830)
T ss_pred -CHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhC
Confidence 123455666655543 33334444445555666665555544444433 23
Q ss_pred ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+.+.+...++.+......+....++++.+|..+.|++..
T Consensus 320 s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~ 358 (830)
T PRK07003 320 SPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAF 358 (830)
T ss_pred CHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 344455666777777778888899999999998887653
No 11
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-34 Score=264.33 Aligned_cols=267 Identities=17% Similarity=0.244 Sum_probs=211.7
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|.+||||++|++++||.++++.|+..+.+|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 57799999999999999999999999999999999 8999999999999999999887620
Q ss_pred ---------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 63 ---------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 63 ---------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
+++|||+|.++..++++|+++|+.++.++.||++++..+++
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 99999999999999999999999999999999999999999
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC--Cccccc--Ccc
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY--PFQIDQ--QIV 179 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de--p~~~~d--~~~ 179 (287)
.++++|||+.++|.+++.+++.+++.++++++|+.++++++..+++.++|++|.+++.+++++.+.+ .++..+ ...
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~ll 241 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887642 222211 111
Q ss_pred CccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------
Q psy2281 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--------------------------- 232 (287)
Q Consensus 180 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--------------------------- 232 (287)
.....+.++++.+.+... +...+. ..+.+++..|.++..++..+..++.
T Consensus 242 g~~~~~~i~~lv~al~~~-d~~~al---~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l 317 (584)
T PRK14952 242 GATDVALIDDAVDALAAD-DAAALF---GAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERM 317 (584)
T ss_pred CCCCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHH
Confidence 112234455555544332 222222 2233334455555444443333321
Q ss_pred ----HhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 233 ----ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 233 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
++++...+.++++.+......++.+.++++.||.++.+++.
T Consensus 318 ~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 318 REQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 23455566677777777778888999999999999999874
No 12
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.1e-34 Score=261.23 Aligned_cols=267 Identities=18% Similarity=0.218 Sum_probs=215.4
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++|++++++.|++.+..++.|| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 59999999999999999999999999999999999 8999999999999999999988641
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|+++++.+++++.||++++...++.+
T Consensus 85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccccc--CccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQ--QIVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d--~~~~~~ 182 (287)
+++|||..++|++++.+++..++..+++++|+.++++++..+++.++|++|.|++.+++++.+. +.++..+ ......
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~ 244 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTI 244 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999998877663 2333322 112233
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----h--------------------CChH
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----N--------------------CDSD 238 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----~--------------------~~~~ 238 (287)
..+.++++.+.+... +.. .+...+.+++..|.++..++.++...+.+ + ++.+
T Consensus 245 ~~~~i~~ll~al~~~-d~~---~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (509)
T PRK14958 245 EPLLLFDILEALAAK-AGD---RLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDRE 320 (509)
T ss_pred CHHHHHHHHHHHHcC-CHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHhCCHH
Confidence 345666777666543 333 33344556678899988777766665554 1 1112
Q ss_pred HHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.....+..+......++.+.++++.+|..+.++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 355 (509)
T PRK14958 321 DVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLA 355 (509)
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 22223334444456778888899999998888774
No 13
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.8e-34 Score=265.31 Aligned_cols=266 Identities=19% Similarity=0.236 Sum_probs=210.9
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
+|++||||++|++++|+.+++..|++.+..|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~ 84 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQ 84 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhc
Confidence 69999999999999999999999999999999999 7999999999999999999887541
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.|+..++++|++.||.++.+++||++++...++.+
T Consensus 85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc----CccCc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ----QIVEP 181 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d----~~~~~ 181 (287)
+++|||..++|++++.+++.+++.+++..+++.++++++..++..|+|++|+|++.++.++.+.+..-..+ .....
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~llG~i 244 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSI 244 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999987665433210000 00000
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------------------------hCC
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-------------------------NCD 236 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-------------------------~~~ 236 (287)
. ...+..+.+.+... +...+ ...+..++..|.++..++..+..++.. .++
T Consensus 245 D-~~~V~~llksI~~~-D~~aa---L~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s 319 (944)
T PRK14949 245 D-EQHVIALLKALTDA-DIGVL---MQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLS 319 (944)
T ss_pred C-HHHHHHHHHHHHcC-CHHHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCC
Confidence 1 11233444443222 32222 233334456666666666554444432 334
Q ss_pred hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
...+..+++.+.+...+|+.+.++++.||.++.++..
T Consensus 320 ~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~ 356 (944)
T PRK14949 320 PEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA 356 (944)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 4455667888888899999999999999999998865
No 14
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-33 Score=253.91 Aligned_cols=267 Identities=20% Similarity=0.221 Sum_probs=215.5
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
|.|++||||++|++++||+.+++.|++.+..|++|| ++|+||+|+||||+++++++.+.+.
T Consensus 1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 489999999999999999999999999999999998 9999999999999999999876321
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+++|||+|.++..++++|+++++.+++++.||++++..+++.
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~ 160 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP 160 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccCc--cCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQI--VEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~~--~~~ 181 (287)
.+++|||+.+.|++++.+++..++..+++++|+.+++++++.+++.++|++|.+++.+++++.+.. .++..+.. ...
T Consensus 161 ~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~ 240 (491)
T PRK14964 161 VTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGC 240 (491)
T ss_pred HHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999887643 33332211 111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----h----------------------C
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----N----------------------C 235 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----~----------------------~ 235 (287)
...+.++++.+.++.. +. ......+.+++..| .+..++..+...+.. + +
T Consensus 241 ~~~~~If~L~~aI~~~-d~---~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (491)
T PRK14964 241 VDKHILEDLVEAILLG-DA---QSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKIG 315 (491)
T ss_pred CCHHHHHHHHHHHHCC-CH---HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhCC
Confidence 2234577777776655 33 33333344454544 455566555443322 0 2
Q ss_pred ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
+.....+.++.+.+....++.+.++++.+|..+.+++.
T Consensus 316 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~ 353 (491)
T PRK14964 316 STIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY 353 (491)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence 33345566777788888899999999999999999865
No 15
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-33 Score=247.66 Aligned_cols=267 Identities=18% Similarity=0.184 Sum_probs=212.1
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
+|++||||++|++++||+++++.++..+..|+.|| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK 84 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 58999999999999999999999999999999999 7999999999999999999887420
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|++.++.++.++.++++++..+.+.+
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 8999999999999999999999999999999999988888999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~ 182 (287)
+++|||..++|++++.+++.+++..+++.+|+.+++++++.+++.++|++|+|++.+++++.++. .++..+ ......
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~ 244 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLL 244 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence 99999999999999999999999999999999899999999999999999999999998876542 222111 111122
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----------------------------h
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----------------------------N 234 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----------------------------~ 234 (287)
..+.++++.+.+... + .......+.+++..|.++..++..+..++.+ +
T Consensus 245 ~~~~i~~l~~ai~~~-~---~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (363)
T PRK14961 245 NEKQSFLLTDALLKK-D---SKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQN 320 (363)
T ss_pred CHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHHc
Confidence 233455555554332 2 2233333344455566666665544444332 2
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
++...+..+++.+.+...+++.+.++++.+|.++.++..
T Consensus 321 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 321 NKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 334455566788888888999999999999999988764
No 16
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-33 Score=255.74 Aligned_cols=268 Identities=22% Similarity=0.240 Sum_probs=227.9
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
|+-..+||||++|++++||.+++..|+..+.++.+|| ++|+||+|+||||+++++++.+.+.
T Consensus 1 ~~~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 1 MSALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred CchHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 6667799999999999999999999999999999999 6999999999999999999887420
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+++|||+|.++...++.|++.++.++.++.+|++++..+++.
T Consensus 81 ~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 899999999999999999999999988889999998888999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCcc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPD 182 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~ 182 (287)
++++|||..++|.+++.+++..++.++++++|+.++++++..+++.++|++|++++.+++++..+.+++..+ ......
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~ 240 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLP 240 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887765555433 223344
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------------hCChHHHHHHHHHHH
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------NCDSDLKSKSIEMAA 248 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 248 (287)
..+.++++.+.+... +.......+.+++..|.++..|+..+..++.+ ...+..+...++.++
T Consensus 241 ~~~~if~Li~al~~~----d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~ 316 (504)
T PRK14963 241 PQERLRGIAAALAQG----DAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALD 316 (504)
T ss_pred cHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHH
Confidence 556788888877554 33444444556778899999999988887763 234566788999999
Q ss_pred HHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 249 MFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 249 ~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
+.+.++..+.+ +..||..+..++.
T Consensus 317 ~~~~~~~~~~~-~~~l~~~l~~~~~ 340 (504)
T PRK14963 317 EQMERFARRSD-ALSLELALLHALL 340 (504)
T ss_pred HHHHHHHhccc-hhHHHHHHHHHHh
Confidence 99999988875 5668887877764
No 17
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.2e-33 Score=268.35 Aligned_cols=271 Identities=17% Similarity=0.244 Sum_probs=209.9
Q ss_pred CCc-cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 1 MSL-WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 1 m~~-w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
|.+ |.+||||++|++++||+.+++.|+..+.+|+++| |+|+||+||||||++++|++.+.+.
T Consensus 1 ~~~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 1 MALALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 444 8899999999999999999999999999999999 8999999999999999999988630
Q ss_pred ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++||||+|.|+...++.|+++|++++.++.||++++..
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 89999999999999999999999999999999999988
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC--Cccccc--
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY--PFQIDQ-- 176 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de--p~~~~d-- 176 (287)
++|.++|+|||+.+.|..++.+++.+++.++++++|+.+++..+..+++.++|++|.+++.+++++.+.+ .++..+
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~ 240 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAV 240 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999886532 222111
Q ss_pred CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------
Q psy2281 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG-------------------------- 230 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-------------------------- 230 (287)
.+........++++++.+... +...+. ..+..++..|.++..++..+..+
T Consensus 241 allg~~~~~~I~~lidAL~~~-D~a~al---~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~ 316 (824)
T PRK07764 241 ALLGVTDSALIDEAVDALAAG-DGAALF---GTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQL 316 (824)
T ss_pred HHhcCCCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHH
Confidence 111111223344444443221 222211 11222223333332222222111
Q ss_pred -----HHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 231 -----LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
..+.++...+.++++.+.+....++.+.++++.+|.++.+++...
T Consensus 317 ~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~~ 366 (824)
T PRK07764 317 DRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLPS 366 (824)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhhc
Confidence 122455566777888888888888899999999999999997644
No 18
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-33 Score=255.42 Aligned_cols=267 Identities=20% Similarity=0.232 Sum_probs=209.1
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------- 61 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------- 61 (287)
.|.+||||++|++++|++++++.|++.+.+|+++| ++|+||+|+||||+++++++.+.+
T Consensus 5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC 84 (700)
T PRK12323 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC 84 (700)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence 59999999999999999999999999999999999 799999999999999999998865
Q ss_pred ---------C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 62 ---------P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 62 ---------~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+ +++|||+|.++...+++|++.||+++.++.||+++|..
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 0 99999999999999999999999999999999999999
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc---
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--- 176 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--- 176 (287)
.++.++++|||+.+.|+.++.+++.+++.+++..+|+.+++++++.+++.++|++|++++.++..+.+... ++..+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~ 244 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRG 244 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998775554321 11110
Q ss_pred CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------------------
Q psy2281 177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----------------------- 233 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----------------------- 233 (287)
..... -.+.+.++.+.+... +...+..+ +-.+...|++...++.++...+.+
T Consensus 245 ~LG~~-d~~~i~~Ll~aL~~~-d~~~~l~l---~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~ 319 (700)
T PRK12323 245 MLGAI-DQSYLVRLLDALAAE-DGAALLAI---ADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRR 319 (700)
T ss_pred HhCCC-CHHHHHHHHHHHHcC-CHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHH
Confidence 00000 112344444443322 22222222 223344555554444433333322
Q ss_pred ---hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 234 ---NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
.++.+.+...++.+......|....++++.+|..+.|+...
T Consensus 320 ~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 320 LAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 34555566677778888888999999999999999887653
No 19
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.3e-33 Score=251.02 Aligned_cols=271 Identities=19% Similarity=0.228 Sum_probs=223.8
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------- 61 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------- 61 (287)
.|++||||++|++++|+..++..|+..+..|+.|| ++|+||+|+||||+++++++.+.+
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~ 85 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEIS 85 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHh
Confidence 58999999999999999999999999999999998 899999999999999999987642
Q ss_pred -----C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 62 -----P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 62 -----~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+ +|+|||+|.++...++.|+++++.++.++.+|++++...++.
T Consensus 86 ~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 86 SGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred cCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 0 999999999999999999999999988889999998888999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~ 181 (287)
++++|||..++|.+++.+++..++..+++++|+.+++++++.++.+++||+|++++.++++..+.+ .++..+ .....
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~ 245 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGL 245 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999876522 222111 11122
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------HHhCChHHHHHHHHH
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL---------------LANCDSDLKSKSIEM 246 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~ 246 (287)
...+.++++.+.+... + .......+.+++..|.++..++..+..++ .+.++.+.+.+++..
T Consensus 246 ~~~~~vf~L~~ai~~~-d---~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~~ii~~ 321 (451)
T PRK06305 246 LSQDSLYTLDEAITTQ-N---YAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLLEIIDF 321 (451)
T ss_pred CCHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHH
Confidence 2345566776655332 3 33344445566677888877755443221 235777888999999
Q ss_pred HHHHhhHHhcCCChHHHHHHHHHHHHHHHHH
Q psy2281 247 AAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277 (287)
Q Consensus 247 ~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~ 277 (287)
+.+.+.+++.|.++.+.+|.++.++...++.
T Consensus 322 l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~ 352 (451)
T PRK06305 322 LGESAKHIQLTIFEKTFLETVIIHLIRIYQR 352 (451)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887754
No 20
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.4e-33 Score=258.79 Aligned_cols=266 Identities=20% Similarity=0.263 Sum_probs=213.0
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------- 62 (287)
|++||||++|++++|+.++++.|...+.+|+++| |+|+||+|+||||+++++++.+.+.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEG 85 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcC
Confidence 7799999999999999999999999999999999 8999999999999999999887531
Q ss_pred ------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281 63 ------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 ------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~ 106 (287)
+++|||+|.++..++++|+++|+.++.++.||++++..+++.++
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 89999999999999999999999999999999999999999999
Q ss_pred HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC--ccCccH
Q psy2281 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ--IVEPDW 183 (287)
Q Consensus 107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~--~~~~~~ 183 (287)
++|||..++|++++.+++..++..+++++|+.++++++..+++.++|++|.+++.+++++.+.+ .++..+. .....-
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~ 245 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVD 245 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998877643 2222110 000111
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------------------------HHh
Q psy2281 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL-----------------------------LAN 234 (287)
Q Consensus 184 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-----------------------------~~~ 234 (287)
.+.++++.+.+... +.. .+...+.++...|.++..++..+..++ .+.
T Consensus 246 ~~~l~~ll~al~~~-d~~---~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~~A~~ 321 (576)
T PRK14965 246 RRLLLDISAAVFGR-DTR---ALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQAAA 321 (576)
T ss_pred HHHHHHHHHHHHcC-CHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHHc
Confidence 22355555554433 222 222223334445555544444332222 223
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
++...+..+++.+.+.+..|+.+.++++.+|.++.++..
T Consensus 322 ~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~ 360 (576)
T PRK14965 322 ADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAT 360 (576)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 555667788899999999999999999999999999876
No 21
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.5e-33 Score=251.50 Aligned_cols=268 Identities=19% Similarity=0.188 Sum_probs=220.1
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
.+|++||||++|++++|+..++..|+..+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 479999999999999999999999999999999887 9999999999999999999987430
Q ss_pred ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+++|||++.++..++++|+++++.++.++.||++++..
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 89999999999999999999999999999999999988
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC----Cccccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY----PFQIDQ 176 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de----p~~~~d 176 (287)
+++.++++|||..++|.+++.+++..++..+++++|+.+++++++.+++.++|++|.|++.+++++.+.+ .++..+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~ 248 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQV 248 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999866532 233322
Q ss_pred --CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------------------
Q psy2281 177 --QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------------- 233 (287)
Q Consensus 177 --~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------------- 233 (287)
........+.++++.+.++.. +.......+.+++..|.++..++..+...+..
T Consensus 249 V~~llg~~~~~~if~L~~ai~~~----d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~ 324 (507)
T PRK06645 249 INQMLGLVDSSVIIEFVEYIIHR----ETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDR 324 (507)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Confidence 122334445677777776554 34444555666778888887776544433221
Q ss_pred ------hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 234 ------NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 234 ------~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.++...+...++.+.+....++.+.++++.+|..+.++..
T Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~ 370 (507)
T PRK06645 325 TKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIY 370 (507)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 1223445566777778888899999999999999988865
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.8e-33 Score=253.63 Aligned_cols=268 Identities=19% Similarity=0.251 Sum_probs=213.2
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++|+..+++.|..++..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 58999999999999999999999999999999998 8999999999999999999987541
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|++.++.++.++.||++++...++..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 8999999999999999999999999989999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCcccccC--ccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQQ--IVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d~--~~~~~ 182 (287)
+++|||..++|++++.+++.+++.++++++|+.++++++..+++.|+|++|.|++.+++++.++ +.++..+. .....
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~ 243 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLI 243 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999988766553 22322221 11112
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------HhC
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL---------------------------ANC 235 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---------------------------~~~ 235 (287)
-.+.++++.+.+... +.. .+...+.++...|.++..++..+..++. +.+
T Consensus 244 d~e~IfdLldAI~k~-d~~---~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~ 319 (702)
T PRK14960 244 DRTIIYDLILAVHQN-QRE---KVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLI 319 (702)
T ss_pred CHHHHHHHHHHHHhc-CHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcC
Confidence 223566666665544 222 2223333444556665554443333322 234
Q ss_pred ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+.......++.+......++.+.++++.+|.++.++...
T Consensus 320 s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~ 358 (702)
T PRK14960 320 SAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF 358 (702)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence 445556677777788888999999999999999998653
No 23
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.4e-33 Score=251.26 Aligned_cols=269 Identities=24% Similarity=0.280 Sum_probs=222.7
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------ 61 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------ 61 (287)
|..|.+||||++|++++|+.++...|...+..|+.|| ++|+||||+||||+++++++.+.+
T Consensus 1 ~~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 1 MEALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred CchhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 7889999999999999999999999999999999998 899999999999999999988653
Q ss_pred ------C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 62 ------P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 62 ------~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
. +++|||+|.++..+++.|+++++.++.++.++++++.+..+
T Consensus 81 ~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence 0 89999999999989999999999998888888888888889
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccC
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVE 180 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~ 180 (287)
.++++|||..+.|.+++.+++..++..+++.+|+.++++++..+++.++||+|++++.++.+..+.+ .++..+ ....
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999998776533 233222 1112
Q ss_pred ccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC--Ch-HHHHHHHHHHHHHhhHHhcC
Q psy2281 181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC--DS-DLKSKSIEMAAMFEHRIHKG 257 (287)
Q Consensus 181 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~g 257 (287)
....+.+.++.+.+... +.......+.+++..|.+|..++..+...+...+ .+ .....+...+.+...++...
T Consensus 241 ~~~~~~i~~li~si~~~----d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~ 316 (472)
T PRK14962 241 LIPIEVVRDYINAIFNG----DVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA 316 (472)
T ss_pred CCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
Confidence 22345677777776544 3444555566778899999999999998888744 23 45666777778888888877
Q ss_pred CChHHHHHHHHHHHHH
Q psy2281 258 SKPIFHIEAYVASFMA 273 (287)
Q Consensus 258 ~~~~~~l~~~i~~~~~ 273 (287)
-.+..-.+..+.+++.
T Consensus 317 e~~~~l~~~~~~~~~~ 332 (472)
T PRK14962 317 EEKRLVCKLGSASIAT 332 (472)
T ss_pred chHHHHHHHHHHHHHH
Confidence 7777666666666654
No 24
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.6e-33 Score=254.04 Aligned_cols=269 Identities=19% Similarity=0.235 Sum_probs=219.7
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
..|++||||++|++++|+..+++.|+..+..|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 358999999999999999999999999999999998 8999999999999999999876421
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+++|||+|.++..+++.|+++|+.++.++.||++++...++.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~ 181 (287)
.+++|||..+.|++++.+++..++..+++++|+.+++.++..+++.++|++|++++.+++++.+.. .++..+ .....
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999988776532 222211 11111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------------------------hC
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------------------NC 235 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------------------~~ 235 (287)
...+.++++.+.+... +...+...+.+++..|++...++.++..++.+ .+
T Consensus 244 ~d~~~If~LldAL~~~----d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~ 319 (709)
T PRK08691 244 VDKQYLYELLTGIINQ----DGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTI 319 (709)
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcC
Confidence 2234566777766554 34444455556677788888777766665544 22
Q ss_pred ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+...+...++.+......++...++++.+|..+.|+...
T Consensus 320 ~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~ 358 (709)
T PRK08691 320 SGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAF 358 (709)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 334455566777777778888999999999999887653
No 25
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-32 Score=253.58 Aligned_cols=267 Identities=18% Similarity=0.208 Sum_probs=215.2
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------- 61 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------- 61 (287)
.|++||||++|++++|++++++.|++.+..|+.+| ++|+||+|+||||+++++++.+.+
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 49999999999999999999999999999999999 799999999999999999888753
Q ss_pred ---------C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 62 ---------P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 62 ---------~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+ +++|||+|.++...++.|+++++.++.++.||++++..
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 0 99999999999999999999999999999999999999
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--C
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--Q 177 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~ 177 (287)
.++..+++|||..++|++++.+++..++.+++.++|+.++++++..+++.++|++|.+++.+++++.+.. .++..+ .
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V~~ 244 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQ 244 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987766542 122111 1
Q ss_pred ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------------------------
Q psy2281 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA------------------------ 233 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~------------------------ 233 (287)
.......+.++++.+.+... +...+...+.++...|.++..++..+...+.+
T Consensus 245 ~Lg~~~~~~i~~LldaL~~~----d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (618)
T PRK14951 245 MLGSVDRSHVFRLIDALAQG----DGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVAR 320 (618)
T ss_pred HHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHH
Confidence 11112234566666665443 33334444555667788888877766655543
Q ss_pred ---hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 234 ---NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.++.+.....+..+......+....++++.+|..+.|+..
T Consensus 321 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~ 363 (618)
T PRK14951 321 LAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA 363 (618)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 1233344455666666777788888999999988888764
No 26
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.4e-32 Score=253.75 Aligned_cols=267 Identities=20% Similarity=0.241 Sum_probs=208.5
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++|+++++..|...+..|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 58999999999999999999999999999999999 7999999999999999999887541
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|++.+|+++.++.||++++..+++.+
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC---ccCc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ---IVEP 181 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~---~~~~ 181 (287)
+++|||..+.|++++.+++..++.++++.+|+.+++.++..++..|+|++|+|++.++..+...+ .++..+. ....
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~lg~~ 244 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTL 244 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999987665532 1211110 0000
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------Hh
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL---------------------------AN 234 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---------------------------~~ 234 (287)
+ .+.+.++.+.+... +...+ ...+..+...|.+++.++..+..++. ++
T Consensus 245 d-~~~~~~ll~al~~~-d~~~~---l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la~~ 319 (647)
T PRK07994 245 D-DDQALSLLEALVEG-DGERV---MALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELART 319 (647)
T ss_pred C-HHHHHHHHHHHHcC-CHHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHHHh
Confidence 0 11233333333222 22222 22233344555555555444433332 23
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
++.+.....++.+.+...++..+.++++.+|.++.++...
T Consensus 320 ~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~ 359 (647)
T PRK07994 320 LPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359 (647)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 4444455567778888888999999999999999887654
No 27
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.2e-32 Score=252.26 Aligned_cols=267 Identities=22% Similarity=0.280 Sum_probs=214.9
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|.+||||++|++++|++++++.|++.+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 38899999999999999999999999999999999 8999999999999999999887521
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|+++++.++.++.||++++...++.+
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 9999999999999999999999999999999999998899999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~ 182 (287)
+++|||+.+.|.+++.+++..++..+++++|+.+++++++.+++.++|++|.|++.+++++.+.+ .++..+ ......
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~ 244 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSV 244 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999998876543 222221 111112
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------------------------HHh
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL----------------------------LAN 234 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~----------------------------~~~ 234 (287)
..+.++++.+.+... +...+. +.+.+++..|.++..++..+..++ .+.
T Consensus 245 ~~~~i~~l~~al~~~-d~~~al---~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~~ 320 (559)
T PRK05563 245 SQEALDDLVDAIVEG-DVAKAL---KILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEK 320 (559)
T ss_pred CHHHHHHHHHHHHcc-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHh
Confidence 233455665554332 332222 223334445555554444333222 224
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
++...+.++++.+.+.+.+++.|.++++.+|.++.+++.
T Consensus 321 ~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 566677889999999999999999999999999999887
No 28
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=4.5e-32 Score=236.42 Aligned_cols=265 Identities=23% Similarity=0.323 Sum_probs=211.7
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
|.+|++||||++|++++|++++...+..++.+|..|| ++++||+|+||||+++++++....+
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~ 87 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNR 87 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHH
Confidence 3589999999999999999999999999999999998 5569999999999999998765321
Q ss_pred ---------------EEEEeCCCCC-CHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHH
Q psy2281 63 ---------------VIILNETDHL-TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVS 126 (287)
Q Consensus 63 ---------------~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~ 126 (287)
+++|||+|.+ ....+..++..++.++.++.++++++..+.+.++++|||..+.|+.|+.++...
T Consensus 88 l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 88 LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIE 167 (316)
T ss_pred HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHH
Confidence 8999999998 666778888889998888899999998889999999999999998888887764
Q ss_pred HH-------HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccC
Q psy2281 127 VL-------TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199 (287)
Q Consensus 127 ~l-------~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~ 199 (287)
++ ..++..+|+.++++++..+++.+.|+.|++++.++.+... ..++..+.. ......+.++.+.+ ...+
T Consensus 168 il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~~-~~i~~~~l~--~~~~~~~~~l~~~l-~~~d 243 (316)
T PHA02544 168 MMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAST-GKIDAGILS--EVTNSDIDDVVEAL-KAKD 243 (316)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcc-CCCCHHHHH--HhhHHHHHHHHHHH-HcCC
Confidence 43 3455667899999999999999999999999999977642 222221100 11123344444443 3333
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 200 PKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
...+. . +.. ..+.++..++.++...+...+....+....+.+++.+.++..|.++.++||++++++|..+
T Consensus 244 ~~~~~---~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~~ 313 (316)
T PHA02544 244 FKAVR---A-LAP--NYANDYASFVGKLYDELYPQVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLMLEC 313 (316)
T ss_pred HHHHH---H-HHH--HhccCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 33333 3 222 2367889999999888888888888999999999999999999999999999999998754
No 29
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.9e-32 Score=247.34 Aligned_cols=269 Identities=19% Similarity=0.242 Sum_probs=210.4
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
.+|++||||++|++++|+..++..|...+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 369999999999999999999999999999999999 8999999999999999999977530
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+++|||+|.++..+++.|+++++.++.++.||++++....+.
T Consensus 84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 999999999999999999999999999999999999998999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~ 181 (287)
++++|||..++|.+++.+++..++.++++++|+.+++.++..+++.++||+|++++.+++++.+.. .++..+ .....
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l~~ 243 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGI 243 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999998776532 222111 00001
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHH--------------------------HHHHHhC
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL--------------------------EGLLANC 235 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~--------------------------~~~~~~~ 235 (287)
...+.++++.+.+... +...+... +..+...|.+...++..+. ..+.+++
T Consensus 244 ~~~~~v~~ll~Al~~~-d~~~~l~~---~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 319 (546)
T PRK14957 244 IDSEEVYSIINAIIDN-DPKAILPA---IKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILAKI 319 (546)
T ss_pred CCHHHHHHHHHHHHcC-CHHHHHHH---HHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhC
Confidence 1122344544443322 22222222 2223333444444443332 1222345
Q ss_pred ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+......+++.+.+...++..+.+.++.+|..+.|+...
T Consensus 320 s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~ 358 (546)
T PRK14957 320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF 358 (546)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 666667778888889999999999999999999888754
No 30
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.5e-32 Score=253.62 Aligned_cols=268 Identities=19% Similarity=0.275 Sum_probs=219.2
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++|+..+++.|...+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 49999999999999999999999999999999999 8999999999999999999987520
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+++|||++.++..++++|+++++.+++++.||++++...++.
T Consensus 86 ~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 999999999999999999999999999999999999889999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~ 181 (287)
++++|||.+++|.+++.+++..++..+++++|+.+++++++.+++.++||+|++++.++++..+.+ .++..+ .....
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~ 245 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNI 245 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999998765543 222211 11112
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------------------------HH
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL----------------------------LA 233 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~----------------------------~~ 233 (287)
...+.++++.+.+... + .......+.+++..|.++..++..+...+ .+
T Consensus 246 ~~~~~iF~L~dai~~~-~---~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~qa~ 321 (614)
T PRK14971 246 LDYDYYFRLTDALLAG-K---VSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQAQ 321 (614)
T ss_pred CCHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence 2234556777666544 2 22233334556667777766554332211 11
Q ss_pred hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+++...+..+++.+.+.+.+++.|.++++.+|.++.++...
T Consensus 322 ~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 322 KCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 45556677889999999999999999999999999998775
No 31
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-32 Score=246.15 Aligned_cols=269 Identities=21% Similarity=0.264 Sum_probs=219.9
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
..+.||||++|++++|++.++..|++.+..++++| |+|.||.|+||||++|.+++.+.+.
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 36789999999999999999999999999999999 9999999999999999999998754
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|++++|++|++..|++++|.+.+++.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC--ccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ--IVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~--~~~~~ 182 (287)
++.|||+.+.|+.++.+++...+..++.++++.++++++..+++.+.|.+|.++..++.++.+.+ .++..+. .....
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~ 244 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLT 244 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888764 2222110 01111
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----h-----------------------
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-----N----------------------- 234 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-----~----------------------- 234 (287)
-...+..+...++.. +.......+..++..|..+..++.++..++.+ .
T Consensus 245 ~~~~~~~~~~~i~~~----d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (515)
T COG2812 245 DIEKLLSLLEAILKG----DAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQ 320 (515)
T ss_pred CHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHh
Confidence 122334444444333 44445555566778888888888777766643 1
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
++.......+..+......++.+.++++.+|.++.++....
T Consensus 321 ~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 321 ISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence 11122334556666777788899999999999999987753
No 32
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.7e-32 Score=252.16 Aligned_cols=269 Identities=22% Similarity=0.292 Sum_probs=212.6
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++||..+++.|+..+..|+.+| |+|+||+|+||||+++++++.+.+.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 59999999999999999999999999999999999 8999999999999999998876430
Q ss_pred ----------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 63 ----------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 63 ----------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
+++|||+|.++..++++|+++++.++..+.||++++..+++.++++
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence 9999999999999999999999999999999999998999999999
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCccHHH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEPDWKI 185 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~~~~~ 185 (287)
|||+.++|.+++.+++..++..+++++|+.+++++++.++.+++|++|+|+..++++..++.. ++..+ ........+
T Consensus 167 SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~ellg~~~~e 246 (725)
T PRK07133 167 SRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNE 246 (725)
T ss_pred hhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999999999999999999999999988765421 11110 000111112
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------------------------hCChHHHH
Q psy2281 186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA------------------------NCDSDLKS 241 (287)
Q Consensus 186 ~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~ 241 (287)
.+.++.+.+... + ...+...+..++..|.++..++..+..++.. .++.....
T Consensus 247 ~If~Ll~aI~~k-d---~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~~~s~~~l~ 322 (725)
T PRK07133 247 NLINLLNLLYSK-D---IKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKIDDDFAY 322 (725)
T ss_pred HHHHHHHHHHcC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHhcCCHHHHH
Confidence 344555544332 3 3333333445556677776665544333321 12233455
Q ss_pred HHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 242 ~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
.+++.+.+...+++.+.++++.+|.++.++....
T Consensus 323 ~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~ 356 (725)
T PRK07133 323 KFIEILFDLLKDLKISDNPNDTLEILIIKLLALS 356 (725)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Confidence 6678888899999999999999999999987643
No 33
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6e-32 Score=241.32 Aligned_cols=271 Identities=16% Similarity=0.233 Sum_probs=211.9
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------ 61 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------ 61 (287)
|+..++||||++|++++||+.+++.|+..+.+|+.|| ++|+||+|+||||+++++++.+.+
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 3457899999999999999999999999999999999 999999999999999999988743
Q ss_pred ----------------------C------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 62 ----------------------P------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 62 ----------------------~------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
. +++|||++.++...++.|+++++.++..+.+|+
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 0 899999999999899999999999998999999
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-----
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY----- 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de----- 170 (287)
+++...++.++++|||..++|.+++.+++..++..+++.+|+.+++++++.+++.++|++|.+++.++++..+.+
T Consensus 163 ~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~ 242 (397)
T PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGE 242 (397)
T ss_pred EeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCC
Confidence 988888999999999999999999999999999999999999999999999999999999999999999876632
Q ss_pred -Cccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHH----------------------
Q psy2281 171 -PFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK---------------------- 225 (287)
Q Consensus 171 -p~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~---------------------- 225 (287)
.++..+ ........+.++++.+.+... +...+. ..+.+++..|.++..++.
T Consensus 243 ~~It~~~v~~~v~~~~~~~vf~l~~ai~~~-~~~~al---~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~ 318 (397)
T PRK14955 243 GSIRYDKVAELLNYIDDEHFFAVTDAVADG-DAVAML---DVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVE 318 (397)
T ss_pred CccCHHHHHHHHCCCCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 122111 111122233445555544322 222221 112222233333333222
Q ss_pred ------HHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 226 ------YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
..+....++++...+.++++.+.+.+..++.+.++.+.+|.++.++....
T Consensus 319 ~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 319 RPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 11122234577778888999999999999999999999999999987644
No 34
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.8e-32 Score=248.74 Aligned_cols=267 Identities=17% Similarity=0.221 Sum_probs=215.0
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++|++.+++.|.+.+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C 92 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC 92 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence 58999999999999999999999999999999998 9999999999999999999876410
Q ss_pred ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+|+|||+|.++..++++|+++++.++.++.||++++..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 99999999999999999999999999999999999988
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--C
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--Q 177 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~ 177 (287)
+++.++++|||+.+.|.+++.+++..++.++++++|+.++++++..+++.++|++|.+++.+++++.+.. .++..+ .
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V~~ 252 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRD 252 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988766532 222211 0
Q ss_pred ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------------------------
Q psy2281 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL------------------------- 232 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~------------------------- 232 (287)
.........++++.+.++.. +.. .....+..++..|.+|..++..+...+.
T Consensus 253 llg~~~~~~if~L~~ai~~g-d~~---~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~kl 328 (598)
T PRK09111 253 MLGLADRARVIDLFEALMRG-DVA---AALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTRG 328 (598)
T ss_pred HhCCCCHHHHHHHHHHHHcC-CHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHHH
Confidence 11112223445555555443 222 2223333445556666555554432222
Q ss_pred ----HhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 233 ----ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 233 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
+.++...+.++++.+.+.+..++.+.++.+.+|.++.+++.
T Consensus 329 ~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~ 373 (598)
T PRK09111 329 AEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAY 373 (598)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 23455667788899999999999999999999999999865
No 35
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.9e-32 Score=246.32 Aligned_cols=268 Identities=19% Similarity=0.257 Sum_probs=204.9
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
.+|++||||++|++++|++.++..|+..+.+|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999999999877 8999999999999999999988641
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+|+|||+|.++...++.|+++++.++.++.||++++...++.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 899999999999999999999999988889999999889999
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~ 181 (287)
.+++|||+.++|++++.+++..++..+++.+|+.+++++++.++++++|++|+|++.+++++...+. ++..+ .....
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~lg~ 243 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGL 243 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999987644432 11111 00000
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHH------------------------------HH
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE------------------------------GL 231 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~------------------------------~~ 231 (287)
...+.++++.+.+ ..++...+..+ +..++..|.++..++..+.. .+
T Consensus 244 ~~~e~vfeLl~AL-~~~D~~aal~~---l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~~~ 319 (624)
T PRK14959 244 AGQELFLRLMEAL-AAQDCLGVANV---VRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWLGW 319 (624)
T ss_pred CCHHHHHHHHHHH-hcCCHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHHHH
Confidence 1112234444433 22222222221 22222333333332222211 22
Q ss_pred HHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.++++...+...++.+.+...++..+.+.++.+|.++.++..
T Consensus 320 A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~ 361 (624)
T PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAM 361 (624)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 234555566667788888888999999999999999998754
No 36
>KOG0990|consensus
Probab=100.00 E-value=2.1e-32 Score=226.34 Aligned_cols=270 Identities=26% Similarity=0.336 Sum_probs=222.6
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
++|+|||||..+.+++++.++...+......+..||+++|||||+|||+.+.+.+..++++
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid 108 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGID 108 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCc
Confidence 4899999999999999999999999999999999999999999999999999999998773
Q ss_pred -------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281 63 -------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 117 (287)
.|++||+|.++.++|++|++.++.+..+.+|+.+++.+..+.++++|||+.++|.
T Consensus 109 ~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRctrfrf~ 188 (360)
T KOG0990|consen 109 PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRCTRFRFA 188 (360)
T ss_pred chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcccccCCCC
Confidence 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccc---cc-C---ccCccHHHHHHH
Q psy2281 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQI---DQ-Q---IVEPDWKIYIRD 189 (287)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~---~d-~---~~~~~~~~~i~~ 189 (287)
+++......++.++++.+.....++....++.+|.||+|+|++.++.....- +.... .| . ....... .+++
T Consensus 189 pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~-dI~~ 267 (360)
T KOG0990|consen 189 PLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPS-DIRQ 267 (360)
T ss_pred CCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChh-HHHH
Confidence 9999999999999999999988999999999999999999999999877652 21111 11 0 1111111 4555
Q ss_pred HHHHHHhccChhHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHH
Q psy2281 190 TAKLIISEQSPKKLLEVRTRLYEL-LVHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267 (287)
Q Consensus 190 l~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~ 267 (287)
+.+.+++.........+ -.+ ...|+.-..++.++...++. .+....+..++..++..++++..|+++.+|+.+.
T Consensus 268 I~~~il~~~~~~~~~~i----s~lk~~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~ai 343 (360)
T KOG0990|consen 268 IIEKRMNGEDIELMLDD----SELKKPKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCMQKEQLKAI 343 (360)
T ss_pred HHHHHhcCchHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchhHHHHHHHH
Confidence 55555554332222222 112 13455667778888888876 4555778999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2281 268 VASFMAMYL 276 (287)
Q Consensus 268 i~~~~~~~~ 276 (287)
++.|...++
T Consensus 344 i~~~~~~~~ 352 (360)
T KOG0990|consen 344 IKNFAAELK 352 (360)
T ss_pred HHHHHHHHH
Confidence 998876543
No 37
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-31 Score=246.37 Aligned_cols=267 Identities=17% Similarity=0.226 Sum_probs=211.4
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------C------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG--------------P------ 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~--------------~------ 62 (287)
.++||||++|++++||+.++..|+..+.+|+++| ++|+||+|+||||+++++++.+.+ .
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 4689999999999999999999999999999999 999999999999999999988854 0
Q ss_pred --------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 63 --------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 63 --------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
+++|||+|.++..++++|+++++.++.++.||++++
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 999999999999999999999999999999999998
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC------CCc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ------YPF 172 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d------ep~ 172 (287)
...++.++++|||+.++|.+++.+++..++..+++.+|+.+++++++.+++.++|++|.+++.++++..+. +.+
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~I 245 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVI 245 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999988764 122
Q ss_pred cccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHH---------------------
Q psy2281 173 QIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE--------------------- 229 (287)
Q Consensus 173 ~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------------- 229 (287)
+..+ ........+.++++.+.+... +. ......+.+++..|..+..++.-+..
T Consensus 246 t~~~V~~lv~~~~e~~iF~L~dai~~~-d~---~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~ 321 (620)
T PRK14954 246 AYQGVAELLNYIDDEQFFDVTDAIAEN-DA---VKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPE 321 (620)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHcC-CH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence 2111 111112233445555544332 22 22222223333444444433331111
Q ss_pred -------HHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 230 -------GLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 230 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
...++++...+.++++.+.+.+.+++.+.++++.+|.++.++...
T Consensus 322 ~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~ 373 (620)
T PRK14954 322 SVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL 373 (620)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Confidence 122356667778889999999999999999999999999998763
No 38
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.7e-31 Score=234.30 Aligned_cols=269 Identities=20% Similarity=0.266 Sum_probs=211.7
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC----------C--------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------P-------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------~-------- 62 (287)
+.|++||||++|++++|++.+.+.+...++.|..|| ++|+||+|+||||+++++++.+.+ .
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 479999999999999999999999999999999886 999999999999999999998643 0
Q ss_pred --------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeec
Q psy2281 63 --------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI 116 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 116 (287)
+|++||++.++...++.++++++.++.++.+|++++..+.+.++++|||..++|
T Consensus 85 ~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~ 164 (367)
T PRK14970 85 ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDF 164 (367)
T ss_pred ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEec
Confidence 999999999998889999999999888888999988888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCccHHHHHHHHHHH
Q psy2281 117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPDWKIYIRDTAKL 193 (287)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~~~~~i~~l~~~ 193 (287)
++++.+++..++..+++++|+.+++++++.+++.++||+|++++.++++..+.. .++..+ ........+.++++.+.
T Consensus 165 ~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~a 244 (367)
T PRK14970 165 KRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDL 244 (367)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886532 222111 11112223445556655
Q ss_pred HHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------HHHhCChHHHHHHHH
Q psy2281 194 IISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG----------------------------LLANCDSDLKSKSIE 245 (287)
Q Consensus 194 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~~~~~~~~~~~~~ 245 (287)
+... +...+... +.+++..|.+|..++..+..+ ..++++...+.+++.
T Consensus 245 i~~~-~~~~a~~~---~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s~~~L~~~l~ 320 (367)
T PRK14970 245 ILEN-KIPELLLA---FNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQSFLLSGID 320 (367)
T ss_pred HHcC-CHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433 22222222 223334454554443322211 112466677788899
Q ss_pred HHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 246 MAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 246 ~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
.+.+.+..++.+.++.+.+|.++.++...
T Consensus 321 ~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 321 IANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 99999999999999999999999888653
No 39
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3e-31 Score=243.87 Aligned_cols=267 Identities=19% Similarity=0.277 Sum_probs=211.1
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++||+.++..|+..+.+|+++| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 37899999999999999999999999999999999 9999999999999999999887530
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||++.++..++++|+++++.++.++.|+++++...++.+
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 9999999999999999999999999999999999988889999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~ 182 (287)
+++|||+.++|.+++.+++..++.++++.+|+.++++++..+++.++|++|+|++.+++++.+.. .++..+ ......
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~llg~~ 244 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLT 244 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999998766532 222211 111111
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--------------------------HHhCC
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL--------------------------LANCD 236 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~--------------------------~~~~~ 236 (287)
....+.++.+.+... +...+.. .+..++..|.++..++..+..++ .+.++
T Consensus 245 ~~~~if~LidaI~~~-D~~~al~---~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~~~s 320 (563)
T PRK06647 245 GDEFLEKLASSILNE-DAKELLC---VLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLREFD 320 (563)
T ss_pred CHHHHHHHHHHHHcC-CHHHHHH---HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHHhCC
Confidence 123455555554333 2222222 22233344444444333222211 12456
Q ss_pred hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.....++++.+.+.+.+++.+.++++.+|.++.+++.
T Consensus 321 ~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~ 357 (563)
T PRK06647 321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILR 357 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999999875
No 40
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.2e-31 Score=242.97 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=209.5
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++||||++|++++|+.++++.|...+..++.+| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 58999999999999999999999999999999999 7999999999999999999887541
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|+++++.++.++.||++++..+++.+
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC--ccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ--IVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~--~~~~~ 182 (287)
+++|||..++|++++.+++..++.++++++|+.+++.+++.+++.++|++|++++.+++++.++. .++..+. .....
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~~~~~ 244 (527)
T PRK14969 165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAI 244 (527)
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999998776642 2221110 00111
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------------------------HhCC
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--------------------------ANCD 236 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--------------------------~~~~ 236 (287)
-.+.++++.+.+... +...+. ..+.++...|.+...++..+..++. ++++
T Consensus 245 ~~~~i~~ll~al~~~-~~~~~l---~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~s 320 (527)
T PRK14969 245 DQDYLFALLEALLAQ-DGAALL---AIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLS 320 (527)
T ss_pred CHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcCC
Confidence 122344554444322 222222 2223333445555444443333322 2445
Q ss_pred hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
.+....+++.+.+....+....++++.+|..+.|+...
T Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~ 358 (527)
T PRK14969 321 PEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAF 358 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcc
Confidence 55566677888888888899999999999999887753
No 41
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.8e-31 Score=237.78 Aligned_cols=267 Identities=23% Similarity=0.281 Sum_probs=214.2
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------- 61 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------- 61 (287)
.+|++||||++|++++|+..+...|+..+..|+++| ++|+||+|+||||+++++++.+.+
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 379999999999999999999999999999999999 789999999999999999988652
Q ss_pred -------------C------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 62 -------------P------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 62 -------------~------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
. +++|||+|.++..++++|+++++.++.++.++++++....+.
T Consensus 84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 0 999999999999999999999999998999999988888899
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~ 181 (287)
++++|||+.+.|++++.+++..++..+++.+|+.+++++++.+++.++|++|.+++.+++++.+.+. ++..+ .....
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~ 243 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGI 243 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999998766432 11111 11111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------------------hCChH
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-----------------------NCDSD 238 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-----------------------~~~~~ 238 (287)
.....++++.+.+... +...+. ..+.++...|.++..++..+..++.. .++..
T Consensus 244 ~~~~~vf~Li~ai~~~-d~~~al---~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~~~~ 319 (486)
T PRK14953 244 VSQESVRKFLNLLLES-DVDEAI---KFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEKPLE 319 (486)
T ss_pred CCHHHHHHHHHHHHCC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcCCHH
Confidence 2223466666665443 333333 33445567788887777665555433 11123
Q ss_pred HHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.+..+++.+.+...+++. .++++.+|.++.+++.
T Consensus 320 ~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~ 353 (486)
T PRK14953 320 ALLYLEDVINKAFSEART-RDPLRAYELAILKLLY 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence 344567788888889999 9999999999988864
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=1.1e-30 Score=231.42 Aligned_cols=266 Identities=22% Similarity=0.297 Sum_probs=206.4
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------- 61 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------- 61 (287)
++|++||||++|++++|+..+++.+...+..|..|| ++|+||+|+||||+++++++.+.+
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999999999999999999998 899999999999999999887631
Q ss_pred ----------------C---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 62 ----------------P---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 62 ----------------~---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
. +|+|||+|.++...++.+++.++.++.++.+|++++..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP 161 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHH
Confidence 0 899999999999889999999999888888889888888888
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~ 181 (287)
++++|||..+.|++++.+++..++..++++.|+.+++++.+.+++.++|++|++++.++++..+... ++..+ .....
T Consensus 162 ~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~ 241 (355)
T TIGR02397 162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGL 241 (355)
T ss_pred HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999998876432 22111 01111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHH---------------------------HHHHh
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE---------------------------GLLAN 234 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---------------------------~~~~~ 234 (287)
.....++++.+.+... +...+. ..+..+...|.++..++..+.. ...+.
T Consensus 242 ~~~~~i~~l~~ai~~~-~~~~a~---~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~~ 317 (355)
T TIGR02397 242 VDDEKLIELLEAILNK-DTAEAL---KILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALK 317 (355)
T ss_pred CCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHHh
Confidence 1223445555554332 222222 2222233334444333322211 12224
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~ 271 (287)
++.+....+++.+.+.+.+++.+.++.+.+|.++.++
T Consensus 318 ~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~ 354 (355)
T TIGR02397 318 LSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRL 354 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Confidence 5666677888999999999999999999999999876
No 43
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-30 Score=242.50 Aligned_cols=268 Identities=23% Similarity=0.284 Sum_probs=210.6
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
+|.+||||+.|++++|+..++..|...+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 79999999999999999999999999999998866 9999999999999999999987540
Q ss_pred ---------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 63 ---------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 63 ---------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
+++|||+|.++..++++|+++++.++.++.||++++..+.+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 99999999999999999999999999999999999988899
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccC--ccCc
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ--IVEP 181 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~--~~~~ 181 (287)
.++++|||..++|.+++.+++..++.++++++|+.++++++..+++.++|++|+|++.++++.++.+.++..+. ....
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~lvg~ 244 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDLLGA 244 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999998877654433221 1111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHH-----------------------------HHHHHHH
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK-----------------------------YLLEGLL 232 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-----------------------------~~~~~~~ 232 (287)
...+.++++.+.+... +...+...++. ++..|..+..++. ..+....
T Consensus 245 ~~e~~i~~Ll~ai~~~-d~~~al~~~~~---Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~A 320 (620)
T PRK14948 245 VPEQDLLNLLKALASN-DPESLLDSCRQ---LLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKLA 320 (620)
T ss_pred CCHHHHHHHHHHHHCC-CHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHHH
Confidence 1123344454444322 33322222221 2222333322222 1122223
Q ss_pred HhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+.++...+..+++.+.+.+..++.+.++++.+|.++.++...
T Consensus 321 ~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~ 362 (620)
T PRK14948 321 KQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362 (620)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence 356667777888999999999999999999999999988764
No 44
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-30 Score=242.69 Aligned_cols=267 Identities=20% Similarity=0.268 Sum_probs=211.4
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|.+||||++|++++|+..++..|+..+.+|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 48899999999999999999999999999999988 7999999999999999999876310
Q ss_pred --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+|+|||+|.++...++.|+++++.++.++.||++++..+++.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 899999999999999999999999998899999998888899
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~ 181 (287)
++++|||..+.|.+++..++..++.+++.++|+.++++++..+++.++|++|++++.++++..+.+ .++..+ .....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~ 244 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGI 244 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999877532 222211 11111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------HHH
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG----------------------------LLA 233 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~ 233 (287)
.....++++.+.+... +...+. ..+..+...|..+..++..+..+ ..+
T Consensus 245 s~~~~vf~Lidal~~~-d~~~al---~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~ 320 (585)
T PRK14950 245 SGDEEVKALAEALLAK-DLKAAL---RTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQ 320 (585)
T ss_pred CCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHh
Confidence 2233455666555433 222222 22333334444444443322222 223
Q ss_pred hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
.++...+..++..+.+.+..++.|..+.+.+|.++++++.
T Consensus 321 ~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~ 360 (585)
T PRK14950 321 IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL 360 (585)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 4666778889999999999999999899999999998875
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=4.9e-31 Score=241.16 Aligned_cols=264 Identities=25% Similarity=0.387 Sum_probs=204.0
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHh---cCCC-CcEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLK---EGDF-PHLLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~---~g~~-~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
||+|++||||+++++++|+..++..+..++. .|.. ++++|+||||+||||+++++++.+...
T Consensus 1 ~~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~ 80 (482)
T PRK04195 1 MMPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADV 80 (482)
T ss_pred CCCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHH
Confidence 7899999999999999999999999998885 4443 349999999999999999999877422
Q ss_pred --------------------EEEEeCCCCCCH----HHHHHHHHHHHhccCCcEEEEEeCCCCCCcH-HHhcccceeecC
Q psy2281 63 --------------------VIILNETDHLTR----EAQQALRRTMEKYITTCRLILCANSMSQVIP-AIRSRCLCIRIP 117 (287)
Q Consensus 63 --------------------~i~ide~d~l~~----~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~-~l~sr~~~~~~~ 117 (287)
+|+|||+|.++. ....++++.++. ....+|++++....+.. ++++||..+.|+
T Consensus 81 i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~ 158 (482)
T PRK04195 81 IERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFK 158 (482)
T ss_pred HHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEec
Confidence 899999999875 456778888874 34568888888877776 899999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccC--ccCccHHHHHHHHHHHHH
Q psy2281 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ--IVEPDWKIYIRDTAKLII 195 (287)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~--~~~~~~~~~i~~l~~~i~ 195 (287)
+++..++..++..++..+|+.+++++++.+++.++||+|.+++.++.+....+.++..+. ....+....++++...++
T Consensus 159 ~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~ 238 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVF 238 (482)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985543333332221 222333445667777777
Q ss_pred hccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCh-HHH---HHHHHHHHHHhhHHhcCCChHHHHHHHHHHH
Q psy2281 196 SEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS-DLK---SKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~ 271 (287)
...+...+.. .++ ....+++.++.++++.+...+.. +.. ...+..+..+..++..+.+ ++|..|.+.+
T Consensus 239 ~~k~~~~a~~---~~~---~~~~~~~~i~~~l~en~~~~~~~~~~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~~~~ 310 (482)
T PRK04195 239 KARNADQALE---ASY---DVDEDPDDLIEWIDENIPKEYDDPEDIARAYDALSRADIFLGRVKRTQN--YDLWRYASDL 310 (482)
T ss_pred CCCCHHHHHH---HHH---cccCCHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHHHHHhcCC--cchHHHHHHH
Confidence 6544443322 222 34678999999999888776543 333 3455555677778877655 8899998887
Q ss_pred HHH
Q psy2281 272 MAM 274 (287)
Q Consensus 272 ~~~ 274 (287)
|..
T Consensus 311 m~~ 313 (482)
T PRK04195 311 MTA 313 (482)
T ss_pred hhh
Confidence 653
No 46
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.3e-31 Score=242.50 Aligned_cols=227 Identities=22% Similarity=0.301 Sum_probs=188.3
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|.+||||++|++++|++.+++.|...+..|+.+| ++|+||+|+||||+++++++.+.+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHc
Confidence 59999999999999999999999999999999998 9999999999999999999987531
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|+++++.++.++.+|++++...++.+
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 9999999999999999999999999999999999998899999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEPD 182 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~~ 182 (287)
+++|||+.++|.+++.+++..++..++.++|+.+++++++.++++|+|++|+|++.++++..+.+. ++..+ ......
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ellg~~ 244 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLV 244 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999998776542 22111 000011
Q ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy2281 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233 (287)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 233 (287)
..+.+.++.+.+... + ...+...+.+++..|.++..++..+..++..
T Consensus 245 ~~~~Vf~Ll~AI~~k-d---~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 245 DNNKKINLIELIQKN-D---IEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred CHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 112345555555333 3 3334444566778899999988877776654
No 47
>KOG2028|consensus
Probab=100.00 E-value=2.4e-32 Score=229.29 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=194.1
Q ss_pred ccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
|.+|+.||+++++.+||.+.+ ..|...++++++|.++||||||||||||++.|+......
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDV 206 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHH
Confidence 678999999999999999875 578888999999999999999999999999998765422
Q ss_pred ------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC----CcHHHhcccceeecCCCC
Q psy2281 63 ------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ----VIPAIRSRCLCIRIPAPT 120 (287)
Q Consensus 63 ------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~----l~~~l~sr~~~~~~~~~~ 120 (287)
++||||++++....|+.|+..+| ++.++++....+| +..++.|||.++.+.+++
T Consensus 207 R~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE----~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 207 RDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE----NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred HHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceec----cCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 99999999999998888888777 3444444433333 788999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHH
Q psy2281 121 HEEIVSVLTNICKKEG-------------LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYI 187 (287)
Q Consensus 121 ~~~~~~~l~~~~~~~~-------------~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i 187 (287)
.+.+..++.+.+...+ +.+++..+++++.+|.||.|.|+|.++-.+-..-.-++... ...-.+
T Consensus 283 ~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~----~~~lSi 358 (554)
T KOG2028|consen 283 VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSS----RVLLSI 358 (554)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcc----cceecH
Confidence 9999999988554221 23577889999999999999999999976332111111110 001123
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHH
Q psy2281 188 RDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY 267 (287)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~ 267 (287)
.++.+.+...| ..+.+..+..|+.++. ++|++ +....++..+|.+||..|+++++ |
T Consensus 359 dDvke~lq~s~--~~YDr~Ge~HYntISA--------------~HKSm----RG~D~nAslY~LaRMLegGEdPL----Y 414 (554)
T KOG2028|consen 359 DDVKEGLQRSH--ILYDRAGEEHYNTISA--------------LHKSM----RGSDQNASLYWLARMLEGGEDPL----Y 414 (554)
T ss_pred HHHHHHHhhcc--ceecccchhHHHHHHH--------------HHHhh----cCCccchHHHHHHHHHccCCCcH----H
Confidence 44444444444 3556667777777654 66766 66777788999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhhhc
Q psy2281 268 VASFMAMYLQFMEDTLSN 285 (287)
Q Consensus 268 i~~~~~~~~~~~~~~~~~ 285 (287)
+||.|..++++|||++|+
T Consensus 415 VARRlvR~ASEDIGlaD~ 432 (554)
T KOG2028|consen 415 VARRLVRFASEDIGLADP 432 (554)
T ss_pred HHHHHHHHhhcccCcCCc
Confidence 999999999999999997
No 48
>PRK04132 replication factor C small subunit; Provisional
Probab=99.97 E-value=4.1e-29 Score=236.05 Aligned_cols=233 Identities=28% Similarity=0.422 Sum_probs=198.9
Q ss_pred EEEeC--CCCCcHHHHHHHHHHHhCCC---------------------------------------EEEEeCCCCCCHHH
Q psy2281 38 LLFYG--PSGAGKKTRIMALLKELYGP---------------------------------------VIILNETDHLTREA 76 (287)
Q Consensus 38 ~~l~G--p~G~GKTtl~~~l~~~~~~~---------------------------------------~i~ide~d~l~~~~ 76 (287)
.+..| |++.||||+++++++.++++ +++|||+|.++..+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence 45568 88999999999999997432 89999999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Q psy2281 77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLR 156 (287)
Q Consensus 77 ~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r 156 (287)
|++|++.|+.++++++||++||...++.++++|||+.++|++++.+++..++.++++++|+.++++++..++..|+||+|
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccccC--ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH
Q psy2281 157 RAILMCEASKVQQYPFQIDQQ--IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA 233 (287)
Q Consensus 157 ~al~~l~~~~~~dep~~~~d~--~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~ 233 (287)
+|++.++.+....+.++..+. .......+.+.++...++.. .+...+..+++++ ..|+++.+++.+++..+..
T Consensus 727 ~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~----~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~ 802 (846)
T PRK04132 727 RAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKG----NFLKAREKLREILLKQGLSGEDVLVQMHREVFN 802 (846)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999988765544333221 11112223455555544433 4667777788876 7899999999999999987
Q ss_pred -hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 234 -NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
.+++..+..++..+++++.++..|+++.+||++|+++++.+
T Consensus 803 ~~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 803 LPIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred cCCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 68889999999999999999999999999999999999753
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.97 E-value=3.7e-29 Score=224.75 Aligned_cols=244 Identities=18% Similarity=0.282 Sum_probs=183.1
Q ss_pred ccccccCCCCCCCccCcHHHHHH---HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANH---LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~---l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
||++||||++|++++|+.+++.. +...+..+..++++|+||||+||||+++++++.....
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV 80 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHH
Confidence 79999999999999999998665 9999998888889999999999999999999876533
Q ss_pred --------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC--CCCcHHHhcccceeecCCCCHHHHHH
Q psy2281 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM--SQVIPAIRSRCLCIRIPAPTHEEIVS 126 (287)
Q Consensus 63 --------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~--~~l~~~l~sr~~~~~~~~~~~~~~~~ 126 (287)
+++|||+|.++...++.|+..++. ....++.+++.. ..+.++++|||..+.|.+++.+++..
T Consensus 81 i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQ 158 (413)
T ss_pred HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHH
Confidence 899999999999999999988874 222333333322 35888999999999999999999999
Q ss_pred HHHHHHHHh--CC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccChhHH
Q psy2281 127 VLTNICKKE--GL-TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL 203 (287)
Q Consensus 127 ~l~~~~~~~--~~-~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~ 203 (287)
++.+.+... ++ .+++++.+.+++.++||.|++++.++.+...++. +.. +.+.++....... .
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~------It~----~~v~~~~~~~~~~-----~ 223 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDS------ITL----ELLEEALQKRAAR-----Y 223 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC------CCH----HHHHHHHhhhhhc-----c
Confidence 999988753 44 7799999999999999999999999987765221 111 1222222211000 0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh
Q psy2281 204 LEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTL 283 (287)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~ 283 (287)
.+-.+..++++ ..+.+.+ +....+.+.+|..+|..++.++. ++++.+.+++++|+|+|
T Consensus 224 d~~~~~~~~~i--------------sa~~ks~----rgsd~~aal~~l~~~l~~G~d~~----~i~rrl~~~a~edig~a 281 (413)
T PRK13342 224 DKDGDEHYDLI--------------SALHKSI----RGSDPDAALYYLARMLEAGEDPL----FIARRLVIIASEDIGLA 281 (413)
T ss_pred CCCccHHHHHH--------------HHHHHHH----hcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHhhccc
Confidence 01112222222 2233333 34455667889999999988877 79999999999999999
Q ss_pred hc
Q psy2281 284 SN 285 (287)
Q Consensus 284 ~~ 285 (287)
|.
T Consensus 282 ~~ 283 (413)
T PRK13342 282 DP 283 (413)
T ss_pred CH
Confidence 84
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.97 E-value=2.4e-29 Score=236.52 Aligned_cols=250 Identities=16% Similarity=0.200 Sum_probs=184.8
Q ss_pred CccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
.||++||||++|++++|+.+++ ..+...+..+..+|++|+||||+||||+++++++.....
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~ 95 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRA 95 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHH
Confidence 3899999999999999999887 478888899999999999999999999999998765322
Q ss_pred ----------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC----CCCcHHHhcccceeecCCCCHH
Q psy2281 63 ----------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM----SQVIPAIRSRCLCIRIPAPTHE 122 (287)
Q Consensus 63 ----------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~----~~l~~~l~sr~~~~~~~~~~~~ 122 (287)
+++|||+|.++...|+.|+..++. ..+++++... ..+.++++|||.++.|++++.+
T Consensus 96 ~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~----g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~e 171 (725)
T PRK13341 96 EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN----GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDE 171 (725)
T ss_pred HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC----ceEEEEEecCCChHhhhhhHhhccccceecCCCCHH
Confidence 799999999999989999888774 3344433222 2478899999999999999999
Q ss_pred HHHHHHHHHHH-------HhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHH
Q psy2281 123 EIVSVLTNICK-------KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLII 195 (287)
Q Consensus 123 ~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~ 195 (287)
++..++.+++. ..++.+++++++.+++.++||+|++++.++.++..... ...+.. ....+.+.+......
T Consensus 172 di~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~-~~~~~i--~It~~~~~e~l~~~~ 248 (725)
T PRK13341 172 DLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPP-DEDGLI--DITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-CCCCce--eccHHHHHHHHHHhh
Confidence 99999999987 45678899999999999999999999999987643221 000000 000111222111100
Q ss_pred hccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 196 SEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
. ......+..|+.+ ..+.|++ +.+..+.+.+|..+|..++.++. +++|.+.++
T Consensus 249 ~-----~ydk~gd~hyd~I--------------sa~~ksi----rgsD~daAl~~la~ml~~Gedp~----~I~Rrl~~~ 301 (725)
T PRK13341 249 V-----LYDKEGDAHFDTI--------------SAFIKSL----RGSDPDAALYWLARMVEAGEDPR----FIFRRMLIA 301 (725)
T ss_pred h-----hcccCCCCCHHHH--------------HHHHHHH----hcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHH
Confidence 0 0000011112221 2244555 56677888899999999998887 899999999
Q ss_pred HHHHHhhhhc
Q psy2281 276 LQFMEDTLSN 285 (287)
Q Consensus 276 ~~~~~~~~~~ 285 (287)
+++|+|+||.
T Consensus 302 asEdigladp 311 (725)
T PRK13341 302 ASEDVGLADP 311 (725)
T ss_pred HHhccCCCCh
Confidence 9999999874
No 51
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=3.6e-30 Score=202.79 Aligned_cols=204 Identities=20% Similarity=0.161 Sum_probs=175.6
Q ss_pred CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
+++..-+|..++++.++..+.+|+. ++++|||||||||++||+.+...++ .|.+|+.+.........+|+.++.++
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 4556667778888888889999999 9999999999999999999987766 89999865444446778899999999
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
|+..+++..|+.+|+..+.. .....++++..+.....+++.|+ .+.+..++.++|||+.|| |+++.|
T Consensus 84 Q~fnLFPHlTvleNv~lap~------~v~~~~k~eA~~~A~~lL~~VGL--~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPV------KVKKLSKAEAREKALELLEKVGL--ADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred ccccccccchHHHHHHhhhH------HHcCCCHHHHHHHHHHHHHHcCc--hhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 99999999999999876543 26788999999999999999999 789999999999999998 888999
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH-----HhcCCCHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL-----LVHSIPVNVLFK 225 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~~ 225 (287)
+++++|||||++|+.....+.+.+.+++++ +++||.+..+.++.|+++-+ +..| +|++++.
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g-~p~~~f~ 225 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG-PPEEFFD 225 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec-CHHHHhc
Confidence 999999999999999999999999999987 78999999999999998733 2334 6666653
No 52
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=2.8e-28 Score=196.18 Aligned_cols=213 Identities=16% Similarity=0.184 Sum_probs=178.6
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
+++.-+++..+++.++..++.|++ ++|.|||||||||+++.|.+.+.++ .|.||+.+..+.+ ...||+.++|+-|
T Consensus 6 nvsk~y~~~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d-~~~LRr~IGYviQ 82 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD-PVELRRKIGYVIQ 82 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC-HHHHHHhhhhhhh
Confidence 444555667778888888899999 9999999999999999999998877 8999988754433 4578999999999
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
...+++..|+.+|+..-.. +.+.+++.+.+++.+.++..|+.-.+...+++.++|||+.|| |+...|.
T Consensus 83 qigLFPh~Tv~eNIa~VP~-------L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 83 QIGLFPHLTVAENIATVPK-------LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred hcccCCCccHHHHHHhhhh-------hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence 9999999999998643222 557889999999999999999964456789999999999998 9999999
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHh
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKYLLEGLLAN 234 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~ 234 (287)
++++||||+++|++++..+.+.+.++.+. +++||+.+++.++.|++..+-.+. -+|+.++.+....+.+.
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~ 234 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVED 234 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHH
Confidence 99999999999999999999999999877 789999999999999987553322 27788877666666654
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.94 E-value=1.2e-25 Score=180.19 Aligned_cols=164 Identities=22% Similarity=0.321 Sum_probs=128.5
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
+..+++||++|++++||++++..++-.++ +...+|++||||||+|||||++.+++++..+
T Consensus 13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl 92 (233)
T PF05496_consen 13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDL 92 (233)
T ss_dssp -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHH
T ss_pred hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHH
Confidence 56788999999999999999988876663 2456789999999999999999999998644
Q ss_pred -----------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccce
Q psy2281 63 -----------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCLC 113 (287)
Q Consensus 63 -----------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~~ 113 (287)
++||||+|.+++..|+.|+..||... +...++-++|....+..|+++||.+
T Consensus 93 ~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 93 AAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI 172 (233)
T ss_dssp HHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred HHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence 99999999999999999999999521 1234666677777899999999986
Q ss_pred -eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 114 -IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 114 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
.++..++.+++.+++++.+...++++++++...++..|.|..|-|.+.+..+-
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999998764
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=4.1e-23 Score=179.46 Aligned_cols=256 Identities=18% Similarity=0.253 Sum_probs=180.3
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------------------- 62 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------- 62 (287)
+|++++|++.+++.+...+.+|+.|| ++|+||+|+||||+++.+++.+.+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 68999999999999999999999999 7999999999999999999976321
Q ss_pred --------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHH
Q psy2281 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVL 128 (287)
Q Consensus 63 --------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l 128 (287)
+++||++|.++..++++|+++++++++++.++++++.++.+.++++|||+.+.|.+++.+++..++
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 999999999999999999999999999999999999899999999999999999999999999888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CC-CcccccCccCccHHHHHHHHHHHHHh--ccChhHH
Q psy2281 129 TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QY-PFQIDQQIVEPDWKIYIRDTAKLIIS--EQSPKKL 203 (287)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--de-p~~~~d~~~~~~~~~~i~~l~~~i~~--~~~~~~~ 203 (287)
.+... + ++++..+.++.+++|...+|......-... .+ -+...+.......... ..+.+.+.. .+....+
T Consensus 162 ~~~~~--~--~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~l~~~~~~~~~~l 236 (313)
T PRK05564 162 SYKYN--D--IKEEEKKSAIAFSDGIPGKVEKFIEDDSLKNIRNMSLEILKDIKKSNINIL-LKYENFLIKYKENWEEIL 236 (313)
T ss_pred HHHhc--C--CCHHHHHHHHHHcCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCccHHHHH
Confidence 76442 3 477888889999999988876554221100 00 0000010111111111 111111211 1111112
Q ss_pred HHHHHHHHHHHh--cCCCHHHHH-H---HHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHH
Q psy2281 204 LEVRTRLYELLV--HSIPVNVLF-K---YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272 (287)
Q Consensus 204 ~~~~~~~~~l~~--~~~~~~~i~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~ 272 (287)
..+...+.+++. .+.....+. . .......+.++......+++.+.+.+..++.+.++.+.+|.++.++.
T Consensus 237 ~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~~~l~~n~n~~l~le~lll~~~ 311 (313)
T PRK05564 237 TCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQ 311 (313)
T ss_pred HHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhhh
Confidence 222223333331 111111111 1 22223344677888889999999999999999999999999998764
No 55
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=8.6e-27 Score=186.49 Aligned_cols=203 Identities=19% Similarity=0.147 Sum_probs=174.4
Q ss_pred CCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC--CCCHHHHHHHHHHHHhcc
Q psy2281 13 LQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD--HLTREAQQALRRTMEKYI 88 (287)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d--~l~~~~~~~l~~~i~~~~ 88 (287)
+..-+|+..+.+.+...+.+|+. +.+.||||+||||++|.+.+++.++ .|.+++.+ .+++..+..+++.++..+
T Consensus 14 v~~~fG~~~Ild~v~l~V~~Gei--~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlF 91 (263)
T COG1127 14 VTKSFGDRVILDGVDLDVPRGEI--LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLF 91 (263)
T ss_pred eeeecCCEEEecCceeeecCCcE--EEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEe
Confidence 33445666777888888899999 9999999999999999999999887 77777655 466777778899999999
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMC 162 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l 162 (287)
|...++-..|+.+|+..+++. ...++++.+.+.+...++..|+ ... +..++.++|||..+| |++..
T Consensus 92 Q~gALFssltV~eNVafplre------~~~lp~~~i~~lv~~KL~~VGL--~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 92 QQGALFSSLTVFENVAFPLRE------HTKLPESLIRELVLMKLELVGL--RGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred eccccccccchhHhhheehHh------hccCCHHHHHHHHHHHHHhcCC--ChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 999999999999999998884 5678899999999999999999 455 778899999998887 89999
Q ss_pred HHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
|.++++||||+++|++....+.++|.++.++ +++||+...+..++|+++.+.+.++ +++++.+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999988 7899999999999999986644333 5566654
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=9.8e-23 Score=180.28 Aligned_cols=146 Identities=29% Similarity=0.481 Sum_probs=129.9
Q ss_pred CCCCccCcHHHHHHHHHHHhcCC---------CCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGD---------FPH-LLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~---------~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.|++++|++.+++.|+..+..+. .|| ++|+||+|+|||++++++++.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999999999998876 788 9999999999999999998865320
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+++|||+|.++..++++|++.++.++.++.|+++++..+.+.+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llp 162 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLP 162 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChH
Confidence 8999999999999999999999999999999999999999999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l 162 (287)
+++|||+.+.|++++.+++..++.+ ..++ +++....++.+|+|+..+|+...
T Consensus 163 TIrSRc~~i~f~~~~~~~i~~~L~~---~~~~--~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 163 TIRSRCRHVALRTPSVEAVAEVLVR---RDGV--DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred HHHhhCeEEECCCCCHHHHHHHHHH---hcCC--CHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999999999998888863 2354 78888899999999999876653
No 57
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.9e-25 Score=174.56 Aligned_cols=195 Identities=16% Similarity=0.115 Sum_probs=162.0
Q ss_pred cCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------EEEEeCCCCCCHH-HHHH
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------VIILNETDHLTRE-AQQA 79 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------~i~ide~d~l~~~-~~~~ 79 (287)
+.-++++-.+|.+++++.++.-+.++.+ ..|.|||||||||++|++.+..... -|.+|+.+..... ....
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 4455677778888888999888899988 9999999999999999998765321 7888888766543 3567
Q ss_pred HHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcH
Q psy2281 80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNL 155 (287)
Q Consensus 80 l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~ 155 (287)
+|+.++.++|.+.-++ .+..+|+..+++ ......+++.+++++.+++..+ .+++.+.+. .+|||+.
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r-------~~g~~~~~ldeiVe~sLk~AaL--WdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLR-------LHGIKDKELDEIVESSLKKAAL--WDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHH-------hhccchHHHHHHHHHHHHHhHh--HHHhHHHhhCCccCCChhHH
Confidence 8999999999887666 688899998887 4455557888889988888777 666666664 5899998
Q ss_pred HH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 156 RR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 156 r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
|| |++..|.++++|||++++|+++...++++|.++.+. +++||++..+.++.|...-++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~ 222 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFY 222 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhc
Confidence 88 888889999999999999999999999999999977 789999999999999876443
No 58
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=7e-26 Score=194.75 Aligned_cols=209 Identities=14% Similarity=0.139 Sum_probs=172.9
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
++...+|...+++.++..+++|++ +.|.|||||||||++|+||+...++ .|.+|+.+...- ..-.|.++.++|
T Consensus 10 ~v~k~yg~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l---pp~kR~ig~VFQ 84 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV---PPEKRPIGMVFQ 84 (352)
T ss_pred eeeeecCCeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC---Chhhcccceeec
Confidence 344555656677888888899999 9999999999999999999999877 889998664321 112467999999
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
+..+++..|+.+|+..+++- -..+.++++.+++.++++..++ ++...+++.++|||+.|| |+...|.
T Consensus 85 ~YALFPHltV~~NVafGLk~------~~~~~~~~i~~rv~e~L~lV~L--~~~~~R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKV------RKKLKKAEIKARVEEALELVGL--EGFADRKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred CcccCCCCcHHHHhhhhhhh------cCCCCHHHHHHHHHHHHHHcCc--hhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence 99999999999999999882 2346778899999999999888 788999999999999998 8888899
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV----HSIPVNVLFKYLLEGLLA 233 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~----~~~~~~~i~~~~~~~~~~ 233 (287)
++++|||.+.+|...+..+...++++.++ +++|||.+++..++|++..+-. +-.+|+++.......+..
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA 234 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVA 234 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHH
Confidence 99999999999999888888889888877 7899999999999999986643 333777777655444443
No 59
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.4e-25 Score=181.85 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+.+.++..+++|++ +.+.|.||+|||||+|++.+...|+ -|++|+.|. ++......+|+.++.++|+..++-.
T Consensus 20 ~al~~vsL~I~~GeI--~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 20 TALDDVSLEIPKGEI--FGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeeccceEEEcCCcE--EEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence 345666677799999 9999999999999999999988777 888888543 5666778889999999999999988
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.|+.+|+..|+. ....+++++.+++.+.++..|+ ++....+++++|||+.|| |+...|+++++||+
T Consensus 98 rTV~~NvA~PLe-------iag~~k~ei~~RV~elLelVgL--~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEa 168 (339)
T COG1135 98 RTVFENVAFPLE-------LAGVPKAEIKQRVAELLELVGL--SDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEA 168 (339)
T ss_pred chHHhhhhhhHh-------hcCCCHHHHHHHHHHHHHHcCC--hhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCc
Confidence 899999999988 7778899999999999999999 788999999999999988 99999999999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++|+.+...+.+.+.++.++ ++++|.++.+.++|+++..|
T Consensus 169 TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm 215 (339)
T COG1135 169 TSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVL 215 (339)
T ss_pred cccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEe
Confidence 9999999999999999999887 78999999999999998854
No 60
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.1e-25 Score=174.73 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=172.9
Q ss_pred CCCCcc-CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHh
Q psy2281 12 NLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEK 86 (287)
Q Consensus 12 ~~~~~~-~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~ 86 (287)
++...+ +...+...++..+++|++ +.+.||||+|||||+|++.+...+. .|++++.+. +.......+++.+++
T Consensus 8 nl~k~yp~~~~aL~~Vnl~I~~GE~--VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm 85 (258)
T COG3638 8 NLSKTYPGGHQALKDVNLEINQGEM--VAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGM 85 (258)
T ss_pred eeeeecCCCceeeeeEeEEeCCCcE--EEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhcee
Confidence 444444 555667788888899999 9999999999999999999977655 777777554 445567778889999
Q ss_pred ccCCcEEEEEeCCCCCCcHHHhccccee--ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HH
Q psy2281 87 YITTCRLILCANSMSQVIPAIRSRCLCI--RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AI 159 (287)
Q Consensus 87 ~~~~~~~i~~~~~~~~l~~~l~sr~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al 159 (287)
++|...++.-.++.+|+..+...+...+ -|.-+++++.... -..+++.|+ .+.+.++...+|||++|| |+
T Consensus 86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~A-l~aLervgi--~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA-LDALERVGI--LDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHH-HHHHHHcCc--HHHHHHHhccCCcchhHHHHHHHHH
Confidence 9999999999888888877666554322 2555666555544 456777887 789999999999999998 88
Q ss_pred HHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHH
Q psy2281 160 LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFKYLLEG 230 (287)
Q Consensus 160 ~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~~~~~~ 230 (287)
...+++++.|||++++|+.+...+++.++++.++ +++-|+.+-+.+++++++.+-.+.+ ++.++..+....
T Consensus 163 ~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~ 242 (258)
T COG3638 163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDE 242 (258)
T ss_pred hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHH
Confidence 8889999999999999999999999999999877 7789999999999999997654432 566666666666
Q ss_pred HHH
Q psy2281 231 LLA 233 (287)
Q Consensus 231 ~~~ 233 (287)
++.
T Consensus 243 iYg 245 (258)
T COG3638 243 IYG 245 (258)
T ss_pred Hhc
Confidence 654
No 61
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=1.9e-21 Score=167.72 Aligned_cols=236 Identities=19% Similarity=0.241 Sum_probs=168.6
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-----------------------------
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------------------------- 61 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------------------------- 61 (287)
.|++++|++.+++.|...+.+|++|| ++|+||+|+||++++.++++.+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 57899999999999999999999988 999999999999999999877521
Q ss_pred ---------------------C-----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 62 ---------------------P-----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 62 ---------------------~-----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
. +++||++|.|+..++++|++.+|+++ ++.|++++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 0 99999999999999999999999999 78899999
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccC
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~ 177 (287)
+.++.++++++|||+.++|.+++.+++..++.+.....+. +.....+..+++|+.++|+..++...-. +
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~~~~--~------ 229 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQLQSI--P------ 229 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHHHHH--H------
Confidence 9999999999999999999999999999999987543333 2224678899999999999887643210 0
Q ss_pred ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHhhHHhc
Q psy2281 178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD-SDLKSKSIEMAAMFEHRIHK 256 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 256 (287)
..+.+...... . +..++....+.+. .+...+.- ..+..|+...+- ......+++.+......+..
T Consensus 230 -------~~~~~~~~~~~-~-~~~~~~~~a~~~~----~~~~~e~Q-~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~l~~ 295 (314)
T PRK07399 230 -------PELLQKLEQPP-K-SPLEALELAKDIS----EELDIEQQ-LWLIDYLQQHYWQKTKNRQLLKQLEKLRKQLLS 295 (314)
T ss_pred -------HHHHHHHHhcc-c-CHHHHHHHHHHHH----HhcCHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 01111111111 1 1222222222221 11111110 022222221110 01135667788888888999
Q ss_pred CCChHHHHHHHHHHHHH
Q psy2281 257 GSKPIFHIEAYVASFMA 273 (287)
Q Consensus 257 g~~~~~~l~~~i~~~~~ 273 (287)
++++.+.++.++.++..
T Consensus 296 nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 296 YVQPRLAWEVTLLELSQ 312 (314)
T ss_pred cCCcchhHHHHHHHHhc
Confidence 99999999999887753
No 62
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=4.1e-21 Score=167.46 Aligned_cols=253 Identities=20% Similarity=0.277 Sum_probs=173.9
Q ss_pred CCCCccC-cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------
Q psy2281 12 NLQKLDF-HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------------------- 62 (287)
Q Consensus 12 ~~~~~~~-~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------- 62 (287)
.++.+.| ++.+.+.|+..+.+|++|| ++|+||+|+||+|+++.+++.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3567888 8889999999999999999 7999999999999999998887421
Q ss_pred ------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281 63 ------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112 (287)
Q Consensus 63 ------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~ 112 (287)
+++||+++.++..++++|++++|++++++.||++++...++.++++|||+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC--CC-cccccCccCccHHHHHHH
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ--YP-FQIDQQIVEPDWKIYIRD 189 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d--ep-~~~~d~~~~~~~~~~i~~ 189 (287)
.+.|.+++.+++..++.. .|+ +......++..+ |+..+|+.....-.... +- ....+......... +..
T Consensus 163 ~i~~~~~~~~~~~~~L~~----~gi--~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQE----EGI--SESLATLLAGLT-NSVEEALALSEDDWFAQARALVIKLYEALHEKDLQS-FVF 234 (329)
T ss_pred eeeCCCCCHHHHHHHHHH----cCC--ChHHHHHHHHHc-CCHHHHHHHhcCchHHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence 999999999998777753 465 566666777665 67888876654211100 00 00000000001000 011
Q ss_pred HHHHHHhc-cChhH----HHHHHHHHHHHH--hcCCCHHHHHHH---HHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCC
Q psy2281 190 TAKLIISE-QSPKK----LLEVRTRLYELL--VHSIPVNVLFKY---LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK 259 (287)
Q Consensus 190 l~~~i~~~-~~~~~----~~~~~~~~~~l~--~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 259 (287)
+.+.+... .+.+. +..+...+.+++ ..|.+...+..+ ....+.+.++......+++.+.+...++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~~~~~~~~~l~~n~n 314 (329)
T PRK08058 235 VQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALELILEAKRRLNSNVN 314 (329)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11111100 01111 111222223332 223222222222 223344567788888999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy2281 260 PIFHIEAYVASFM 272 (287)
Q Consensus 260 ~~~~l~~~i~~~~ 272 (287)
+.+.+|.++.++.
T Consensus 315 ~~L~le~lll~~~ 327 (329)
T PRK08058 315 FQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988754
No 63
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=3.6e-22 Score=174.46 Aligned_cols=154 Identities=29% Similarity=0.483 Sum_probs=141.4
Q ss_pred cCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC----------------C--------
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------------P-------- 62 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------------~-------- 62 (287)
.+|+.+++++|+..+...|...+.+|+.|| ++|+||+|+||||+++.+++.+.+ .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 689999999999999999999999999999 999999999999999999888754 0
Q ss_pred -----------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 63 -----------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 63 -----------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
+++|||+|.++..++++|++.++.++.++.|++
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 999999999999999999999999999999999
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~ 163 (287)
+++.+..+.++++|||..++|++++.+++..++.......+ ++++....+++.|+|+.++|+..+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~ 242 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLN 242 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999999999999999999999999999999998654444 4688889999999999999998875
No 64
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=1.5e-20 Score=165.04 Aligned_cols=152 Identities=24% Similarity=0.416 Sum_probs=136.1
Q ss_pred cCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------C-----
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------P----- 62 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------~----- 62 (287)
.+|+++++++||+.+.+.|...+.+|+.|| ++|+||+|+||+|++.++++.+.+ .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 699999999999999999999999999999 999999999999999999887631 0
Q ss_pred ---------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCc
Q psy2281 63 ---------------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTC 91 (287)
Q Consensus 63 ---------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~ 91 (287)
+++|||+|.++..++++|++.++.++.++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 99999999999999999999999999899
Q ss_pred EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281 92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163 (287)
Q Consensus 92 ~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~ 163 (287)
.|+++++..+.+.++++|||+.+.|.+++.+++..++.+.. ...++.....++.+|+|+.++|+..++
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999987642 222445557889999999999988775
No 65
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.7e-25 Score=181.77 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=164.2
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
+.+...+...+...++..+++|+. +.+.||||+||||++|+||+...++ .|++++--.+.......-.+.++.++|
T Consensus 7 ~~~~~~~~~~a~~di~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ 84 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIKSGEL--VALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84 (345)
T ss_pred hhhhhcccccccccceeeecCCcE--EEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEe
Confidence 334444555555567777789999 9999999999999999999999887 677776511111112222467999999
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
+..++..+|+.+|+.++++-| -..+++.+++.++.+.++..++ +.-+.+++.++|||+.|| |+...|.
T Consensus 85 ~YALF~HmtVa~NIAFGl~~~-----~~~p~~~~~r~rv~elL~lvqL--~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 85 HYALFPHMTVADNIAFGLKVR-----KERPSEAEIRARVEELLRLVQL--EGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred chhhcccchHHhhhhhccccc-----ccCCChhhHHHHHHHHHHHhcc--cchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 999999999999999998744 2357778888899988888777 778899999999999888 7888899
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFK 225 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~ 225 (287)
++++|||++++|......+...+.++.+. +++|||.+++.+++|++..|-++. -+|+++..
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999888888888888877 889999999999999998764443 26676654
No 66
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=1.4e-20 Score=163.61 Aligned_cols=248 Identities=19% Similarity=0.203 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------------------------
Q psy2281 20 CKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------------------------ 62 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------ 62 (287)
....+.+...+.+|+.|| ++|+||+|+||++++.++++.+.+.
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSS 87 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 345678888889999999 8999999999999999999888542
Q ss_pred -----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC
Q psy2281 63 -----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~ 119 (287)
+++||++|.|+..+.++|++.+|+|++++.|+++++.++.++++++|||+.+.|+++
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~ 167 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPP 167 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCcccc-cCccCccHHHHHHHHHHHHHh
Q psy2281 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQID-QQIVEPDWKIYIRDTAKLIIS 196 (287)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~-d~~~~~~~~~~i~~l~~~i~~ 196 (287)
+.+++..++.+. .++ +++....++.+++|+..+|+..++.-... .+-...+ +..........+..+. .
T Consensus 168 ~~~~~~~~L~~~---~~~--~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~----~ 238 (334)
T PRK07993 168 PEQYALTWLSRE---VTM--SQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPSGDWLSLLPALN----H 238 (334)
T ss_pred CHHHHHHHHHHc---cCC--CHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHHhcCCCHHHHHHHHc----c
Confidence 999999888642 244 67777788999999999988775421000 0000000 0000011111111110 1
Q ss_pred ccChhHHHHHHHHHHHHH--hcCCCHHHHHHH---HHHHHHHhCChHHHHHHHHHHHHHhhHHhc--CCChHHHHHHHHH
Q psy2281 197 EQSPKKLLEVRTRLYELL--VHSIPVNVLFKY---LLEGLLANCDSDLKSKSIEMAAMFEHRIHK--GSKPIFHIEAYVA 269 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~--~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~~l~~~i~ 269 (287)
......+.-+...+.+++ ..|. ...+..+ ....+.+.++.......++.+.+...++.. +.|..+.+|.++.
T Consensus 239 ~~~~~~L~~l~~~~rD~l~~~~~~-~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~N~N~~L~le~lll 317 (334)
T PRK07993 239 EQAPARLHWLATLLMDALKRQHGA-AYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVNRELLLTDLLL 317 (334)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCC-cceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 111111222223333433 2222 1112222 222444566777777888999999998885 9999999999999
Q ss_pred HHHHHHHH
Q psy2281 270 SFMAMYLQ 277 (287)
Q Consensus 270 ~~~~~~~~ 277 (287)
++...+..
T Consensus 318 ~~~~~~~~ 325 (334)
T PRK07993 318 RIEHYLQP 325 (334)
T ss_pred HHHHHHcc
Confidence 88776544
No 67
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.9e-25 Score=179.94 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=153.5
Q ss_pred CccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE
Q psy2281 15 KLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR 92 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~ 92 (287)
..++...+.+.++..+.+|++ +.|.||||||||||++++++...+. .|.+++.....+ ...+.+++|+..
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p------~~~~~~vFQ~~~ 82 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP------GPDIGYVFQEDA 82 (248)
T ss_pred EEeCceEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC------CCCEEEEeccCc
Confidence 334445667788888899999 9999999999999999999998877 788877543111 123677888999
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
+++..|+.+|+..++. ....+.++..+++.+.++..|+ .+....++.++|||+.|| |+...|++++
T Consensus 83 LlPW~Tv~~NV~l~l~-------~~~~~~~e~~~~a~~~L~~VgL--~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 83 LLPWLTVLDNVALGLE-------LRGKSKAEARERAKELLELVGL--AGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred ccchhhHHhhheehhh-------ccccchHhHHHHHHHHHHHcCC--cchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999988877 4445677777799999999998 788889999999998888 8888899999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|..++..+.+.+.++.++ +++||+.+++..+.|+++.+
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl 204 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVL 204 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEe
Confidence 99999999999999999888888766 88999999999999998855
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.88 E-value=1.4e-21 Score=170.89 Aligned_cols=165 Identities=24% Similarity=0.333 Sum_probs=138.2
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHh----cCC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK----EGD-FPHLLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~----~g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
+|..+|||++|++++|+.+.+..+...+. .+. .+|++|+||||+||||+++++++.+...
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l 93 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDL 93 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHH
Confidence 47789999999999999999888877763 233 3459999999999999999999986432
Q ss_pred -----------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhccc-c
Q psy2281 63 -----------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRC-L 112 (287)
Q Consensus 63 -----------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~-~ 112 (287)
+++|||++.++...++.++..++... +...++.+++....+.++++||| .
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 99999999998877777777666431 12456667777778899999998 4
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV 167 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~ 167 (287)
.+.|.+++.+++.+++.+.+...++.+++++...+++.|+|+.|.+...+..+..
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998888886543
No 69
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=1.3e-20 Score=163.46 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=164.8
Q ss_pred HHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------------
Q psy2281 25 HLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------------------- 62 (287)
Q Consensus 25 ~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------------- 62 (287)
..+.++.+|+.|| ++|+||+|+||+|+++.+++.+.+.
T Consensus 11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence 4455566799999 9999999999999999999888641
Q ss_pred ------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHH
Q psy2281 63 ------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEI 124 (287)
Q Consensus 63 ------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~ 124 (287)
+++||++|.|+..++++|++.+|++++++.|+++++..+.++++++|||+.+.|.+++.+++
T Consensus 91 iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~ 170 (328)
T PRK05707 91 VRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEES 170 (328)
T ss_pred HHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCcccccCcc--CccHHHHHHHHHHHHHhccCh
Q psy2281 125 VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQIDQQIV--EPDWKIYIRDTAKLIISEQSP 200 (287)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~d~~~--~~~~~~~i~~l~~~i~~~~~~ 200 (287)
.+++..... + .+++....++.+++|...+|+...+.-... .+-+..+.... ..... ++.+.+-.....
T Consensus 171 ~~~L~~~~~--~--~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~~~~~~----~~~~~~~k~~~~ 242 (328)
T PRK05707 171 LQWLQQALP--E--SDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQQSAS----QLAESWLKVPLL 242 (328)
T ss_pred HHHHHHhcc--c--CChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcCcccHH----HHHHHHccCCHH
Confidence 999876431 2 255666777889999999987665321100 00000000000 00111 122222111111
Q ss_pred hHHHHHHHHHHHHH--hcCCCHH-HHHH---HHHHHHHHhCChHHHHHHHHHHHHHhhHHh--cCCChHHHHHHHHHHHH
Q psy2281 201 KKLLEVRTRLYELL--VHSIPVN-VLFK---YLLEGLLANCDSDLKSKSIEMAAMFEHRIH--KGSKPIFHIEAYVASFM 272 (287)
Q Consensus 201 ~~~~~~~~~~~~l~--~~~~~~~-~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~~l~~~i~~~~ 272 (287)
..+.-+...+.+++ ..|.+.. .+.. +....+.+.++.......++.+.+...++. .+.|..+.+|.++.++.
T Consensus 243 ~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~le~lll~~~ 322 (328)
T PRK05707 243 LLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNRQLLLEALLVQWA 322 (328)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 11222333333443 2332221 1111 223334456677777888888888888875 79999999999999886
Q ss_pred HH
Q psy2281 273 AM 274 (287)
Q Consensus 273 ~~ 274 (287)
..
T Consensus 323 ~~ 324 (328)
T PRK05707 323 GL 324 (328)
T ss_pred HH
Confidence 54
No 70
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.5e-25 Score=190.31 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=166.3
Q ss_pred CCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhcc
Q psy2281 13 LQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYI 88 (287)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~ 88 (287)
+...+|...+++.++..+++|++ +.|.|||||||||++|+||+...++ -|+||+.+. +.+. .|.+..++
T Consensus 9 v~K~yg~~~~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~-----~R~iamVF 81 (338)
T COG3839 9 VRKSFGSFEVLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE-----KRGIAMVF 81 (338)
T ss_pred eEEEcCCceeeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----HCCEEEEe
Confidence 33334433356677777899999 9999999999999999999998876 888898654 3333 36799999
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
|+..+++.+|+.+|+..+++ ....+++++.+++.++++..++ ++...+++.++|||+.|| |+...|
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk-------~~~~~k~ei~~rV~eva~~L~l--~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLK-------LRGVPKAEIDKRVKEVAKLLGL--EHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred CCccccCCCcHHHHhhhhhh-------hCCCchHHHHHHHHHHHHHcCC--hhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 99999999999999999998 5677899999999999999888 788888999999999988 888889
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKYLLEGL 231 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~ 231 (287)
+++++|||++.+|...+..+...+.++.++ |.+|||..++..+.|++..+..+. -+|.++.......+
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 999999999999998888888888888776 789999999999999987553222 25666655443333
No 71
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=9.6e-25 Score=180.03 Aligned_cols=208 Identities=15% Similarity=0.103 Sum_probs=157.9
Q ss_pred cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281 17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI 94 (287)
Q Consensus 17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i 94 (287)
++...+++.++..+.+|++ ++|.||||||||||++++++.+.+. .|.+|+.+..+ -....+.+.+.+++|.....
T Consensus 12 y~~~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~-~~~kelAk~ia~vpQ~~~~~ 88 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS-LSPKELAKKLAYVPQSPSAP 88 (258)
T ss_pred ECCeeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh-cCHHHHhhhEEEeccCCCCC
Confidence 4455567778888899999 9999999999999999999998865 89999977432 22456778899988876544
Q ss_pred EEeCCCCCCcHHHhcccce-eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 95 LCANSMSQVIPAIRSRCLC-IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 95 ~~~~~~~~l~~~l~sr~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
+..++.+-+.. .|... -.|..+++++.. .+.+.++..|+ .+.+.+.+.++|||+.|+ |+...+.++++
T Consensus 89 ~~~tV~d~V~~---GR~p~~~~~~~~~~~D~~-~v~~aL~~~~~--~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 89 FGLTVYELVLL---GRYPHLGLFGRPSKEDEE-IVEEALELLGL--EHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred CCcEEeehHhh---cCCcccccccCCCHhHHH-HHHHHHHHhCc--HHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 44455554433 34432 123445555444 66677777787 677888899999999998 66777789999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL-----LVHSIPVNVLFKYLLEGLLA 233 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~~~~~~~~~~ 233 (287)
||||+.+|......+.+.+.++.++ +++.|+.+.+.+++|++..+ ...|.+.+.+..+....++.
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence 9999999999999999999999865 78999999999999988733 44566666666777666654
No 72
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.87 E-value=1.4e-23 Score=162.13 Aligned_cols=182 Identities=20% Similarity=0.230 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
..+...++..+.+|++ ++++||||+||||+++.|++...++ .|.+.+.|. +.......|++.++.++|+.+++.
T Consensus 15 ~~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 4467777777899999 9999999999999999999999877 777777664 344456678999999999999999
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.-|+.+|+..+++ .-..+++++.+++...++..|+ .+.+...+.++|||+.|| |+...|.+++.||
T Consensus 93 ~~tvyeNVA~pL~-------v~G~~~~~i~~rV~~~L~~VgL--~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE 163 (223)
T COG2884 93 DRTVYENVALPLR-------VIGKPPREIRRRVSEVLDLVGL--KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE 163 (223)
T ss_pred cchHhhhhhhhhh-------ccCCCHHHHHHHHHHHHHHhcc--chhhhcCccccCchHHHHHHHHHHHccCCCeEeecC
Confidence 9999999999987 6678889999999999999999 678888899999999988 8888899999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
||..+|+.....+++++.++... ++.||+..-+.....++..
T Consensus 164 PTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~ 209 (223)
T COG2884 164 PTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA 209 (223)
T ss_pred CCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEE
Confidence 99999999999999999888776 7899998888877666543
No 73
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.4e-20 Score=163.22 Aligned_cols=247 Identities=28% Similarity=0.363 Sum_probs=167.2
Q ss_pred CccCcHHHHHHHHHHHh-cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------------C------
Q psy2281 15 KLDFHCKQANHLRNLLK-EGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------------P------ 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~-~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------------~------ 62 (287)
+++++......+..+.. .|+.|| ++|+||+|+||||++.++++.+.+ +
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 56777777777777775 788999 999999999999999999998872 2
Q ss_pred ------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281 63 ------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112 (287)
Q Consensus 63 ------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~ 112 (287)
+|+|||+|.++.++++++++.++.++.+++|+++++.+..+.++++|||+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~ 161 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQ 161 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcce
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc---CccCc-cHHHHH
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ---QIVEP-DWKIYI 187 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d---~~~~~-~~~~~i 187 (287)
.++|++++......+.+ +.....+...+.||+|++++.++........ .+... ..... ......
T Consensus 162 ~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (325)
T COG0470 162 RIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAALEIGEESIYEALLLALPESLAQLAA 230 (325)
T ss_pred eeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHhcccHHHHHHHHHhhChhhcccccH
Confidence 99998854433333322 4567888999999999999999988776211 00000 00000 000000
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh----CChHHHHHHHHHHHHHhhHHhcCCChHHH
Q psy2281 188 RDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN----CDSDLKSKSIEMAAMFEHRIHKGSKPIFH 263 (287)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 263 (287)
.++...... ... ......+ . .+...+.............+... ............+..+..++..+....++
T Consensus 231 ~~~~~~~~~-~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (325)
T COG0470 231 LELLKLAEN-KFL-EALEKLW-L-LLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLLALIQ 306 (325)
T ss_pred HHHHHHHHh-cch-hHHHHHH-H-HHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 000 1111111 1 12233344444333333333321 23444566778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2281 264 IEAYVASFMAMYL 276 (287)
Q Consensus 264 l~~~i~~~~~~~~ 276 (287)
+..++..++....
T Consensus 307 ~~~~~~~~~~~~~ 319 (325)
T COG0470 307 LENLLAELLLLQL 319 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776544
No 74
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=8e-23 Score=165.45 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=148.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC--CCCCHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET--DHLTREAQQALR-RTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~--d~l~~~~~~~l~-~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+++|++ +.|.||||||||||++++.+...++ .+++++. ..++......+| +.+++++|+..++..
T Consensus 20 ~L~~v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 20 ALKDVNLEIEAGEF--VAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 45566666789999 9999999999999999999988877 7888864 445555555554 459999999999999
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-LRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.|+.+|+..|+. +......+..++....++..|+ .+... .++.++|||+.|| |+...|.+++.||
T Consensus 98 ltv~ENv~lpl~-------~~~~~~~~~~~~~~~l~~~lgl--~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE 168 (226)
T COG1136 98 LTVLENVELPLL-------IAGKSAGRRKRAAEELLEVLGL--EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE 168 (226)
T ss_pred CCHHHHHHhHHH-------HcCCChhHHHHHHHHHHHhcCC--hhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 999999887776 5555554677778888888888 55666 7799999999998 8888899999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhc
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVH 216 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 216 (287)
||..+|..+...+.+.+.++.++ +++||+...+. .+|+++.+..+
T Consensus 169 PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG 218 (226)
T COG1136 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDG 218 (226)
T ss_pred ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCC
Confidence 99999999999999999999876 78999986555 56776655443
No 75
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=9e-24 Score=169.85 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~ 97 (287)
+++.++..+.+|+. +.|+||||||||||++++++...+. -|.+|+-..........+++.+..++|++. +=+..
T Consensus 22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 55666666689999 9999999999999999999998877 888888654333222355666777777653 21222
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
++.+-+.++++ ....++.+.+ +.++++..|+. +....+++.++|||+.|| |+...|+++++|||+
T Consensus 100 tv~~~l~Epl~-------~~~~~~~~~~--i~~~L~~VgL~-~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 100 TVGRILSEPLR-------PHGLSKSQQR--IAELLDQVGLP-PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred hHHHHHhhhhc-------cCCccHHHHH--HHHHHHHcCCC-HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 22233555554 3444443333 88888999995 445668899999999999 888889999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+.+|......+.+++.++.++ ++++|+...+..+||++..+.+
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~ 217 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN 217 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC
Confidence 999999999999999999887 8899999999999999886544
No 76
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.4e-20 Score=154.08 Aligned_cols=163 Identities=25% Similarity=0.318 Sum_probs=138.7
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
...||++|++++||.++++.++-+++ +....|++|+||||.|||||++.+++++...
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaai 97 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAI 97 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHH
Confidence 35899999999999999999998883 2345679999999999999999999998644
Q ss_pred --------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccc-eee
Q psy2281 63 --------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCL-CIR 115 (287)
Q Consensus 63 --------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~-~~~ 115 (287)
++||||+|.+++...+.|...||.+. +...+|-++|....+..|++.||. ..+
T Consensus 98 Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~r 177 (332)
T COG2255 98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQR 177 (332)
T ss_pred HhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeee
Confidence 99999999999988888888888521 123456666777789999999995 466
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168 (287)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~ 168 (287)
+.-++.+++.+++.+-....++.++++....++..|.|-.|-|...+..+--+
T Consensus 178 lefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDf 230 (332)
T COG2255 178 LEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDF 230 (332)
T ss_pred eecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999998876543
No 77
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=5.1e-19 Score=152.38 Aligned_cols=245 Identities=16% Similarity=0.111 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------------------------
Q psy2281 20 CKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------------------------ 62 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------ 62 (287)
....+.+...+.+|+.|| ++|+||+|+||+++++.+++.+.+.
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I 87 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI 87 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC
Confidence 456778889999999999 8999999999999999999888542
Q ss_pred ----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCC
Q psy2281 63 ----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPT 120 (287)
Q Consensus 63 ----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~ 120 (287)
+++||++|.|+..++++|++.+|++++++.|+++++..+.++++++|||+.+.|.+++
T Consensus 88 ~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~ 167 (325)
T PRK06871 88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE 167 (325)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCccccc-CccCccHHHHHHHHHHHHHhc
Q psy2281 121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQIDQ-QIVEPDWKIYIRDTAKLIISE 197 (287)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~d-~~~~~~~~~~i~~l~~~i~~~ 197 (287)
.+++..++.... +. ++.....+..+++|...+|+..+..-... .+-+..+. ..........+..+.+ .
T Consensus 168 ~~~~~~~L~~~~---~~--~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~k----~ 238 (325)
T PRK06871 168 EQQALDWLQAQS---SA--EISEILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSPLELLPLFDK----E 238 (325)
T ss_pred HHHHHHHHHHHh---cc--ChHHHHHHHHHcCCCHHHHHHHhhCChHHHHHHHHHHHHHHhccCCHHHHHHHHhh----c
Confidence 999999988643 22 34445667789999888877665321100 00000000 0000011111111110 0
Q ss_pred cChhHHHHHHHHHHHHH--hcCCCHHHHHHH---HHHHHHHhCChHHHHHHHHHHHHHhhHHh--cCCChHHHHHHHHHH
Q psy2281 198 QSPKKLLEVRTRLYELL--VHSIPVNVLFKY---LLEGLLANCDSDLKSKSIEMAAMFEHRIH--KGSKPIFHIEAYVAS 270 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~l~--~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~~l~~~i~~ 270 (287)
.....+.-+...+.+++ ..|.+...+..+ ....+.++++.......++.+.+...++. .+.|..+.|+..+.+
T Consensus 239 ~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L~~~~~iN~~L~l~~~l~~ 318 (325)
T PRK06871 239 LVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVNQELILLDGLTR 318 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccccCHHHHHHHHHHH
Confidence 00111222333333443 223222222222 22334456788888889999998888885 577778877777766
Q ss_pred HHH
Q psy2281 271 FMA 273 (287)
Q Consensus 271 ~~~ 273 (287)
...
T Consensus 319 ~~~ 321 (325)
T PRK06871 319 LVT 321 (325)
T ss_pred HHH
Confidence 543
No 78
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.6e-22 Score=167.72 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=151.7
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
..|++ ++|.|-||||||||+|++.+...++ -|++|+.|. ++......+| +.+..++|+..+++.-|+.+|+..
T Consensus 52 ~~GeI--fViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 52 EEGEI--FVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred cCCeE--EEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 56888 9999999999999999999988877 788898764 4555555554 459999999999999999999988
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccC
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVE 180 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~ 180 (287)
++. +...++++..++..+.++..|+ ++...+++.++|||..|| |+...+.++++|||+|++|++.+
T Consensus 130 GLe-------v~Gv~~~er~~~a~~~l~~VgL--~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 130 GLE-------VQGVPKAEREERALEALELVGL--EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred cee-------ecCCCHHHHHHHHHHHHHHcCc--hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 876 7889999999999999999998 788999999999998877 89999999999999999999999
Q ss_pred ccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 181 PDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 181 ~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.++.+.+.++.+. ++++|+.+++.++.+++.-+
T Consensus 201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 9999888888776 78999999999999998733
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.84 E-value=6.1e-20 Score=148.15 Aligned_cols=129 Identities=31% Similarity=0.493 Sum_probs=116.4
Q ss_pred HHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------------C----------------
Q psy2281 24 NHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------------P---------------- 62 (287)
Q Consensus 24 ~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------------~---------------- 62 (287)
+.|...+.+|+.|| ++|+||+|+||||+++.+++.+.+ +
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 45777888999988 999999999999999999988743 0
Q ss_pred -----------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHH
Q psy2281 63 -----------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIV 125 (287)
Q Consensus 63 -----------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~ 125 (287)
+|+|||+|.++..+++.|++.++.+++++.++++++...++.++++|||..+.|.+++.+++.
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH
Q psy2281 126 SVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA 158 (287)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~a 158 (287)
+++... | +++++++.+++.++|++|+|
T Consensus 162 ~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 162 QWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 888775 5 48999999999999999874
No 80
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=7.4e-19 Score=151.16 Aligned_cols=138 Identities=25% Similarity=0.353 Sum_probs=121.3
Q ss_pred cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------
Q psy2281 19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------------- 62 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------- 62 (287)
+....+.+...+.+|+.|| ++|+||+|+||++++.++++.+.+.
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 4567888999999999999 9999999999999999988665321
Q ss_pred ---------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceee
Q psy2281 63 ---------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR 115 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 115 (287)
+++||++|.|+..++++|++++|+++.++.||++++..+.++++++|||+.+.
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~ 168 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLE 168 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEee
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162 (287)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l 162 (287)
|.+++.++...++.. .|+ ++.....+..+++|...+|+..+
T Consensus 169 ~~~~~~~~~~~~L~~----~~~--~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 169 FKLPPAHEALAWLLA----QGV--SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCCcCHHHHHHHHHH----cCC--ChHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999888864 355 55556677899999998887655
No 81
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1.6e-19 Score=156.71 Aligned_cols=156 Identities=23% Similarity=0.325 Sum_probs=131.0
Q ss_pred CCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------- 62 (287)
++|++++|+.+.++.+..++. .+..+|++|+||||+|||++++++++.+..+
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLE 80 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcc
Confidence 478999999999998888885 3445669999999999999999999987533
Q ss_pred ---EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccc-eeecCCCC
Q psy2281 63 ---VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCL-CIRIPAPT 120 (287)
Q Consensus 63 ---~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~~~ 120 (287)
+++|||++.++...++.|+..++... +...++.+++....+.++++|||. .+.|.+++
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~ 160 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT 160 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCC
Confidence 89999999999887777777665322 124456666777788999999994 57899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
.+++.+++.+.+...++.+++++...+++.++|+.|.+...+..+.
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887654
No 82
>KOG1969|consensus
Probab=99.83 E-value=2.2e-19 Score=163.19 Aligned_cols=169 Identities=23% Similarity=0.350 Sum_probs=135.9
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHh--------------------------------cCCCCc--EEEeCCCCCcH
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK--------------------------------EGDFPH--LLFYGPSGAGK 48 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~--------------------------------~g~~~~--~~l~Gp~G~GK 48 (287)
+|++||+|+.|.++.+.+.+...+..|++ .++.+. ++|+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 79999999999999998776655555541 111222 78999999999
Q ss_pred HHHHHHHHHHhCCC------------------------------------EEEEeCCCCCCHHHHHHHHHHHHh------
Q psy2281 49 KTRIMALLKELYGP------------------------------------VIILNETDHLTREAQQALRRTMEK------ 86 (287)
Q Consensus 49 Ttl~~~l~~~~~~~------------------------------------~i~ide~d~l~~~~~~~l~~~i~~------ 86 (287)
||||+.+|+..+.. .+++||+|.-...+.+.++..+..
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~ 419 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQAT 419 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhh
Confidence 99999999987644 889999998766666666665541
Q ss_pred ccCC---------------cEEEEEeCCCCC-CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2281 87 YITT---------------CRLILCANSMSQ-VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ 150 (287)
Q Consensus 87 ~~~~---------------~~~i~~~~~~~~-l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 150 (287)
..+. ..+|++||+.-. -+.+++.-+.++.|.+++...+.++|+.+|.++|+..+..++..++++
T Consensus 420 Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el 499 (877)
T KOG1969|consen 420 GKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCEL 499 (877)
T ss_pred cCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence 1222 357888888642 345677777889999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhhcCCC
Q psy2281 151 SDRNLRRAILMCEASKVQQYP 171 (287)
Q Consensus 151 s~G~~r~al~~l~~~~~~dep 171 (287)
+.+|+|.++|.+|.+....+.
T Consensus 500 ~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 500 TQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred hcchHHHHHHHHHHHHHhccc
Confidence 999999999999999887654
No 83
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=7e-20 Score=169.71 Aligned_cols=168 Identities=26% Similarity=0.364 Sum_probs=127.0
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-----EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-----LLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-----~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
.+|++||||+++++++++++.+..+..++.....+. ++|+||+||||||+++++++.+...
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 479999999999999999999999998886543322 8999999999999999998765310
Q ss_pred ----------------------------------------------EEEEeCCCCCCHHHHHHHHHHHH-hc--cCCcEE
Q psy2281 63 ----------------------------------------------VIILNETDHLTREAQQALRRTME-KY--ITTCRL 93 (287)
Q Consensus 63 ----------------------------------------------~i~ide~d~l~~~~~~~l~~~i~-~~--~~~~~~ 93 (287)
+|+|||++.+.......+...+. .. ...+.+
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pL 231 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPL 231 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceE
Confidence 88999998765433333333333 11 223457
Q ss_pred EEEeCCCCC---------------CcHHHhc--ccceeecCCCCHHHHHHHHHHHHHHhCCC------C-CHHHHHHHHH
Q psy2281 94 ILCANSMSQ---------------VIPAIRS--RCLCIRIPAPTHEEIVSVLTNICKKEGLT------I-PPEFALRLAQ 149 (287)
Q Consensus 94 i~~~~~~~~---------------l~~~l~s--r~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~-~~~~~~~l~~ 149 (287)
|+++|.... +.+++++ |+..+.|++++...+.+.|.++++.++.. + +++++..++.
T Consensus 232 I~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~ 311 (637)
T TIGR00602 232 VFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ 311 (637)
T ss_pred EEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH
Confidence 777663211 2267887 55679999999999999999999987432 2 3578899999
Q ss_pred HcCCcHHHHHHHHHHHhhcC
Q psy2281 150 QSDRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 150 ~s~G~~r~al~~l~~~~~~d 169 (287)
.++||+|.||+.++.++...
T Consensus 312 ~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 312 GCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred hCCChHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 84
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=1.8e-19 Score=166.19 Aligned_cols=165 Identities=24% Similarity=0.343 Sum_probs=137.9
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--------C-------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--------Y------------- 60 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--------~------------- 60 (287)
.+|.+||||++|++++|+....+.+...+.....+|++|+||+|||||++++++.... .
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~ 132 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTA 132 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccc
Confidence 4899999999999999999999988877766666679999999999999999985320 0
Q ss_pred -------------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHhc----------
Q psy2281 61 -------------------------------------------GPVIILNETDHLTREAQQALRRTMEKY---------- 87 (287)
Q Consensus 61 -------------------------------------------~~~i~ide~d~l~~~~~~~l~~~i~~~---------- 87 (287)
+.+++|||++.++...|+.|++.++.-
T Consensus 133 ~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~ 212 (531)
T TIGR02902 133 RFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN 212 (531)
T ss_pred cCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence 018999999999999999999888641
Q ss_pred ------------------cCCcEEEEEeC-CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2281 88 ------------------ITTCRLILCAN-SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148 (287)
Q Consensus 88 ------------------~~~~~~i~~~~-~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 148 (287)
+.+.+++.+++ .++.+.+++++||..+.|++++.+++..+++..+++.++.+++++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred ccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 12345665554 45779999999999999999999999999999999999999999999888
Q ss_pred HHcCCcHHHHHHHHHHHhh
Q psy2281 149 QQSDRNLRRAILMCEASKV 167 (287)
Q Consensus 149 ~~s~G~~r~al~~l~~~~~ 167 (287)
.++. +.|.+.+.++.+..
T Consensus 293 ~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 293 KYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred Hhhh-hHHHHHHHHHHHHH
Confidence 7765 78999999887653
No 85
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.1e-21 Score=157.37 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=154.4
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
.+..-+|.+.++..++..+++|++ +.|.||||+||||+.|.|.+.+.++ -|-+++.+. + ......+++.|.
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~i--~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~-~----~~~~~rIGyLPE 79 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGEI--FGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL-S----QEIKNRIGYLPE 79 (300)
T ss_pred cchhccCceeeecceeeeecCCeE--EEeecCCCCCccchHHHHhccCCccCceEEEcCcch-h----hhhhhhcccChh
Confidence 344556667778888888899999 9999999999999999999999876 777887652 2 223456888888
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
...+..-+++.+.+..-- +++.++..++.+.+...+++.++ .....+.+-++|.|+.|+ ++...|.
T Consensus 80 ERGLy~k~tv~dql~yla-------~LkGm~~~e~~~~~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLA-------ELKGMPKAEIQKKLQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hhccCccCcHHHHHHHHH-------HhcCCcHHHHHHHHHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 777776666665544322 26788999999999999998887 677788899999999988 7777899
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|||+|++|+.+.+.+.+.++++.+. ++++|.++.++++||+++.+
T Consensus 151 LlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence 99999999999999999999999999887 88999999999999999855
No 86
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=1.4e-17 Score=140.47 Aligned_cols=221 Identities=19% Similarity=0.228 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------------------------
Q psy2281 21 KQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------------------------- 62 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------- 62 (287)
...+.+...+++|+.|| ++|+||+|+||++++..++..+.+.
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 34578888899999999 9999999999999999998887541
Q ss_pred --------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHH
Q psy2281 63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVL 128 (287)
Q Consensus 63 --------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l 128 (287)
+++|+++|.++.+++++|++.+|+|++++.|+++++..+.++++++|||+.+.|+++
T Consensus 84 ~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~--------- 154 (290)
T PRK05917 84 KKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME--------- 154 (290)
T ss_pred HHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch---------
Confidence 999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHH--HHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccChhHHHHH
Q psy2281 129 TNICKKEGLTIPPEFALRLAQQSDRNLR--RAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEV 206 (287)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r--~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~ 206 (287)
+..+ ++++....++.+++|++. .+...++. .. + ......++-.+.++.- -..-+
T Consensus 155 ----~~~~--i~~~~~~~l~~~~~g~~~~~~~~~~l~~------~~---~-----~~~~~~re~~~~~L~~----ll~~~ 210 (290)
T PRK05917 155 ----EKTL--VSKEDIAYLIGYAQGKESVTEVGQIVKG------SA---D-----TDKQVLRDKTKAMLEV----LLQLF 210 (290)
T ss_pred ----hccC--CCHHHHHHHHHHhCCChhHHHHHHHHhc------ch---H-----HHHHHHHHHHHHHHHH----HHHHH
Confidence 1223 478888889999999885 22222211 00 0 0000011111111000 11112
Q ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHH
Q psy2281 207 RTRLYELLVHSIPVN-VLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277 (287)
Q Consensus 207 ~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~ 277 (287)
+|.+ ++..|.+.. .+..+....+.+ .+......+++.+.+...++..+++..+.++.++.++...+++
T Consensus 211 RD~l--~~~~~~~~~~l~~~d~~~~l~~-~~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~~~ 279 (290)
T PRK05917 211 RDRF--LLALKVPASALAYPDLLKEILT-LPVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLKNR 279 (290)
T ss_pred HHHH--HHHcCCchhhhccHHHHHHHHh-cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 2222 133444433 223333333322 2222256788889999999999999999999999999887765
No 87
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=7.1e-22 Score=162.77 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=152.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCA 97 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~ 97 (287)
.+.+.++..+.+|+. ++++|||||||||+++.+++.+.+. .|.+|+.+.-.......+++.++.++|++. .++..
T Consensus 18 ~~l~~v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 18 AALKDVSLEIEKGER--VLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred eeeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 344556666688988 9999999999999999999999877 778998774433445678888999998874 45555
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
++.+.+..+.. ..+.+.+++.+++..+++..|+ .+...+.+..+|||+.|| ++...|.++++||||
T Consensus 96 tV~~evafg~~-------n~g~~~~e~~~rv~~~l~~vgl--~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 96 TVEDEVAFGLE-------NLGLPREEIEERVAEALELVGL--EELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred cHHHHHhhchh-------hcCCCHHHHHHHHHHHHHHcCc--hhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 66677777666 4467777899999999999998 566778899999999999 777889999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+++|+.....+.+.+.++..+ |+.+|+.+.+..++++++.+-.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence 999999999999999999766 7799999999999999885533
No 88
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=3e-17 Score=141.11 Aligned_cols=137 Identities=18% Similarity=0.342 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------
Q psy2281 19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------------- 62 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------- 62 (287)
+....+.+...+.+|+.|| ++|.||.|+||+++++.+++.+.+.
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 3456778888899999999 9999999999999999999887532
Q ss_pred -----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC
Q psy2281 63 -----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~ 119 (287)
+++|+++|.|+..+.++|++++|+|++++.||++++..+.++++++|||+.+.|+++
T Consensus 88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163 (287)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~ 163 (287)
+.+++..++.. .|+ + ....+..+++|+..+|+..+.
T Consensus 168 ~~~~~~~~L~~----~~~--~--~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 168 STAQAMQWLKG----QGI--T--VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred CHHHHHHHHHH----cCC--c--hHHHHHHHcCCCHHHHHHHhC
Confidence 99999988864 354 2 235667899999998877653
No 89
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=7.3e-23 Score=164.73 Aligned_cols=198 Identities=17% Similarity=0.118 Sum_probs=159.4
Q ss_pred CCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCC
Q psy2281 13 LQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITT 90 (287)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~ 90 (287)
+..-+|.-.+++.++..++.|++ +.|+||||+||||+.+++.+.+.++ .|++++.|.-........+..+...+|+
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei--~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEI--VGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeE--EEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 33444544566677777789999 9999999999999999999999887 8888887643333333445567888999
Q ss_pred cEEEEEeCCCCCCcHHHhcccc---eeecCCC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHH
Q psy2281 91 CRLILCANSMSQVIPAIRSRCL---CIRIPAP--THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AIL 160 (287)
Q Consensus 91 ~~~i~~~~~~~~l~~~l~sr~~---~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~ 160 (287)
.+++...|+.+|+.-+...+.. .+..+.. ..++..+....+++..|+ ++.+.+...++|+|++|+ |++
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL--~~~a~~~A~~LsyG~qR~LEIArALa 165 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL--GELADRPAGNLSYGQQRRLEIARALA 165 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC--chhhcchhhcCChhHhHHHHHHHHHh
Confidence 9999999999998877654421 1222222 567888899999999998 777888888899999888 999
Q ss_pred HHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 161 ~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
..|+++++|||..++.+.....+.+.|.++.+. ++++|+++.+..++|+++.+-
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~ 224 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN 224 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc
Confidence 999999999999999998888899999999875 679999999999999998663
No 90
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.9e-23 Score=162.61 Aligned_cols=194 Identities=17% Similarity=0.183 Sum_probs=154.7
Q ss_pred CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
.++.+.++...++..++..+++|++ +.+.||||+||||....+.+...++ -|++|+.|.-.-.--..-+..+++.+
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEi--VGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEI--VGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcE--EEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccc
Confidence 4555666666777788888899999 9999999999999999999988877 89999888532222223345689999
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
|.+.++--.++.+|+...+.-| .+.....+....+...++..++ ..-..+.-..+|||+.|| |+...|
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~-----~~d~~~~~~~~~l~~LL~ef~i--~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIR-----EKDLKKAERKEELDALLEEFHI--THLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhh-----hcchhHHHHHHHHHHHHHHhch--HHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 9998888888888887665522 2233344666678888888777 556666677899999998 888999
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+.+++||||++.|+....++.+++..+.+. ++..|+..+...++|+.|-+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE
Confidence 999999999999999999999999999877 66889999999999998844
No 91
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=5.4e-22 Score=170.04 Aligned_cols=187 Identities=18% Similarity=0.122 Sum_probs=151.5
Q ss_pred CCCCccC-cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 12 NLQKLDF-HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 12 ~~~~~~~-~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
++...++ ...+++.++..+++|++ ++|.||||+||||+++++++...+. .|.+++.+.... ...+++.+++++
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~~~~igy~~ 84 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKVRRRIGYVP 84 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHHHhheEEEc
Confidence 4444555 35667778888899999 9999999999999999999999876 788888764432 445677899999
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
++..+....|..+++...-. +...+.+...+.+.++++..++ ++...+.+..+|+|+.|| |+...|
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~-------l~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 85 QEPSLYPELTVRENLEFFAR-------LYGLSKEEAEERIEELLELFGL--EDKANKKVRTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred cCCCCCccccHHHHHHHHHH-------HhCCChhHHHHHHHHHHHHcCC--chhhCcchhhcCHHHHHHHHHHHHHhcCC
Confidence 99888888888887665433 4444445666788888888898 444467789999998888 777778
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~ 211 (287)
.++++|||++++|+.....+.+.+.++.++ ++++|..+++..+||++.
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 999999999999999999999999999875 679999999999999776
No 92
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.3e-21 Score=149.71 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=145.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..++.|++ +.+.||||+||||+++.|+..+.|+ .+.+|++|.... ....++.++-.+....+.--.|.
T Consensus 17 AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~--p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 17 AVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD--PSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred hhhheeEEeccceE--EEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC--hHHHhhhcceecCCcChhhhhhH
Confidence 55666666789999 9999999999999999999999888 899999985432 23456666665555555555556
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..--+ +..++..++.+++.+..+..++ .+...++..++|.|..++ |+...|+++++|||+++
T Consensus 93 rEnl~~Fa~-------L~~l~~~~~kari~~l~k~l~l--~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sG 163 (245)
T COG4555 93 RENLKYFAR-------LNGLSRKEIKARIAELSKRLQL--LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163 (245)
T ss_pred HHHHHHHHH-------HhhhhhhHHHHHHHHHHHHhCh--HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCC
Confidence 666544222 5678888999999999988888 678889999999998777 88888999999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|.+.+++.+||++..+
T Consensus 164 LDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivl 206 (245)
T COG4555 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL 206 (245)
T ss_pred ccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE
Confidence 9998888888888888764 88999999999999998744
No 93
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=3.4e-17 Score=142.08 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=129.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy2281 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142 (287)
Q Consensus 63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 142 (287)
+++||++|.|+..+.++|++.+|++++++.|+++++.++.++++++|||+.+.|++++.+++..++... ++ ++.
T Consensus 135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~ 208 (342)
T PRK06964 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA 208 (342)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH
Confidence 889999999999999999999999999999999999999999999999999999999999999888763 44 332
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHh--hcCCCcccccCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHh--cCC
Q psy2281 143 FALRLAQQSDRNLRRAILMCEASK--VQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLV--HSI 218 (287)
Q Consensus 143 ~~~~l~~~s~G~~r~al~~l~~~~--~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~--~~~ 218 (287)
+.+..+++|...+|+..+..-. ....-...+.......+. .+.+.+-.......+.-+...+.+++. .|.
T Consensus 209 --~~~l~~~~Gsp~~Al~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~ 282 (342)
T PRK06964 209 --DALLAEAGGAPLAALALASDENRPLRDWTLGQLAAGAACDAF----ACAETLQKLPVPAVLGWLQRWLYDLLAQRLAG 282 (342)
T ss_pred --HHHHHHcCCCHHHHHHHHCCChHHHHHHHHHHHhccCchhHH----HHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3356789999988876652100 000000000000111111 222222111111122223333445432 232
Q ss_pred CHHHHHH---HHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 219 PVNVLFK---YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 219 ~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
++ .+.. +....+.+.++...+...++.+.+....+..+.+..+.+|.++.++...
T Consensus 283 ~~-~~~~d~~~~l~~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~ 340 (342)
T PRK06964 283 AP-RYFPAQRAALARCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred Cc-eecHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHH
Confidence 22 2211 2333344567777788888888888888889999999999999877543
No 94
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.81 E-value=2.4e-19 Score=140.66 Aligned_cols=103 Identities=45% Similarity=0.675 Sum_probs=88.5
Q ss_pred CcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------------
Q psy2281 18 FHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------------------------- 62 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------- 62 (287)
||+.+.+.|...+.+|+.|| ++|+||+|+||+++++++++.+.+.
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 68889999999999999999 8999999999999999999988643
Q ss_pred ------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCC
Q psy2281 63 ------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPA 118 (287)
Q Consensus 63 ------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 118 (287)
+++||++|.++.+++++|++.||+++.++.|+++++..++++++++|||+.++|++
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy2281 119 PT 120 (287)
Q Consensus 119 ~~ 120 (287)
++
T Consensus 161 ls 162 (162)
T PF13177_consen 161 LS 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 53
No 95
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.80 E-value=1.9e-18 Score=157.51 Aligned_cols=166 Identities=28% Similarity=0.445 Sum_probs=123.9
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhc---CCCC--cEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE---GDFP--HLLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
.+|+|||+|++++++..++..++.++.|++. +..+ .++|+||+||||||++++|++++...
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4899999999999999999999999999854 2221 27899999999999999999998644
Q ss_pred ------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhc--cCCc-
Q psy2281 63 ------------------------------------------------VIILNETDHLTREAQQALRRTMEKY--ITTC- 91 (287)
Q Consensus 63 ------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~--~~~~- 91 (287)
+|+|+|.+.+.......|+..+..+ ...+
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~ 166 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCL 166 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCC
Confidence 8999998875544334444444332 1223
Q ss_pred EEEEEeCCCC-----------------CCcHHHhcc--cceeecCCCCHHHHHHHHHHHHHHh-----CC-CCC--HHHH
Q psy2281 92 RLILCANSMS-----------------QVIPAIRSR--CLCIRIPAPTHEEIVSVLTNICKKE-----GL-TIP--PEFA 144 (287)
Q Consensus 92 ~~i~~~~~~~-----------------~l~~~l~sr--~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~~~--~~~~ 144 (287)
++|++.+..+ -+.+.+... +..+.|++....-+.+.|.+++..+ +. ..+ ...+
T Consensus 167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l 246 (519)
T PF03215_consen 167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVL 246 (519)
T ss_pred CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHH
Confidence 4555544211 123345443 4679999999999999999999988 32 222 3458
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhh
Q psy2281 145 LRLAQQSDRNLRRAILMCEASKV 167 (287)
Q Consensus 145 ~~l~~~s~G~~r~al~~l~~~~~ 167 (287)
+.+++.|+||+|.|++.+|.++.
T Consensus 247 ~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 247 DSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhcCchHHHHHHHHHHHhc
Confidence 89999999999999999999998
No 96
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.80 E-value=9.1e-21 Score=165.45 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=145.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++...++ .|.+|+.+. ++......+++.+.+++|+..++...
T Consensus 20 ~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 45566666789999 9999999999999999999988766 788887653 23333344566788888887776666
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..++. ....+..+..+.+.+.++..|+ ++....++.++|+|+.|| |+...|+++++|||+
T Consensus 98 tv~eni~~~~~-------~~~~~~~~~~~~v~e~l~~vgL--~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 98 TVFGNVALPLE-------LDNTPKDEIKRKVTELLALVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 77777766543 2334566777788888888888 566778889999999988 788889999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|+.....+.+.+.++.++ ++++|+.+.+.+++|++..+
T Consensus 169 s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 169 SALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999998764 77999999999999988744
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.79 E-value=6.8e-18 Score=140.61 Aligned_cols=155 Identities=15% Similarity=0.257 Sum_probs=122.7
Q ss_pred CCCCcc--CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------C
Q psy2281 12 NLQKLD--FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------P 62 (287)
Q Consensus 12 ~~~~~~--~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------~ 62 (287)
+|++++ .+..+...+..+......++++|+||+|||||||++++++.... +
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d 99 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLS 99 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCC
Confidence 567766 36677888888876555556999999999999999999876431 1
Q ss_pred EEEEeCCCCCCH--HHHHHHHHHHHhccC--CcEEEEEeCCCC----CCcHHHhccc---ceeecCCCCHHHHHHHHHHH
Q psy2281 63 VIILNETDHLTR--EAQQALRRTMEKYIT--TCRLILCANSMS----QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNI 131 (287)
Q Consensus 63 ~i~ide~d~l~~--~~~~~l~~~i~~~~~--~~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~ 131 (287)
+++|||++.+.. ..+..+...+....+ ...++++++.+. .+.+.++||+ .++.+.+|+.+++.+++++.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 789999998753 334555555554432 346777777653 2578999999 68999999999999999998
Q ss_pred HHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
+...|+.+++++.+++++.+.||.|.++..++.+.
T Consensus 180 a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 180 ARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 88889999999999999999999999998888754
No 98
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.79 E-value=1.1e-20 Score=155.80 Aligned_cols=180 Identities=18% Similarity=0.161 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+.- .......+++.+.+++++..++...
T Consensus 18 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 18 ALDNLNFHITKGEM--VFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 44556666688999 9999999999999999999987654 7778875421 1222233566788888887666555
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+.. +.....++..+.+...++..++ ++...+.+.++|+|+.|| |+...+.++++|||+
T Consensus 96 tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 166 (216)
T TIGR00960 96 TVYDNVAFPLR-------IIGVPPRDANERVSAALEKVGL--EGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT 166 (216)
T ss_pred cHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 66666654432 1223344555667778888887 555666778999999988 677778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
+++|......+.+.+.++.+. ++++|+.+.+..++++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 167 GNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLT 210 (216)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999998888888888653 7799999988888877653
No 99
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.9e-21 Score=159.68 Aligned_cols=180 Identities=13% Similarity=0.093 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+.+|++ +.+.||||+|||||++++++.+.+. .|.+.+.+.-.. +. ...++|+||...+- .+
T Consensus 18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~--~~--~~~IgYVPQ~~~~d--~~ 89 (254)
T COG1121 18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR--RK--RLRIGYVPQKSSVD--RS 89 (254)
T ss_pred eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc--cc--CCeEEEcCcccccC--CC
Confidence 467777777899999 9999999999999999999988766 566655432110 10 24588888865221 11
Q ss_pred CCCCCcHHHhc-ccce-eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 99 SMSQVIPAIRS-RCLC-IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 99 ~~~~l~~~l~s-r~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
-+-.+.+-+.. |... -.|..++.++ .+.+.+.++..|+ .+...+.+.++|||+.|| |+...|+++++|||
T Consensus 90 fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm--~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP 166 (254)
T COG1121 90 FPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGM--EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEP 166 (254)
T ss_pred CCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCc--hhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCC
Confidence 22222221111 1111 1245566666 7788889999998 678889999999999999 77888899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
+++.|+.+...+.+++.++.++ ++++||...+...+|++.
T Consensus 167 ~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE
Confidence 9999999999999999999886 779999999999999876
No 100
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.8e-20 Score=143.79 Aligned_cols=204 Identities=17% Similarity=0.129 Sum_probs=158.3
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC--------CCC----CCHHHH
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE--------TDH----LTREAQ 77 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide--------~d~----l~~~~~ 77 (287)
.+.+-+|..++.+-++...++|.. +.|+|.+|+||||+++|+.-...|. .|.+.+ .+- ......
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdV--isIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCE--EEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 344445666677777777788888 9999999999999999998776655 333332 111 123445
Q ss_pred HHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157 (287)
Q Consensus 78 ~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~ 157 (287)
+.++..++.++|+..+.-.++..+|++++-. ..-..++.+..++....+.+.|+ .+....+.+.+|||+.+|
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv------hVLg~~k~ea~e~Ae~~L~kVGi--~ek~~~YP~~LSGGQQQR 160 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPV------HVLGVSKAEAIERAEKYLAKVGI--AEKADAYPAHLSGGQQQR 160 (256)
T ss_pred HHHHHHhhHhhhhcchhHHHHHHHHHHhcch------HhhcCCHHHHHHHHHHHHHHhCc--hhhhhcCccccCchHHHH
Confidence 6778889999999988888888888776422 24467888999999999999998 677779999999999888
Q ss_pred -----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH----HhcCCCHHHHH
Q psy2281 158 -----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL----LVHSIPVNVLF 224 (287)
Q Consensus 158 -----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l----~~~~~~~~~i~ 224 (287)
|+...|.+.++|||++++|+...-.+...+.+++++ +++||.+.....+...+.-+ +..--+|++++
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 788889999999999999999888888899999987 77999999988888876633 22233666665
Q ss_pred H
Q psy2281 225 K 225 (287)
Q Consensus 225 ~ 225 (287)
.
T Consensus 241 ~ 241 (256)
T COG4598 241 G 241 (256)
T ss_pred c
Confidence 4
No 101
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=2.2e-21 Score=170.28 Aligned_cols=193 Identities=11% Similarity=0.126 Sum_probs=147.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC--HHHHHHH-HHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT--REAQQAL-RRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~--~~~~~~l-~~~i~~~~~~~~~i~~ 96 (287)
+++.++..+++|++ ++|.||||||||||+++|++...+. .|++|+.+... ......+ ++.+.+++|+..++..
T Consensus 8 ~l~~vs~~i~~Gei--~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 8 GVNDADLAIAKGEI--FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred eEEeeEEEEcCCCE--EEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 34455555688999 9999999999999999999998766 78888866432 2222122 4568888888777766
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+|+..... +...+.++..+.+.+.++..|+ +....+++.++|+|+.|| |+...+.++++|||
T Consensus 86 ~TV~eNi~~~~~-------~~~~~~~~~~~~~~~~l~~vgL--~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPE-------LLGWPEQERKEKALELLKLVGL--EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 677777755433 3345666777888888998888 567778899999999888 77788899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
++++|+.....+.+.+.++.+. ++++|+.+.+.+++|+++.+-.+.+ +++++..
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999888653 7899999999999998875533222 4555544
No 102
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.6e-21 Score=161.49 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-CC------EEEEeCCCCCC--HHHHHHHH-HHHHhccCC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-GP------VIILNETDHLT--REAQQALR-RTMEKYITT 90 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-~~------~i~ide~d~l~--~~~~~~l~-~~i~~~~~~ 90 (287)
.+++.++..+++|+. +.|+|.|||||||+++++.+.+. ++ -|++++.+.+. .+....+| +.+..++|+
T Consensus 19 ~av~~vs~~i~~GE~--lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 19 KAVDGVSFELKKGEI--LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEeceeEEEcCCcE--EEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 345666777789999 99999999999999999999987 32 67888876543 33222222 235566665
Q ss_pred cE--EEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHH
Q psy2281 91 CR--LILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILM 161 (287)
Q Consensus 91 ~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~ 161 (287)
+. +-+..+..+.+.+.++.. ... +.++..+.+.+.++..|+.-++ ....+..++|||+.|| |+..
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h------~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~ 170 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLH------GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL 170 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHh------hcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC
Confidence 42 222223333455555521 122 5677888999999999996333 4568899999999988 6666
Q ss_pred HHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhc
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVH 216 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 216 (287)
.|++++.||||+++|...+..+.++++++.++ +++|||...+.+++|+++.++.+
T Consensus 171 ~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 78999999999999999999999999999886 88999999999999999866543
No 103
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=7e-20 Score=138.14 Aligned_cols=196 Identities=17% Similarity=0.149 Sum_probs=159.1
Q ss_pred cCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC--CCC---CCHHHHHHH
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE--TDH---LTREAQQAL 80 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide--~d~---l~~~~~~~l 80 (287)
.|-+.++.++|...+...+......|+. +++.||+|+|||||+|.+.-..-+. .+.|-+ .|. .+..+...|
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~get--lvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGET--LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCE--EEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 4566778888888887788877788988 9999999999999999886655443 333433 222 234456678
Q ss_pred HHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---
Q psy2281 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR--- 157 (287)
Q Consensus 81 ~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~--- 157 (287)
++.++.+++...+.+..++.+|+.++-. +...+++++......++++...+ .+.+.++...+|||+.+|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~------kv~gl~~~qa~~~a~ellkrlrl--~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPC------RVLGLSKDQALARAEKLLKRLRL--KPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhH------HHhCCCHHHHHHHHHHHHHHhcc--ccccccCceecccchhhhHHH
Confidence 9999999999999999999999877432 25678888888888889888777 788889999999999887
Q ss_pred --HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 158 --AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 158 --al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|+++.|.++++|||+.++|+.....+.++|+++... ++++|..+...+...++.-+
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvym 214 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEee
Confidence 888999999999999999999988999999999865 78999999999888876533
No 104
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.3e-20 Score=165.76 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=148.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|++ +.|.||||||||||+++|++...+. .|.+|+.+...... -.+.+.+++|+..++...+.
T Consensus 19 ~l~~vsl~i~~Ge~--~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 19 VIKGIDLDVADGEF--IVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---ADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEEEEeCCccccCCCCH
Confidence 44556666688998 9999999999999999999988766 78888865322111 12568888888888777788
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..+++ ....+..+....+.+.++..++ ++...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 94 ~eNi~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 94 RENMAYGLK-------IRGMPKAEIEERVAEAARILEL--EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred HHHHHhHHh-------hcCCCHHHHHHHHHHHHHHcCC--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 888877654 2345666777788888888888 667778889999999998 77788999999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
+|......+.+.+.++.++ ++++|+..++..++|++..+-.+.+ +++++.+
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999888888888764 7899999999999998875533222 4555544
No 105
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.6e-20 Score=144.73 Aligned_cols=175 Identities=16% Similarity=0.139 Sum_probs=145.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|+. +++.|||||||||+++.+++...+. .|-+++...-.+.+. =+-++|+..+++..|
T Consensus 19 ~~le~vsL~ia~ge~--vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae------rgvVFQ~~~LlPWl~ 90 (259)
T COG4525 19 SALEDVSLTIASGEL--VVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE------RGVVFQNEALLPWLN 90 (259)
T ss_pred hhhhccceeecCCCE--EEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc------ceeEeccCccchhhH
Confidence 356777777789999 9999999999999999999998876 777776542222211 123567788888889
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+|+..+++ ....++.+..++..+.+...|+ .+...+++.++|||+.|| |+...|.++++|||+.
T Consensus 91 ~~dNvafgL~-------l~Gi~k~~R~~~a~q~l~~VgL--~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 91 VIDNVAFGLQ-------LRGIEKAQRREIAHQMLALVGL--EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred HHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHhCc--ccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 9999999998 6788999999999999999998 566689999999998777 8999999999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~ 212 (287)
++|..+++.+.+.+-++-+. +++||+.++..-+.+++..
T Consensus 162 AlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvv 205 (259)
T COG4525 162 ALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVV 205 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEE
Confidence 99999998888888777655 7799999999988887653
No 106
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.3e-21 Score=170.00 Aligned_cols=190 Identities=15% Similarity=0.134 Sum_probs=149.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+++|++ ++|.||||||||||+++|++...++ .|.+|+.+..... .-++.+.+++|+..++...+.
T Consensus 21 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 21 VIDNLNLTIKQGTM--VTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS---IQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCcccCCCCCH
Confidence 44556666688998 9999999999999999999998766 7888886532211 113568888888877777788
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..+++ +...+..+..+.+..+++..++ .+...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 96 ~eNi~~~l~-------~~~~~~~~~~~~v~~~l~~~gl--~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 96 GENVGYGLK-------MLGVPKEERKQRVKEALELVDL--AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred HHHHHHHHh-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 888877765 3345667778888889988888 566677789999999988 77788999999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFK 225 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~ 225 (287)
+|......+.+.+.++.++ ++++|+..++..++|++..+-.+. -+++++..
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999888764 789999999999999987553322 25565554
No 107
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=4.3e-16 Score=133.07 Aligned_cols=234 Identities=13% Similarity=0.186 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC----------------------C---------------
Q psy2281 21 KQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------------------P--------------- 62 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------------------~--------------- 62 (287)
.+++.+++.+++|+.+| |+|+|+.|+||+++++.+++.+.+ .
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 46788999999999999 889999999999999999888611 0
Q ss_pred ----------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHH
Q psy2281 63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132 (287)
Q Consensus 63 ----------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~ 132 (287)
+++||+++.++..++++|+++++++++++.++++++..+++.++++|||++++|.+++.+++..++...
T Consensus 83 ~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~- 161 (299)
T PRK07132 83 FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK- 161 (299)
T ss_pred cCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999889999999999999999999999998887652
Q ss_pred HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc-------CccCccHHHHHHHHHHHHHhccChhHHHH
Q psy2281 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ-------QIVEPDWKIYIRDTAKLIISEQSPKKLLE 205 (287)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d-------~~~~~~~~~~i~~l~~~i~~~~~~~~~~~ 205 (287)
++ +++....++..++| ..+|+..... +...... .... .....+. ..+.... -+....
T Consensus 162 ---~~--~~~~a~~~a~~~~~-~~~a~~~~~~-----~~~~~~~~~~~~l~~~~~-~~~~l~~-~~~~~~~---ke~~~~ 225 (299)
T PRK07132 162 ---NK--EKEYNWFYAYIFSN-FEQAEKYINK-----ESENLLKKFEEALNKSLK-EKYELIL-FLNKKLT---KENALF 225 (299)
T ss_pred ---CC--ChhHHHHHHHHcCC-HHHHHHHHhc-----CCHHHHHHHHHHHHHhhh-hHHHHHH-HHHhhcC---hhhHHH
Confidence 44 77777788888886 8888876432 1110000 0000 0011111 1111111 111111
Q ss_pred HHHH----HHHHH--hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 206 VRTR----LYELL--VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 206 ~~~~----~~~l~--~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
+.+. ..+++ ..+.+.+.+... .+.+.+ .++. ..+++.+.+...++..++|..+++|.++.++...+
T Consensus 226 ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~s~---~~li~~i~~~~~~L~~N~N~~l~~e~lll~l~e~~ 298 (299)
T PRK07132 226 LLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKIEF---FELITIIDEFLNSLETNENFNLQKQAFLVKIYEIY 298 (299)
T ss_pred HHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 1111 11222 223344333333 222222 1222 23478888999999999999999999999987654
No 108
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=2.6e-16 Score=133.27 Aligned_cols=135 Identities=21% Similarity=0.342 Sum_probs=113.0
Q ss_pred CcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------------
Q psy2281 18 FHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------------------------- 62 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------- 62 (287)
.++.+++.+...+.+|+.+| ++|+|| .||+++++.++..+.+.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 35678899999999999999 999996 68999999999877532
Q ss_pred -----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC
Q psy2281 63 -----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP 119 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~ 119 (287)
+++||++|.|+..+.++|++.+|+|++++.||++++..+.++++++|||+.+.|++
T Consensus 84 I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~- 162 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK- 162 (290)
T ss_pred CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-
Confidence 99999999999999999999999999999999999999999999999999999976
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162 (287)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l 162 (287)
+.+++.+++ ...|+ +....+.++..++ +..+|+...
T Consensus 163 ~~~~~~~~L----~~~g~--~~~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 163 NEAYLIQLL----EQKGL--LKTQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred cHHHHHHHH----HHcCC--ChHHHHHHHHHCC-CHHHHHHHh
Confidence 655555554 45676 5555666666665 688887765
No 109
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=2.3e-20 Score=167.57 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC-CCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH-LTREAQQALRRTMEKYITTCR--LIL 95 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~-l~~~~~~~l~~~i~~~~~~~~--~i~ 95 (287)
.+++.++..+.+|+. +.|+|+|||||||+++++++...++ .+++++.+. ++......+++.+..++|++. +-+
T Consensus 305 ~Av~~VSf~l~~GE~--lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 305 KAVDDVSFDLREGET--LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeEecCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 446666777789999 9999999999999999999998876 788887661 233334556677777777653 233
Q ss_pred EeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
..++.+.+.+++. +... ...+..+++...++..++. .+...+++.++|||+.+| |+...|+++++|
T Consensus 383 r~tV~~~i~epL~-------~~~~~~~~~~~~rv~~ll~~VgL~-~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~D 454 (539)
T COG1123 383 RMTVGDILAEPLR-------IHGGGSGAERRARVAELLELVGLP-PEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454 (539)
T ss_pred cccHHHHHHhHHh-------hhcccchHHHHHHHHHHHHHcCCC-HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEec
Confidence 3344444555655 3332 3567777888889999985 335788999999999988 888889999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH-----HhcCCCHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL-----LVHSIPVNVLFK 225 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~~ 225 (287)
||++.+|+.....+.+++.++.++ ++++||...+..+||++..+ ...| +.+.+++
T Consensus 455 Ep~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G-~~~~v~~ 519 (539)
T COG1123 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG-PTEKVFE 519 (539)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC-CHHHHhc
Confidence 999999999999999999999887 88999999999999998844 3344 6666654
No 110
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.77 E-value=5.9e-21 Score=165.04 Aligned_cols=183 Identities=15% Similarity=0.048 Sum_probs=139.9
Q ss_pred CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
+...+++.++..+++|++ +.|.||||+|||||+++|++.+.++ .|.+++.+..... ...++.+++++++..++.
T Consensus 18 ~~~~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~--~~~~~~ig~v~q~~~~~~ 93 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA--RHARQRVGVVPQFDNLDP 93 (306)
T ss_pred CCeEEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch--HHHHhcEEEEeccCcCCC
Confidence 333456677777789999 9999999999999999999988766 7788887643221 234667888888776655
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++...-+ +...+..+....+..+++..++ .+...+.+..+|+|+.|| |+...|+++++||
T Consensus 94 ~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 94 DFTVRENLLVFGR-------YFGLSAAAARALVPPLLEFAKL--ENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred CCcHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5555555543211 2234455666677788887777 566677788999999888 7777789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|+.....+.+.+.++.+. ++++|+...+..+||+++.+
T Consensus 165 Pt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999999999998654 77999999999999988744
No 111
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.77 E-value=1.1e-20 Score=163.35 Aligned_cols=179 Identities=16% Similarity=0.108 Sum_probs=135.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.+++.+... . ...+++.+.+++++..++...+.
T Consensus 8 ~l~~vs~~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 8 AVDGVNFKVREGEV--FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-E-PRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-C-HHHHHhhcEEecCCCCCCCCCcH
Confidence 44556666688999 9999999999999999999988765 77788765322 1 12345668888877665554455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+..+..+.+...++..++ ++...+.+.++|+|+.|| |+...|.++++|||+++
T Consensus 84 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 84 RENLEMMGR-------LYGLPKDEAEERAEELLELFEL--GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 555433221 2234445556677788888887 556677788999999888 66777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+.....+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9999999999999888654 78999999999999988744
No 112
>KOG1970|consensus
Probab=99.77 E-value=1.1e-17 Score=147.93 Aligned_cols=167 Identities=26% Similarity=0.380 Sum_probs=123.5
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~------------ 62 (287)
.+|+|||+|++.+++..++..+..++.|++ ....++ ++|+||+||||||.++.|++++...
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~ 149 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKE 149 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccc
Confidence 379999999999999999999999998886 444444 8999999999999999999998754
Q ss_pred -----------------------------------------------EEEEeCCCCCCHH-HHHHHHHHHHhc---cCCc
Q psy2281 63 -----------------------------------------------VIILNETDHLTRE-AQQALRRTMEKY---ITTC 91 (287)
Q Consensus 63 -----------------------------------------------~i~ide~d~l~~~-~~~~l~~~i~~~---~~~~ 91 (287)
+|+|||....... ....++..+..+ ...+
T Consensus 150 ~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~P 229 (634)
T KOG1970|consen 150 PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCP 229 (634)
T ss_pred cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCc
Confidence 7999998765433 333333333332 2233
Q ss_pred EEEEEeCCCC--C------CcHHH--hcccceeecCCCCHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHcCCcH
Q psy2281 92 RLILCANSMS--Q------VIPAI--RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP------PEFALRLAQQSDRNL 155 (287)
Q Consensus 92 ~~i~~~~~~~--~------l~~~l--~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~l~~~s~G~~ 155 (287)
.+++++.... + ....+ ..|...+.|.+....-+.+.+..+|..++...+ ......++.-++||+
T Consensus 230 lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDI 309 (634)
T KOG1970|consen 230 LIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDI 309 (634)
T ss_pred EEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccH
Confidence 3333333221 1 22233 334567999999999999999999999876555 456788899999999
Q ss_pred HHHHHHHHHHhhc
Q psy2281 156 RRAILMCEASKVQ 168 (287)
Q Consensus 156 r~al~~l~~~~~~ 168 (287)
|.|++.+|.....
T Consensus 310 RsAInsLQlsssk 322 (634)
T KOG1970|consen 310 RSAINSLQLSSSK 322 (634)
T ss_pred HHHHhHhhhhccc
Confidence 9999999987543
No 113
>PRK06893 DNA replication initiation factor; Validated
Probab=99.76 E-value=3.5e-17 Score=135.87 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=117.8
Q ss_pred CCCCCCCccCcHHH--HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------
Q psy2281 9 RPNNLQKLDFHCKQ--ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------------- 61 (287)
Q Consensus 9 ~p~~~~~~~~~~~~--~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------- 61 (287)
++.+|++++++... ...+.........|.++|+||+|+|||||++++++....
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 90 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLE 90 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcc
Confidence 46789999975533 223333333333344899999999999999999977521
Q ss_pred --CEEEEeCCCCCC--HHHHHHHHHHHHhccCC-cEE-EEEeCCCCC----CcHHHhcccc---eeecCCCCHHHHHHHH
Q psy2281 62 --PVIILNETDHLT--REAQQALRRTMEKYITT-CRL-ILCANSMSQ----VIPAIRSRCL---CIRIPAPTHEEIVSVL 128 (287)
Q Consensus 62 --~~i~ide~d~l~--~~~~~~l~~~i~~~~~~-~~~-i~~~~~~~~----l~~~l~sr~~---~~~~~~~~~~~~~~~l 128 (287)
+++++||++.+. ...+..+...+....++ ..+ +++++..+. ..+.++||+. ++++++|+.++..+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 189999999764 23344566666655433 333 444554332 4578999985 7899999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 129 TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
++.+...++.+++++.+++++.+.||+|.++..+..+.
T Consensus 171 ~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 171 QRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888763
No 114
>PRK06620 hypothetical protein; Validated
Probab=99.76 E-value=4.1e-17 Score=133.61 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=113.6
Q ss_pred CCCCccC---cHHHHHHHHHHHhc-CCC---CcEEEeCCCCCcHHHHHHHHHHHhCC----------------CEEEEeC
Q psy2281 12 NLQKLDF---HCKQANHLRNLLKE-GDF---PHLLFYGPSGAGKKTRIMALLKELYG----------------PVIILNE 68 (287)
Q Consensus 12 ~~~~~~~---~~~~~~~l~~~~~~-g~~---~~~~l~Gp~G~GKTtl~~~l~~~~~~----------------~~i~ide 68 (287)
+|++++. +..+...+..+.+. +.. ++++|+||+|+|||||++++++.... ++++|||
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDd 93 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIED 93 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEec
Confidence 3455443 55677788877752 222 33999999999999999998876431 1899999
Q ss_pred CCCCCHHHHHHHHHHHHhccCCc-EEEEEeCCCCC---CcHHHhcccc---eeecCCCCHHHHHHHHHHHHHHhCCCCCH
Q psy2281 69 TDHLTREAQQALRRTMEKYITTC-RLILCANSMSQ---VIPAIRSRCL---CIRIPAPTHEEIVSVLTNICKKEGLTIPP 141 (287)
Q Consensus 69 ~d~l~~~~~~~l~~~i~~~~~~~-~~i~~~~~~~~---l~~~l~sr~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 141 (287)
++.+.. ..+...+.....+. .++++++..+. + +.++||+. ++.+++|+.+++..++++.++..|+.+++
T Consensus 94 i~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 94 IENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred cccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 996532 34445544443333 45555544332 4 88999997 89999999999999999999988999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 142 EFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 142 ~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
++.+++++.+.||+|.++..++.+.
T Consensus 170 ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 170 QIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999999999988888754
No 115
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.76 E-value=2.7e-20 Score=163.54 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++.++..+..|++ +.|.||||||||||+++|++...++ .|.+|+.+..... ...+.+.+++|+..++...+..
T Consensus 20 l~~vs~~i~~Ge~--~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~---~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 20 LKDISLSVKKGEF--VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP---PQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCcccCCCCcHH
Confidence 3445555678888 9999999999999999999998765 7888875532211 1235688888988888878888
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+|+..+++ ....+..+..+.+.++++..++ ++...+.+.++|+|+.|| |+...|+++++|||++++
T Consensus 95 eNi~~~~~-------~~~~~~~~~~~~~~~~l~~l~L--~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 95 DNIAYGLK-------NRGMGRAEVAERVAELLDLVGL--PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred HHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 88877765 2345667778888899998888 666778899999999988 778889999999999999
Q ss_pred cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
|......+.+.+.++.++ ++++|+..++..++|++..+-.+.+ +++++.+
T Consensus 166 D~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 166 DARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999888765 7899999999999998875533222 5565554
No 116
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.76 E-value=3.1e-20 Score=152.94 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+++.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+. ........+++.+.+++++..++..
T Consensus 16 ~il~~is~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 16 AALHDVSLHIRKGEF--LFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred eeecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 355666677789999 9999999999999999999987654 677787543 2222223345667777777655544
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... +.........+.+...++..++ ++...+.+.++|+|+.|| |+...|.++++|||
T Consensus 94 ~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 94 RTVYENVALPLE-------VRGKKEREIQRRVGAALRQVGL--EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CcHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 455555543322 1123344555677788888887 455566778999999888 66667899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
++++|......+.+.+.++.++ ++++|+...+..++|+++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 9999999999999999888654 7799999999888887653
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=2.7e-17 Score=139.41 Aligned_cols=155 Identities=25% Similarity=0.336 Sum_probs=115.0
Q ss_pred CCCCccCcHHHHHHHHHHH----------hc-----CCCCcEEEeCCCCCcHHHHHHHHHHHhC-------C--------
Q psy2281 12 NLQKLDFHCKQANHLRNLL----------KE-----GDFPHLLFYGPSGAGKKTRIMALLKELY-------G-------- 61 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~----------~~-----g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------~-------- 61 (287)
.+++++|...+++.++.+. +. +..+|++|+|||||||||+++++++.+. +
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4677889888877776543 11 2345699999999999999999987641 0
Q ss_pred -----------------------CEEEEeCCCCCC--------HHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcH
Q psy2281 62 -----------------------PVIILNETDHLT--------REAQQALRRTMEKYITTCRLILCANSMS-----QVIP 105 (287)
Q Consensus 62 -----------------------~~i~ide~d~l~--------~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~ 105 (287)
.+++|||+|.+. .+.++.+++.++....+..+++++...+ .+.+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p 163 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNP 163 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcCh
Confidence 099999999875 3356777888887655555555543322 2678
Q ss_pred HHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----------cCCcHHHHHHHHHHHh
Q psy2281 106 AIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----------SDRNLRRAILMCEASK 166 (287)
Q Consensus 106 ~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----------s~G~~r~al~~l~~~~ 166 (287)
+++||| ..+.|++++.+++.++++..+...+..+++++...+.+. +.|+.|.+.+.++.+.
T Consensus 164 ~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 164 GLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAI 235 (261)
T ss_pred HHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 999999 469999999999999999999998888899988887543 3467777666666543
No 118
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.76 E-value=6.5e-20 Score=151.06 Aligned_cols=181 Identities=22% Similarity=0.243 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+. .+.......++.+.+++++..++...
T Consensus 16 ~l~~~sl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 16 ALDGINISISAGEF--VFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 44555555678888 9999999999999999999987654 677887543 22222234556677888776655544
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..... ....+.++..+.+...++..++ ++.....+.++|+|+.|+ |+...|+++++|||+
T Consensus 94 t~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 94 NVYENVAFALE-------VTGVPPREIRKRVPAALELVGL--SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 55555544322 1123444555677778888777 455556678999999888 777778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|+.....+.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 165 ~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999888889888653 77999998888877766533
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.5e-20 Score=154.17 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++.+.+. .|.+++.+... . ...+++.+.+++++..++...+.
T Consensus 15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~-~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 15 AVRGVSFRVRRGEI--FGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-E-PREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred eeeceeEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-C-hHHHhhcEEEecCCccccccCcH
Confidence 45566666788988 9999999999999999999987655 67777754321 1 12334556777777655444444
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+..+..+.+..+++..++ ++.....+.++|+|+.|| |+...|.++++|||+++
T Consensus 91 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 91 WENLYIHAR-------LYGVPGAERRERIDELLDFVGL--LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 444433222 2223444555667788888887 555567788999999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l 205 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAII 205 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998888888888654 77999999999988887654
No 120
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.75 E-value=1.3e-20 Score=155.61 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHH-HHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQ-QALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~-~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++.+.+. .|.+++.+.. ..... ...++.+.+++++..++..
T Consensus 19 il~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 19 ALKGVSLSIEKGEF--VAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred EEeeeEEEEcCCCE--EEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 45566666688999 9999999999999999999987655 6778875421 11111 1223456777776655444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... +......+..+.+...++..|+ ++...+.+.++|+|+.|+ |+...|.++++|||
T Consensus 97 ~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 97 LTALENVELPLL-------LAGVPKKERRERAEELLERVGL--GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred CcHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHcCC--chhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 444455433221 2223334455667778888887 555667788999999888 66667899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~ 212 (287)
++++|+.....+.+.+.++.++ ++++|+...+. .+|+++.
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEE
Confidence 9999999999999999998762 77999998876 7776543
No 121
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.75 E-value=5.1e-20 Score=162.66 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+..|++ ++|.||||||||||+++|++...+. .|.+|+.+...... -.+.+.+++|+..++...++
T Consensus 29 ~l~~vsl~i~~Ge~--~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 29 VISNLDLTINNGEF--LTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA---ENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred EEeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHCCEEEEecCcccCCCCCH
Confidence 34455566688998 9999999999999999999988765 78888865322111 12457888888888777788
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..+++ ....+..+..+.+...++..++ ++...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 104 ~eNi~~~l~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 104 FENVAFGLR-------MQKTPAAEITPRVMEALRMVQL--EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred HHHHHHHHh-------hcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 888877654 2234566677778888888887 667778889999999988 77778899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKY 226 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~ 226 (287)
+|......+.+.+.++.++ |+++|+..++..++|+++.+..+. -+++++...
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999988764 789999999999999887553322 255655543
No 122
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-19 Score=159.44 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=137.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+++.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+. ++......+++.+.+++++..++...
T Consensus 20 il~~vsl~i~~Gei--~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 20 ALNNVSLHIPAGEI--FGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 44556666688999 9999999999999999999988765 778887653 22232334456677777776655545
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+.. +...+..+..+.+...++..|+ ++...+.+.++|+|+.|| |+...|.++++|||+
T Consensus 98 tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 98 TVFDNVALPLE-------LAGTPKAEIKARVTELLELVGL--SDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 55566544432 2234455666677888888887 556667788999999988 667778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|+.....+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 169 s~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 169 SALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999988653 77999999999999987754
No 123
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=6.4e-19 Score=133.77 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
++..++..+..|+. ++|+||+||||||+.+++|....++ .+++.+-+. +.-...+++..+.+..|.+.++. -++
T Consensus 18 il~~isl~v~~Ge~--iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v-s~~~pea~Rq~VsY~~Q~paLfg-~tV 93 (223)
T COG4619 18 ILNNISLSVRAGEF--IAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV-STLKPEAYRQQVSYCAQTPALFG-DTV 93 (223)
T ss_pred eecceeeeecCCce--EEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccc-cccChHHHHHHHHHHHcCccccc-cch
Confidence 34555666688999 9999999999999999999998877 788887664 33335678888998888776555 478
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
.+|+..+-+-| -..++.+.... .++..++ ++. ..+.+.++|||+.++ -+...|+++++||+++
T Consensus 94 eDNlifP~~~r-----~rr~dr~aa~~----llar~~l--~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 94 EDNLIFPWQIR-----NRRPDRAAALD----LLARFAL--PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred hhccccchHHh-----ccCCChHHHHH----HHHHcCC--chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 88887775533 23445444443 3444555 444 446688999999988 3455678999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|+.+...++++|..++.. +-++|+.+...+..+++..+.
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec
Confidence 99999999999999998844 558999998887777765443
No 124
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=1.3e-19 Score=137.88 Aligned_cols=180 Identities=17% Similarity=0.152 Sum_probs=143.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC--CCCCHHHHHHHHH-HHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET--DHLTREAQQALRR-TMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~--d~l~~~~~~~l~~-~i~~~~~~~~~i~~ 96 (287)
+.+.+...++.|+. +.|+||+|+|||||+-.+++.-.++ .|.+.+. ..+.+++...++. .++.++|...+++.
T Consensus 25 IL~~V~L~v~~Ge~--vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 25 ILKGVELVVKRGET--VAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred EeecceEEecCCce--EEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 34555566688888 9999999999999999999987766 4555543 3466777777764 48889999999999
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+|+.-|+. +..-+..+.....+..++..|+ ......++.++|||+.|| |++.-|++++.|||
T Consensus 103 ltAlENV~lPle-------L~ge~~~~~~~~A~~lL~~vGL--g~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEP 173 (228)
T COG4181 103 LTALENVALPLE-------LRGESSADSRAGAKALLEAVGL--GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEP 173 (228)
T ss_pred chhhhhccchhh-------hcCCccccHHHHHHHHHHHhCc--ccccccCccccCchHHHHHHHHHHhcCCCCEEeccCC
Confidence 999999887765 4444455666777788888888 677888999999999988 77777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+..+|..+...+-++++.+..+ ++++|++....+ |++...+
T Consensus 174 TGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~ 219 (228)
T COG4181 174 TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRL 219 (228)
T ss_pred CCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeee
Confidence 9999999999999999999877 789999877776 4554433
No 125
>PRK08727 hypothetical protein; Validated
Probab=99.75 E-value=1.1e-16 Score=133.08 Aligned_cols=156 Identities=21% Similarity=0.308 Sum_probs=118.6
Q ss_pred CCCCCccCcH-HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------
Q psy2281 11 NNLQKLDFHC-KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~-~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------- 62 (287)
.+|+++++.+ .....+.........+.++|+||+|+|||+++.+++......
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~d 95 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRS 95 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCC
Confidence 3688887644 333443433322222239999999999999999997664311
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHhccC-CcEEEEEeCCCCC----CcHHHhcc---cceeecCCCCHHHHHHHHHHHH
Q psy2281 63 VIILNETDHLT--REAQQALRRTMEKYIT-TCRLILCANSMSQ----VIPAIRSR---CLCIRIPAPTHEEIVSVLTNIC 132 (287)
Q Consensus 63 ~i~ide~d~l~--~~~~~~l~~~i~~~~~-~~~~i~~~~~~~~----l~~~l~sr---~~~~~~~~~~~~~~~~~l~~~~ 132 (287)
+++|||++.+. ...+..+.+.+..... ...++++++.... +.+.++|| |..+.+++++.+++..++++.+
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 89999999875 3345566666665433 3457777776533 57899999 6789999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
...++.+++++..++++.++||.|.+++.++.+.
T Consensus 176 ~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 176 QRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred HHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999988888765
No 126
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.75 E-value=2.8e-20 Score=155.19 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+..........++.+.+.+++..++...+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 15 VVNGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred eeccceeEecCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 45666667788999 9999999999999999999987654 6777775422111111123346666666555444444
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... .......+....+...++..++ ++...+.+.++|+|+.|+ |+...|.++++|||+++
T Consensus 93 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 163 (232)
T cd03218 93 EENILAVLE-------IRGLSKKEREEKLEELLEEFHI--THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAG 163 (232)
T ss_pred HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 455433221 1123344455566777777777 555667788999999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+.+.+...+++++.+
T Consensus 164 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 206 (232)
T cd03218 164 VDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206 (232)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998888888888653 78999999999999987755
No 127
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.3e-19 Score=151.36 Aligned_cols=182 Identities=20% Similarity=0.194 Sum_probs=133.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+.. +......+++.+.+++++..++...
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 15 VLKGVDLDVRRGEI--LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 44555666688999 9999999999999999999988655 6778875532 2211234455677777776555444
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++...... ....+.++..+.+...++..++ ++...+.+.++|+|+.|| |+...++++++|||+
T Consensus 93 tv~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 93 TVFENVAFPLRE------HTRLSEEEIREIVLEKLEAVGL--RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred cHHHHHHHHHhh------ccCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 555555433210 1123455566677778888887 555667788999999988 666678999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 999999999999999988653 77999999999988887654
No 128
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.75 E-value=4.7e-20 Score=152.32 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+..|+. ++|.||||+|||||+++|++...+. .|.+++.+. ... ...+++.+.+++++..++...+.
T Consensus 20 il~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~-~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 20 AVDGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VKE-PAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEc-ccC-HHHHHhhEEEecCCcccCcCCCH
Confidence 45566666688988 9999999999999999999987654 677787543 221 22345667777777655544455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+..+....+.+.++..|+ ++...+.+.++|+|+.|+ |+...|.++++|||+++
T Consensus 96 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~ 166 (218)
T cd03266 96 RENLEYFAG-------LYGLKGDELTARLEELADRLGM--EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTG 166 (218)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcC
Confidence 555433221 2233455666677788888887 566677888999999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 209 (218)
T cd03266 167 LDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVL 209 (218)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999998888889888653 78999999888888876543
No 129
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.75 E-value=5.1e-20 Score=152.34 Aligned_cols=179 Identities=17% Similarity=0.109 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+.. .. ...+++.+.+++++..++...+.
T Consensus 17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~-~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 17 AVDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR-TD-RKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc-cc-hHHHhhhEEEecCcCCccccCCH
Confidence 45566666788998 9999999999999999999987655 6778876532 11 13345557777777655544455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+..+..+.+...++..++ ++.....+.++|+|+.|+ |+...+.++++|||+++
T Consensus 93 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 163 (220)
T cd03263 93 REHLRFYAR-------LKGLPKSEIKEEVELLLRVLGL--TDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163 (220)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 555433222 2223444555667777887777 455566788999999888 67777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 164 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 164 LDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIM 205 (220)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 9999988888888887653 77999999998888877644
No 130
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.74 E-value=1.4e-20 Score=164.44 Aligned_cols=180 Identities=17% Similarity=0.088 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.+++.+.... ....++.+++++++..++...+
T Consensus 55 ~~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 55 AVVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--ARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--hHHHhccEEEEeCCccCCCCCc
Confidence 345566666688999 9999999999999999999988766 778888664221 1234556777777765555445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++...-. +...+..+..+.+...++..++ ++...+.+..+|+|+.|+ |+...|+++++|||++
T Consensus 131 v~e~l~~~~~-------~~~~~~~~~~~~~~~ll~~~~L--~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 131 VRENLLVFGR-------YFGMSTREIEAVIPSLLEFARL--ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 5555432111 2223444555666677777777 566677788999999888 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il 245 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 245 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999999998754 78999999999999988744
No 131
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.74 E-value=3.8e-20 Score=162.57 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=145.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|++ +.|.||||||||||+++|++...+. .|.+|+.+..... ..++.+.+++|+..++...+.
T Consensus 17 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 17 VLNDISLDIPSGQM--VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH---ARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred EEEEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---HHHCCEEEEecCcccCCCCcH
Confidence 34455555678998 9999999999999999999987765 7888876532211 123457788888777766677
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..+++.+- ....++.++..+.+...++..++ ++...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 92 ~eni~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~ 166 (353)
T PRK10851 92 FDNIAFGLTVLP---RRERPNAAAIKAKVTQLLEMVQL--AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGA 166 (353)
T ss_pred HHHHHhhhhhcc---cccCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 777765543100 01134556677788888888887 566777889999999888 77778899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
+|......+.+.+.++.++ ++++|+...+..++|+++.|..+++ +++++..
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999988765 7899999999999998875533322 5565544
No 132
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.74 E-value=2.6e-20 Score=153.14 Aligned_cols=179 Identities=18% Similarity=0.151 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE-EEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL-ILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~-i~~~~ 98 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+... ......++.+.+++++..+ ++..+
T Consensus 16 il~~vs~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 16 ALDDISLTIKKGEF--VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK-LSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-CCHHHHHhhceEEecChhhhcCCCc
Confidence 45556666688988 9999999999999999999987654 67777754211 1122345567777776532 33334
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+..+....+...++..++ ++...+.+.++|+|+.|+ |+...++++++|||++
T Consensus 93 ~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 93 VEEEVAFGLE-------NLGLPEEEIEERVEEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4444433221 1123344455566777777777 455566778899999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
++|......+.+.+.++.++ ++++|+.+.+..++++++.
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 206 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIV 206 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999888763 7799999988888876543
No 133
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.74 E-value=1.4e-19 Score=139.05 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=132.3
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHH
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI 107 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l 107 (287)
+..|+. +.+.||||+|||||++.+++...+. .|.|++.|...... -.+-+...+|+..++-..++.+|+-.++
T Consensus 22 v~~ge~--vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 22 VPAGEI--VAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---AERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred ecCCcE--EEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---ccCChhhhhhccccchhhhhhhhhcccC
Confidence 467888 9999999999999999999998876 78888877532111 1133555667777888888888865443
Q ss_pred hcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCcc
Q psy2281 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPD 182 (287)
Q Consensus 108 ~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~ 182 (287)
.-- -+++. +-++.+..++.+.|+ .....+...++|||+.|| ++.-.+-++++|||++++|+..+..
T Consensus 97 ~P~------LkL~a-~~r~~v~~aa~~vGl--~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~e 167 (231)
T COG3840 97 SPG------LKLNA-EQREKVEAAAAQVGL--AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167 (231)
T ss_pred Ccc------cccCH-HHHHHHHHHHHHhCh--hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHH
Confidence 210 01333 445567778888888 677788889999999888 4445567788999999999999999
Q ss_pred HHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC
Q psy2281 183 WKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI 218 (287)
Q Consensus 183 ~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 218 (287)
+..++.++.++ ++++|+++++.++.+++.-+-.+.+
T Consensus 168 Ml~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri 208 (231)
T COG3840 168 MLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRI 208 (231)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEE
Confidence 99999999877 7899999999999998764433333
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=2.7e-16 Score=141.77 Aligned_cols=240 Identities=14% Similarity=0.142 Sum_probs=159.3
Q ss_pred CCCCcc-C--cHHHHHHHHHHHhc-----CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------
Q psy2281 12 NLQKLD-F--HCKQANHLRNLLKE-----GD-FPHLLFYGPSGAGKKTRIMALLKELYG--------------------- 61 (287)
Q Consensus 12 ~~~~~~-~--~~~~~~~l~~~~~~-----g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------------------- 61 (287)
+|++++ | +..+......+.+. |. .++++|+||+|+|||||++++++.+..
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l 188 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAI 188 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHH
Confidence 677776 3 23344566666531 22 234999999999999999999986521
Q ss_pred ---------------CEEEEeCCCCCCH--HHHHHHHHHHHhcc-CCcEEEEEeCCC----CCCcHHHhccc---ceeec
Q psy2281 62 ---------------PVIILNETDHLTR--EAQQALRRTMEKYI-TTCRLILCANSM----SQVIPAIRSRC---LCIRI 116 (287)
Q Consensus 62 ---------------~~i~ide~d~l~~--~~~~~l~~~i~~~~-~~~~~i~~~~~~----~~l~~~l~sr~---~~~~~ 116 (287)
++++|||++.+.. ..+..+...+.... ....++++++.. ..+.+.++||+ ..+.+
T Consensus 189 ~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l 268 (445)
T PRK12422 189 RSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPL 268 (445)
T ss_pred hcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEec
Confidence 0899999998753 34666776665432 344577776654 34678999999 47899
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh---cCCCcccccCccCccHHHHHHHHHHH
Q psy2281 117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV---QQYPFQIDQQIVEPDWKIYIRDTAKL 193 (287)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~---~dep~~~~d~~~~~~~~~~i~~l~~~ 193 (287)
.+|+.+++..++++.++..|+.++++++.+++....||+|+....+..+++ +.. +.+ .+.+. +.+.++.+.
T Consensus 269 ~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~-~~~-~~i~~----~~~~~~l~~ 342 (445)
T PRK12422 269 HPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKK-LSH-QLLYV----DDIKALLHD 342 (445)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhC-CCCCH----HHHHHHHHH
Confidence 999999999999999999999999999999999999999998888888752 211 111 01222 233344333
Q ss_pred HHhc-----cChhHHHHHHHHHH-----HHHhcCCCHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcC
Q psy2281 194 IISE-----QSPKKLLEVRTRLY-----ELLVHSIPVNV-LFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKG 257 (287)
Q Consensus 194 i~~~-----~~~~~~~~~~~~~~-----~l~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 257 (287)
++.. -+.+.+.+.....| ++....-+.+. ...++.+|+++++.+.+..++.+.++.-+..+.++
T Consensus 343 ~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~~R~~~i~~~Rqiamyl~r~~t~~s~~~IG~~fgrdHsTV~~a 417 (445)
T PRK12422 343 VLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVFSRDHSTVISS 417 (445)
T ss_pred hhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcCCCCcccccHHHHHHHHHHHhcCCCHHHHHHHhCCChHHHHHH
Confidence 3221 13344444444433 22222222222 24599999999998888988888887444444443
No 135
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.74 E-value=3.5e-20 Score=160.33 Aligned_cols=180 Identities=17% Similarity=0.085 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+.-. . ....++.+.+++++..++...+
T Consensus 18 ~~l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 18 VVVNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-R-ARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred EEEcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-c-HHHHhhcEEEEeccccCCcCCc
Confidence 355666777789999 9999999999999999999987655 67788765321 1 1234556777777765544444
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... +...+..+....+...++..++ ++...+.+.++|+|+.|| |+...|.++++|||++
T Consensus 94 v~e~l~~~~~-------~~~~~~~~~~~~~~~ll~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 94 VRENLLVFGR-------YFGMSTREIEAVIPSLLEFARL--ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4444432111 1223445555666777777776 566667788999999888 6667789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l 208 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999999888654 78999999999999987744
No 136
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.74 E-value=1.6e-16 Score=132.04 Aligned_cols=159 Identities=15% Similarity=0.269 Sum_probs=123.8
Q ss_pred cCCCCCCCccC--cHHHHHHHHHHHhcC-CCCcEEEeCCCCCcHHHHHHHHHHHhC-----------------------C
Q psy2281 8 YRPNNLQKLDF--HCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKELY-----------------------G 61 (287)
Q Consensus 8 ~~p~~~~~~~~--~~~~~~~l~~~~~~g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----------------------~ 61 (287)
-+|.+|+++++ +..+...++.+.... ..++++|+||+|+|||++++++++... +
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 91 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEA 91 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccC
Confidence 35677888773 456677777776532 223499999999999999999998751 1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEeCCCC---CCcHHHhccc---ceeecCCCCHHHHHHHHHHHHH
Q psy2281 62 PVIILNETDHLTREAQQALRRTMEKYITTCR--LILCANSMS---QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNICK 133 (287)
Q Consensus 62 ~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~~~~~---~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~~~ 133 (287)
++++|||++.++...+..+...++....... ++++++..+ .+.+.++||+ ..+.+++++.++....+.+.+.
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 1899999999888888888888876544433 444444322 3567788886 5789999999989999999998
Q ss_pred HhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 134 ~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
..++.+++++.+++++.+.|+.+.+...++.+.
T Consensus 172 ~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 172 ERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999888887754
No 137
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.1e-20 Score=152.44 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+++.++..+.+|+. ++|.||||+|||||+++|++.+.+. .|.+|+.+.. ........++.+.+++++..++...
T Consensus 20 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 20 ALKDVSLSVPKGEI--FGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 45566666788999 9999999999999999999988655 7788876532 1122223455677777776655444
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..... ....+..+....+...++..++ ++...+.+.++|+|+.|+ |+...+.++++|||+
T Consensus 98 t~~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 98 TVFENVALPLE-------IAGVPKAEIEERVLELLELVGL--EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 55555543322 1123344555667778888887 555566788999999888 666667899999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.++ ++++|+.+.+..++++++.+
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 214 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM 214 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999888653 77999999998888887654
No 138
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1e-19 Score=160.94 Aligned_cols=190 Identities=12% Similarity=0.130 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+..|++ ++|.||||||||||+++|++...++ .|.+|+.+.... ...++.+.+++|+..++...+.
T Consensus 34 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 34 AVDDVSLTIYKGEI--FALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV---PPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---CHHHCCEEEEeCCCccCCCCCH
Confidence 34445555678988 9999999999999999999998765 778887553211 1124568888888888887788
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..+++ ....+..+..+.+..+++..++ .+...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 109 ~eNi~~~l~-------~~~~~~~~~~~~v~~~l~~l~L--~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 109 EQNIAFGLK-------QDKLPKAEIASRVNEMLGLVHM--QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 888877665 2234566777888888888888 566677888999999988 77788999999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
+|......+.+.+.++.++ ++++|+..++..++|+++.+..+++ +++++..
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999888888888887664 7899999999999998875533222 5555544
No 139
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.2e-19 Score=146.61 Aligned_cols=177 Identities=14% Similarity=0.101 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++| . ++|.||||+|||||++++++.+.+. .|.+++.+. .... ..+++.+.+++++..++...+.
T Consensus 15 ~l~~vs~~i~~g-~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~-~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 15 ALDGVSLTLGPG-M--YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV-LKQP-QKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEcceeEEEcCC-c--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcc-ccch-HHHHhheEEecCCCcccccCCH
Confidence 344555556777 7 9999999999999999999987655 677787653 2211 3445667777777765554455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+.++..+.+...++..++ ++.....+.++|+|+.|| |+...|+++++|||+++
T Consensus 90 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 160 (211)
T cd03264 90 REFLDYIAW-------LKGIPSKEVKARVDEVLELVNL--GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160 (211)
T ss_pred HHHHHHHHH-------HhCCCHHHHHHHHHHHHHHCCC--HHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 555543322 2233444555667777888777 455556778999999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~ 201 (211)
T cd03264 161 LDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAV 201 (211)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE
Confidence 9999988888888887544 7799999988888777653
No 140
>PRK10908 cell division protein FtsE; Provisional
Probab=99.74 E-value=2.9e-19 Score=147.98 Aligned_cols=181 Identities=16% Similarity=0.159 Sum_probs=132.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+. ........+++.+.+.+++..+++..
T Consensus 17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 17 ALQGVTFHMRPGEM--AFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 44556666688988 9999999999999999999987654 677877542 22222233556778888877665555
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+.. +...+.++....+...++..++ .+...+.+.++|+|+.|+ |+...|.++++|||+
T Consensus 95 tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 95 TVYDNVAIPLI-------IAGASGDDIRRRVSAALDKVGL--LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred cHHHHHHhHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 55555543321 2233445555667777887777 455566778999999888 666778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 166 GNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999888888888888653 77999999998888876543
No 141
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.74 E-value=2.8e-16 Score=137.81 Aligned_cols=237 Identities=17% Similarity=0.221 Sum_probs=162.2
Q ss_pred CCCCccC---cHHHHHHHHHHHhc-C-CCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------
Q psy2281 12 NLQKLDF---HCKQANHLRNLLKE-G-DFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------ 62 (287)
Q Consensus 12 ~~~~~~~---~~~~~~~l~~~~~~-g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------ 62 (287)
+|++++. +..+......+.+. | ..++++|+||.|+|||+|++++++.....
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 4555543 33455555555543 2 34559999999999999999998776311
Q ss_pred -------------EEEEeCCCCCCH--HHHHHHHHHHHhccCCc-EEEEEeCCCC----CCcHHHhcccc---eeecCCC
Q psy2281 63 -------------VIILNETDHLTR--EAQQALRRTMEKYITTC-RLILCANSMS----QVIPAIRSRCL---CIRIPAP 119 (287)
Q Consensus 63 -------------~i~ide~d~l~~--~~~~~l~~~i~~~~~~~-~~i~~~~~~~----~l~~~l~sr~~---~~~~~~~ 119 (287)
+++||+++.+.. ..+..+...+.....+. .+++++...+ .+.+.++||+. .+.+.+|
T Consensus 165 ~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~P 244 (408)
T COG0593 165 NEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPP 244 (408)
T ss_pred hhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCC
Confidence 889999998764 34778888888776665 4566554443 36789999984 6889999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccC
Q psy2281 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199 (287)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~ 199 (287)
+.+....++.+.++..++.+++++..++++....++|.+...+.++..+..-... ..+...+.+.++++...--. -+
T Consensus 245 d~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~--~iTi~~v~e~L~~~~~~~~~-it 321 (408)
T COG0593 245 DDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKR--AITIDLVKEILKDLLRAGEK-IT 321 (408)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhhccccc-CC
Confidence 9999999999999999999999999999999999999966666655544321100 22333333333333222112 34
Q ss_pred hhHHHHHHHHHH-----HHHhcCCCHHHH-HHHHHHHHHHhCChHHHHHHHHHHHHHhh
Q psy2281 200 PKKLLEVRTRLY-----ELLVHSIPVNVL-FKYLLEGLLANCDSDLKSKSIEMAAMFEH 252 (287)
Q Consensus 200 ~~~~~~~~~~~~-----~l~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (287)
.+.+.+.....| ++...+-+.+.+ ..++.+|+++.+.+.+..++.+.++ .||
T Consensus 322 ie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg-rdH 379 (408)
T COG0593 322 IEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG-RDH 379 (408)
T ss_pred HHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHHHHHHccCcHHHHHHHhC-CCc
Confidence 555555555555 233322222222 4599999999999999999999888 544
No 142
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=5.4e-20 Score=151.44 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+.-... ..++.+.+++++..++...+.
T Consensus 15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 15 ALDDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP---PERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eecceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc---hhhccEEEEcCchhhccCCcH
Confidence 45666666788999 9999999999999999999987654 6777775421111 122345666666544433344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... ....+.....+.+...++..++ ++...+.+.++|+|+.|| |+...+.++++|||+++
T Consensus 90 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 90 AENIAFGLK-------LRGVPKAEIRARVRELLELVGL--EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred HHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 444432211 1123344555667777888777 555667788999999988 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 204 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVM 204 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 9999999999999888653 77999999888888876543
No 143
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.74 E-value=2.6e-19 Score=157.91 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=134.0
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC----CC--CCHHHHHHHH-HHHHhccCCcEEEEEeCCCC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET----DH--LTREAQQALR-RTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~----d~--l~~~~~~~l~-~~i~~~~~~~~~i~~~~~~~ 101 (287)
.+|++ +.|.||||+|||||+++|++.+.+. .|++|+. +. ++......++ +.+.+++|+..++...+..+
T Consensus 48 ~~Gei--~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 48 EEGEI--CVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred cCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 57888 9999999999999999999988765 7788863 21 2222223333 35788888877666566677
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
|+..++. +...+..+....+.+.++..|+ ++.....+.++|+|+.|| |+...|.++++|||++++|
T Consensus 126 Ni~~~~~-------~~g~~~~~~~~~a~e~le~vgL--~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 126 NVAFGLE-------MQGMPEAERRKRVDEQLELVGL--AQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred HHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 7765543 3345566667778888888888 566677888999999888 7778889999999999999
Q ss_pred CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+.....+.+.+.++.++ ++++|+.+.+.++++++..+
T Consensus 197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl 238 (382)
T TIGR03415 197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM 238 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999988764 78999999999999988744
No 144
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.73 E-value=3e-20 Score=152.97 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT-REAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+... .......++.+.+++++..++...+
T Consensus 15 ~l~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 15 VLKGIDLTVKKGEV--VVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eecCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 44555666688988 9999999999999999999987654 67788765321 1122334566777777765544344
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... .+...+.++..+.+...++..|+ ++...+.+.++|+|+.|+ |+...|+++++|||++
T Consensus 93 ~~e~l~~~~~------~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 164 (213)
T cd03262 93 VLENITLAPI------KVKGMSKAEAEERALELLEKVGL--ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164 (213)
T ss_pred HHHHHHhHHH------HhcCCCHHHHHHHHHHHHHHcCC--HhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4455433211 01123344555667778888777 555667788999999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
++|......+.+.+.++.+. ++++|+...+..++++++.
T Consensus 165 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~ 207 (213)
T cd03262 165 ALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF 207 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999988888888888654 6799999999888887653
No 145
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=2.6e-16 Score=142.36 Aligned_cols=243 Identities=13% Similarity=0.143 Sum_probs=159.5
Q ss_pred CCCCCCccC---cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhC---CC-------------------
Q psy2281 10 PNNLQKLDF---HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELY---GP------------------- 62 (287)
Q Consensus 10 p~~~~~~~~---~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~------------------- 62 (287)
+.+|++++. +..+......+.+. |. .++++|+||+|+|||+|++++++.+. +.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 457777764 22345555555543 33 34499999999999999999988542 11
Q ss_pred ------------------EEEEeCCCCCC--HHHHHHHHHHHHhccCCc-EEEEEeCCCC----CCcHHHhcccc---ee
Q psy2281 63 ------------------VIILNETDHLT--REAQQALRRTMEKYITTC-RLILCANSMS----QVIPAIRSRCL---CI 114 (287)
Q Consensus 63 ------------------~i~ide~d~l~--~~~~~~l~~~i~~~~~~~-~~i~~~~~~~----~l~~~l~sr~~---~~ 114 (287)
+++|||++.+. ...++.|...+....... .++++++..+ .+.+.++||+. ++
T Consensus 191 ~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~ 270 (450)
T PRK14087 191 QKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSI 270 (450)
T ss_pred HHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCcee
Confidence 89999999876 456777887777654443 4666666543 36678999984 68
Q ss_pred ecCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH
Q psy2281 115 RIPAPTHEEIVSVLTNICKKEGL--TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK 192 (287)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~ 192 (287)
.+.+|+.+++.+++++.++..|+ .+++++++++++.++||.|.+...+..+....--...-..+. .+.++++.+
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it----~~~v~~~l~ 346 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIIT----IEIVSDLFR 346 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHh
Confidence 89999999999999999998875 689999999999999999998888887764321100001122 223334333
Q ss_pred HHHhc----cChhHHHHHHHHHH-----HHHhcCCCHHH-HHHHHHHHHHHhCChHHHHHHHHHHH-HHhhHHhc
Q psy2281 193 LIISE----QSPKKLLEVRTRLY-----ELLVHSIPVNV-LFKYLLEGLLANCDSDLKSKSIEMAA-MFEHRIHK 256 (287)
Q Consensus 193 ~i~~~----~~~~~~~~~~~~~~-----~l~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 256 (287)
.+... -+.+.+.+.....| ++....-+.+. ...++.+|+++++.+.+..++...++ .-+..+.+
T Consensus 347 ~~~~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r~~t~~sl~~IG~~FggrdHsTV~~ 421 (450)
T PRK14087 347 DIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHTLAQIGEEFGGRDHTTVIN 421 (450)
T ss_pred hccccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHHHHcCCCHHHHHHHhCCCChHHHHH
Confidence 32211 13344444433333 22222122122 34599999999888888888888876 33333333
No 146
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3.9e-19 Score=146.01 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=125.5
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+|+.+. +. ..++.+.+++++..++...+..
T Consensus 16 l~~v~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~----~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 16 LDDISFSVEKGEI--FGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL-DI----AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCch-hH----HHHccEEEeccCCcCCcCCcHH
Confidence 3445555678888 9999999999999999999987654 778887652 21 2334456666665443333444
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++..... +...+..+..+.+.+.++..++ ++...+.+.++|+|+.|+ |+...++++++|||++++
T Consensus 89 e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 89 DQLVYLAQ-------LKGLKKEEARRRIDEWLERLEL--SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred HHHHHHHH-------HcCCChHHHHHHHHHHHHHcCC--hHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 44332211 1223344555677778888887 556667788999999888 566668899999999999
Q ss_pred cCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 160 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 201 (210)
T cd03269 160 DPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLL 201 (210)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence 999988888888887653 77999999988888876544
No 147
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2e-20 Score=165.49 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|++ ++|.||||||||||+++|++...++ .|.+++.+...... ..+.+.+++|+..++...+.
T Consensus 18 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 18 ISKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---hHCCEEEEeCCcccCCCCCH
Confidence 44556666688998 9999999999999999999988765 77788754321111 12457777777666655566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..++. ....+..+..+.+...++..++ ++...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 93 ~eni~~~~~-------~~~~~~~~~~~~~~~~l~~lgL--~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 93 AENMSFGLK-------LAGAKKEEINQRVNQVAEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred HHHHHhHHh-------hcCCCHHHHHHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 666655443 2234555666778888888887 555667788999999988 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl 207 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998888888888654 78999999999999988755
No 148
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.73 E-value=1.4e-19 Score=152.01 Aligned_cols=189 Identities=20% Similarity=0.189 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+.+.++..+.+|++ ++|.||||||||||+++|++...+. .|.+++.+. ........+++.+.+++++..++..
T Consensus 16 ~il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 16 QALKNINLNINPGEF--VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred ceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 356666777789999 9999999999999999999987654 777887542 1222223356667888887666554
Q ss_pred eCCCCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 97 ANSMSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.+..+++..+.......+ .+......+..+.+...++..++ +....+.+.++|+|+.|| |+...|+++++||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 171 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL--ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 555555533211100000 00011122334556677777777 455556678899999888 6667789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 99999999999999999888653 67999999998989987755
No 149
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.73 E-value=3.2e-19 Score=155.50 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCc--EEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTC--RLIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~--~~i~ 95 (287)
+++.++..+.+|++ +.|.||||||||||+++|++.+.+. .|.+|+.+. +.......+++.+.+++|++ .+..
T Consensus 36 ~l~~vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 36 AVDGVTLRLYEGET--LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred EEeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 45556666688999 9999999999999999999988654 778887653 22333334555677888775 3444
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..++... ....+.++..+.+...++..++. ++....++.++|+|+.|| |+...|.++++||
T Consensus 114 ~~tv~~~i~~~l~~~-----~~~~~~~~~~~~~~~~l~~vgl~-~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE 187 (331)
T PRK15079 114 RMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLL-PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 187 (331)
T ss_pred CCCHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHcCCC-hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 455556665554311 11346667777888888888872 234567788999999988 7777889999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
|++++|......+.+.+.++.++ ++++|+...+..++++++.|..
T Consensus 188 Pts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 188 PVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999998764 7899999999999998875533
No 150
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.7e-19 Score=158.07 Aligned_cols=172 Identities=12% Similarity=0.180 Sum_probs=130.4
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHH-HHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQAL-RRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l-~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
++|++ ++|.||||||||||+++|++.+.+. .|.+++.+. +.......+ ++.+.+++|+..++...+..+++..
T Consensus 52 ~~Gei--~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~ 129 (400)
T PRK10070 52 EEGEI--FVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF 129 (400)
T ss_pred cCCCE--EEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence 67888 9999999999999999999988765 778887653 222222222 2357777877666555566666654
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccC
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVE 180 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~ 180 (287)
+.. +...+.++..+.+.+.++..|+ ++...+.+.++|+|+.|| |+...|.++++|||++++|+...
T Consensus 130 ~~~-------~~~~~~~~~~~~~~e~L~~~gL--~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 130 GME-------LAGINAEERREKALDALRQVGL--ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred HHH-------hcCCCHHHHHHHHHHHHHHcCC--ChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 432 2234445566677788888888 566677788999999988 67777899999999999999999
Q ss_pred ccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 181 PDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 181 ~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
..+.+.+.++.++ ++++|+.+.+..++++++.+
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 9999999888653 78999999999999988744
No 151
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.73 E-value=3.1e-20 Score=163.37 Aligned_cols=190 Identities=16% Similarity=0.154 Sum_probs=146.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+++.++..+..|++ +.|.||||||||||+++|++...++ .|.+++.+..... ...+.+.+++|+..++...
T Consensus 20 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~---~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 20 VLDDLSLEIEAGEL--LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP---PHKRGLALLFQNYALFPHL 94 (362)
T ss_pred EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC---HHHCCEEEEECCcccCCCC
Confidence 34455555678888 9999999999999999999987643 5778875532111 1235578888888877777
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+|+..+++ ....+..+..+.+..+++..++ ++...+.+.++|+|+.|| |+...|+++++|||+
T Consensus 95 tv~enl~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 95 KVEDNVAFGLR-------AQKMPKADIAERVADALKLVGL--GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhcCC--CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 88888877665 2345666777788888888887 566778889999999888 777889999999999
Q ss_pred ccccCccCccHHHHHHHHHHH------HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL------IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~------i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
+++|......+.+.+.++.++ ++++|+..++..++|++..+-.+.+ +++++..
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999888763 7799999999999998875533222 5555544
No 152
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.73 E-value=5.1e-20 Score=151.56 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=126.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|++ ++|.||||+|||||++++++.+.+. .|.+|+.+...... ..+.+.+++++..++...+.
T Consensus 15 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 15 ALDDLNLDIADGEF--VVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---ccceEEEEecChhhccCCCH
Confidence 45556666688998 9999999999999999999987654 67788755211110 11345555665544333344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +.....++..+.+...++..|+ ++...+.+.++|+|+.|+ |+...|+++++|||+++
T Consensus 90 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 90 YDNIAFGLK-------LRKVPKDEIDERVREVAELLQI--EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 444433221 2223445566677778888887 455667778999999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+.....+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 204 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM 204 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 9999999999999888753 77999999888888876543
No 153
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.73 E-value=5.9e-20 Score=150.43 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHH-HHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTRE-AQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~-~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|+. +.|.||||+|||||++++++.+.+. .|.+++.+. +... .....++.+.++++...++..
T Consensus 13 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 13 ILDDLNLTIEKGKM--YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEeceEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 44555566678988 9999999999999999999987654 677887652 2221 122344557777776655444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... .......+..+.+...++..|+ ++...+.+.++|+|+.|+ |+...|+++++|||
T Consensus 91 ~t~~e~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 91 ETVEENLDLGLK-------YKKLSKKEKREKKKEALEKVGL--NLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred CcHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCc--hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455555443221 1123344555667778888787 555667788999999888 77777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTR 209 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~ 209 (287)
++++|......+.+.+.++.+. ++++|+.... ..+++
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~ 202 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADR 202 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCE
Confidence 9999999998888888888653 6788988644 34443
No 154
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=7.8e-20 Score=155.57 Aligned_cols=181 Identities=13% Similarity=0.158 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC--HHHHHHH-HHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT--REAQQAL-RRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~--~~~~~~l-~~~i~~~~~~~~~i~~ 96 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+|+.+.-. ......+ .+.+.+++++..++..
T Consensus 39 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 39 GVNDVSLDVREGEI--FVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred EeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 34455555578888 9999999999999999999988654 67788754321 1111111 2346666776655444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... +...+..+..+.+...++..++ .+...+.+.++|+|+.|+ |+...|.++++|||
T Consensus 117 ~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 117 RTVLENVAFGLE-------VQGVPRAEREERAAEALELVGL--EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred CcHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 455555543322 2223344455667778888787 555667778899999888 67777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM 234 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999999888643 78999999999999987754
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=5e-16 Score=141.43 Aligned_cols=229 Identities=16% Similarity=0.191 Sum_probs=150.6
Q ss_pred CCCCccC---cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC---C---------------------
Q psy2281 12 NLQKLDF---HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELYG---P--------------------- 62 (287)
Q Consensus 12 ~~~~~~~---~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--------------------- 62 (287)
+|++++. +..+......+.+. |. .++++|+||+|+|||+|++++++.+.. .
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~ 199 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRN 199 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHc
Confidence 5777553 33456666666643 22 234999999999999999999987621 1
Q ss_pred --------------EEEEeCCCCCCH--HHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhccc---ceeecCC
Q psy2281 63 --------------VIILNETDHLTR--EAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRC---LCIRIPA 118 (287)
Q Consensus 63 --------------~i~ide~d~l~~--~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~ 118 (287)
+++|||++.+.. ..+..+...+...... ..++++++..+ .+.+.++||+ .++.+.+
T Consensus 200 ~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~ 279 (450)
T PRK00149 200 NTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEP 279 (450)
T ss_pred CcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecC
Confidence 899999998753 3456677766655433 34666665543 2667899999 4689999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhcc
Q psy2281 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQ 198 (287)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~ 198 (287)
|+.+++.++++..++..++.+++++++++++.+.||.|.+...+..+....... . ...+. ..++++...++..+
T Consensus 280 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~-~-~~it~----~~~~~~l~~~~~~~ 353 (450)
T PRK00149 280 PDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLT-G-KPITL----ELAKEALKDLLAAQ 353 (450)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhh-C-CCCCH----HHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999666666554332110 0 11222 23444443332211
Q ss_pred C-hhHHHHHHHHHHHHHhcCCCHHHH-----------HHHHHHHHHHhCChHHHHHHHHHHH
Q psy2281 199 S-PKKLLEVRTRLYELLVHSIPVNVL-----------FKYLLEGLLANCDSDLKSKSIEMAA 248 (287)
Q Consensus 199 ~-~~~~~~~~~~~~~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (287)
. .-..+.+.+.+.+ ..|++++++ ..++..|+++.+...+..++.+.++
T Consensus 354 ~~~~~~~~i~~~v~~--~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~fg 413 (450)
T PRK00149 354 KKKITIENIQKVVAE--YYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFG 413 (450)
T ss_pred CCCCCHHHHHHHHHH--HcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHcC
Confidence 1 1122333333322 234444443 4599999999877777777777764
No 156
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.72 E-value=7.7e-20 Score=152.88 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=129.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++.+.+. .|.+++.+.-........+..+.+++++..++...+.
T Consensus 15 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 15 ALDDVSFSVRPGEI--HGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EecCceEEecCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 45566666788999 9999999999999999999987654 6778875422111111122346666776655544455
Q ss_pred CCCCcHHHhccc-ceeec--CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 100 MSQVIPAIRSRC-LCIRI--PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 100 ~~~l~~~l~sr~-~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+++......+. ..+.. ......+....+.+.++..|+ ++.....+.++|+|+.|+ |+...|.++++|||
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL--ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc--cchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 555543322110 00000 001233455567777888787 455567788999999988 66667899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999998888888888643 77999999999988887755
No 157
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.3e-19 Score=147.47 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=126.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+... ..+.+.+++++..++...+.
T Consensus 19 il~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~~~i~~v~q~~~~~~~~tv 90 (220)
T cd03293 19 ALEDISLSVEEGEF--VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------PGPDRGYVFQQDALLPWLTV 90 (220)
T ss_pred EEeceeEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------ccCcEEEEecccccccCCCH
Confidence 44556666688998 9999999999999999999987654 67788755311 12345666666544433344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+.. +...+.....+.+...++..++ ++...+.+.++|+|+.|+ |+...|.++++|||+++
T Consensus 91 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 91 LDNVALGLE-------LQGVPKAEARERAEELLELVGL--SGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 444433222 1223344455667778888887 455566678899999888 66677899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 162 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (220)
T cd03293 162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999888543 77999999888888876544
No 158
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.72 E-value=2.3e-19 Score=144.99 Aligned_cols=169 Identities=15% Similarity=0.085 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~ 97 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+.. .......+++.+.+++++.. .++..
T Consensus 7 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 7 VLKGLNFAAERGEV--LALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 45556666788999 9999999999999999999987654 6778875531 11122334556777777652 23333
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+.. ....+.++..+.+...++..++ ++...+.+.++|+|+.|| |+...|.++++|||+
T Consensus 85 tv~~nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPL-------NLGLSEAEVERRVREALTAVGA--SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCc--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 44455433211 1123445556667778888777 455667788999999888 666678999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChh
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPK 201 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~ 201 (287)
+++|......+.+.+.++.+. ++++|+.+
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999988888888887653 66777764
No 159
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=5.2e-16 Score=140.23 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=149.7
Q ss_pred CCCCccCc---HHHHHHHHHHHh-cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---------------------------
Q psy2281 12 NLQKLDFH---CKQANHLRNLLK-EGDFPHLLFYGPSGAGKKTRIMALLKELY--------------------------- 60 (287)
Q Consensus 12 ~~~~~~~~---~~~~~~l~~~~~-~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--------------------------- 60 (287)
+|++++.. ..+......+.. .|..++++|+||+|+|||+|++++++.+.
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~ 182 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc
Confidence 57776632 234455555554 44445599999999999999999998642
Q ss_pred ------------CCEEEEeCCCCCCH--HHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281 61 ------------GPVIILNETDHLTR--EAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRCL---CIRIPA 118 (287)
Q Consensus 61 ------------~~~i~ide~d~l~~--~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~ 118 (287)
++++++||++.+.. ..+..+...+...... ..++++++..+ .+.+.++||+. ++.+.+
T Consensus 183 ~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 183 KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCC
Confidence 11799999997642 2456676766655443 34556554432 36678999985 789999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhcc
Q psy2281 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQ 198 (287)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~ 198 (287)
|+.+.+.+++++.++..++.+++++..++++.+.|++|.....+.++........ .+.+. ..+.++.+.++...
T Consensus 263 pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~--~~it~----~~a~~~L~~~~~~~ 336 (440)
T PRK14088 263 PDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTG--EEVDL----KEAILLLKDFIKPN 336 (440)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhC--CCCCH----HHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999996655555443211000 01222 22333333332211
Q ss_pred C---hhHHHHHHHHHHHHHhcCCCHHHH-----------HHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhc
Q psy2281 199 S---PKKLLEVRTRLYELLVHSIPVNVL-----------FKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHK 256 (287)
Q Consensus 199 ~---~~~~~~~~~~~~~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (287)
. .-..+.+.+.+.+ ..|++++++ ..++..|+++++...+...+.+.++..+..+..
T Consensus 337 ~~~~~i~~~~I~~~V~~--~~~i~~~~l~s~~R~~~i~~aR~iamyl~r~~~~~s~~~Ig~~fgr~hstV~~ 406 (440)
T PRK14088 337 RVKAMDPIDELIEIVAK--VTGVSREEILSNSRNVKALLARRIGMYVAKNYLGSSLRTIAEKFNRSHPVVVD 406 (440)
T ss_pred cccCCCCHHHHHHHHHH--HcCCcHHHHhCCCCCccccHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHH
Confidence 1 0122333333322 124444443 358899999877666677777766643443333
No 160
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.4e-18 Score=144.91 Aligned_cols=178 Identities=17% Similarity=0.141 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+. .+......++ +.+.+++++..++..
T Consensus 24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 24 VLHNVSFSIGEGEM--MAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eEEeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 45556666688998 9999999999999999999987655 778887553 2222222232 346777777655444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..+.. +...+.++..+.+.+.++..|+ ++...+.+.++|+|+.|+ |+...|+++++|||
T Consensus 102 ~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 172 (233)
T PRK11629 102 FTALENVAMPLL-------IGKKKPAEINSRALEMLAAVGL--EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172 (233)
T ss_pred CCHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 455555543322 2223444556677888888887 555566788999999888 66667899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~ 211 (287)
++++|......+.+.+.++.+. ++++|+.+.+..+ ++++
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~ 216 (233)
T PRK11629 173 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQL 216 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEE
Confidence 9999999999999999888642 7799999887765 3443
No 161
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.72 E-value=3.3e-19 Score=150.35 Aligned_cols=184 Identities=17% Similarity=0.114 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH-------HHHHHHHHHHHhccCCc
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR-------EAQQALRRTMEKYITTC 91 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~-------~~~~~l~~~i~~~~~~~ 91 (287)
.+.+.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+.-.. .....+++.+.+++++.
T Consensus 17 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 17 TVLHGIDLEVKPGEV--VAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 355666667788999 9999999999999999999987654 777887653211 11233455677777776
Q ss_pred EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 92 ~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.++...+..+++..... .+.....++..+.+...++..|+ .+.....+.++|+|+.|| |+...|.++
T Consensus 95 ~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 95 NLFPHRTVLENIIEGPV------IVKGEPKEEATARARELLAKVGL--AGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred ccCCCCCHHHHHHHHHH------HhcCCCHHHHHHHHHHHHHHcCC--cchhhCChhhCChHHHHHHHHHHHHhcCCCEE
Confidence 55444455455433211 01223444555667777887787 455566788999999888 667778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~ 218 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD 218 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999999998888888888754 779999999999899877553
No 162
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.72 E-value=4.2e-16 Score=146.00 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=129.1
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC------------------------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY------------------------ 60 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~------------------------ 60 (287)
.+.+||++|++++|+......+...+..+..++++|+|||||||||+++++.+...
T Consensus 145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d 224 (615)
T TIGR02903 145 QSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD 224 (615)
T ss_pred hhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC
Confidence 45699999999999998887777777656556699999999999999998864331
Q ss_pred -----------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHhcc-----------
Q psy2281 61 -----------------------------------------GPVIILNETDHLTREAQQALRRTMEKYI----------- 88 (287)
Q Consensus 61 -----------------------------------------~~~i~ide~d~l~~~~~~~l~~~i~~~~----------- 88 (287)
+.++++||++.++...|..|++.++.-.
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 0178999999999999999988886411
Q ss_pred ---------------CCcEEEEE--eC-CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2281 89 ---------------TTCRLILC--AN-SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ 150 (287)
Q Consensus 89 ---------------~~~~~i~~--~~-~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 150 (287)
....++++ ++ ..+.+.++++|||..+.|.+++.+++..++.+.+++.++.+++++.+.+.++
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~y 384 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARY 384 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHC
Confidence 11224443 22 3456889999999999999999999999999999988888899999999988
Q ss_pred cCCcHHHHHHHHHHHh
Q psy2281 151 SDRNLRRAILMCEASK 166 (287)
Q Consensus 151 s~G~~r~al~~l~~~~ 166 (287)
+. +.|++++.+..+.
T Consensus 385 s~-~gRraln~L~~~~ 399 (615)
T TIGR02903 385 TI-EGRKAVNILADVY 399 (615)
T ss_pred CC-cHHHHHHHHHHHH
Confidence 76 5799999887664
No 163
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.72 E-value=5e-19 Score=152.90 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||++++++...++ .|.+++.+... . ...+++.+.+.+++..++...+.
T Consensus 17 ~l~~is~~i~~Gei--~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~-~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 17 ALDEVSFEAQKGRI--VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-N-PKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEeEEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-C-hHHHHhceEEecCCCCCCCCCcH
Confidence 44455556688999 9999999999999999999987765 77788765322 1 22455668888877655544455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+.++..+.+...++..|+ ++...+.+..+|+|+.|| |+...|+++++|||+++
T Consensus 93 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~g 163 (301)
T TIGR03522 93 REYLQFIAG-------IYGMKGQLLKQRVEEMIELVGL--RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTG 163 (301)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--chHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 555432211 2234445566677888888887 566677888999999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+.....+.+.+.++.+. ++++|+...+..+++++..+
T Consensus 164 LD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 164 LDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 9999988888888887543 77999999999999988744
No 164
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=9.7e-19 Score=136.18 Aligned_cols=213 Identities=13% Similarity=0.049 Sum_probs=149.0
Q ss_pred CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
++++..++...+++.++..+.+|.+ ..|.||||+|||||+..+++.+..+ .|.+|+.+.-. -..+.|.+.+....
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~i--Ts~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~-~~s~~LAk~lSILk 81 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGI--TSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS-TPSKELAKKLSILK 81 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCce--eEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc-CChHHHHHHHHHHH
Confidence 3455556666777788888889999 9999999999999999999998766 89999877433 22345566666655
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH-----HHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAIL-----MCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~-----~l~ 163 (287)
|...+..-.++.+-+.++ |+.+- -..++. +-...+...++-.++ ++-..+++.++|||+.|||.. ...
T Consensus 82 Q~N~i~~rlTV~dLv~FG---RfPYS-qGRlt~-eD~~~I~~aieyl~L--~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 82 QENHINSRLTVRDLVGFG---RFPYS-QGRLTK-EDRRIINEAIEYLHL--EDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred hhchhhheeEHHHHhhcC---CCccc-CCCCch-HHHHHHHHHHHHhcc--cchHHHhHHhcccchhhhhhhheeeeccC
Confidence 555444434443333221 22111 112333 445566666666666 778889999999999999433 334
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV-----HSIPVNVLFKYLLEGLLA 233 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~i~~~~~~~~~~ 233 (287)
..+++|||.+.+|-.-...+++.++.++++ +++-|+.+.+..+.|.+..+.+ .|.+.+.+-.++...++.
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHhc
Confidence 677899999999988888888899988887 6688999999999999886543 343434444566666664
No 165
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=9.3e-19 Score=151.10 Aligned_cols=182 Identities=17% Similarity=0.108 Sum_probs=135.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC-----------------------HHH
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT-----------------------REA 76 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~-----------------------~~~ 76 (287)
+++.++..+.+|+. ++|.||||+|||||+++|++.+.+. .|.+++.+.-. ...
T Consensus 22 ~l~~vsl~i~~Ge~--v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 22 ALDNVSVEINQGEF--IAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred ceeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 45566666788999 9999999999999999999988765 67776533210 011
Q ss_pred HHHHHHHHHhccCCcE-EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Q psy2281 77 QQALRRTMEKYITTCR-LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNL 155 (287)
Q Consensus 77 ~~~l~~~i~~~~~~~~-~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~ 155 (287)
...+++.+++++|++. .++..+..+++..+... ...+.++..+.+...++..|+. .+...+.+..+|+|+.
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~-------~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGqk 171 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS-------MGVSKEEAKKRAAKYIELVGLD-ESYLQRSPFELSGGQK 171 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHH-------cCCCHHHHHHHHHHHHHHcCCC-hhhhhCChhhCCHHHH
Confidence 2345667888888742 23334555555443321 2345667777888888888883 1445677889999998
Q ss_pred HH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 156 RR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 156 r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|| ++...|.++++|||++++|+.....+.+.+.++.+. ++++|+.+.+...+|+++.+
T Consensus 172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 88 777788999999999999999988888888888753 78999999999999988755
No 166
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.4e-19 Score=151.84 Aligned_cols=188 Identities=19% Similarity=0.170 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.- .......+++.+.+++++..++...
T Consensus 16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 16 ALKDVSLSINPGEF--VALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 45566666788999 9999999999999999999987654 6778875522 1111234556678888876655545
Q ss_pred CCCCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 98 NSMSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
+..+++..+.......+ .+.........+.+...++..++ .+...+.+.++|+|+.|| |+...|.++++|||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 171 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL--LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC--hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 55555543322110000 01111112334556677777777 445556678899999888 66667899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999988653 77999999999899987755
No 167
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.71 E-value=1.3e-16 Score=133.38 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=121.4
Q ss_pred cEEEEEeCCCCC----CcHHHhcccceeecCCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcCCcHHHHHH
Q psy2281 91 CRLILCANSMSQ----VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE------GLTIPPEFALRLAQQSDRNLRRAIL 160 (287)
Q Consensus 91 ~~~i~~~~~~~~----l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~s~G~~r~al~ 160 (287)
+.+++++...+| +.++++|||+++.|++++.+++...+++.+... .+.+++++++.+++.|+||.|+|++
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 344444444333 899999999999999999999999999998752 3578999999999999999999999
Q ss_pred HHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHH
Q psy2281 161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLK 240 (287)
Q Consensus 161 ~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 240 (287)
.++.++..... .+. .....+.+++.... ..-...+-.|..|++++. +.|++ +
T Consensus 87 ~LE~a~~~~~~---~~~--~~it~~~~~~~~~~-----~~~~yDk~gd~HYd~iSA--------------f~KSi----R 138 (300)
T PRK14700 87 LLERMFLISTR---GDE--IYLNKELFDQAVGE-----TSRDFHREGKEFYEQLSA--------------FHKSV----R 138 (300)
T ss_pred HHHHHHhhccc---cCC--CccCHHHHHHHHhH-----HHhcccCCcchhHHHHHH--------------HHHHh----h
Confidence 99986532110 011 01112233332221 112334456677777664 77777 8
Q ss_pred HHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281 241 SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285 (287)
Q Consensus 241 ~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 285 (287)
.+..+++.+|.+||..|++|+. ||+|++.+++++||||||.
T Consensus 139 GSDpDAAlYyLArml~~GEDp~----~IaRRLii~AsEDIGlAdP 179 (300)
T PRK14700 139 GTDPDAAIFWLSVMLDNGVDPL----VIARRMLCIASEDIGNADP 179 (300)
T ss_pred cCCccHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhccCCCH
Confidence 8889999999999999998887 9999999999999999984
No 168
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=8e-20 Score=153.03 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.-.... .++.+.+++++..++...+
T Consensus 16 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 16 VALDDVSLDIPSGEL--VALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---QERNVGFVFQHYALFRHMT 90 (239)
T ss_pred EeeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---cccceEEEecCCcccCCCC
Confidence 345566666788999 9999999999999999999987654 67788754211110 1234566666655443344
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++......+. . +...+..+..+.+...++..++ ++...+.+.++|+|+.|| |+...+.++++|||++
T Consensus 91 v~e~l~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~ 165 (239)
T cd03296 91 VFDNVAFGLRVKP-R--SERPPEAEIRAKVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 165 (239)
T ss_pred HHHHHhhhhhhcc-c--cccCCHHHHHHHHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4455433221000 0 0111334445567777888887 555566788999999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ |+++|+...+...+++++.+
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 210 (239)
T cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM 210 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999988753 78999999998888887755
No 169
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.2e-19 Score=150.60 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+..........++.+.+++++..++...+.
T Consensus 18 ~l~~~sl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 18 VVEDVSLTVNSGEI--VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 45566666788999 9999999999999999999987654 6778875532211122234456777776655443445
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... . ....+.++....+...++..++ ++.....+.++|+|+.|+ |+...+.++++|||+++
T Consensus 96 ~enl~~~~~--~----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (241)
T PRK10895 96 YDNLMAVLQ--I----RDDLSAEQREDRANELMEEFHI--EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAG 167 (241)
T ss_pred HHHHhhhhh--c----ccccCHHHHHHHHHHHHHHcCC--HHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 455433211 0 0112334455667777887777 555567788999999888 66677899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHh
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+|......+.+.+.++.+. ++++|+...+...+++++.+-.
T Consensus 168 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 168 VDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 9999888888888887654 7799999999999888765533
No 170
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=2.2e-19 Score=150.44 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR-EAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.... .....+++.+.+++++..++...+
T Consensus 16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 16 VLHNIDLNIDQGEV--VVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 45566666688999 9999999999999999999987654 788887653211 122334556777777765554445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..+.. .+...+..+....+.+.++..|+ ++...+.+..+|+|+.|+ |+...|.++++|||++
T Consensus 94 v~~~l~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 165 (240)
T PRK09493 94 ALENVMFGPL------RVRGASKEEAEKQARELLAKVGL--AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165 (240)
T ss_pred HHHHHHhHHH------HhcCCCHHHHHHHHHHHHHHcCC--hHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 5555433211 01123445555667778888777 555667788999999888 6666788999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999998888888888653 77999999999888887755
No 171
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6.9e-19 Score=150.47 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+++.++..+.+|+. ++|.||||+|||||++++++.+.+. .|++|+.+. .......+++.+.++++++. .++..+
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 22 TLNDVSFHVKQGEW--LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL-TEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC-CcCcHHHHHhhceEEEcChHHhccccc
Confidence 45556666688999 9999999999999999999988655 788888653 22223345667888888752 444445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..+.. ....+.++..+.+...++..|+ ++...+.+.++|+|+.|+ |+...|.++++|||++
T Consensus 99 v~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 99 VEDDVAFGLE-------NKGIPHEEMKERVNEALELVGM--QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred HHHHHHhhHH-------hCCCCHHHHHHHHHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 5566543322 1234566667778888888887 555667778999999888 7777889999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+.+.+. .+++++.+
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l 213 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVM 213 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE
Confidence 99999998898999988753 67999998884 68877644
No 172
>PRK09087 hypothetical protein; Validated
Probab=99.71 E-value=3.8e-16 Score=129.00 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=116.6
Q ss_pred CCCCccC---cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC------------------CEEEEeCCC
Q psy2281 12 NLQKLDF---HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------PVIILNETD 70 (287)
Q Consensus 12 ~~~~~~~---~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------~~i~ide~d 70 (287)
+|++++. +..+...+..+... ..|.++|+||+|+|||||+++++..... ..+++||++
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~ 97 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPNW-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDID 97 (226)
T ss_pred ChhceeecCchHHHHHHHHhcccC-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCC
Confidence 6888774 44556666554422 2334999999999999999999855332 168999999
Q ss_pred CCCHHHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhccc---ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy2281 71 HLTREAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142 (287)
Q Consensus 71 ~l~~~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 142 (287)
.+.. .+..+...+....+. ..++++++... ...+.++||+ .++.+.+|+.+++..++++.++..++.++++
T Consensus 98 ~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 98 AGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 7643 356688888776654 44555555432 2468899999 6899999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Q psy2281 143 FALRLAQQSDRNLRRAILMCEAS 165 (287)
Q Consensus 143 ~~~~l~~~s~G~~r~al~~l~~~ 165 (287)
+.+++++.+.|+++.++..+..+
T Consensus 177 v~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 177 VVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999977655544
No 173
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.71 E-value=2e-19 Score=149.54 Aligned_cols=181 Identities=18% Similarity=0.143 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh-----CCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL-----YGP--VIILNETDHLTRE-AQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~-----~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++.. .+. .|.+++.+.-... ....+++.+.+++++..+
T Consensus 15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 15 ALKDISLDIPKGEI--TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 44555666688998 9999999999999999999998 543 6778875421111 123345567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR--LAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+ ..+..+++..+... ......++..+.+...++..|+ .+...+. ..++|+|+.|| |+...+.++
T Consensus 93 ~-~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 93 F-PGSIYDNVAYGLRL------HGIKLKEELDERVEEALRKAAL--WDEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred c-cccHHHHHHhHHHh------cCCCcHHHHHHHHHHHHHHcCC--ChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 45555655443221 1111223345667777888787 4444444 48899999888 666668899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l 213 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFL 213 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEE
Confidence 999999999999999888888888664 77999999988888877644
No 174
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.71 E-value=1.1e-18 Score=144.56 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+. .+......++ +.+.+++++..++..
T Consensus 20 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 20 VLKGVSLSIGKGEI--VAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 44556666688998 9999999999999999999987655 677887542 1222112223 457777776554444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... +...+..+..+.+...++..|+ ++...+.+..+|+|+.|+ ++...++++++|||
T Consensus 98 ~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 168 (221)
T TIGR02211 98 FTALENVAMPLL-------IGKKSVKEAKERAYEMLEKVGL--EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP 168 (221)
T ss_pred CcHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 444455433221 1122333445566777888787 555667778999999988 66667899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~ 211 (287)
++++|......+.+.+.++.++ ++++|+...+.. +|+++
T Consensus 169 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~ 212 (221)
T TIGR02211 169 TGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVL 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEE
Confidence 9999999999998999888653 779999887754 46554
No 175
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4e-19 Score=149.11 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-----CHHHHHHHHHHHHhccCCcEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-----TREAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-----~~~~~~~l~~~i~~~~~~~~~ 93 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.- ........++.+.+++++..+
T Consensus 16 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 16 QALFDITLDCPQGET--LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 455666677789999 9999999999999999999987654 7788886521 111223445567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
+...+..+++..... .+......+....+...++..|+ ++.....+.++|+|+.|+ |+...+.++++
T Consensus 94 ~~~~tv~e~i~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~~~p~llil 165 (242)
T PRK11124 94 WPHLTVQQNLIEAPC------RVLGLSKDQALARAEKLLERLRL--KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred cCCCcHHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 544455555432111 01223344555667778888887 455566678999999888 66667889999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 166 DEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999888888888888653 78999999998888887654
No 176
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.6e-18 Score=145.49 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+.-... ...+++.+.+++++..++...+.
T Consensus 16 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 16 AVNNLNLEIAKGEF--LVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD-PVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred EeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC-hHHhhcceEEEccCccccCCCcH
Confidence 44555666688999 9999999999999999999987654 6778875432111 22334557777777655544455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+.++..+.+.+.++..++.-.....+.+.++|+|+.|+ |+..-+.++++|||+++
T Consensus 93 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 165 (242)
T cd03295 93 EENIALVPK-------LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGA 165 (242)
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 555433211 122344455566778888888731024566788999999888 66677899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 166 LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999988888889888653 779999999999888877553
No 177
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.6e-19 Score=149.84 Aligned_cols=180 Identities=13% Similarity=0.053 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.+|+.+.-. .....+++.+.+++++.. .++..+
T Consensus 20 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 20 ALKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA-ENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred eeeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC-CCHHHHHhhEEEEecChhhhhccCc
Confidence 55666666788999 9999999999999999999987655 77888765321 112334556777777642 233334
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+..+..+.+...++..|+ .+...+.+.++|+|+.|| |+...|+++++|||++
T Consensus 97 v~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 97 VWDDVAFGPV-------NMGLDKDEVERRVEEALKAVRM--WDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred HHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHCCC--HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 5555543222 1234555666677788888887 555667788999999888 7777889999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. ++++|+.+.+.+++|+++.+
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l 211 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL 211 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999888753 78999999999999987755
No 178
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.1e-18 Score=151.97 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCR--LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~--~i~ 95 (287)
+++.++..+..|+. +.|.||||||||||+++|++.+.+. .|.+++.+. ++......+++.+.+++|+.. +..
T Consensus 30 ~l~~vsl~i~~Ge~--~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 30 ALDGVSFTLERGKT--LAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 45566666788999 9999999999999999999987654 677887653 223333345555777777652 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..+++. ....+..+..+.+...++..|+. +.....+..++|+|+.|| |+...++++++||
T Consensus 108 ~~~v~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE 180 (327)
T PRK11308 108 RKKVGQILEEPLLI------NTSLSAAERREKALAMMAKVGLR-PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE 180 (327)
T ss_pred ccCHHHHHHHHHHH------ccCCCHHHHHHHHHHHHHHCCCC-hHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 22222333333321 11245566677888889888883 234466788999999988 7777789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
|++++|......+.+.+.++.++ ++++|+...+..++|+++.+..
T Consensus 181 Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~ 230 (327)
T PRK11308 181 PVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 230 (327)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999988764 7899999999999999875543
No 179
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.70 E-value=2.3e-19 Score=147.64 Aligned_cols=179 Identities=17% Similarity=0.151 Sum_probs=125.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE--EEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI--LCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i--~~~ 97 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+. . .+++.+.+++++..+. +..
T Consensus 14 ~l~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~-----~~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 14 VLEDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL-E-----KERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccH-H-----HHHhheEEeccccccccCCCC
Confidence 45666667789999 9999999999999999999987655 677887542 1 2345577777765432 112
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+...+. .+.....+...+.+...++..++ ++...+.+.++|+|+.|+ |+...++++++|||+
T Consensus 86 tv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 86 SVRDVVLMGLYGHK---GLFRRLSKADKAKVDEALERVGL--SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cHHHHHHhcccccc---ccccCCCHHHHHHHHHHHHHcCC--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 33344332211000 00001122344566777887777 455566778999999888 677778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|+.....+.+.+.++.+. ++++|+.+.+.+++++++.+
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999898888888643 77999999998888876644
No 180
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.70 E-value=2e-19 Score=148.94 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+..........++.+.+++++..++...+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 15 ILFGVSLTVPEGEI--VALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred EeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 44556666688988 9999999999999999999987654 6778875432111111223446677776554443344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE-GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
.+++..... +.. ..+....+...++.. ++ ++...+.+.++|+|+.|+ |+..-+.++++|||++
T Consensus 93 ~~~l~~~~~-------~~~--~~~~~~~~~~~l~~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 161 (222)
T cd03224 93 EENLLLGAY-------ARR--RAKRKARLERVYELFPRL--KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161 (222)
T ss_pred HHHHHHHhh-------hcC--chhHHHHHHHHHHHHHhh--hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 444433221 111 122333444455554 33 445566788899999888 5666688999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 162 GLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee
Confidence 99999999999999888653 789999999999988876553
No 181
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.70 E-value=2.9e-18 Score=140.57 Aligned_cols=174 Identities=16% Similarity=0.117 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|++ ++|.||||+|||||++++++...+. .|.+++.+... . ..+++.+.+++++..++...+.
T Consensus 15 ~l~~~~~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~--~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 15 VLDDISLHVKKGEI--YGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK-N--IEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccc-h--HHHHhhEEEecCCCccCccCcH
Confidence 44455555678888 9999999999999999999987654 67788765322 1 2334556677776655544455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... ....+ .+.+...++..++ ++...+.+.++|+|+.|+ |+...|.++++|||+++
T Consensus 90 ~e~l~~~~~-------~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 90 RENLRLLAR-------LLGIR----KKRIDEVLDVVGL--KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred HHHHHHHHH-------hcCCc----HHHHHHHHHHcCC--HHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 555543322 11112 2344556666676 556667788999999888 56666889999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 199 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGII 199 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 9999998888888888653 77999999988888876543
No 182
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=2.8e-19 Score=152.43 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcEE-EEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCRL-ILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~~-i~~ 96 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++.+.+. .|.+|+.+.- .......+++.+.+++++... ++.
T Consensus 15 ~il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 15 PVLKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred ccccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 355666666788999 9999999999999999999987655 6788876531 111123345567777776542 222
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... ....+..+..+.+...++..|+ ++.....+.++|+|+.|| |+...|.++++|||
T Consensus 93 ~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 93 TDIDSDIAFSLR-------NLGVPEAEITRRVDEALTLVDA--QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred ccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 233333332221 1123445555667777777777 444556678899999888 67777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999998888889888653 67999999999989988755
No 183
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.70 E-value=2.5e-19 Score=151.66 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC------------CHHHHHHHHHHHHhc
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL------------TREAQQALRRTMEKY 87 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l------------~~~~~~~l~~~i~~~ 87 (287)
+.+.++..+.+|++ +.|.||||+|||||++++++...+. .|.+++.+.. ....+..+++.+.++
T Consensus 20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 20 VLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 45566666688999 9999999999999999999987654 6778875421 111233455667777
Q ss_pred cCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHH
Q psy2281 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILM 161 (287)
Q Consensus 88 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~ 161 (287)
+++..++...+..+++..+.. .+......+..+.+...++..|+ ++.. .+.+.++|+|+.|+ |+..
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~LS~G~~qrv~laral~~ 169 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPI------QVLGLSKQEARERAVKYLAKVGI--DERAQGKYPVHLSGGQQQRVSIARALAM 169 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHcCC--ChhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 777655544455555533211 02223445556677788888887 4433 45678899999888 7777
Q ss_pred HHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
-|.++++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l 225 (257)
T PRK10619 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 225 (257)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 78999999999999999999898888888654 77999999999988987654
No 184
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=2.3e-15 Score=138.29 Aligned_cols=226 Identities=15% Similarity=0.169 Sum_probs=150.9
Q ss_pred CCCCccC---cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC---C---------------------
Q psy2281 12 NLQKLDF---HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELYG---P--------------------- 62 (287)
Q Consensus 12 ~~~~~~~---~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--------------------- 62 (287)
+|++++. +..+......+... +. .++++|+|++|+|||+|++++++.+.. .
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~ 365 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD 365 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh
Confidence 6777764 22344455555542 32 223999999999999999999987521 1
Q ss_pred --------------EEEEeCCCCCCH--HHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281 63 --------------VIILNETDHLTR--EAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRCL---CIRIPA 118 (287)
Q Consensus 63 --------------~i~ide~d~l~~--~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~ 118 (287)
+++|||++.+.. ..+..|...++....+ ..++++++... .+.+.|+||+. ++.+..
T Consensus 366 ~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~ 445 (617)
T PRK14086 366 GKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQP 445 (617)
T ss_pred ccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCC
Confidence 799999998753 3466777777776553 45666666542 47788999984 689999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhc-
Q psy2281 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE- 197 (287)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~- 197 (287)
|+.+...+++.+.++..++.++++++++|++...+++|.+...+.++..+..-.. ..+. ...++++.+.++..
T Consensus 446 PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~--~~it----l~la~~vL~~~~~~~ 519 (617)
T PRK14086 446 PELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNR--QPVD----LGLTEIVLRDLIPED 519 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhC--CCCC----HHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999996666665543221100 1122 22333444443321
Q ss_pred ----cChhHHHHHHHHHHHHHhcCCCHHHH-----------HHHHHHHHHHhCChHHHHHHHHHHH
Q psy2281 198 ----QSPKKLLEVRTRLYELLVHSIPVNVL-----------FKYLLEGLLANCDSDLKSKSIEMAA 248 (287)
Q Consensus 198 ----~~~~~~~~~~~~~~~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (287)
-+.+.+.+.....| |++.+++ ..++.+|+++++...+..++...++
T Consensus 520 ~~~~it~d~I~~~Va~~f-----~v~~~dl~s~~R~~~i~~aRqiAMYL~r~lt~~Sl~~IG~~Fg 580 (617)
T PRK14086 520 SAPEITAAAIMAATADYF-----GLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFG 580 (617)
T ss_pred cCCcCCHHHHHHHHHHHh-----CCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence 12333333333333 3333333 4599999999877777777777776
No 185
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.2e-18 Score=149.47 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcE-EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE-AQQALRRTMEKYITTCR-LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~-~i~~~ 97 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.+|+.+.-... ....+++.+.+++|++. .++..
T Consensus 22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 45566666788999 9999999999999999999988755 7888886532211 12234566788887753 22233
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..... ....+.++..+.+...++..|+...+.....+.++|+|+.|| |+...|.++++|||+
T Consensus 100 tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt 172 (287)
T PRK13637 100 TIEKDIAFGPI-------NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172 (287)
T ss_pred cHHHHHHhHHH-------HCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 45555543322 123456677777888888888842134456678999999888 777788999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|+.....+.+.+.++.++ ++++|+...+..++|+++.+-
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~ 219 (287)
T PRK13637 173 AGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN 219 (287)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999998754 779999999999999887553
No 186
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.70 E-value=2e-16 Score=128.25 Aligned_cols=146 Identities=26% Similarity=0.340 Sum_probs=110.7
Q ss_pred cCCCCCCCccCcHHHHHHHHHHH---hc----CC--CCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLL---KE----GD--FPHLLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~---~~----g~--~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
.+--+|++++||++++...+.+. ++ |. ..+++|+||||+|||.++++++++...+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 34457899999998877655554 22 22 2349999999999999999999887644
Q ss_pred ------------------EEEEeCCCCCCHH------------HHHHHHHHHHhccCC--cEEEEEeCCCCCCcHHHhcc
Q psy2281 63 ------------------VIILNETDHLTRE------------AQQALRRTMEKYITT--CRLILCANSMSQVIPAIRSR 110 (287)
Q Consensus 63 ------------------~i~ide~d~l~~~------------~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~l~sr 110 (287)
++||||.|.+.-+ ..++|+.-|+-..++ .+.|..+|.++-+.++++||
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence 9999999975421 245677666665544 34555666777899999999
Q ss_pred cc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281 111 CL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN 154 (287)
Q Consensus 111 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~ 154 (287)
+. -++|..|++++...+++..+++.-+.++.. .++++..++|.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCC
Confidence 95 699999999999999999999988876544 67777666553
No 187
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.70 E-value=3.1e-18 Score=145.77 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+. ........+++.+.+++++..++...
T Consensus 22 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 22 IFDNISLTVPRGKI--TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 34555566688988 9999999999999999999987654 677787542 22222223445567777776554433
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..++.. +...+..+....+...++..++ .+.....+.++|+|+.|+ |+...+.++++|||+
T Consensus 100 tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 100 NVFDNVAYPLRE------HTQLPAPLLHSTVMMKLEAVGL--RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred CHHHHHHHHHHH------ccCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 444555433221 1122344445556677777777 555666788999999888 566668899999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 172 VGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEE
Confidence 999999999999999988653 78999999999999987654
No 188
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.70 E-value=1.1e-18 Score=149.39 Aligned_cols=186 Identities=19% Similarity=0.199 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCC--CCCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETD--HLTREAQQALRRTMEKYITTCR--LIL 95 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d--~l~~~~~~~l~~~i~~~~~~~~--~i~ 95 (287)
.+++.++..++.|+. +.++|.+||||||+.+++.+.+... .|.+++-+ .++......+++.|.-++|++. +-+
T Consensus 301 ~AVd~isl~L~~gqT--lGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 301 RAVDGISLTLRRGQT--LGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EEeccceeEecCCCe--EEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 345566666788988 9999999999999999999998765 67777644 4556666677888888777652 333
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
-.++.+-+.++++ +.=+.++..+..+++...++..|+. ++...++..+.|||+.+| |+...|+++++||
T Consensus 379 RmtV~qII~EGL~-----vh~~~ls~~eR~~rv~~aL~EVGLD-p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDE 452 (534)
T COG4172 379 RMTVGQIIEEGLR-----VHEPKLSAAERDQRVIEALEEVGLD-PATRNRYPHEFSGGQRQRIAIARALILKPELILLDE 452 (534)
T ss_pred ccCHHHHhhhhhh-----hcCCCCCHHHHHHHHHHHHHHcCCC-hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecC
Confidence 3333344555554 2234578899999999999999995 445678899999999888 8888899999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
|+|++|......+.++++++.++ ++++||...+..+|+.+..+-
T Consensus 453 PTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 453 PTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred CchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 99999999999999999999877 899999999999999887553
No 189
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3.4e-19 Score=150.43 Aligned_cols=175 Identities=16% Similarity=0.141 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.-.. ...+.+++++..++...+.
T Consensus 16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~~~v~q~~~~~~~~tv 87 (255)
T PRK11248 16 ALEDINLTLESGEL--LVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP------GAERGVVFQNEGLLPWRNV 87 (255)
T ss_pred eEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------CCcEEEEeCCCccCCCCcH
Confidence 45556666688999 9999999999999999999987654 677787553111 0124555555443332333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+.. +......+....+...++..|+ ++...+.+.++|+|+.|| |+...|.++++|||+++
T Consensus 88 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 88 QDNVAFGLQ-------LAGVEKMQRLEIAHQMLKKVGL--EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred HHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 344332221 1123344555667778888887 455566788999999988 66666889999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999888542 77999999999999987655
No 190
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=7.6e-15 Score=127.30 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=144.8
Q ss_pred cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------------------------------C-----
Q psy2281 32 EGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------------------------------P----- 62 (287)
Q Consensus 32 ~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------------------------------~----- 62 (287)
.|+.|| ++|+||+|+||||+++.+++.+.+ .
T Consensus 17 ~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id 96 (325)
T PRK08699 17 WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKID 96 (325)
T ss_pred cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHH
Confidence 578999 999999999999999999988631 0
Q ss_pred -------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHH
Q psy2281 63 -------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123 (287)
Q Consensus 63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~ 123 (287)
++++|+++.++..+++.+++.++.++.++.|+++++..+.+.++++|||+.+.|++++.++
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~ 176 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEE 176 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHH
Confidence 8888999999999999999999999888889999888899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH-----HHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhc-
Q psy2281 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAIL-----MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE- 197 (287)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~-----~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~- 197 (287)
...++.+ .|+. ... ..+ .+++|....+.. .-+.++ +. +. ......+.. +.+.+...
T Consensus 177 ~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~~~~~~~r~~~~--~~-l~---~~~~~~~l~----~~~~~~~~k 238 (325)
T PRK08699 177 ALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEEPELRALRIKLL--DI-LA---EPRLLKILD----YAALFDKEK 238 (325)
T ss_pred HHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcCchHHHHHHHHH--HH-HH---ccChhhHHH----HHHHHHhcc
Confidence 9988865 2442 221 122 355664422110 000000 00 00 000111111 11211111
Q ss_pred cChh-HHHHHHHHHHHHHh--cCCCHHHHH---HHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHH
Q psy2281 198 QSPK-KLLEVRTRLYELLV--HSIPVNVLF---KYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271 (287)
Q Consensus 198 ~~~~-~~~~~~~~~~~l~~--~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~ 271 (287)
.+.. .+.-+...+.+++. .+... .+. .+....+.++++...+...++.+.+....+..+.+..+.+|.++.++
T Consensus 239 ~~~~~~l~~l~~~~rDll~~~~~~~~-~~~~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~n~n~~L~le~lll~~ 317 (325)
T PRK08699 239 LPLAVFVGWMQKWLVDLGLCLQHMKP-VYYPAYEDRLLQTASGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINY 317 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCc-ccCHhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 0111 12223333334432 22111 111 12223344567777788888888888888889999999999999887
Q ss_pred HHHH
Q psy2281 272 MAMY 275 (287)
Q Consensus 272 ~~~~ 275 (287)
...+
T Consensus 318 ~~~~ 321 (325)
T PRK08699 318 LELK 321 (325)
T ss_pred HHHh
Confidence 6553
No 191
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.69 E-value=7.7e-19 Score=157.84 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------EEEEeCCCCC--CHHHHHHHH-HHHHhccCCc
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------VIILNETDHL--TREAQQALR-RTMEKYITTC 91 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------~i~ide~d~l--~~~~~~~l~-~~i~~~~~~~ 91 (287)
.+++.++..+..|+. +.|.|.|||||||+++++.+.+... -|++++.|.+ +......++ +.+.+++|++
T Consensus 23 ~~v~~vsf~v~~GE~--lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 23 PAVRDVSFEVEPGEI--LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred eeeecceEEecCCcE--EEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence 356677777799999 9999999999999999999988644 6777876543 333332232 2345555543
Q ss_pred E--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 92 R--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 92 ~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
. +-+..+..+.+.+.++-+ ...+.++..+.+.+.++..|+.-+....++..++|||+.|| |+...|+
T Consensus 101 ~~slnP~~tIg~Qi~E~~~~h------~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~ 174 (539)
T COG1123 101 MTSLNPVMTIGDQIREALRLH------GKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPK 174 (539)
T ss_pred hhhcCchhhHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCC
Confidence 1 111112222244444321 12347889999999999999952222234999999999998 6667789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
++++||||+++|.....++.+.++++.++ ++++|+...+..++|++..|..+.+ ++++|++
T Consensus 175 LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999877 8899999999999999886543322 4455544
No 192
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=3.8e-19 Score=145.51 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE-EEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL-ILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~-i~~~~ 98 (287)
+.+.++..+++|+. +.|.||||+|||||++++++...+. .|.+++.+. .. ...++.+.+++++..+ ++..+
T Consensus 15 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~---~~~~~~i~~~~q~~~~~~~~~t 88 (205)
T cd03226 15 ILDDLSLDLYAGEI--IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI-KA---KERRKSIGYVMQDVDYQLFTDS 88 (205)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh-hh---HHhhcceEEEecChhhhhhhcc
Confidence 45555666688998 9999999999999999999987655 677887652 21 2234456666666432 22233
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ..... ...+.+.++..++ ++...+.+.++|+|+.|| |+...|.++++|||++
T Consensus 89 v~e~l~~~~~-------~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 89 VREELLLGLK-------ELDAG----NEQAETVLKDLDL--YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred HHHHHhhhhh-------hcCcc----HHHHHHHHHHcCC--chhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 4444432211 11111 1345667777777 455566778899999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
++|+.....+.+.+.++.+. ++++|+...+..++|+++.
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 198 (205)
T cd03226 156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLL 198 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999998888888888644 7799999998888876653
No 193
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.69 E-value=6.5e-19 Score=148.24 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC------C-EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------P-VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------~-~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+|+.+.-.. ......++.+.+++++..+
T Consensus 16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 16 ALKNINLDIPKNQV--TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eecceeEEECCCCE--EEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45666667789999 999999999999999999998743 1 677887653211 1123445667888877655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..+.. ... .+..+..+.+...++..|+. +.+...+.+.++|+|+.|+ |+...|++
T Consensus 94 ~~-~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 94 FP-MSIYDNIAYGPR-------LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred CC-CCHHHHHHhHHH-------hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 44 455555543322 111 23455566777888888873 0144556678899999888 66677899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++|+++.+-
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 217 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFY 217 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999999999988888888888654 779999999999999877553
No 194
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.6e-18 Score=148.12 Aligned_cols=179 Identities=12% Similarity=0.090 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++.+.+. .|.+|+.+.-.. ....+++.+.++++++. +++..+
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-TVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHHhhheEEEEeCHHHhccccc
Confidence 55666667789999 9999999999999999999998755 778888653222 12234566788887752 444445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+.++..+.+...++..|+ ++.....+..+|+|+.|+ |+..-|+++++|||++
T Consensus 99 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 99 VQDDVAFGLE-------NIGVPREEMVERVDQALRQVGM--EDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred HHHHHhhhHh-------hCCCCHHHHHHHHHHHHHHcCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 5555543322 1123455666777888888887 566667788999999888 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. ++++|+.+.+.. +++++.+
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l 213 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVM 213 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 99999999999999988763 779999988864 7877644
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.5e-19 Score=165.89 Aligned_cols=189 Identities=11% Similarity=0.049 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.-........++.+.+++++..++...+
T Consensus 19 ~il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 19 HALKSVNLTVYPGEI--HALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred EEeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 356667777789999 9999999999999999999988654 677787542111111112234666666654443334
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..+.........+...+.++....+...++..|+ .+...+.+.++|+|+.|| |+...+.++++|||++
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~ 174 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL--KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC--CCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 444443221100000011112334556677788888887 445567788999999998 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. |+++|+...+..++++++.+
T Consensus 175 ~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l 218 (510)
T PRK09700 175 SLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM 218 (510)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999988754 78999999999999987754
No 196
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.69 E-value=5.6e-19 Score=147.53 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc-CCcEEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI-TTCRLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~-~~~~~i~~~~ 98 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+... . ...+++.+.+.+ +...++...+
T Consensus 36 il~~vs~~i~~Ge~--~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 36 ALKGISFTIEKGEI--VGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-R-RKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-c-chhhcccEEEEcCCccccCCCCc
Confidence 34455555578888 9999999999999999999987655 67777654211 1 112333444443 2233332223
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... +.....++..+.+...++..++ ++.....+..+|+|+.|+ |+...|.++++|||++
T Consensus 112 v~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 112 VIDSFYLLAA-------IYDLPPARFKKRLDELSELLDL--EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 3333322111 2233445555566677777776 555566788999999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 227 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999988653 77999999888888876544
No 197
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=3.1e-18 Score=146.97 Aligned_cols=182 Identities=10% Similarity=0.111 Sum_probs=135.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~ 95 (287)
+++.++..+++|++ +.|.||||+|||||+++|++...+. .|.+|+.+... ......+++.+.+++|++. .++
T Consensus 22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 22 AIHDVNTEFEQGKY--YAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 55666666788999 9999999999999999999988755 78888865321 1122345677888888752 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..+.. ....+.++..+.+...++..|+. .+.....+.++|+|+.|+ |+...|+++++||
T Consensus 100 ~~tv~e~i~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE 171 (286)
T PRK13646 100 EDTVEREIIFGPK-------NFKMNLDEVKNYAHRLLMDLGFS-RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171 (286)
T ss_pred hhhHHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHcCCC-hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2345555543322 11345566667778888888872 134456788999999988 7778889999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|+.....+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 172 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM 219 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999998653 78999999999999988755
No 198
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.9e-18 Score=150.01 Aligned_cols=183 Identities=14% Similarity=0.092 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH---------------HHHHHHHHHH
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR---------------EAQQALRRTM 84 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~---------------~~~~~l~~~i 84 (287)
+.+.++..+.+|++ ++|.||||||||||+++|++.+.+. .|.+|+.+.-.. .....+++.+
T Consensus 41 ~L~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 41 ALNNISYTFEKNKI--YFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 55566666688999 9999999999999999999988655 778887542111 1234456677
Q ss_pred HhccCCcE-EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----H
Q psy2281 85 EKYITTCR-LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----A 158 (287)
Q Consensus 85 ~~~~~~~~-~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----a 158 (287)
.+++|++. .++..+..+++..+.. ....+.++..+++...++..|+. .....+...++|+|+.|| |
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGqkqRvaiAra 190 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPV-------ALGVKKSEAKKLAKFYLNKMGLD-DSYLERSPFGLSGGQKRRVAIAGI 190 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHH-------hcCCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCHHHHHHHHHHHH
Confidence 77777652 2223345555533321 11235566667778888888872 134556678899999988 7
Q ss_pred HHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281 159 ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 159 l~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+...+.++++|||++++|......+.+.+.++.+. ++++|+.+.+...+|+++.+-
T Consensus 191 L~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 191 LAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 77778999999999999999998888888887653 789999999988899887553
No 199
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.69 E-value=3.6e-18 Score=142.07 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALR-RTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~-~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.- +.......+ +.+.+++++..++..
T Consensus 25 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 25 ILTGVELVVKRGET--IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEeccEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 45556666688998 9999999999999999999987655 6778875432 222111222 346666766554443
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... +...+..+..+.+...++..++ .+.....+.++|+|+.|+ |+...++++++|||
T Consensus 103 ~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 103 LNALENVELPAL-------LRGESSRQSRNGAKALLEQLGL--GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred cCHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 344444433221 2223344556677788888887 455566788999999888 67777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~ 212 (287)
++++|......+.+.+.++.++ ++++|+...+.. +++++.
T Consensus 174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~ 218 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLR 218 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEE
Confidence 9999999998888889888653 679999887644 665543
No 200
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=2e-18 Score=148.23 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=132.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~ 95 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.+|+.+... .......++.+.++++++. .++
T Consensus 22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 55666667789999 9999999999999999999988765 78888865321 1112334455777777642 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
..+..+++..+.. ......++..+.+...++..|+ + +...+.+.++|+|+.|| |+...|.++++|
T Consensus 100 ~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 100 ENTVLKDVEFGPK-------NFGFSEDEAKEKALKWLKKVGL--SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred cchHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--ChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3345555533221 1223455666677788888787 4 34566788999999888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 171 EPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l 218 (287)
T PRK13641 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL 218 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999988888889888653 78999999999999988755
No 201
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.68 E-value=3.2e-18 Score=142.40 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=121.7
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~ 106 (287)
.+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+.-.... ...+++++..++...+..+++..+
T Consensus 7 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 7 TIQQGEF--ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP------DRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred EEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------hheEEecCcccCCCCCHHHHHHHH
Confidence 3467888 9999999999999999999988654 67788754211111 013455555444334444554333
Q ss_pred HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCc
Q psy2281 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEP 181 (287)
Q Consensus 107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~ 181 (287)
.... +...+..+..+.+...++..++ ++...+.+.++|+|+.|| |+...++++++|||++++|.....
T Consensus 79 ~~~~-----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 79 VDRV-----LPDLSKSERRAIVEEHIALVGL--TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHhc-----ccCCCHHHHHHHHHHHHHHcCC--HHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 2110 1223445555667778888787 555566788999999988 666778999999999999999999
Q ss_pred cHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 182 DWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 182 ~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999989888653 78999999999999987654
No 202
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.8e-18 Score=142.29 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+++|+. +.++|+|||||||+.+++.+...+. .|++++.|...-.
T Consensus 27 ~avd~Vsf~i~~ge~--~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~----------------------- 81 (268)
T COG4608 27 KAVDGVSFSIKEGET--LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS----------------------- 81 (268)
T ss_pred EEecceeEEEcCCCE--EEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-----------------------
Confidence 345666677789999 9999999999999999999998866 7888876621100
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
.++..+.+.+.++..|+. ++...++..++|||+.|| |+...|+++..|||++
T Consensus 82 ----------------------~~~~~~~v~elL~~Vgl~-~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 82 ----------------------KEERRERVLELLEKVGLP-EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred ----------------------hhHHHHHHHHHHHHhCCC-HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence 456777888888988964 456778899999999998 8889999999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhc
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVH 216 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~ 216 (287)
++|...+..+.+++.++.+. ++.+|+...+..++|++..+..+
T Consensus 139 aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G 186 (268)
T COG4608 139 ALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLG 186 (268)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecC
Confidence 99999999999999999877 88999999999999998765443
No 203
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-18 Score=151.10 Aligned_cols=186 Identities=13% Similarity=0.161 Sum_probs=132.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDH--LTREAQQALR-RTMEKYITTCR 92 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~ 92 (287)
+++.++..+.+|++ +.|.||||||||||+++|++.+.+ . .|.+|+.+. ++......++ +.+.+++|+..
T Consensus 22 ~l~~vsl~i~~Ge~--~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 22 AVDRISYSVKQGEV--VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEeeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 56667777789999 999999999999999999998753 1 678888664 2332222222 23666666642
Q ss_pred --EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 93 --LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 93 --~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
+....+..+.+...++. ......++..+.+.+.++..|+.-. .....+..++|+|+.|| |+...|+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~------~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~ 173 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKV------HQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPK 173 (326)
T ss_pred hhcCCcCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 22222222233333321 1123556667778888888888421 23456788999999988 7777889
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
++++|||++++|......+.+.+.++.++ ++++|+...+..++|+++.|..
T Consensus 174 llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 174 LLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999998764 7899999999999999875543
No 204
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=1.8e-15 Score=125.56 Aligned_cols=158 Identities=21% Similarity=0.350 Sum_probs=120.5
Q ss_pred CCCCCCCccC--cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------
Q psy2281 9 RPNNLQKLDF--HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------------- 61 (287)
Q Consensus 9 ~p~~~~~~~~--~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------- 61 (287)
.+.+|++++. +......++.++.....++++|+||+||||||+++++++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLE 89 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcc
Confidence 3456777763 5567888888876555555999999999999999999876531
Q ss_pred --CEEEEeCCCCCCHHH--HHHHHHHHHhcc-CCcEEEEEeCCCC-C--Cc-HHHhccc---ceeecCCCCHHHHHHHHH
Q psy2281 62 --PVIILNETDHLTREA--QQALRRTMEKYI-TTCRLILCANSMS-Q--VI-PAIRSRC---LCIRIPAPTHEEIVSVLT 129 (287)
Q Consensus 62 --~~i~ide~d~l~~~~--~~~l~~~i~~~~-~~~~~i~~~~~~~-~--l~-~~l~sr~---~~~~~~~~~~~~~~~~l~ 129 (287)
.+++|||++.+.... +..+...++... ....++++++... . +. +.+.+|+ ..+.+++++.++....+.
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQ 169 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHH
Confidence 189999999887533 666766665532 2345666665432 1 22 6788887 368899999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 130 NICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
..+.+.++.+++++++.+++.++|+.|.+...++.+-
T Consensus 170 ~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 170 SRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9888889999999999999999999999888776644
No 205
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=3.6e-18 Score=146.65 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~ 95 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++.+.+. .|.+|+.+.-. ......+++.+.+++|++. .++
T Consensus 21 ~l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 21 ALFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 55566666789999 9999999999999999999988765 78889876321 1123345667888887752 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..+.. ....+.++....+.+.++..++. +....+.+..+|+|+.|| ++...|+++++||
T Consensus 99 ~~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE 170 (288)
T PRK13643 99 EETVLKDVAFGPQ-------NFGIPKEKAEKIAAEKLEMVGLA-DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170 (288)
T ss_pred cchHHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCCC-hhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2355555543322 11345566777788888888872 123456678899999888 7777789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
|++++|+.....+.+.+.++.+. ++++|+.+.+..++++++.+-.+.+ +++++..
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999988888888888654 7899999999999998875533222 4555543
No 206
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.68 E-value=5.4e-18 Score=140.59 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC----CC--CCHHHHHHH-HHHHHhccCCcE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET----DH--LTREAQQAL-RRTMEKYITTCR 92 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~----d~--l~~~~~~~l-~~~i~~~~~~~~ 92 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++.+.+. .|.+++. +. .+......+ .+.+.+++++..
T Consensus 23 il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 23 VLKNVSLTVNAGEC--VALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEecceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 45566666788999 9999999999999999999987654 6677631 21 111111122 234667777665
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
++...+..+++...+. ......+...+.+...++..++ ++.. ...+.++|+|+.|+ |+...+.++
T Consensus 101 ~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 101 VIPRVSALEVVAEPLL-------ERGVPREAARARARELLARLNI--PERLWHLPPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred cCCCccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4444444444443332 1123334455566777777777 4432 45678899999888 666668899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++|+++.
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 172 LLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence 999999999999988888888888654 7799998888888887653
No 207
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=3.4e-18 Score=146.98 Aligned_cols=183 Identities=13% Similarity=0.081 Sum_probs=135.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~ 95 (287)
+++.++..+++|+. +.|.||||+|||||+++|++...+. .|.+|+.+.-. ......+++.+.+++|++. .++
T Consensus 22 ~L~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 22 ALYDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 45566666789999 9999999999999999999988765 77888765321 1223345566888887652 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..+.. ....+.++..+.+..+++..++. .....+.+..+|+|+.|+ |+...|+++++||
T Consensus 100 ~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE 171 (290)
T PRK13634 100 EETVEKDICFGPM-------NFGVSEEDAKQKAREMIELVGLP-EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171 (290)
T ss_pred hhhHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCCC-hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3355555543322 11345566667788888888872 133456688999999888 7777889999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
|++++|+.....+.+.+.++.++ ++++|+...+...+|+++.+.
T Consensus 172 Pt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220 (290)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999999888653 789999999999999887553
No 208
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.68 E-value=2.5e-18 Score=150.94 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=158.9
Q ss_pred CCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc
Q psy2281 14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC 91 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~ 91 (287)
.+.++...+.+.++..++.|++ -.|.|.||+|||||+++|.+.+.|+ .|++|+...-.....++.+..|+.+.|+.
T Consensus 11 tK~f~~~~And~V~l~v~~GeI--HaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF 88 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEI--HALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF 88 (501)
T ss_pred EEEcCCEEecCceeeeecCCcE--EEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence 3344444455677778899999 9999999999999999999999888 89999865444445677788899999999
Q ss_pred EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 92 ~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.++...|+.+|+..+.-+. .....+....++.+..++++.|+.++++ .++.++|-|..|| ++..-++++
T Consensus 89 ~Lv~~lTV~ENiiLg~e~~----~~~~~~~~~~~~~i~~l~~~yGl~vdp~--~~V~dLsVG~qQRVEIlKaLyr~a~iL 162 (501)
T COG3845 89 MLVPTLTVAENIILGLEPS----KGGLIDRRQARARIKELSERYGLPVDPD--AKVADLSVGEQQRVEILKALYRGARLL 162 (501)
T ss_pred ccccccchhhhhhhcCccc----cccccCHHHHHHHHHHHHHHhCCCCCcc--ceeecCCcchhHHHHHHHHHhcCCCEE
Confidence 9999999999987765432 1335678899999999999999987654 5688999998888 777778899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++||||+.+.+...+.+...++.+.++ ++++|..+++.+++|++-.|
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVL 213 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL 213 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEE
Confidence 999999999998888888888888877 88999999999999987643
No 209
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.68 E-value=3.5e-19 Score=150.73 Aligned_cols=180 Identities=17% Similarity=0.078 Sum_probs=124.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..+.+..+.
T Consensus 17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 17 LLDDVSLTLRPGEV--VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL-ADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc-ccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 45566666788999 9999999999999999999987654 677777542 111112234456666666544333333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH------HHHHhhc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM------CEASKVQ 168 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~------l~~~~~~ 168 (287)
.+++..... ....+.++....+...++..++ .+.....+.++|+|+.|| |+.. .+.++++
T Consensus 94 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL 164 (258)
T PRK13548 94 EEVVAMGRA-------PHGLSRAEDDALVAAALAQVDL--AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164 (258)
T ss_pred HHHHHhhhc-------ccCCCcHHHHHHHHHHHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 333322211 0111223334556777777777 455566788999999888 3432 4689999
Q ss_pred CCCcccccCccCccHHHHHHHHH-HH----HHhccChhHHHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTA-KL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~-~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|||++++|......+.+.+.++. +. ++++|+...+..++++++.+
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence 99999999999999999999887 32 77999999999999988755
No 210
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=3.8e-18 Score=145.82 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+.... ....+++.+.+++++.. .++..+
T Consensus 19 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 19 ALNNINFIAPRNSR--IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE-NIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred eeeEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHHHhheEEEecCccccccccc
Confidence 45556666688999 9999999999999999999987655 778887653221 12334566777777652 233334
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+.+...+.+...++..++ .+.....+..+|+|+.|+ |+...|.++++|||++
T Consensus 96 v~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 96 VEQDIAFGPI-------NLGLDEETVAHRVSSALHMLGL--EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred HHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4444432211 1123555556667778888787 555667788999999888 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|......+.+.+.++.++ ++++|+.+.+.+.+++++.+.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~ 212 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD 212 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999998888899888753 779999999999999887553
No 211
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.3e-18 Score=138.35 Aligned_cols=166 Identities=15% Similarity=0.129 Sum_probs=130.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~ 112 (287)
..++|+||+||||++++|++...++ .|.+++--....+ ....-.+.++|++|+.++++..++..|+..+..
T Consensus 27 TAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~---- 102 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW---- 102 (352)
T ss_pred EEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc----
Confidence 7999999999999999999999887 4555542111110 011224679999999999999999999887654
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHH
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYI 187 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i 187 (287)
+. .......++...|+ ++-..++...+|||+.|| |+...|.++++|||.+++|..-..++.-.+
T Consensus 103 ---~~------~~~~fd~iv~lLGI--~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 103 ---KS------MRAQFDQLVALLGI--EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred ---cc------chHhHHHHHHHhCc--HHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence 21 23344556666677 778889999999999988 888999999999999999988888888899
Q ss_pred HHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC
Q psy2281 188 RDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI 218 (287)
Q Consensus 188 ~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~ 218 (287)
+.+.++ +.++|+.+++.++.|++..+-++++
T Consensus 172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV 207 (352)
T COG4148 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKV 207 (352)
T ss_pred HHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeE
Confidence 999888 6799999999999999875544433
No 212
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.68 E-value=1.1e-18 Score=147.23 Aligned_cols=182 Identities=16% Similarity=0.091 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC------------HHHHHHHHHHHHhc
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT------------REAQQALRRTMEKY 87 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~------------~~~~~~l~~~i~~~ 87 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+... ......+++.+.++
T Consensus 15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 15 VLDGLNFSVAAGEK--VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 44556666688999 9999999999999999999987654 67777654211 11123345567777
Q ss_pred cCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281 88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMC 162 (287)
Q Consensus 88 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l 162 (287)
+++..++...+..+++...... .......+....+...++..|+ ++...+.+.++|+|+.|+ |+..-
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVL------VLGMARAEAEKRAMELLDMVGL--ADKADHMPAQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCC--hhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence 7766555444555554332110 1123344555667777888777 555566778899999888 66666
Q ss_pred HHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|+++++|||++++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 8999999999999999888888888888653 77999999998888887754
No 213
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.68 E-value=3.2e-18 Score=143.06 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+. ...... .++.+.+.+++..+++..+.
T Consensus 16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i-~~~~~~-~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 16 ALDDVSFTVRPGEF--VALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL-RRAPRA-ALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc-ccCChh-hhhhEEEeCCCCCCcccCcH
Confidence 44555666688999 9999999999999999999987655 677777542 111111 22456666776555444444
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... ....+..+..+.+...++..|+ ++...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 92 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 162 (236)
T TIGR03864 92 RQNLRYHAA-------LHGLSRAEARERIAALLARLGL--AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162 (236)
T ss_pred HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 444432211 1223444455667777888777 555667788999999988 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+|......+.+.+.++.+. ++++|+.+.+.. +++++.+-
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~ 206 (236)
T TIGR03864 163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH 206 (236)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe
Confidence 9999999999999888742 779999998875 88776553
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.68 E-value=1.7e-18 Score=147.31 Aligned_cols=182 Identities=11% Similarity=0.070 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE--EEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL--ILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~--i~~~ 97 (287)
+.+.++..+++|++ +.|.||||+|||||+++|++.+.+. .|.+++.+. +.......++.+.+++++... ....
T Consensus 28 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 28 AVKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred eeeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC-CCCchhhHhccEEEEecCchhhcCcch
Confidence 55666777789999 9999999999999999999998655 677887653 211112223345555555321 1111
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+++. .......+..+.+...++..|+. +......+.++|+|+.|+ |+...|.++++|||+
T Consensus 105 tv~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 177 (267)
T PRK15112 105 RISQILDFPLRL------NTDLEPEQREKQIIETLRQVGLL-PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177 (267)
T ss_pred hHHHHHHHHHHh------ccCCCHHHHHHHHHHHHHHcCCC-hHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 122222222220 01233445556677788888872 123345568899999888 677778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999988888899988653 77999999999988987654
No 215
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.68 E-value=3.6e-19 Score=164.41 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|++ ++|.||||+|||||++++++.+.+. .|.+++.+.-........++.+.+++|+..++...+
T Consensus 18 ~~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 18 KALSGAALNVYPGRV--MALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred EEeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 345666666788999 9999999999999999999988665 777887553111111122334666777655544445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..+...+ . .+...+..+..+.+...++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++
T Consensus 96 v~e~l~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 170 (501)
T PRK10762 96 IAENIFLGREFV-N--RFGRIDWKKMYAEADKLLARLNL--RFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTD 170 (501)
T ss_pred HHHHhhhccccc-c--ccCccCHHHHHHHHHHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcC
Confidence 555554332100 0 01122344555667778888887 444566788999999988 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. |+++|+.+.+..++|+++.+
T Consensus 171 ~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 171 ALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999998888888654 77999999999999988754
No 216
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.68 E-value=2.1e-19 Score=159.75 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+++|++ +.|.||||+|||||+++|++.+.+. .|.+++.+.... ....+++.+.+++++..+.+..+
T Consensus 17 ~vL~~vs~~i~~Gei--v~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~-~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 17 TVLDGVDLSVREGSL--VGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL-SARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEeeEEEECCCCE--EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC-CHHHHhcceEEEccCCCCCCCCC
Confidence 445566666689999 9999999999999999999988765 778887553221 12334566777777765555555
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..+..... -.+..++. ...+.+.+.++..++ .+...+.+.++|+|+.|| |+...|.++++|||++
T Consensus 94 v~e~v~~~~~~~~--~~~~~~~~-~~~~~v~~~le~vgl--~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPts 168 (402)
T PRK09536 94 VRQVVEMGRTPHR--SRFDTWTE-TDRAAVERAMERTGV--AQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168 (402)
T ss_pred HHHHHHhccchhc--ccccCCCH-HHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 5554432211000 01222232 334567778888787 556667788999999988 7777889999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. ++++|+.+.+.++++++..+
T Consensus 169 gLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l 212 (402)
T PRK09536 169 SLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212 (402)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999888899999998754 77999999999999988744
No 217
>PRK05642 DNA replication initiation factor; Validated
Probab=99.68 E-value=3.3e-15 Score=124.34 Aligned_cols=156 Identities=15% Similarity=0.252 Sum_probs=116.0
Q ss_pred CCCCCccC--cHHHHHHHHHHHhc-CC--CCcEEEeCCCCCcHHHHHHHHHHHhCC------------------------
Q psy2281 11 NNLQKLDF--HCKQANHLRNLLKE-GD--FPHLLFYGPSGAGKKTRIMALLKELYG------------------------ 61 (287)
Q Consensus 11 ~~~~~~~~--~~~~~~~l~~~~~~-g~--~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------ 61 (287)
-+|++++. +..+...+..+... +. .++++|+||+|+|||+|++++++....
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~ 95 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNL 95 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhh
Confidence 36888763 23344555554332 12 234899999999999999999865421
Q ss_pred ---CEEEEeCCCCCC--HHHHHHHHHHHHhccC-CcEEEEEeCCCC----CCcHHHhccc---ceeecCCCCHHHHHHHH
Q psy2281 62 ---PVIILNETDHLT--REAQQALRRTMEKYIT-TCRLILCANSMS----QVIPAIRSRC---LCIRIPAPTHEEIVSVL 128 (287)
Q Consensus 62 ---~~i~ide~d~l~--~~~~~~l~~~i~~~~~-~~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~~~~~~~~l 128 (287)
+++++||++.+. ...+..|...++.... ...++++++..+ ...+.++||+ .++.+.+++.++...++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 178999998764 2345667777776544 345666665543 2468899999 67889999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 129 TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
+..+...|+.+++++.+++++.+.||.|.++..++.+.
T Consensus 176 ~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 176 QLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 97788889999999999999999999999888877664
No 218
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.68 E-value=1.9e-18 Score=152.42 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=126.8
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++..+.+|++ ++|.||||+|||||+++|++...+. .|.+|+.+..... .....++.+.+++|+..++...+..
T Consensus 16 isl~i~~Gei--~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 16 ADFTLPGQGV--TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 3444578888 9999999999999999999988755 6778875432110 0112344566777766555444555
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++..+.. .....+....+...++..++ ++...+.+.++|+|+.|| |+...|.++++|||++++
T Consensus 94 enl~~~~~---------~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 94 GNLRYGMK---------RARPSERRISFERVIELLGI--GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHhh---------ccChhHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 55544322 11223344556777777777 556667788999999988 677778999999999999
Q ss_pred cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|......+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l 205 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL 205 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999988754 77999999999999987655
No 219
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.68 E-value=1.5e-18 Score=151.32 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=133.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C-EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcE-
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P-VIILNETDH--LTREAQQALR-RTMEKYITTCR- 92 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~-~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~- 92 (287)
+++.++..+.+|++ +.|.|+||||||||+++|++.+.+ . .|.+|+.+. ++......++ +.+.+++|+..
T Consensus 31 ~l~~vsl~i~~Ge~--~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 31 AVNDLNFSLRAGET--LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 45566666788999 999999999999999999999854 2 678887653 2333223333 24667777652
Q ss_pred -EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 -LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 -~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+....+..+++...+.. +...+.++....+.+.++..|+.-. +....+..++|+|+.|| |+...|++
T Consensus 109 ~l~p~~~v~~~i~~~~~~------~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~l 182 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLML------HKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 182 (330)
T ss_pred hcCCCCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 22223333334333321 2234566667778888888887311 12345788999999998 77778899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+++|||++++|......+.+.+.++.++ ++++|+...+..++|+++.+..
T Consensus 183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999998764 7899999999999999875543
No 220
>CHL00181 cbbX CbbX; Provisional
Probab=99.67 E-value=2.9e-15 Score=127.95 Aligned_cols=150 Identities=22% Similarity=0.270 Sum_probs=107.7
Q ss_pred CccCcHHHHHHHHHHH----------hcC-----CCCcEEEeCCCCCcHHHHHHHHHHHhCC-------C----------
Q psy2281 15 KLDFHCKQANHLRNLL----------KEG-----DFPHLLFYGPSGAGKKTRIMALLKELYG-------P---------- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~----------~~g-----~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~---------- 62 (287)
+++|...+++.+..++ ..| ...|++|+|||||||||+++++++.+.. +
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 6888888877666553 111 2334899999999999999999876421 0
Q ss_pred ---------------------EEEEeCCCCC---------CHHHHHHHHHHHHhccCCcEEEEEeCCCCC------CcHH
Q psy2281 63 ---------------------VIILNETDHL---------TREAQQALRRTMEKYITTCRLILCANSMSQ------VIPA 106 (287)
Q Consensus 63 ---------------------~i~ide~d~l---------~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~------l~~~ 106 (287)
+++|||++.+ ..+.+..|.+.|+....+.++|+++ ..+. ..++
T Consensus 104 ~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag-~~~~~~~~~~~np~ 182 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAG-YKDRMDKFYESNPG 182 (287)
T ss_pred HHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC-CcHHHHHHHhcCHH
Confidence 8999999976 3456778888888765555555554 3322 3589
Q ss_pred Hhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHH
Q psy2281 107 IRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ--------SDRNLRRAILMCEAS 165 (287)
Q Consensus 107 l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~G~~r~al~~l~~~ 165 (287)
++|||. .+.|++++.+++..++...+++.+..++++....+.+. .-|+.|.+-+..+.+
T Consensus 183 L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 183 LSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 999996 69999999999999999999999988888776555442 124455544444443
No 221
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.67 E-value=6.2e-19 Score=147.96 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+.-........++.+.+.+++..++...+.
T Consensus 17 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 17 ALNDLSLYVDPGEL--RVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 45556666688988 9999999999999999999987654 7788876432111111122346666666554444455
Q ss_pred CCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 100 MSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
.+++.........++ .+.....++....+...++..|+ ++.....+..+|+|+.|+ |+...+.++++|||++
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~ 172 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL--ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA 172 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 555433221000000 01111223445567777777777 555567788999999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|......+.+.+.++.+. ++++|+.+.+..++++++.+-
T Consensus 173 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 216 (242)
T TIGR03411 173 GMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLH 216 (242)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 99999998888888887653 779999999999999877553
No 222
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=5.2e-19 Score=147.97 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+++|+. ++|.||||+|||||++++++...+. -|.+++.+..........++.+.+++++..++...+
T Consensus 19 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 19 QALHEVSLHINQGEI--VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred eeeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 345566666788999 9999999999999999999987654 677887653221111223445666666654443334
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE-GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
..+++..+.. + ....+....+..+++.. ++ .+.....+.++|+|+.|| |+...|.++++|||+
T Consensus 97 v~~~l~~~~~-------~--~~~~~~~~~~~~~l~~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 97 VEENLAMGGF-------F--AERDQFQERIKWVYELFPRL--HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred HHHHHHHhhh-------c--cChhHHHHHHHHHHHHHHHH--HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 4444432211 1 12223333444555544 24 344456678899999888 666678999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.+. ++++|+...+.+++|+++.+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVL 210 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence 999999988888888888654 77999999999999988755
No 223
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.2e-18 Score=149.13 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=130.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+++.++..+.+|++ +.|.||||+|||||++++++...+. .|.+|+.+.-.......+++.+.+++++.. .++..+
T Consensus 25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 56666666788999 9999999999999999999998755 788887653221122334566777777652 122223
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+..+..+.+..+++..|+ ++...+.+.++|+|+.|+ ++..-|+++++|||++
T Consensus 103 v~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 173 (280)
T PRK13633 103 VEEDVAFGPE-------NLGIPPEEIRERVDESLKKVGM--YEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173 (280)
T ss_pred HHHHHHhhHh-------hcCCCHHHHHHHHHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 3333322211 1123455666777888888887 555667788999999888 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+.+.+.. +++++.+
T Consensus 174 gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l 217 (280)
T PRK13633 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVM 217 (280)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEE
Confidence 99999999999999988653 779999998876 8877644
No 224
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=6.1e-18 Score=144.94 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~ 97 (287)
+++.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+.- .......+++.+.+++++.. .++..
T Consensus 21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 55666667789999 9999999999999999999987655 7888886531 11223345667888887753 22333
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..... ....+..+..+.+...++..|+ .+.....+.++|+|+.|| |+...|.++++|||+
T Consensus 99 tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt 169 (283)
T PRK13636 99 SVYQDVSFGAV-------NLKLPEDEVRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169 (283)
T ss_pred cHHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 44455533221 1123455566677888888887 555667788999999888 777778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.++ ++++|+.+.+..++++++.+
T Consensus 170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999888899888763 77999999999999988755
No 225
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=8.8e-19 Score=149.33 Aligned_cols=179 Identities=12% Similarity=0.158 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++.. .++..+
T Consensus 24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i-~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 24 ALKNVSFEINEGEY--VAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI-SKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec-CcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 45566666688999 9999999999999999999987654 778887653 21112334556777777652 333445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+.++....+.++++..++ ++...+.+.++|+|+.|+ |+..-+.++++|||++
T Consensus 101 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~ 171 (271)
T PRK13632 101 VEDDIAFGLE-------NKKVPPKKMKDIIDDLAKKVGM--EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171 (271)
T ss_pred HHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 5555543322 1123445566677888888887 555666778899999888 6666788999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+...+. .+++++.+
T Consensus 172 gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l 215 (271)
T PRK13632 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVF 215 (271)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEE
Confidence 99999999999999888643 67899998875 67776644
No 226
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.67 E-value=3.1e-18 Score=145.56 Aligned_cols=184 Identities=15% Similarity=0.130 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcE--EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCR--LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~--~i~ 95 (287)
+++.++..+++|+. ++|.||||+|||||+++|++...+. .|.+|+.+.. .......+++.+.+++++.. +..
T Consensus 26 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 26 VLTNVSLSIEEGET--VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred EeeCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 45667777789999 9999999999999999999987655 6788875432 22222234556777777642 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..++.. ...+...+....+..+++..|+. +......+.++|+|+.|+ |+...++++++||
T Consensus 104 ~~tv~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE 176 (265)
T TIGR02769 104 RMTVRQIIGEPLRH------LTSLDESEQKARIAELLDMVGLR-SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176 (265)
T ss_pred CCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCCC-hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 23344444333221 11223334455677778887872 133456678899999888 6667789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
|++++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~ 225 (265)
T TIGR02769 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD 225 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe
Confidence 99999999888888899888753 789999999999999877553
No 227
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.67 E-value=3.8e-15 Score=134.08 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=145.0
Q ss_pred CCCCcc-C--cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhC---CC---------------------
Q psy2281 12 NLQKLD-F--HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELY---GP--------------------- 62 (287)
Q Consensus 12 ~~~~~~-~--~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~--------------------- 62 (287)
+|++++ | +..+......+... +. .++++|+||+|+|||+|++++++.+. +.
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~ 187 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRN 187 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHc
Confidence 466644 3 22345556655543 32 23389999999999999999987752 11
Q ss_pred --------------EEEEeCCCCCCH--HHHHHHHHHHHhcc-CCcEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281 63 --------------VIILNETDHLTR--EAQQALRRTMEKYI-TTCRLILCANSMS----QVIPAIRSRCL---CIRIPA 118 (287)
Q Consensus 63 --------------~i~ide~d~l~~--~~~~~l~~~i~~~~-~~~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~ 118 (287)
+++|||++.+.. ..+..+...+.... .+..++++++..+ .+.+.++||+. .+.+.+
T Consensus 188 ~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~ 267 (405)
T TIGR00362 188 NKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEP 267 (405)
T ss_pred CCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCC
Confidence 799999998753 34566777666543 3345677766543 36678999984 689999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhc-
Q psy2281 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE- 197 (287)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~- 197 (287)
|+.+++..+++..++..++.+++++++++++.+.|++|.+...+..+.....- .. ...+. +.+.++....+..
T Consensus 268 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~-~~-~~it~----~~~~~~L~~~~~~~ 341 (405)
T TIGR00362 268 PDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL-TG-KPITL----ELAKEALKDLLRAK 341 (405)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hC-CCCCH----HHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999855555444332110 00 11222 2333333332211
Q ss_pred ---cChhHHHHHHHHHH-----HHHhcCCCH-HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy2281 198 ---QSPKKLLEVRTRLY-----ELLVHSIPV-NVLFKYLLEGLLANCDSDLKSKSIEMAA 248 (287)
Q Consensus 198 ---~~~~~~~~~~~~~~-----~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (287)
-+.+.+..+....| ++...+-.. -....++..|+++++.+.+..++.+.++
T Consensus 342 ~~~it~~~I~~~Va~~~~v~~~~l~~~~r~~~~~~~R~~amyl~~~~~~~s~~~ig~~fg 401 (405)
T TIGR00362 342 KKEITIENIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGRAFG 401 (405)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence 12333333333333 222211111 1124588888888777666766666554
No 228
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=3e-18 Score=140.85 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=121.6
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+...... .++.+.+++++..++...+..++
T Consensus 16 ~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~tv~en 90 (211)
T cd03298 16 HFDLTFAQGEI--TAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSMLFQENNLFAHLTVEQN 90 (211)
T ss_pred ceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH---hHccEEEEecccccCCCCcHHHH
Confidence 44555578888 9999999999999999999987654 67788754211111 12346666666544333333344
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..+... .. .. .++..+.+...++..++ ++.....+.++|+|+.|+ |+...|+++++|||++++|.
T Consensus 91 l~~~~~~-----~~-~~-~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~ 161 (211)
T cd03298 91 VGLGLSP-----GL-KL-TAEDRQAIEVALARVGL--AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161 (211)
T ss_pred Hhccccc-----cc-Cc-cHHHHHHHHHHHHHcCC--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 3222110 00 11 12334456777777787 455566778999999888 66667899999999999999
Q ss_pred ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 162 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 202 (211)
T cd03298 162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence 9999999999988653 77999999999888876543
No 229
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.66 E-value=3.8e-18 Score=140.37 Aligned_cols=175 Identities=12% Similarity=0.176 Sum_probs=123.0
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+|+.+... ....++.+.+++++..++...+..++
T Consensus 16 ~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 16 EFDLNVADGEI--VAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG---LAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred eeEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc---CChhccceEEEeccCccCCCCcHHHH
Confidence 34445578888 9999999999999999999987655 67788765321 11233456666666554443344455
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..++..+ . ... ......+..+++..++ ++...+.+.++|+|+.|| |+..-|.++++|||++++|.
T Consensus 91 ~~~~~~~~-----~-~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 161 (213)
T TIGR01277 91 IGLGLHPG-----L-KLN-AEQQEKVVDAAQQVGI--ADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161 (213)
T ss_pred HHhHhhcc-----C-Ccc-HHHHHHHHHHHHHcCc--HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 43322210 0 111 1234456677777777 455566677899999888 66677899999999999999
Q ss_pred ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 162 ~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l 202 (213)
T TIGR01277 162 LLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV 202 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence 9999999999888653 77999999888888876544
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.66 E-value=2.9e-18 Score=159.15 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeC-----------------------CC----
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNE-----------------------TD---- 70 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide-----------------------~d---- 70 (287)
+.+.++..+.+|++ ++|.||||||||||+++|++.. .+. .|.+++ .+
T Consensus 15 ~l~~is~~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 15 VLKNISFTIEEGEV--LGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 45566666788999 9999999999999999999986 333 566652 10
Q ss_pred ---CC--CHHHHHHHHHHHHhccCC-cEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2281 71 ---HL--TREAQQALRRTMEKYITT-CRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144 (287)
Q Consensus 71 ---~l--~~~~~~~l~~~i~~~~~~-~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 144 (287)
.. .......+++.+.+++|+ ..++...+..+++..++. ....+..+..+.+...++..|+ ++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~ 163 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALE-------EIGYEGKEAVGRAVDLIEMVQL--SHRIT 163 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhh
Confidence 00 011112234456666664 233333344445544332 1223445566677888888887 55556
Q ss_pred HHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 145 LRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 145 ~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+.+.++|+|+.|| |+...|+++++|||++++|+.....+.+.+.++.++ |+++|+...+..++++++.+-
T Consensus 164 ~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~ 243 (520)
T TIGR03269 164 HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE 243 (520)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe
Confidence 6788999999998 667778999999999999999999999999998653 789999999999999887553
No 231
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.8e-18 Score=144.13 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~ 97 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.+++.+.- .......+++.+.+++++.. .++..
T Consensus 17 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 17 ALKGINFKAEKGEM--VALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 45556666688999 9999999999999999999987654 7788886531 11122345566888877752 22333
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..... ....+..+....+..+++..++ .+...+.+.++|+|+.|+ |+...++++++|||+
T Consensus 95 tv~e~i~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 165 (275)
T PRK13639 95 TVEEDVAFGPL-------NLGLSKEEVEKRVKEALKAVGM--EGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165 (275)
T ss_pred cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44455432211 0123455566677788888887 455566788999999888 666778899999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999999888653 78999999999989987654
No 232
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=9e-19 Score=147.68 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTREAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~ 93 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+ . -|.+++.+.-. .....+++.+.+++++..+
T Consensus 17 ~~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 17 EVLDGVNLEIPDNTI--TALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK-MDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred eeeecceeEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc-CCHHHHhccEEEEeccCcc
Confidence 355667777789999 999999999999999999998752 1 67788755321 1122345567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+...+..+++.....-+ .. .....+..+.+...++..++. +.......+.++|+|+.|| |+..-+.++
T Consensus 94 ~~~~tv~enl~~~~~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 168 (250)
T PRK14247 94 IPNLSIFENVALGLKLN----RL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL 168 (250)
T ss_pred CCCCcHHHHHHHHHHhc----cc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 54455555554332200 01 113345556677788887773 1223445577899999888 666678999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+-
T Consensus 169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 169 LADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999999988888888887533 779999999988889887553
No 233
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.9e-19 Score=162.69 Aligned_cols=185 Identities=11% Similarity=0.043 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--P--VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+++.+.-........++.+.+++|+..++..
T Consensus 19 ~il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 19 KALDNVSLKVRAGEI--VSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred EeecceeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 456677777789999 999999999999999999998874 2 7778876532111111223447777776654444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..+...+ .....+.++..+.+...++..|+ ++...+.+.++|+|+.|| |+...|+++++|||
T Consensus 97 ~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP 170 (506)
T PRK13549 97 LSVLENIFLGNEIT----PGGIMDYDAMYLRAQKLLAQLKL--DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEP 170 (506)
T ss_pred CcHHHHhhhccccc----ccCCcCHHHHHHHHHHHHHHcCC--CCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45555554332110 01112344555667788888887 444566788999999998 66677899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|+.....+.+.+.++.+. |+++|+...+..++|+++.+
T Consensus 171 t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 171 TASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence 9999999999999999888653 78999999999999987744
No 234
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.66 E-value=2.7e-18 Score=142.85 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=124.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH--HHHHHHHHHHhccCCcE--EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE--AQQALRRTMEKYITTCR--LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~--~~~~l~~~i~~~~~~~~--~i~ 95 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+..... ....+++.+.+++++.. +..
T Consensus 20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 20 ALDDVSFSIKKGET--LGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eecCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 45666667789999 9999999999999999999987655 6778875432111 12234455677776652 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
..+..+++...+.. +.....++. .......++..++. .......+.++|+|+.|+ |+...+.++++|
T Consensus 98 ~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 98 RMTIGEQIAEPLRI------HGKLSKKEARKEAVLLLLVGVGLP-EEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred cCCHHHHHHHHHHh------ccCCcHHHHHHHHHHHHHHHCCCC-hhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 33444454333221 111112222 22234566666662 134456678899999988 666678999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.++ ++++|+...+...+++++.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 999999999999999999888753 78999999888888877644
No 235
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.66 E-value=9.1e-19 Score=147.72 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+. ..+++.+.+++++..++...+
T Consensus 26 ~il~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~------~~~~~~i~~v~q~~~l~~~~t 97 (257)
T PRK11247 26 TVLNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL------AEAREDTRLMFQDARLLPWKK 97 (257)
T ss_pred ceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH------HHhhCceEEEecCccCCCCCc
Confidence 345566666688999 9999999999999999999987654 566676431 122334555555544332223
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..+ +. . .....+...++..|+ ++...+.+.++|+|+.|+ ++...+.++++|||++
T Consensus 98 v~enl~~~---------~~--~--~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~ 162 (257)
T PRK11247 98 VIDNVGLG---------LK--G--QWRDAALQALAAVGL--ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162 (257)
T ss_pred HHHHHHhc---------cc--c--hHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 33333221 11 1 123445667777777 555667788999999888 6666789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l 207 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI 207 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999998888889888643 78999999999988987654
No 236
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.66 E-value=5.8e-15 Score=121.51 Aligned_cols=157 Identities=22% Similarity=0.375 Sum_probs=115.2
Q ss_pred CCCCcc-C--cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhC---CC---------------------
Q psy2281 12 NLQKLD-F--HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELY---GP--------------------- 62 (287)
Q Consensus 12 ~~~~~~-~--~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~--------------------- 62 (287)
+|++++ | +..+....+.+.+. +. .++++|+||+|+|||+|++++++... +.
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~ 85 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD 85 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc
Confidence 677775 3 55667777776654 32 23489999999999999999987752 11
Q ss_pred --------------EEEEeCCCCCCHH--HHHHHHHHHHhccC-CcEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281 63 --------------VIILNETDHLTRE--AQQALRRTMEKYIT-TCRLILCANSMS----QVIPAIRSRCL---CIRIPA 118 (287)
Q Consensus 63 --------------~i~ide~d~l~~~--~~~~l~~~i~~~~~-~~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~ 118 (287)
+++||+++.+... .+..+...++.... ...++++++..+ .+.+.++||+. .+.+.+
T Consensus 86 ~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 86 GEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp TSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred ccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCC
Confidence 9999999988754 37778887777643 346777775543 36778999984 688999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168 (287)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~ 168 (287)
|+.++..+++.+.+...|+.+++++.+++++...+++|.....+.++...
T Consensus 166 pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp --HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777776543
No 237
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=1.7e-17 Score=123.85 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=128.5
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
.++..+.+|++ +-+.||+|||||||+.-+.+.+.+. -+.++|.+.-. ..+-.+.++..+|+.-++...++
T Consensus 20 ~~n~Tia~Gei--vtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~---lPa~qRq~GiLFQD~lLFphlsV 94 (213)
T COG4136 20 NVNFTIAKGEI--VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM---LPAAQRQIGILFQDALLFPHLSV 94 (213)
T ss_pred eeeEEecCCcE--EEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc---cchhhhheeeeeccccccccccc
Confidence 45556678999 9999999999999999999998876 78888765311 12234678889999999999999
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..++- .....+..++.....+++.|+ +....+....+|||+..| ++...|+.+++|||++.
T Consensus 95 g~Nl~fAlp--------~~~KG~aRr~~a~aAL~~~gL--~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 95 GQNLLFALP--------ATLKGNARRNAANAALERSGL--DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred ccceEEecC--------cccccHHHHhhHHHHHHHhcc--chhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 999876542 234455677777788888888 777888899999998766 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLL 204 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~ 204 (287)
+|...+..+.+.++.-+.. ++++|+..++.
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9987777777666655444 77888887765
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2e-18 Score=145.78 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCC-HHHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLT-REAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|++ ++|.||||+|||||++++++...+ ..|.+|+.+.-. ......+++.+.+++++..
T Consensus 18 ~~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 18 HVIKGVDLKIPQNGV--FALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 456667777789999 999999999999999999998753 167888765211 1111234555777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++...+..+++.....-+ .+. .+.++....+...++..++. +.......+.++|+|+.|| |+...|++
T Consensus 96 ~~~~~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 170 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLN----GLV-KSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI 170 (253)
T ss_pred cCCCCcHHHHHHHHHHhc----Ccc-CCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 544444555554332100 010 13344455666777777762 1233455678899999888 66667889
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 171 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEE
Confidence 9999999999999888888888887643 77999999999999987655
No 239
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.4e-18 Score=150.62 Aligned_cols=172 Identities=18% Similarity=0.184 Sum_probs=125.4
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++..+++|++ ++|.||||||||||+++|++...++ .|.+++.+..... .....++.+.+++|+..++...+..
T Consensus 17 vsl~i~~Ge~--~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 17 VNLTLPAQGI--TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 4444578888 9999999999999999999987655 6778875422110 0112344567777776555544555
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++..++. . ...+.+...++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++++
T Consensus 95 enl~~~~~---------~----~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 95 GNLRYGMA---------K----SMVAQFDKIVALLGI--EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHhhhh---------h----hhHHHHHHHHHHcCC--chhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 55543321 1 123446667777777 566677788999999888 777778999999999999
Q ss_pred cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
|......+.+.+.++.++ ++++|+.+.+..++|+++.+-
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~ 203 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLE 203 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEe
Confidence 999998888899888764 789999999999999877553
No 240
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=5.4e-18 Score=144.61 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=129.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE-EEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL-ILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~-i~~~~ 98 (287)
+.+.++..+++|++ +.|.||||+|||||+++|++.+.+. .|.+++.+.-.......+++.+.++++++.. ++..+
T Consensus 17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 17 ALENINLVIKKGEY--IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 45566666788999 9999999999999999999987655 7788876532111123345567777766532 33334
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+..+..+.+...++..|+ .+.....+..+|+|+.|+ |+...|.++++|||++
T Consensus 95 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 165 (274)
T PRK13644 95 VEEDLAFGPE-------NLCLPPIEIRKRVDRALAEIGL--EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165 (274)
T ss_pred HHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHCCC--HHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4444432211 1123555666677788888887 455566778899999888 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. ++++|+...+. .++++..+
T Consensus 166 gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l 208 (274)
T PRK13644 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVM 208 (274)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEE
Confidence 99999988888888888654 77999999885 58887654
No 241
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=8.8e-18 Score=132.64 Aligned_cols=188 Identities=17% Similarity=0.142 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc--EEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC--RLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~--~~i~~ 96 (287)
.+...++..+.+|++ +.+.|.||+||||+++++++.+.++ .|+||++|. +.-....-..++..++|++ ..+..
T Consensus 20 ~~l~~~sL~I~~g~F--vtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dV-tk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 20 RALNGLSLEIAEGDF--VTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV-TKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHhcCceeecCCce--EEEEcCCCccHHHHHHHhhCccccCCceEEECceec-ccCCHHHHhhHHHHHhcchhhCCccc
Confidence 445566666788999 9999999999999999999999877 899998774 2222222233466666665 24455
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH------HHHhhcCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC------EASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l------~~~~~~de 170 (287)
.+..+|+.-+- +|.....+..--....++.....+...++.+++...+.+.-+|||+ |+|+..+ |+++++||
T Consensus 97 lTieENl~la~-~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQ-RQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 97 LTIEENLALAE-SRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQ-RQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccHHHHHHHHH-hcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchH-HHHHHHHHHhcCCCcEEEecc
Confidence 56667765542 3443323333223456666777777777777787888888899995 5544433 67888999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.++||...+.+++.-.+++++ ++++|+++++..+.+++..+
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImL 222 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIML 222 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEE
Confidence 99999999999999888888877 88999999999999998754
No 242
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=1e-14 Score=120.66 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=101.1
Q ss_pred CCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------------------------------
Q psy2281 35 FPH-LLFYGPSGAGKKTRIMALLKELYGP--------------------------------------------------- 62 (287)
Q Consensus 35 ~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------------------------------- 62 (287)
.|| ++|+||.|+||.+++.++++.+.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 466 9999999999999999999887532
Q ss_pred -----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC----------CHHHHHHH
Q psy2281 63 -----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP----------THEEIVSV 127 (287)
Q Consensus 63 -----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~----------~~~~~~~~ 127 (287)
+++|+++|.++..+.++|++.+|+|++++.|+++++..+.++++++|||+.+.|+++ ++.++.+.
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~ 165 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYI 165 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999877 33333333
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q psy2281 128 LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164 (287)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~ 164 (287)
+.. ..++ ++ .++..+.|+..+|+.....
T Consensus 166 L~~---~~~~--d~----~i~~~a~g~~~~a~~l~~~ 193 (261)
T PRK05818 166 LLS---FYSV--DE----QLQAYNNGSFSKLKNIIET 193 (261)
T ss_pred HHH---ccCc--cH----HHHHHcCCCHHHHHHHHHH
Confidence 322 2232 33 6778899999999998884
No 243
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.66 E-value=1.5e-18 Score=145.78 Aligned_cols=188 Identities=14% Similarity=0.052 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++.. .+. .|.+++.+.-........+..+.+++++..++...
T Consensus 15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 15 ILKGVNLTVKKGEI--HAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEeccceEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 45566667788999 9999999999999999999984 222 77888765321111111122255556665544333
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHH-HHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLA-QQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~-~~s~G~~r~-----al~~l~~~~~~de 170 (287)
+..+++................+..+..+.+...++..++ ++.. .+.+. .+|+|+.|+ |+...+.++++||
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 170 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM--DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE 170 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC--chhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 3333333222111000000112334455667778888887 4332 34454 499999888 6667789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l 213 (287)
|++++|......+.+.+.++.+. ++++|+...+... +++++.+
T Consensus 171 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l 218 (243)
T TIGR01978 171 IDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL 218 (243)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence 99999999999999999888653 7799999999887 6877644
No 244
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.65 E-value=1.9e-18 Score=143.87 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=122.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||||||||+++|++.+.+. .|.+++.+...........+.+.+++++..++...+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 15 ILRGVSLEVPKGEV--TCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred EecceeeEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 45566666788999 9999999999999999999988654 6778875532211112223456777777655443344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... .......+ .....++..+. ++....+.+.++|+|+.|+ |+...+.++++|||+++
T Consensus 93 ~~~l~~~~~-------~~~~~~~~---~~~~~l~~~~~-l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~ 161 (230)
T TIGR03410 93 EENLLTGLA-------ALPRRSRK---IPDEIYELFPV-LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161 (230)
T ss_pred HHHHHHHHH-------hcCcchHH---HHHHHHHHHHh-HHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 444433221 11111122 22333443331 1344456677899999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 205 (230)
T TIGR03410 162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVM 205 (230)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999888752 78999999999888887654
No 245
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=8.1e-18 Score=144.16 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH---HHHHHHHHHHHhccCCcE-EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR---EAQQALRRTMEKYITTCR-LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~---~~~~~l~~~i~~~~~~~~-~i~ 95 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+.-.. .....+++.+.+++++.. .++
T Consensus 22 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 22 ALFDVNLTIEDGSY--TAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 45556666688999 9999999999999999999987655 677887542110 112334556777777642 222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
..+..+++..... ....+.++..+.+...++..++ .+ ...+.+.++|+|+.|| |+...+.++++|
T Consensus 100 ~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 170 (280)
T PRK13649 100 EETVLKDVAFGPQ-------NFGVSQEEAEALAREKLALVGI--SESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD 170 (280)
T ss_pred cccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--ChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 2344444433221 1123445556667777777777 43 3456678899999888 666678999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 218 (280)
T PRK13649 171 EPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL 218 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 999999999988888888888653 77999999998888887654
No 246
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.2e-17 Score=137.60 Aligned_cols=175 Identities=17% Similarity=0.124 Sum_probs=121.3
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
.++..+.+ +. ++|.||||+|||||++++++.+.+. .|.+++.+..... .....++.+.+++++..++...+.
T Consensus 16 ~vsl~i~~-e~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EV--TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-ee--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 44555567 77 9999999999999999999987654 6777775422111 112234456666666544333334
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... . .......+.+.+.++..++ ++...+.+.++|+|+.|+ |+...|+++++|||+++
T Consensus 93 ~~~l~~~~~-------~--~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 161 (214)
T cd03297 93 RENLAFGLK-------R--KRNREDRISVDELLDLLGL--DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA 161 (214)
T ss_pred HHHHHHHHh-------h--CCHHHHHHHHHHHHHHcCC--HhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 344332211 0 1223334556777777777 555667788999999888 66777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+.+.+..++++++.+
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (214)
T cd03297 162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 9999999999999888653 77999999998888876543
No 247
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.5e-18 Score=146.76 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=127.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.-........+..+.+++++..++...+.
T Consensus 20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 20 AVNNVNLEVREQEI--VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEeeeeEEcCCeE--EEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 45566666788988 9999999999999999999987655 7778875432111111112224455666555444455
Q ss_pred CCCCcHHHhccc------ceeecC--CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 100 MSQVIPAIRSRC------LCIRIP--APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 100 ~~~l~~~l~sr~------~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.+++..+...+. ..+... .....+....+...++..|+ .+...+.+.++|+|+.|| |+..-|.++
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 175 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 555443321110 000000 01112333456666777776 556677788999999888 667778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 227 (255)
T PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227 (255)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999888653 77999999999999987654
No 248
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=5.8e-18 Score=135.52 Aligned_cols=193 Identities=16% Similarity=0.100 Sum_probs=138.8
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
+++.-+|..+++..++..++.|++ +++.||||+||||++++|++...+. .|.+++.|..........+.-+.++++
T Consensus 8 ~l~~~YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 8 NLSAGYGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred eEeecccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 445556666777788888899999 9999999999999999999998865 889998875443444555677999999
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
...++...|+.+|+.-+...+- .+......++++.+-+-. +.+...+.-..+|||+.|. |++..|+
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~--------~~~~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARR--------DKEAQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred cccchhhCcHHHHHhhhhhccc--------ccccccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 9999999999999876533111 000111112222111100 0112222334466776555 8999999
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
++++|||+.++.+....++.+.|.++.++ ++++++...+.++.|+.|.+-.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~ 212 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN 212 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC
Confidence 99999999999999999999999999875 6688888899999999885533
No 249
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=9.1e-19 Score=148.04 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=125.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..+....+.
T Consensus 17 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 17 ILNDLSLSLPTGKI--TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI-SMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEeeeeeEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh-HHCCHHHHhhheEEecccCCCCCCccH
Confidence 45566666788998 9999999999999999999987644 677777542 111112334556777766543322233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+....... +.... ++....+...++..++ ++.....+.++|+|+.|| |+...|.++++|||+++
T Consensus 94 ~~~i~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 168 (255)
T PRK11231 94 RELVAYGRSPWLSL--WGRLS-AEDNARVNQAMEQTRI--NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168 (255)
T ss_pred HHHHHhccchhhhh--ccCCC-HHHHHHHHHHHHHcCC--HHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 33332211000000 11111 2334456667777777 455566778899999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+...+.+++++++.+
T Consensus 169 LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 169 LDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 9999988888888887653 77999999999999988755
No 250
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.65 E-value=6.2e-18 Score=147.44 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=122.1
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281 40 FYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117 (287)
Q Consensus 40 l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 117 (287)
|.||||||||||+++|++...+. .|.+|+.+..... ...+.+.+++++..++...+..+++..+++ +.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~---~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~ 70 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP---PHLRHINMVFQSYALFPHMTVEENVAFGLK-------MR 70 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEecCccccCCCcHHHHHHHHHh-------hc
Confidence 57999999999999999988755 7788875432111 123456777777665555566666655433 22
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH
Q psy2281 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK 192 (287)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~ 192 (287)
..+..+..+.+...++..++ ++...+.+.++|+|+.|| |+...+.++++|||++++|......+.+.+.++.+
T Consensus 71 ~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 71 KVPRAEIKPRVLEALRLVQL--EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred CCCHHHHHHHHHHHHHHcCC--cchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 34455566677788888887 555667788999999888 77777899999999999999999999999988875
Q ss_pred H-----HHhccChhHHHHHHHHHHHH
Q psy2281 193 L-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 193 ~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+ ++++|+...+..++|+++.+
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl 174 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIM 174 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 78999999999999988755
No 251
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.6e-18 Score=143.23 Aligned_cols=178 Identities=16% Similarity=0.193 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+...... .++.+.+++++..++...+.
T Consensus 15 il~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 15 ALDGVSLDIKEGEF--FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP---HKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh---hhcceEEEecccccCCCCcH
Confidence 45566666788988 9999999999999999999998755 67778754321111 13346666666554433344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+.......+...++..|+ ++.....+..+|+|+.|+ |+..-++++++|||+++
T Consensus 90 ~~nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 90 FENIAFGLR-------LKKLPKAEIKERVAEALDLVQL--EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 444433222 2233444555566777777787 555666778899999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+...+...+|+++.+
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM 204 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999888753 77999999998888887654
No 252
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7e-18 Score=143.67 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++.. ++...+
T Consensus 24 ~l~~isl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 24 TLKDVSFNIPKGQW--TSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI-TDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC-CcCCHHHHHhheeEEEeChHHhccccc
Confidence 45566666688999 9999999999999999999987654 778888653 21112334556777776653 333223
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ......++..+.+..+++..++ .+.....+.++|+|+.|+ |+...+.++++|||++
T Consensus 101 v~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 101 VKYDVAFGLE-------NHAVPYDEMHRRVSEALKQVDM--LERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred HHHHHHhhHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 3333322221 1123445555667777887777 455556678899999888 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+...+.. +++++.+
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l 215 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVM 215 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEE
Confidence 99999999998889888653 779999988875 7877644
No 253
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.65 E-value=6e-18 Score=140.84 Aligned_cols=174 Identities=17% Similarity=0.168 Sum_probs=118.2
Q ss_pred HHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEeCC
Q psy2281 28 NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCANS 99 (287)
Q Consensus 28 ~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~~~ 99 (287)
..+++|++ ++|.||||+|||||+++|++...+ . .|.+++.+. ... ....+.+.+++++.. +....+.
T Consensus 7 ~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~-~~~--~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 7 LSLKRGEV--LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL-LPL--SIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred EEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEec-hhh--hhhhheeEEEecCchhhcCcccCH
Confidence 34467888 999999999999999999999876 3 778888653 211 111234566665542 1111122
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
.+++...+. .......+..+.+...++..++.-. +...+.+.++|+|+.|+ |+...|+++++|||++
T Consensus 82 ~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 82 GNHAIETLR-------SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred HHHHHHHHH-------HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 222222211 1111123445567778888887310 33455678899999888 6666788999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM 199 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999888888888888653 77999999999988987755
No 254
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.65 E-value=4.9e-18 Score=143.79 Aligned_cols=184 Identities=16% Similarity=0.095 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC-----C--CCHHHHHH-HHHHHHhccCC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD-----H--LTREAQQA-LRRTMEKYITT 90 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d-----~--l~~~~~~~-l~~~i~~~~~~ 90 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+ . ........ .++.+.+++++
T Consensus 20 ~il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 20 KGCRDVSFDLYPGEV--LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred eeeeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 345566666688999 9999999999999999999987655 77788765 2 22221111 23346666666
Q ss_pred cE--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 91 CR--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 91 ~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
.. +....+..+++...+.. +......+....+...++..++. .+...+.+.++|+|+.|| |+...|
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~qrl~laral~~~p 170 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMA------VGARHYGDIRATAGDWLERVEID-AARIDDLPTTFSGGMQQRLQIARNLVTHP 170 (258)
T ss_pred cccccCccccHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHcCCC-hhHHhCCCccCCHHHHHHHHHHHHHhcCC
Confidence 42 22222223344332211 11112234455666777777773 124456678899999888 677778
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 171 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l 225 (258)
T PRK11701 171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225 (258)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999888888888887653 78999999999999987755
No 255
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.4e-18 Score=145.63 Aligned_cols=183 Identities=14% Similarity=0.096 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+++.+.... .....+++.+.+++++..+
T Consensus 27 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 27 ALKNVSMQIPKNSV--TALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 45555666688998 999999999999999999998642 2 677887542211 1122345567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++..... ....+.++..+.+..+++..++. +.+.....+..+|+|+.|| |+...|.++
T Consensus 105 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 176 (258)
T PRK14268 105 FP-MSIYDNVAYGPR-------IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKII 176 (258)
T ss_pred Cc-ccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 44 455566543321 11234445555677777777762 1223345567899999888 666778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 177 llDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~ 227 (258)
T PRK14268 177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFL 227 (258)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 999999999999998888888887543 679999999999999887553
No 256
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2e-18 Score=159.16 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.-.......+++.+.+++|+..++...+.
T Consensus 13 il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (491)
T PRK10982 13 ALDNVNLKVRPHSI--HALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90 (491)
T ss_pred eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence 45566666788999 9999999999999999999987655 7778875532111122334456667776554444444
Q ss_pred CCCCcHHHhcccceeecCC--CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 100 MSQVIPAIRSRCLCIRIPA--PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
.+++..+.. .+.. .+.++..+.+...++..++ +....+.+.++|+|+.|| |+...|.++++|||+
T Consensus 91 ~~~l~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 91 MDNMWLGRY------PTKGMFVDQDKMYRDTKAIFDELDI--DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred HHHhhcccc------cccccccCHHHHHHHHHHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 455432211 0111 2334455667778888887 344566788999999988 667778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999998888888888654 78999999999999887644
No 257
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.7e-18 Score=146.65 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+ . .|.+|+.+.... .....+++.+.+++++..
T Consensus 18 ~~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 18 HAVEDVNLNIEPRSV--TAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 345566666688998 999999999999999999998742 2 777887653110 011234455777776655
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++...+..+++...... ....+.++..+.+..+++..++. +.+.....+.++|+|+.|| |+...+++
T Consensus 96 ~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKL------NGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDV 169 (258)
T ss_pred cCCCCcHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 44434444554433220 01123445556667777777762 2234456677899999888 66677899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+...+|+++.+
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 170 LLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999988888888887543 77999999999999987654
No 258
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.9e-18 Score=144.14 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|+. ++|.||||+|||||++++++...+ ..|.+|+.+.... .....+++.+.+++++..
T Consensus 21 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 21 KALNNINIKILKNSI--TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred eeecceeeEEcCCCE--EEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 355666777789999 999999999999999999998764 1677887542111 112334566777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++. .+..+++.....- ....+..+..+.+...++..++. +.+.......++|+|+.|+ ++...|++
T Consensus 99 ~~~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 171 (254)
T PRK14273 99 PFL-MSIYDNISYGPKI------HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNV 171 (254)
T ss_pred ccc-CcHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 542 4555555433210 01123344556667777776652 1233445567899999888 66667899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 172 ILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFF 222 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999998888888888543 67999999999989987755
No 259
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.65 E-value=3.7e-18 Score=144.88 Aligned_cols=188 Identities=15% Similarity=0.114 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCH----HHHHHHHHHHHhccCCc
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTR----EAQQALRRTMEKYITTC 91 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~----~~~~~l~~~i~~~~~~~ 91 (287)
.+++.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.... .....+++.+.+++++.
T Consensus 18 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 18 QALHAVDLNIHHGEM--VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred EEEecceEEEcCCcE--EEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 355666667788999 9999999999999999999988642 677887543110 11233456678888776
Q ss_pred EEEEEeCCCCCCcHHHhcccceee--cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 92 RLILCANSMSQVIPAIRSRCLCIR--IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 92 ~~i~~~~~~~~l~~~l~sr~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
.++...+..+++..+......... +.... ++....+...++..|+ ++...+.+..+|+|+.|| |+...|+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFT-REQKQRALQALTRVGM--VHFAHQRVSTLSGGQQQRVAIARALMQQAK 172 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhccccc-HHHHHHHHHHHHHcCC--HHHHhCCccccCHHHHHHHHHHHHHhcCCC
Confidence 655544555554332110000000 11112 2344566778888787 455566778899999888 6777789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|||++++|......+.+.+.++.++ |+++|+...+..++++++.+
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999998753 77999999999999988755
No 260
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.2e-18 Score=148.07 Aligned_cols=186 Identities=12% Similarity=-0.009 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..++...+
T Consensus 25 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKV--TGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL-ESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh-hhCCHHHHhhheEEeccCCCCCCCcc
Confidence 355666677788999 9999999999999999999987654 677887652 11112234455666666644443333
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ................+...++..++ ++.....+.++|+|+.|| |+...++++++|||++
T Consensus 102 v~e~l~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~ 176 (265)
T PRK10575 102 VRELVAIGRY---PWHGALGRFGAADREKVEEAISLVGL--KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 (265)
T ss_pred HHHHHHhCcc---cccccccCCCHHHHHHHHHHHHHcCC--HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3344322110 00000001112234456677777777 444556677899999888 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 177 ~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~ 222 (265)
T PRK10575 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR 222 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999898999888653 789999999999999877553
No 261
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.6e-17 Score=156.76 Aligned_cols=184 Identities=17% Similarity=0.146 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCR--LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~--~i~ 95 (287)
+++.++..+.+|++ +.|.||||||||||+++|++.+.+. .|.+++.+. ++......+++.+.+++|+.. +..
T Consensus 339 ~l~~vs~~i~~Ge~--~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 339 AVEKVSFDLWPGET--LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred EEeeeEeEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 34555556688988 9999999999999999999988655 677777542 222222234455777777642 333
Q ss_pred EeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
..+..+++..++. +.. .+..+..+.+..+++..|+. .+...+++.++|+|+.|| |+...++++++|
T Consensus 417 ~~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~~L~~~gL~-~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 417 RQTVGDSIMEPLR-------VHGLLPGKAAAARVAWLLERVGLL-PEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CCCHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHHHcCCC-HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3334444444332 111 23445556777888888872 234567788999999998 666778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
||++++|......+.+.+.++.++ |+++|+...+..++|+++.+..
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999998764 7899999999999999875533
No 262
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.4e-17 Score=143.24 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC----HHHHHHHHHHHHhccCCcEE-E
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT----REAQQALRRTMEKYITTCRL-I 94 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~----~~~~~~l~~~i~~~~~~~~~-i 94 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++.+.+. .|.+++.+... ......+++.+.+++++..+ +
T Consensus 26 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 26 ALNNTSLTFKKNKV--TCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 45566666688999 9999999999999999999987654 67778755211 01123344556666666421 1
Q ss_pred EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
+..+..+++..+.. ......++..+.+...++..++. .+...+.+.++|+|+.|| |+...|.++++|
T Consensus 104 ~~~tv~enl~~~~~-------~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD 175 (289)
T PRK13645 104 FQETIEKDIAFGPV-------NLGENKQEAYKKVPELLKLVQLP-EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175 (289)
T ss_pred hhhHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCC-hhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 12233444432211 11234445555667777777762 133456678899999888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
||++++|......+.+.+.++.+. ++++|+.+.+..++++++.+-
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~ 225 (289)
T PRK13645 176 EPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225 (289)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999898889888653 789999999999999877553
No 263
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.2e-17 Score=143.16 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCR-LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~ 95 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++.+.+. .|.+++.+... .....+++.+.+++++.. +++
T Consensus 22 ~l~~v~l~i~~Ge~--~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~-~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 22 ALNDISFSIPRGSW--TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA-KTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc-CCHHHHHhheEEEEECHHHhhc
Confidence 45555566688988 9999999999999999999987542 67888765322 112234556777777653 444
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..... ....+.++..+.+...++..|+ .+.....+..+|+|+.|+ |+..-|.++++||
T Consensus 99 ~~tv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 99 GATVGDDVAFGLE-------NRAVPRPEMIKIVRDVLADVGM--LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred cCCHHHHHHhhHH-------hCCCCHHHHHHHHHHHHHHCCC--hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4555566543322 1234566666778888888887 555667788999999888 7777789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|......+.+.+.++.++ ++++|+...+. .+++++.+
T Consensus 170 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l 216 (282)
T PRK13640 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVL 216 (282)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE
Confidence 99999999999998999888753 77899998874 68887654
No 264
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.6e-18 Score=147.23 Aligned_cols=186 Identities=13% Similarity=0.073 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+. .......+.+.+.+++++..++...+
T Consensus 21 ~~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHF--TAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI-QHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh-hhCCHHHHhhheEEeeccCcCCCCCc
Confidence 356667777789999 9999999999999999999987654 677776542 11112233455777777655443333
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++.......... +.... +.....+...++..++ ++...+.+.++|+|+.|+ |+..-|+++++|||++
T Consensus 98 v~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 172 (265)
T PRK10253 98 VQELVARGRYPHQPL--FTRWR-KEDEEAVTKAMQATGI--THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172 (265)
T ss_pred HHHHHHhCccccccc--ccCCC-HHHHHHHHHHHHHcCC--HHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 333332211000000 11111 2334456677777777 455567788999999888 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 173 gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 218 (265)
T PRK10253 173 WLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR 218 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999898999888653 779999999999999887553
No 265
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.64 E-value=3.1e-17 Score=135.68 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=128.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++.+.+. .|.+|+.+.. +.......++.+.+.+++..++...
T Consensus 20 il~~vs~~i~~G~~--~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 20 VLFDINLEINPGEI--VILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 45566666688988 9999999999999999999987654 6777875431 1211223456677777776655544
Q ss_pred CCCCCCcHHHhcccceeecC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 98 NSMSQVIPAIRSRCLCIRIP-APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
+..+++..... +. ..+.++....+...++..|+ .+.....+.++|+|+.|+ ++..-|.++++|||
T Consensus 98 t~~~n~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 98 TARQNVQMALE-------LQPNLSYQEARERARAMLEAVGL--GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CHHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 55555543321 22 23455666677888888887 555667788999999888 66677889999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~ 211 (287)
++++|......+.+.+.++.++ ++++|+.+ +..++|++.
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~ 212 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIV 212 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEE
Confidence 9999999988888888888753 77899986 445666554
No 266
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=9.6e-18 Score=149.83 Aligned_cols=196 Identities=14% Similarity=0.082 Sum_probs=156.8
Q ss_pred CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
+++.+-+|.-.+++.++..+.+|++ ..|.|.||+|||||+++|++.+.++ .|++|+...-......+...-+..+.
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GEV--~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGEV--HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred ecceEEcCCceeeccceeEEeCceE--EEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 4455556666677778888899999 9999999999999999999998877 89999865433344556667788899
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
|+..+++..++.+|+..+ |-..-.|...+...+.+...+.++..++..+ ....+.++|.|+.|. |+....
T Consensus 90 QEl~L~p~LsVaeNifLg---re~~~~~g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 90 QELSLVPNLSVAENIFLG---REPTRRFGLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred echhccCCccHHHHhhcc---cccccCCCccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 999999988888887432 2211115567889999999999999998633 566778888886665 777777
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++++||||++++......+.+.++++.++ ++++|..+++.+++|++..+
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 889999999999988888888899999877 88999999999999998743
No 267
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.64 E-value=1.4e-18 Score=146.92 Aligned_cols=186 Identities=13% Similarity=0.027 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++.+.+. .|.+++.+. .......+++.+.+++++..+.+..+.
T Consensus 16 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 16 IVDGVDVTAPPGSL--TGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL-HGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEc-ccCCHHHHhhheEEecccCccCCCCCH
Confidence 45566666688999 9999999999999999999987654 677887542 111122334456777776544443344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++...... .. .+......+..+.+.+.++..++ .+.....+.++|+|+.|+ |+..-++++++|||+++
T Consensus 93 ~e~l~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 167 (256)
T TIGR03873 93 RDVVALGRIP-HR--SLWAGDSPHDAAVVDRALARTEL--SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNH 167 (256)
T ss_pred HHHHHhcchh-hh--hhccCCCHHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 4444321100 00 01011112333466777777777 444566778899999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHh
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+-.
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 168 LDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999988888888888653 7799999999999998875533
No 268
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.1e-18 Score=145.15 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+++|++ ++|.||||+|||||+++|++... +. .|.+++.+.... .....+++.+.+++++..
T Consensus 27 ~il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 27 HALKNINLDIAKNQV--TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred EEeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 345666666788999 99999999999999999999874 11 677887553211 112344566777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++. .+..+++...... +...+.++..+.+...++..++. +.....+...++|+|+.|| |+...+++
T Consensus 105 ~~~-~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 177 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRL------FEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEV 177 (260)
T ss_pred cCc-CcHHHHHhhhHhh------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 443 3444444332210 11234455556677778877762 2233445567899999888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 178 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 178 LLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999888888888887543 77999999998888887654
No 269
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.64 E-value=1.9e-18 Score=140.79 Aligned_cols=173 Identities=16% Similarity=0.079 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+.... ...+++.+.+++++..++...+.
T Consensus 15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 15 LFSGLSFTLAAGEA--LQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ--RDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--cHHhhhheEEeccccccCCCcCH
Confidence 45566666788999 9999999999999999999987654 677777553211 12344456666655444333333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++.... ... ..+.+...++..++ ++.....+.++|+|+.|+ |+...+.++++|||+++
T Consensus 91 ~e~l~~~~----------~~~---~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 91 LENLRFWH----------ADH---SDEQVEEALARVGL--NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHhhc----------ccc---cHHHHHHHHHHcCC--hhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 33332210 000 12345566666677 444556678899999888 67777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+...+...+++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999988888888887654 77999998888888776543
No 270
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.6e-17 Score=128.34 Aligned_cols=192 Identities=17% Similarity=0.048 Sum_probs=133.6
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
++.-....+...+.++.-+..|+. ..|.||||+||||+++++++++.++ .+.+++.+.-+. ...++.+.-.-.+|
T Consensus 6 nls~~~~Gr~ll~~vsl~~~pGev--~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~-~~~~lA~~raVlpQ 82 (259)
T COG4559 6 NLSYSLAGRRLLDGVSLDLRPGEV--LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW-PPEELARHRAVLPQ 82 (259)
T ss_pred eeEEEeecceeccCcceeccCCcE--EEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC-CHHHHHHHhhhccc
Confidence 333334455667777777889999 9999999999999999999999866 777887663221 12334444455566
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
++.+-|..++.+-+..+.. .... -...+-.++....+...++ +..+-+..-.+|||+.+| .+..+.
T Consensus 83 ~s~laFpFtv~eVV~mGr~------p~~~g~~~~e~~~i~~~ala~~d~--~~la~R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 83 NSSLAFPFTVQEVVQMGRI------PHRSGREPEEDERIAAQALAATDL--SGLAGRDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred CcccccceEHHHHHHhccc------ccccCCCchhhHHHHHHHHHHcCh--hhhhccchhhcCchHHHHHHHHHHHHHcc
Confidence 7665554444443322211 1111 1223555667777777776 667777788899999988 343332
Q ss_pred ------HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281 164 ------ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 164 ------~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++++|||++++|..-.....+..++++.+ +.+-||.+....++|++.-+-
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~ 215 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH 215 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee
Confidence 366889999999988777888888888876 668899999999999988553
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=1.5e-18 Score=160.50 Aligned_cols=178 Identities=9% Similarity=0.060 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+.+|++ ++|.||||+|||||+++|++.+.+. .|.+++.+.-........++.+.+++++..++...+
T Consensus 25 ~il~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 25 EVLKGIDFTLHAGEV--HALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 345566666788999 9999999999999999999988655 677787542111111111123555566544333333
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++.... ....+..+.+...++..|+ ++...+.+.++|+|+.|| |+...|.++++|||++
T Consensus 103 v~e~l~~~~-----------~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 103 VKENILFGL-----------PKRQASMQKMKQLLAALGC--QLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred HHHHhhccc-----------ccchHHHHHHHHHHHHcCC--CccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 333332211 1122344566777888887 455567788999999988 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. |+++|+.+.+..++++++.+
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999888654 78999999999999988754
No 272
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.8e-17 Score=143.62 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDH--LTREAQQALR-RTMEKYITTCR 92 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~ 92 (287)
+++.++..+.+|+. +.|.||||||||||+++|++...+ . .|.+|+.+. +.......++ +.+.+++|+..
T Consensus 22 ~l~~vsl~i~~Ge~--~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 22 AVDRVSMTLTEGEI--RGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 45666677789999 999999999999999999998752 1 678888653 2232222222 24677777654
Q ss_pred --EEEEeCCCCCCcHHHhcccceeecCC---CCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHH
Q psy2281 93 --LILCANSMSQVIPAIRSRCLCIRIPA---PTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILM 161 (287)
Q Consensus 93 --~i~~~~~~~~l~~~l~sr~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~ 161 (287)
+....+..+++...+... .+.. ....+..+.+.+.++..|+.-. +....++.++|+|+.|| |+..
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGW----TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred hhcCccccHHHHHHHHHHhh----hccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence 222223333333322110 0110 1223445667788888888421 22456788999999988 7777
Q ss_pred HHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
.|+++++|||++++|......+.+.+.++.++ |+++|+...+..++|+++.+..
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 78999999999999999999999999998764 7899999999999998875533
No 273
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.3e-18 Score=159.05 Aligned_cols=184 Identities=10% Similarity=0.016 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.........+++.+.+++|+..++...+.
T Consensus 19 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK11288 19 ALDDISFDCRAGQV--HALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96 (501)
T ss_pred EEeeeeEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence 45566666788999 9999999999999999999987654 6777775431111122334456666666544443344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+...+ .+...+..+..+.+...++..|+ ++...+.+.++|+|+.|| |+...+.++++|||+++
T Consensus 97 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 170 (501)
T PRK11288 97 AENLYLGQLPH----KGGIVNRRLLNYEAREQLEHLGV--DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170 (501)
T ss_pred HHHHHhccccc----ccCCCCHHHHHHHHHHHHHHcCC--CCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 44443321100 01112344556677788888887 334456788999999988 67777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. |+++|+.+.+..++++++.+
T Consensus 171 LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 171 LSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998888888888654 78999999999998887644
No 274
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.63 E-value=2.1e-17 Score=138.18 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++.+.+. .+.+|+.+..... ..++.+.++++...++...+.
T Consensus 15 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 15 ALDDVNLEVPTGSL--VALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---ARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---hhhcCEEEEecChhhccCCcH
Confidence 44455555678888 9999999999999999999987654 6778875532111 113345566666554443344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+.....+.+.+.++..++ .+...+.+..+|+|+.|+ ++...|.++++|||+++
T Consensus 90 ~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 90 RDNIAFGLE-------IRKHPKAKIKARVEELLELVQL--EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred HHHHHhHHH-------hcCCCHHHHHHHHHHHHHHcCC--HhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 444432221 2233444445666777888777 455556677899999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS 205 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence 9999999898889887653 779999999999999887553
No 275
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.4e-18 Score=143.30 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=122.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus 18 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (241)
T PRK14250 18 ILKDISVKFEGGAI--YTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI-KTIDVIDLRRKIGMVFQQPHLFE-GTV 93 (241)
T ss_pred eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh-hhcChHHhhhcEEEEecCchhch-hhH
Confidence 45566666788998 9999999999999999999987655 777887652 11112234455666666654432 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
.+++..... +.. . ....+...++..++ + +...+.+.++|+|+.|+ |+...|+++++|||++
T Consensus 94 ~e~l~~~~~-------~~~--~--~~~~~~~~l~~~~l--~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 94 KDNIEYGPM-------LKG--E--KNVDVEYYLSIVGL--NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred HHHHhcchh-------hcC--c--HHHHHHHHHHHcCC--CHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 333221110 111 1 12345566677777 4 33456678899999888 6667789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|......+.+.+.++.++ ++++|+...+..++++++.+-
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~ 206 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN 206 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe
Confidence 99999888888888888653 789999999999999877553
No 276
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6e-18 Score=142.72 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=128.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ ..|.+|+.+.... .....+++.+.+++++..+
T Consensus 19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 19 ALNDINLPIYENKI--TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 45566666688999 999999999999999999998642 2678887653211 1122345567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..... +... +..+....+...++..++. +.+.......++|+|+.|+ |+...+.+
T Consensus 97 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 168 (251)
T PRK14270 97 FP-MSIYDNVAYGPR-------IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDV 168 (251)
T ss_pred CC-CcHHHHHHhHHH-------hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 43 445555543221 1111 3344555666777777762 2233445567899999888 66667899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+++|||++++|......+.+.+.++.+. ++++|+.+.+..++++++.+-.
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence 9999999999999888888888887654 7799999999999998875533
No 277
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.9e-18 Score=144.75 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=127.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++... + ..|.+|+.+.... .....+++.+.+++++..+
T Consensus 19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 19 AVKDVSMDFPENSV--TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 45555666688998 99999999999999999999864 1 2678887553211 1122345567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+...+..+++...... ...++..+..+.+...++..++. +.+.....+.++|+|+.|+ |+...++++
T Consensus 97 ~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 170 (252)
T PRK14256 97 FPAMSIYDNVIAGYKL------NGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170 (252)
T ss_pred CCcCcHHHHHHhHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 5444555555433221 11133444555667777777762 1122334567799999888 666678999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEE
Confidence 999999999999988888888888654 77999999999999987654
No 278
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.7e-17 Score=139.72 Aligned_cols=179 Identities=12% Similarity=0.073 Sum_probs=131.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+.-. .....+++.+.++++++. +++..+
T Consensus 22 ~l~~v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 22 QLNGVSFSITKGEW--VSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA-ENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc-CCHHHHhcceEEEEECHHHhhccCC
Confidence 45566666688999 9999999999999999999998755 77888765322 112234556777777753 344445
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... ....+.++..+.+..+++..++ .+.....+.++|+|+.|+ |+...|.++++|||++
T Consensus 99 v~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 99 VEDDVAFGME-------NQGIPREEMIKRVDEALLAVNM--LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred HHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 5555543322 1123455666677788888777 455566678899999888 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.++ ++++|+...+. .+++++.+
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l 213 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVM 213 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 99999999999999988763 77999999886 47877644
No 279
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.5e-17 Score=138.63 Aligned_cols=175 Identities=17% Similarity=0.202 Sum_probs=121.9
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+..|++ ++|.||||+|||||+++|++...+. .|.+++.+...... ..+.+.+++++..++...+..++
T Consensus 17 ~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~tv~e~ 91 (232)
T PRK10771 17 RFDLTVERGER--VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSMLFQENNLFSHLTVAQN 91 (232)
T ss_pred eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---hhccEEEEecccccccCCcHHHH
Confidence 34555578888 9999999999999999999987654 67788754221111 12345566665544433333344
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..+... .+ ... +.....+...++..|+ ++...+.+..+|+|+.|+ |+...|.++++|||++++|.
T Consensus 92 l~~~~~~-----~~-~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~ 162 (232)
T PRK10771 92 IGLGLNP-----GL-KLN-AAQREKLHAIARQMGI--EDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (232)
T ss_pred Hhccccc-----cc-CCC-HHHHHHHHHHHHHcCc--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 3222110 01 111 2334556777777777 556667788999999888 66777899999999999999
Q ss_pred ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 163 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 203 (232)
T PRK10771 163 ALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV 203 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9998888889888653 77999999999988887655
No 280
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.63 E-value=1.8e-18 Score=141.36 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=116.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+.... ....++.+.++++...++...+.
T Consensus 16 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 16 LFSGLSFTLNAGEL--VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ--RDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEecceEEECCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc--hHHhhhheEEeCCccccCcCCcH
Confidence 45566666788998 9999999999999999999987655 677887543211 12233344445444433332333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +... ...+.+...++..|+ .+.....+.++|+|+.|+ |+...|.++++|||+++
T Consensus 92 ~e~l~~~~~-------~~~~---~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 92 LENLRFYQR-------LHGP---GDDEALWEALAQVGL--AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred HHHHHHHHH-------hcCc---cHHHHHHHHHHHcCC--HHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 333322211 1111 123455667777777 455566788999999888 66677899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRT 208 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~ 208 (287)
+|......+.+.+.++.+. ++++|+...+.....
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 9999998888888887643 778999887766433
No 281
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.63 E-value=1.3e-17 Score=141.76 Aligned_cols=185 Identities=14% Similarity=0.124 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcE--EE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCR--LI 94 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~--~i 94 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+.. .......+++.+.+++++.. +.
T Consensus 26 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 26 TVLNNVSLSLKSGET--VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeEeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 355667777788999 9999999999999999999987654 7778875432 22222345566777777652 22
Q ss_pred EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
...+..+++...+. .+...+..+....+...++..|+. .......+..+|+|+.|+ |+..-|.++++|
T Consensus 104 ~~~t~~~~l~~~~~------~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD 176 (268)
T PRK10419 104 PRKTVREIIREPLR------HLLSLDKAERLARASEMLRAVDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176 (268)
T ss_pred CCCCHHHHHHHHHH------hhccCCHHHHHHHHHHHHHHcCCC-hhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 22222233322221 011234445555677788887772 123455677899999888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
||++++|......+.+.+.++.++ ++++|+...+..++++++.+-
T Consensus 177 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 226 (268)
T PRK10419 177 EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD 226 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE
Confidence 999999999888888888888753 789999999999999877553
No 282
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=5.4e-18 Score=143.18 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++... +. .|.+|+.+.... .....+++.+.+++++..
T Consensus 20 ~il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQNQV--TALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCCCE--EEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 355666666788999 99999999999999999999753 11 678887553211 112234556777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++. .+..+++...... ......+...+.+...++..++. +.....+.+.++|+|+.|| |+...+.+
T Consensus 98 ~~~-~tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l 170 (253)
T PRK14242 98 PFP-KSIFENVAYGLRV------NGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEV 170 (253)
T ss_pred CCc-CcHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 443 3455555433221 01112334455666777777762 1112234467899999888 66666889
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 171 LLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEE
Confidence 9999999999999988888888888533 67999999999999987755
No 283
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.7e-17 Score=156.61 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC------------CCHHHHHHHH-HHHHh
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH------------LTREAQQALR-RTMEK 86 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~------------l~~~~~~~l~-~~i~~ 86 (287)
+++.++..+.+|++ ++|+||||||||||+++|++.+.+. .|.+++.+. ........++ +.+.+
T Consensus 31 ~l~~is~~v~~Ge~--~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 31 AVRNLSFSLQRGET--LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred EEEeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 45566667789999 9999999999999999999998654 566665311 1111111222 23566
Q ss_pred ccCCc--EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----H
Q psy2281 87 YITTC--RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----A 158 (287)
Q Consensus 87 ~~~~~--~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----a 158 (287)
++|+. .+....+..+++..+++. ....+..+..+.+.+.++..|+.-. ....+++.++|+|+.|| |
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~A 182 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRL------HQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMA 182 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHH
Confidence 66654 233334455556554431 0134555667778888888888421 23456788999999998 7
Q ss_pred HHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 159 ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 159 l~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+...++++++|||++++|......+.+.+.++.++ |+++|+...+..++|+++.|..
T Consensus 183 L~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 183 LSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred HhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 77778999999999999999999999999998754 7899999999999999876543
No 284
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.62 E-value=2.1e-17 Score=139.53 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=122.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC-----C--CCHHHHH-HHHHHHHhccCCc
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD-----H--LTREAQQ-ALRRTMEKYITTC 91 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d-----~--l~~~~~~-~l~~~i~~~~~~~ 91 (287)
+.+.++..+++|++ ++|.||||+|||||++++++...+. .|.+++.+ . ....... ...+.+.+++++.
T Consensus 18 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 18 GCRDVSFDLYPGEV--LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred EeecceEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 34566666788999 9999999999999999999987655 67788754 1 1211111 1223355555553
Q ss_pred EE--EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 92 RL--ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 92 ~~--i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
.. ....+..+++...+.. +...........+...++..++. .......+..+|+|+.|| |+...|.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~~qrv~laral~~~p~ 168 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMA------IGARHYGNIRAAAHDWLEEVEID-PTRIDDLPRAFSGGMQQRLQIARNLVTRPR 168 (253)
T ss_pred ccccCccccHHHHHHHHHHH------hcccchHHHHHHHHHHHHHcCCC-hhhhhcCchhcCHHHHHHHHHHHHHhcCCC
Confidence 21 1111112222221110 11111223345666777777773 134556778899999888 7777789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++++|||++++|......+.+.+.++.++ |+++|+.+.+...+++++.+-
T Consensus 169 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~ 223 (253)
T TIGR02323 169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223 (253)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 99999999999999999998888887653 789999999998888876543
No 285
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.62 E-value=5e-18 Score=140.67 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+++|++ +.|.||||+|||||++++++...+. .|.+++.+... . .....+....+
T Consensus 36 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----------~---~~~~~~~~~~t 100 (224)
T cd03220 36 WALKDVSFEVPRGER--IGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----------L---GLGGGFNPELT 100 (224)
T ss_pred EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----------h---cccccCCCCCc
Confidence 345555556678888 9999999999999999999987655 67777654210 0 00011111122
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... +...+..+..+.+...++..++ ++.....+.++|+|+.|+ ++...|.++++|||++
T Consensus 101 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 101 GRENIYLNGR-------LLGLSRKEIDEKIDEIIEFSEL--GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2333322211 1223444555566677777776 555666788999999888 6666688999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999888888888887654 77999999888887766533
No 286
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=9.2e-18 Score=141.43 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTREAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~ 93 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+ ..|.+++.+.........+++.+.+++++..+
T Consensus 17 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 17 QALKSINLPIPARQV--TALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeecceEEecCCCE--EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 356666777788999 999999999999999999998763 16778876532111122445667777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++...... ......+...+.+...++..++. +.+.......++|+|+.|+ |+..-++++
T Consensus 95 ~~-~tv~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 167 (249)
T PRK14253 95 FP-MSIYENVAYGLRA------QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVI 167 (249)
T ss_pred Cc-ccHHHHHHhHHHh------cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 44 4555555332210 11112334445556666666652 1122334456799999888 666678999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 168 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 168 LMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999988888888888654 779999999999999877553
No 287
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.62 E-value=7.5e-18 Score=138.69 Aligned_cols=173 Identities=16% Similarity=0.040 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+.-.. ..++.+.+++++..++...+
T Consensus 25 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~~~~~i~~~~q~~~~~~~~t 98 (214)
T PRK13543 25 PVFGPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----DRSRFMAYLGHLPGLKADLS 98 (214)
T ss_pred eeeecceEEECCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----hhhhceEEeecCcccccCCc
Confidence 345566666688998 9999999999999999999987654 677887543211 12233555555443332223
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... +.... ..+.+...++..++ ++.....+..+|+|+.|+ ++...+.++++|||++
T Consensus 99 ~~e~l~~~~~-------~~~~~---~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 99 TLENLHFLCG-------LHGRR---AKQMPGSALAIVGL--AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred HHHHHHHHHH-------hcCCc---HHHHHHHHHHHcCC--hhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3333322111 11111 22344556666676 455566778999999888 6666788999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
++|......+.+.+.++.+. ++++|+...+..++++++
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 167 NLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence 99999988888888887655 789999999999888754
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.62 E-value=1.8e-17 Score=154.12 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCC--CCHHHHHHHHHHHHhccCCcE--EEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDH--LTREAQQALRRTMEKYITTCR--LILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~--~i~~ 96 (287)
+.+.++..+.+|++ ++|.||||||||||++++++..... .|.+++.+. .+......+++.+.+++|+.. ++..
T Consensus 301 il~~isl~i~~Ge~--~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 301 VVKNISFTLRPGET--LGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 45666666789999 9999999999999999999987422 677887542 122212223445677776642 3333
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.+..+++..+...+ -...+..+..+.+..+++..++ + +...+.+.++|+|+.|| |+...|.++++||
T Consensus 379 ~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 451 (529)
T PRK15134 379 LNVLQIIEEGLRVH-----QPTLSAAQREQQVIAVMEEVGL--DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451 (529)
T ss_pred ccHHHHHHHHHHhc-----cccCChHHHHHHHHHHHHHcCC--CHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeC
Confidence 34445554433210 0012334455667778888887 4 34567788999999998 6666789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
|++++|......+.+.+.++.++ |+++|+...+..++|+++.+-.
T Consensus 452 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 452 PTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 99999999999999999988753 7799999999999998875543
No 289
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=2.9e-17 Score=137.16 Aligned_cols=177 Identities=13% Similarity=0.176 Sum_probs=125.8
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.+.++..+.+|+. ++|.||||+|||||+++|++...+. -|.+++.+...... .++.+.+++++..++...+..
T Consensus 15 l~~is~~i~~Ge~--~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~---~~~~i~~~~q~~~~~~~~t~~ 89 (235)
T cd03299 15 LKNVSLEVERGDY--FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYVPQNYALFPHMTVY 89 (235)
T ss_pred eeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh---hHcCEEEEeecCccCCCccHH
Confidence 4445555578888 9999999999999999999987655 67788754321111 123455566555444334444
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++..... ....+..+..+.+...++..++ .+...+.+.++|+|+.|| |+...+.++++|||++++
T Consensus 90 e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 160 (235)
T cd03299 90 KNIAYGLK-------KRKVDKKEIERKVLEIAEMLGI--DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence 44433221 1122344555666777887777 566667788999999888 666678899999999999
Q ss_pred cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|......+.+.+.++..+ ++++|+...+...+++++.+
T Consensus 161 D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM 203 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999888888888653 77999999998888887655
No 290
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=7.8e-18 Score=142.76 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCC-CHHHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHL-TREAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+++|+. ++|.||||+|||||++++++...+ ..|.+++.+.- .......+++.+.+++++..
T Consensus 21 ~il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSMEIYQSKV--TAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 345666666789999 999999999999999999998764 26777775521 11112234555666666655
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
++. .+..+++..... .... +..+..+.+...++..++. +.+...+.+.++|+|+.|+ ++..-+.
T Consensus 99 l~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ 170 (261)
T PRK14258 99 LFP-MSVYDNVAYGVK-------IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPK 170 (261)
T ss_pred cCc-ccHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 443 444455433221 1111 3334445667777777762 2233445567899999888 6666789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
++++|||++++|......+.+.+.++... ++++|+...+..++++++.+-.
T Consensus 171 vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 171 VLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 99999999999999988888888887543 7799999999999998876644
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=8.7e-18 Score=155.61 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=126.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc---EEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC---RLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~---~~i~~ 96 (287)
+.+.++..+.+|++ +.|.||||||||||+++|++...+. -|.+++.+.-.......+++.+.+++|+. .++..
T Consensus 278 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEI--LGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 44555555688999 9999999999999999999987654 67787754211111123344567776652 23332
Q ss_pred eCCCCCCcHHHhcccc-e-eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 97 ANSMSQVIPAIRSRCL-C-IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+..+++..+...+.. . ..+...........+.++++..++. .+...+.+.++|+|+.|| |+...|.++++|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 434 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK-CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC-CCCccCccccCChHHHHHHHHHHHHhcCCCEEEEC
Confidence 3344444322110000 0 0011112223335567778877772 134567788999999998 666668999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. |+++|+.+.+..++|+++.+
T Consensus 435 EPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 999999999999999999888654 78999999999999987755
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.61 E-value=5.6e-17 Score=130.94 Aligned_cols=186 Identities=16% Similarity=0.089 Sum_probs=130.6
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EE
Q psy2281 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LI 94 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i 94 (287)
.+.++..++..++.|+. ..|+||||+|||||++.+++...+. .+.+=+...-..+....+++.++.++.... +.
T Consensus 43 gk~iL~~isW~V~~ge~--W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 43 GKKILGDLSWQVNPGEH--WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred CEeeccccceeecCCCc--EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 44567788888899988 9999999999999999999998774 222222222222333678888887764432 22
Q ss_pred EEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 95 LCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 95 ~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
...++.+-+..+.-. .+-+.. ...++....+..+++..|+ +..+.+....+|.|+.|+ |+...|.++++
T Consensus 121 ~~~~v~dvVlSg~~~---siG~y~~~~~~~~~~~a~~lle~~g~--~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiL 195 (257)
T COG1119 121 VRETVRDVVLSGFFA---SIGIYQEDLTAEDLAAAQWLLELLGA--KHLADRPFGSLSQGEQRRVLIARALVKDPELLIL 195 (257)
T ss_pred cccccceeeeecccc---cccccccCCCHHHHHHHHHHHHHcch--hhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEe
Confidence 222222333332211 112222 3345666777888888887 566778889999999988 88888999999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH------HHhccChhHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL------IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~------i~~~~~~~~~~~~~~~~~ 211 (287)
|||++++|....+...+.+.++... ++++|..+++....+++.
T Consensus 196 DEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 9999999999988888888887755 779999888876655443
No 293
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.61 E-value=4.8e-18 Score=157.03 Aligned_cols=185 Identities=10% Similarity=0.004 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+ . .|.+++.+.-........++.+.+++|+..++...
T Consensus 16 il~~isl~i~~Ge~--~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 16 ALDGIDLEVRPGEC--VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eecceEEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 45666667788999 999999999999999999998764 2 67777754321111112233466666665444433
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
+..+++..+...+. .....+.++....+...++..++. +.. .+.+.++|+|+.|| |+...|+++++|||
T Consensus 94 tv~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 94 SVAENIFLGNEITL---PGGRMAYNAMYLRAKNLLRELQLD--ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred cHHHHHHhhccccc---cccccCHHHHHHHHHHHHHHcCCC--CCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 44444432211000 000123345556677788888873 322 34578999999998 67777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 169 t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 169 SSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence 9999999999999999888654 78999999999999988755
No 294
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.61 E-value=1.1e-17 Score=138.88 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+..... ...+++.+.+++++..++. .+
T Consensus 21 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~~~q~~~l~~-~t 96 (225)
T PRK10247 21 KILNNISFSLRAGEF--KLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK-PEIYRQQVSYCAQTPTLFG-DT 96 (225)
T ss_pred eeeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC-HHHHHhccEEEeccccccc-cc
Confidence 355666666788999 9999999999999999999987654 6777875421111 1224456777777654432 24
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... +..... ....+...++..++. +......+.++|+|+.|+ |+...+.++++|||++
T Consensus 97 v~enl~~~~~-------~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 97 VYDNLIFPWQ-------IRNQQP--DPAIFLDDLERFALP-DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred HHHHHHhHHh-------hcCCCh--HHHHHHHHHHHcCCC-hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4444432211 111111 123455677777772 123456678899999888 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l 210 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITL 210 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEE
Confidence 99999988888888888653 67899988875 47776544
No 295
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.5e-17 Score=140.40 Aligned_cols=186 Identities=12% Similarity=0.084 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-------CCEEEEeCCCCCC-HHHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-------GPVIILNETDHLT-REAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------~~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++... ...|.+|+.+... .......++.+.+++++..
T Consensus 18 ~~l~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 18 EALHGISLDFEEKEL--TALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 345566666788998 99999999999999999999874 1167788865321 1122334555777777655
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++. .+..+++.....- ......+...+.+...++..++. ..........++|+|+.|+ |+..-+++
T Consensus 96 ~~~-~tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~l 168 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKI------AGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKV 168 (251)
T ss_pred cCC-CcHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 443 3445555433210 11112333445566667776762 1123345677899999888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
+++|||++++|+.....+.+.+.++.+. ++++|+...+..++++++.+-.
T Consensus 169 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 169 VLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred EEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 9999999999999888888888887543 7799999999999998875533
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.6e-17 Score=153.61 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-P--VIILNETDHLTREAQQALRRTMEKYITTCR---LIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~ 95 (287)
+.+.++..+++|++ +.|.||||+|||||+++|++...+ . .|.+++.+.-........++.+.+++|+.. ++.
T Consensus 277 vl~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 277 RVDDVSFSLRRGEI--LGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccceeeEEcCCcE--EEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 45566666689999 999999999999999999998763 3 777877542111111223334666666531 332
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..+...+.. .+...+..+..+.+..+++..++. ++...+.+.++|+|+.|| |+...|+++++||
T Consensus 355 ~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE 431 (506)
T PRK13549 355 VMGVGKNITLAALDRFT--GGSRIDDAAELKTILESIQRLKVK-TASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE 431 (506)
T ss_pred CCCHHHHhhhhhhhhhc--cCcccChHHHHHHHHHHHHhcCcc-CCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 23444444332211100 001123334455677788888872 123567788999999998 6666789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|......+.+.+.++.+. |+++|+...+..++|+++.+
T Consensus 432 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred CCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999999999888764 78999999999999987754
No 297
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.61 E-value=3.6e-17 Score=150.80 Aligned_cols=181 Identities=13% Similarity=0.039 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|++ ++|.||||+|||||++++++.+.+. .|.+++.+..... ...+++.+.+++++..+.+...
T Consensus 17 ~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDS--WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS-FEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC-HHHHHHHhceeccCcchhhccc
Confidence 456677777789999 9999999999999999999987654 5666654322111 1223455777766543211111
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
........... .+.+ . .+..+.+...++..|+ ++...+.+.++|+|+.|| |+...|.++++|||++
T Consensus 94 ~~~~~~~~~~~---~~~~---~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (490)
T PRK10938 94 GEDDTGRTTAE---IIQD---E-VKDPARCEQLAQQFGI--TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFD 164 (490)
T ss_pred chhhccccHHH---hccc---c-hhHHHHHHHHHHHcCC--HhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 00000001110 0001 1 1223456677777777 555667788999999998 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.+. |+++|+.+.+..++|+++.+
T Consensus 165 ~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 165 GLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 99999999999999988654 77999999999999987754
No 298
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.1e-17 Score=138.77 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=126.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+++|++ ++|.||||+|||||+++|++...+ . .|.+|+.+.... .....+++.+.++++...+
T Consensus 34 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 34 ALFDVDLDIPEKTV--TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 34555556688988 999999999999999999998753 2 778887553211 1122345567777776654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++......+ .+. .+..+....+...++..++. +.....+...++|+|+.|| |+..-|.++
T Consensus 112 ~~-~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 112 FP-KSIYENVAYGPRIH----GLA-RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred CC-CcHHHHHHHHHHhc----ccc-cchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 43 24445554332111 010 13344555667777777772 0112234567899999888 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEE
Confidence 999999999999988888888887543 77999999999988887654
No 299
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.61 E-value=9.4e-18 Score=142.72 Aligned_cols=185 Identities=16% Similarity=0.085 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------C-EEEEeCCCCCCHHHHHHHHHHHHhccCC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------P-VIILNETDHLTREAQQALRRTMEKYITT 90 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------~-~i~ide~d~l~~~~~~~l~~~i~~~~~~ 90 (287)
.+.+.++..+..|+. +.|.||||+|||||+++|++.+.+ . .|.+++.+.. ......+++.+.+++++
T Consensus 15 ~il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 15 AILRDLSLRIEPGRV--TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA-AIDAPRLARLRAVLPQA 91 (272)
T ss_pred eEEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc-cCCHHHHHhhcEEeccc
Confidence 345566666788998 999999999999999999998753 2 6778875431 11122344456666766
Q ss_pred cEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHH-----
Q psy2281 91 CRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AIL----- 160 (287)
Q Consensus 91 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~----- 160 (287)
..+++..+..+++......+.. ...... .+..+.+...++..++ ++...+.+.++|+|+.|+ |+.
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~~~~ 166 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHAR--RAGALT-HRDGEIAWQALALAGA--TALVGRDVTTLSGGELARVQFARVLAQLWPP 166 (272)
T ss_pred CCCCCCCcHHHHHhhccccccc--ccccCC-HHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 5433333444444322110000 001112 2334556677777777 444556678899999888 444
Q ss_pred ----HHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 161 ----MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 161 ----~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
..+.++++|||++++|......+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 167 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 167 HDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred cccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 258899999999999999999999999888654 77999999999889987754
No 300
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.9e-18 Score=146.93 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++...+ . -|.+++.+.... .....+++.+.+++++..+
T Consensus 54 il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 54 ALDDVSMDIPENQV--TAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45566666688999 999999999999999999998642 2 677777542110 0112344556777776654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++..... +..... +....+...++..++. +.+...+.+.++|+|+.|| |+...+.++
T Consensus 132 ~~-~tv~enl~~~~~-------~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lL 202 (285)
T PRK14254 132 FP-KSIYDNVAYGLK-------IQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVI 202 (285)
T ss_pred Cc-CCHHHHHHHHHH-------HcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 43 244444433321 111222 3445566777777762 1233455677899999888 666678999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
++|||++++|......+.+.+.++.+. |+++|+...+..++++++
T Consensus 203 LLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~ 250 (285)
T PRK14254 203 LMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA 250 (285)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 999999999999888888888888654 779999999999888754
No 301
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.61 E-value=2.4e-17 Score=138.71 Aligned_cols=178 Identities=16% Similarity=0.189 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
++.++..+..|++ +.|.||||+|||||++++++..... .|.+|+.+.- ......+++.+.+++++..+++..+..+
T Consensus 12 l~~vsl~i~~Gei--~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~-~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 12 LGPLSAEVRAGEI--LHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLE-AWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred ecceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecC-cCCHHHHhhheEEecccCccCCCccHHH
Confidence 3444555578888 9999999999999999999976422 6778875421 1112223344666666554433333333
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH-------HHHHhhcC
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM-------CEASKVQQ 169 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~-------l~~~~~~d 169 (287)
++.... ....+.++..+.+...++..++ .+...+.+..+|+|+.|+ |+.. .++++++|
T Consensus 89 nl~~~~--------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 89 YLTLHQ--------PDKTRTEAVASALNEVAEALGL--DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHhcC--------ccCCCcHHHHHHHHHHHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 322110 0112233445566777877777 455556778899999888 3332 23899999
Q ss_pred CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 206 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL 206 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999988888888888653 77999999999999987754
No 302
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.1e-14 Score=119.91 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=107.9
Q ss_pred ccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281 7 KYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP----------- 62 (287)
Q Consensus 7 k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~----------- 62 (287)
+-.-.+++++-|-++.++.++..++ -|--|+ ++||||||||||-|++|+|+.....
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 3334578888888888888888872 243333 9999999999999999999887655
Q ss_pred -----------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc-----cCCcEEEEEeCCCCCC
Q psy2281 63 -----------------------VIILNETDHLT-----------REAQQALRRTMEKY-----ITTCRLILCANSMSQV 103 (287)
Q Consensus 63 -----------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~-----~~~~~~i~~~~~~~~l 103 (287)
+|||||+|.+. .+.|..+...+... ..+..+|.++|..+-+
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 99999999863 23465555555442 3467899999999999
Q ss_pred cHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q psy2281 104 IPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS 151 (287)
Q Consensus 104 ~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s 151 (287)
.|++.. |+ ..+.|+.|+.+...++++-...+.++. ++-.++.++..+
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~ 353 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLT 353 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhc
Confidence 999886 44 469999999999999999888887763 222355566543
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.61 E-value=8.5e-17 Score=149.37 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEe-CCC--CCC---HHHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILN-ETD--HLT---REAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~id-e~d--~l~---~~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++...+. .|.++ +-+ .++ ......+++.+.+++|+..+
T Consensus 299 il~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 299 AVDNVSLEVKEGEI--FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred EEeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 44556666688999 9999999999999999999987654 66674 321 111 11112334457777776554
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI---PPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+...+..+++..++. + ..+.++....+...++..++.- .+...+.+.++|+|+.|| |+...|.+
T Consensus 377 ~~~~tv~e~l~~~~~-------~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l 448 (520)
T TIGR03269 377 YPHRTVLDNLTEAIG-------L-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI 448 (520)
T ss_pred CCCCcHHHHHHHHHH-------c-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 443344444433221 1 1223334456677788888741 123567788999999998 66667899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.++ |+++|+...+..++++++.+
T Consensus 449 LllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l 501 (520)
T TIGR03269 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM 501 (520)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999888654 78999999999999987754
No 304
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=9.1e-18 Score=141.55 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ ..|.+|+.+.... .....+++.+.+++++..+
T Consensus 18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 18 ALKKINLDIEENQV--TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 45566666688999 999999999999999999997531 2678887653211 1123345567777776554
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++...... ....+.++..+.+...++..++. +.+...+.+.++|+|+.|| |+...++++
T Consensus 96 ~~-~t~~~ni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14240 96 FP-MSIYDNVAYGPRT------HGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVL 168 (250)
T ss_pred Cc-ccHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 43 4444555432210 11123344556667777776652 1223344567799999888 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+.+.+...+++++.+
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEE
Confidence 999999999999988888888887533 77999999999988887655
No 305
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.1e-17 Score=142.60 Aligned_cols=182 Identities=12% Similarity=0.135 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++.+. +. .|.+++.+.... .....+++.+.+++++..+
T Consensus 39 il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 39 ALKNINLDIHENEV--TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 44555556688998 99999999999999999999875 22 677887653211 1123345667778877665
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGL--TIPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..+.. .... +.......+...++..++ .+.+.....+.++|+|+.|| ++..-+++
T Consensus 117 ~~-~tv~eni~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~l 188 (271)
T PRK14238 117 FP-KSIYDNVTYGPK-------IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDV 188 (271)
T ss_pred cc-ccHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 54 355555544322 1111 222334455555555443 12333445567899999888 66667899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 189 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 189 ILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFF 239 (271)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 9999999999999998888888887643 77999999999999987654
No 306
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.61 E-value=1.8e-17 Score=137.68 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++.+. +. .|++++.+. .. ...++.+.+.+++..++..
T Consensus 22 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~-~~---~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 22 ILNDVSLHVESGQV--MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR-KP---DQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred cccCceEEEcCCeE--EEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC-Ch---HHhcccEEEeCCCCccCcC
Confidence 44555556688988 99999999999999999999886 43 677887653 21 2334556777776655544
Q ss_pred eCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTN-ICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+..+++.....-. ... ............ .++..++ ++...+.+.++|+|+.|+ ++...|+++++|
T Consensus 96 ~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD 168 (226)
T cd03234 96 LTVRETLTYTAILR-----LPRKSSDAIRKKRVEDVLLRDLAL--TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD 168 (226)
T ss_pred CcHHHHHHHHHHhh-----cccccchHHHHHHHHHHHHHhhcc--hhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 45555554322100 111 111122223333 5666665 444445677899999888 666678999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH----HHhccCh-hHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSP-KKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~-~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+. ..+...+|+++.+
T Consensus 169 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 169 EPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 999999999998888888887653 6788997 5788888876543
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=7.2e-17 Score=165.27 Aligned_cols=176 Identities=17% Similarity=0.085 Sum_probs=132.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|++ +.|.||||+||||++++|++...++ .|.+++.+... . ....++.+++.+|...+....+..+
T Consensus 1956 ~~ISf~I~~GEi--~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~-~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1956 DRLCVGVRPGEC--FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-N-ISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred EeeEEEEcCCcE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-h-HHHHhhhEEEEeccccCCCCCCHHH
Confidence 333334467888 9999999999999999999998766 77888766322 2 2334566787777765554445555
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
++....+ +...+.++..+.+...++..++ .+...+.+.++|+|+.|| |+...|+++++|||++++|
T Consensus 2032 ~L~l~a~-------l~g~~~~~~~~~v~~lLe~lgL--~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLD 2102 (2272)
T TIGR01257 2032 HLYLYAR-------LRGVPAEEIEKVANWSIQSLGL--SLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102 (2272)
T ss_pred HHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 5433222 2334455666677788888887 566677789999999999 5666689999999999999
Q ss_pred CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
+..+..+.+.+.++.++ |+++|+.++++.+++++.-
T Consensus 2103 p~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~I 2142 (2272)
T TIGR01257 2103 PQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAI 2142 (2272)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999988654 7899999999999998763
No 308
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.2e-17 Score=141.51 Aligned_cols=184 Identities=14% Similarity=0.066 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ ..|.+|+.+.... .....+++.+.+++++..+
T Consensus 22 il~~isl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 22 AIEGISMDIYRNKV--TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 45556666688999 999999999999999999998652 2678887543211 1123445567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++......+ ...+..+..+.+...++..++. +.+.......++|+|+.|+ |+...+.++
T Consensus 100 ~~-~tv~enl~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 100 FP-MSIYENVAYGVRIS------AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred CC-ccHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 44 45555554332211 1123344455666677776762 1223345567899998888 666678899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. ++++|+.+.+..++|+++.+.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 999999999999888888888887544 779999999999999877553
No 309
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.61 E-value=8e-17 Score=133.46 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=120.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||++++++.+.+. .|.+++.+. ... . .+.+.+.+++..++...+.
T Consensus 15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~-~~~---~-~~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 15 AVNNISLTVPKNSV--YGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW-TRK---D-LHKIGSLIESPPLYENLTA 87 (223)
T ss_pred EEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec-ccc---c-cccEEEEcCCCCccccCCH
Confidence 34455555678888 9999999999999999999987654 677777542 211 0 1234455555443333333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+. ..+...++..|+ ++.....+.++|+|+.|+ |+...+.++++|||+++
T Consensus 88 ~~~~~~~~~-------~~~~~~----~~~~~~l~~~~l--~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~ 154 (223)
T TIGR03740 88 RENLKVHTT-------LLGLPD----SRIDEVLNIVDL--TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154 (223)
T ss_pred HHHHHHHHH-------HcCCCH----HHHHHHHHHcCC--cHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 344322211 112222 234556666677 566677788999999888 66666899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+|......+.+.+.++.+. ++++|+...+...+++++.+-
T Consensus 155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 198 (223)
T TIGR03740 155 LDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIIS 198 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEe
Confidence 9999999999999888653 779999999999999877553
No 310
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-17 Score=142.15 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTREAQQALRRTMEKYITTCRLI 94 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i 94 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . -|.+++.+.........+++.+.+++++..++
T Consensus 36 il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 36 VLDQVSMGFPARAV--TSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 45566666688998 999999999999999999998763 1 67788754322111233456677777776544
Q ss_pred EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
. .+..+++...... ....+..+....+...++..++.- .+...+.+.++|+|+.|| ++...|.+++
T Consensus 114 ~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lll 186 (276)
T PRK14271 114 P-MSIMDNVLAGVRA------HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL 186 (276)
T ss_pred C-ccHHHHHHHHHHh------ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4 4555554433210 111344555556666777777631 112334567899999888 6666789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+|||++++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999888888888887554 779999999999999887553
No 311
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.60 E-value=3.7e-14 Score=121.26 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=110.5
Q ss_pred CccCcHHHHHHHHHHH----------hcCC-----CCcEEEeCCCCCcHHHHHHHHHHHhCC------------------
Q psy2281 15 KLDFHCKQANHLRNLL----------KEGD-----FPHLLFYGPSGAGKKTRIMALLKELYG------------------ 61 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~----------~~g~-----~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------ 61 (287)
+++|...+++.+..+. +.|- ..|++|+|||||||||+++++++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 5788887777766543 1121 125999999999999999888766521
Q ss_pred --------------------CEEEEeCCCCC---------CHHHHHHHHHHHHhccCCcEEEEEeCCC--C---CCcHHH
Q psy2281 62 --------------------PVIILNETDHL---------TREAQQALRRTMEKYITTCRLILCANSM--S---QVIPAI 107 (287)
Q Consensus 62 --------------------~~i~ide~d~l---------~~~~~~~l~~~i~~~~~~~~~i~~~~~~--~---~l~~~l 107 (287)
.+++|||++.+ ..+.++.|.+.|+....+.++|++++.. + .+.+++
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L 182 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF 182 (284)
T ss_pred HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH
Confidence 08999999976 2345678888888665555555544322 1 246899
Q ss_pred hcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q psy2281 108 RSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ--------SDRNLRRAILMCEASKV 167 (287)
Q Consensus 108 ~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~G~~r~al~~l~~~~~ 167 (287)
++||. .+.|++++.+++..++...+++.+..+++++.+.+.++ ..|+.|.+-+.++.++.
T Consensus 183 ~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 99995 69999999999999999999998888888887777654 24667776666665543
No 312
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=9.1e-18 Score=142.25 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=125.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCC-HHHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLT-REAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+ ..|.+|+.+... ......+++.+.+++++..+
T Consensus 27 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 27 ALKNINLSIPENEV--TAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 45555556688998 999999999999999999998751 267788765321 11123345567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+.. +..+++...... +...+.++....+...++..++. +.+.......++|+|+.|+ ++...++++
T Consensus 105 ~~~-tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~ll 177 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRI------HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL 177 (259)
T ss_pred ccc-CHHHHHHhHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 442 444554322110 11123345555666677776762 0122334566799999888 666778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 178 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 999999999999988888888887543 77999999999999987655
No 313
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.2e-17 Score=141.18 Aligned_cols=187 Identities=14% Similarity=0.129 Sum_probs=127.8
Q ss_pred CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------VIILNETDHLTREAQQALRRTMEKYIT 89 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------~i~ide~d~l~~~~~~~l~~~i~~~~~ 89 (287)
+...++..++..+.+|++ ++|.||||+|||||+++|++...+. .+.+|+.+... .....+++.+.+.++
T Consensus 21 ~~~~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~-~~~~~~~~~i~~~~q 97 (257)
T PRK14246 21 NDKAILKDITIKIPNNSI--FGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ-IDAIKLRKEVGMVFQ 97 (257)
T ss_pred CCceeEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc-CCHHHHhcceEEEcc
Confidence 444456666666788988 9999999999999999999987643 23344433211 112234556777777
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMC 162 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l 162 (287)
+..++...+..+++..+... ....+.++..+.+...++..++.- .+.....+..+|+|+.|+ |+..-
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~ 171 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKS------HGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALK 171 (257)
T ss_pred CCccCCCCcHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 76554444555555433210 011134455566777777777621 123345667899998888 77777
Q ss_pred HHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
|+++++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+
T Consensus 172 P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 8999999999999999888888888877543 78999999998888887655
No 314
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.60 E-value=4.1e-17 Score=135.10 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=116.7
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE--eCCCCCCcH
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC--ANSMSQVIP 105 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~--~~~~~~l~~ 105 (287)
+++|+. ++|.||||+|||||++++++...+. .|.+|+.+. . ..++.+.+++++..+... .+..+++..
T Consensus 3 i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 3 ADKGEL--LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-G-----KGWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred cCCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-h-----HhhCcEEEecccccccCCCCccHHHHHHh
Confidence 357888 9999999999999999999987654 678887652 1 123345566655433211 122222221
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccC
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVE 180 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~ 180 (287)
....... .+.... ......+...++..++ ++.....+.++|+|+.|| |+...+.++++|||++++|....
T Consensus 75 ~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 75 GRTGHIG--WLRRPC-VADFAAVRDALRRVGL--TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccccc--cccCCc-HHHHHHHHHHHHHhCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1100000 011111 2233456677777787 455556778899999888 77777899999999999999999
Q ss_pred ccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 181 PDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 181 ~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
..+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999888753 77999999999999988754
No 315
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.60 E-value=4.6e-17 Score=137.84 Aligned_cols=165 Identities=13% Similarity=0.037 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+.+|+. ++|.||||+|||||+++|++.+.+. .|.+++... ...++..+....+..+
T Consensus 41 ~~is~~i~~Ge~--~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~--------------~~~~~~~~~~~~tv~e 104 (264)
T PRK13546 41 DDISLKAYEGDV--IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS--------------VIAISAGLSGQLTGIE 104 (264)
T ss_pred eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEe--------------EEecccCCCCCCcHHH
Confidence 344444477888 9999999999999999999987654 566665210 0011111111111122
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
++..... +...+.++....+..+++..++ .+.....+.++|+|+.|+ |+...|.++++|||++++|
T Consensus 105 nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 105 NIEFKML-------CMGFKRKEIKAMTPKIIEFSEL--GEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 2211110 1223445555556666766666 455556778899999888 6666688999999999999
Q ss_pred CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l 216 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI 216 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence 88888888888887543 77999999999988887644
No 316
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=1.7e-17 Score=135.88 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||++++++...+. .|.+++.+. ... . .++.+.++++...++...+.
T Consensus 17 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~--~-~~~~~~~~~~~~~~~~~~tv 90 (207)
T PRK13539 17 LFSGLSFTLAAGEA--LVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-DDP--D-VAEACHYLGHRNAMKPALTV 90 (207)
T ss_pred EEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC-cch--h-hHhhcEEecCCCcCCCCCcH
Confidence 45556666688999 9999999999999999999987644 677887552 211 1 34445555544433333333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +..... +.+...++..|+ .+.....+.++|+|+.|| |+...++++++|||+++
T Consensus 91 ~~~l~~~~~-------~~~~~~----~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 91 AENLEFWAA-------FLGGEE----LDIAAALEAVGL--APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred HHHHHHHHH-------hcCCcH----HHHHHHHHHcCC--HHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 344322111 111122 235566777777 444455677899999888 66666889999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLE 205 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~ 205 (287)
+|......+.+.+.++.++ ++++|+...+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 9999998888888887654 778999887775
No 317
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=8.1e-18 Score=143.19 Aligned_cols=182 Identities=14% Similarity=0.110 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLT-REAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+++.+... ......+++.+.+++++..+
T Consensus 28 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 28 AVKNVFCDIPRGKV--TALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEcceEEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 45566666688999 999999999999999999998642 2 67778754211 00112344557777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++..... +..... +..+.+...++..++. +.+...+.+.++|+|+.|+ |+...++++
T Consensus 106 ~~-~tv~enl~~~~~-------~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 176 (269)
T PRK14259 106 FP-KSIYENIAFGAR-------INGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVI 176 (269)
T ss_pred ch-hhHHHHHhhhhh-------hcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 43 244444433211 111111 2234445556666552 2233345567899999888 666678999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. |+++|+...+..++|+++.+-
T Consensus 177 lLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 999999999999888888888887533 779999999999999887553
No 318
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2e-17 Score=139.54 Aligned_cols=183 Identities=12% Similarity=0.111 Sum_probs=125.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTRE-AQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+ . .|.+|+.+..... ....+++.+.+.+++..+
T Consensus 18 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 18 AVKNVTMKIFKNQI--TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred eEeeeeEeecCCCE--EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 45666667788999 999999999999999999997652 2 6788875532111 122345567777776654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++.....- ......+...+.+...++..++. +.......+.++|+|+.|| |+..-++++
T Consensus 96 ~~-~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ll 168 (250)
T PRK14262 96 FP-MSIYDNVAFGPRI------HGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVI 168 (250)
T ss_pred Cc-ccHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEE
Confidence 43 3444444332110 01122333445556666766762 1123445677899999888 666678899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 169 LLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred EEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999888888888887543 77999999999988987654
No 319
>KOG0059|consensus
Probab=99.60 E-value=1.3e-16 Score=155.50 Aligned_cols=193 Identities=19% Similarity=0.107 Sum_probs=151.4
Q ss_pred CCCCCCccCcHH-HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHh
Q psy2281 10 PNNLQKLDFHCK-QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEK 86 (287)
Q Consensus 10 p~~~~~~~~~~~-~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~ 86 (287)
..++...++... +++.+...+++|++ +.+.||||+||||+++++.+...+. .+++.+.+..........++.+++
T Consensus 567 ~~~L~k~y~~~~~Av~~ls~~V~~gec--fgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGy 644 (885)
T KOG0059|consen 567 LNNLSKVYGGKDGAVRGLSFAVPPGEC--FGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGY 644 (885)
T ss_pred EcceeeeecchhhhhcceEEEecCCce--EEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhccc
Confidence 344555555444 56666666789999 9999999999999999999998766 666777665433333446778998
Q ss_pred ccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH
Q psy2281 87 YITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM 161 (287)
Q Consensus 87 ~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~ 161 (287)
.||.-.+....|..+.+..--+ +++....++.+.+++.++..++ .+.+...+..+|+|+.|+ |+..
T Consensus 645 CPQ~d~l~~~lT~rEhL~~~ar-------lrG~~~~di~~~v~~ll~~~~L--~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 645 CPQFDALWEELTGREHLEFYAR-------LRGLPRSDIGSAIEKLLRLVGL--GPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred CCchhhhhhhccHHHHHHHHHH-------HcCCChhHHHHHHHHHHHHcCC--hhhhccchhhCCCcchhhHHHHHHHhc
Confidence 8887655555555554433222 5678888999999999999988 677777788999999999 6666
Q ss_pred HHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
.|.++++|||++++|+..+..+.+.+.++.+. ++.+|++++.+.+|+++.-+
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aIm 771 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIM 771 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhhee
Confidence 67899999999999999999999999999874 78999999999999998733
No 320
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.3e-17 Score=140.24 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---P--VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|+. +.|.||||+|||||++++++...+ . .|.+|+.+.... ....+++.+.+++++..++.
T Consensus 17 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~-~~~~~~~~i~~~~q~~~l~~- 92 (246)
T PRK14269 17 ALFDINMQIEQNKI--TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ-DVVALRKNVGMVFQQPNVFV- 92 (246)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC-CHHHHhhhEEEEecCCcccc-
Confidence 45556666688888 999999999999999999998631 2 677887653221 12344566888888765544
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+..+++.....-+ .+. .........+...++..++.- .+...+...++|+|+.|+ |+...++++++|
T Consensus 93 ~tv~eni~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 167 (246)
T PRK14269 93 KSIYENISYAPKLH----GMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD 167 (246)
T ss_pred ccHHHHhhhHHhhc----Ccc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 35556654332100 010 122344455677777777720 122334566799999888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
||++++|......+.+.+.++.+. ++++|+...+...+|+++.+-.
T Consensus 168 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 168 EPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL 216 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEEC
Confidence 999999998888888888776533 7799999999999998875533
No 321
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.8e-17 Score=139.94 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++... + ..|.+++.+.... .....+++.+.+++++..
T Consensus 19 ~~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 19 KALNSVSLDFYPNEI--TALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 355666666788999 99999999999999999998732 2 2677887543211 112234556777787765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
++. .+..+++..... +... ..+.....+...++..++. +.+...+.+.++|+|+.|+ |+...+.
T Consensus 97 ~~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14239 97 PFP-MSIYENVVYGLR-------LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK 168 (252)
T ss_pred cCc-CcHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 543 455555543322 1111 2333455566677776652 1223345567899999888 6666789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++++|||++++|......+.+.+.++.+. ++++|+...+...+|+++.+-
T Consensus 169 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14239 169 IILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFL 221 (252)
T ss_pred EEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 99999999999999988888888887543 779999999999999887553
No 322
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.2e-17 Score=140.99 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|+. ++|.||||+|||||+++|++...+ ..|.+++.+.... ......++.+.+++++..
T Consensus 20 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 20 HALYDITISIPKNRV--TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeEEEECCCcE--EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 345566666688999 999999999999999999987531 2677887553211 012234455677777665
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++. .+..+++...... ....+..+....+.+.++..++. +.....+....+|+|+.|+ ++...|++
T Consensus 98 ~~~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 170 (253)
T PRK14261 98 PFP-KSIYENVAYGPRI------HGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEV 170 (253)
T ss_pred cCc-ccHHHHHHhhHHh------cCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 544 2455555432210 01112334455666667766652 2233455677899999888 66667899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+
T Consensus 171 llLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 171 ILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEE
Confidence 9999999999999888888888887643 77999999999988987754
No 323
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.7e-17 Score=141.30 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++... +. .|.+++.+.... .....+++.+.+++++..
T Consensus 35 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 35 RAVNDISMDIEKHAV--TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred eeeeceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 345566666688999 99999999999999999999753 12 677777543211 112234555777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~ 164 (287)
++. .+..+++...+. +.. .........+...++..++. +.....+.+.++|+|+.|| |+...++
T Consensus 113 ~~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~ 184 (268)
T PRK14248 113 PFP-KSIYNNITHALK-------YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA 184 (268)
T ss_pred cCc-ccHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC
Confidence 443 244444433321 111 12223344556666666652 1123345677899999888 6667789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+
T Consensus 185 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 185 VLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEE
Confidence 99999999999999998888888888543 77999999999999987755
No 324
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.59 E-value=2.7e-17 Score=152.00 Aligned_cols=187 Identities=13% Similarity=0.123 Sum_probs=127.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-C--EEEEeCCCCCCHHHHHHHHHHHHhccCCc---EEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-P--VIILNETDHLTREAQQALRRTMEKYITTC---RLIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~---~~i~ 95 (287)
+.+.++..+.+|++ ++|.||||+|||||++++++...+ . .|.+++.+.-.......+++.+.+++|+. .++.
T Consensus 275 ~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 275 RVDDVSFSLRRGEI--LGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccceeEEeCCcE--EEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 45666666788999 999999999999999999999763 2 67777754311111123344566666664 2333
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++..+...... .+...........+...++..++. .....+.+..+|+|+.|| |+...|.++++||
T Consensus 353 ~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE 429 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFC--FKMRIDAAAELQIIGSAIQRLKVK-TASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429 (500)
T ss_pred CCCHHHHhcchhhhhhc--cCCcCCHHHHHHHHHHHHHhcCcc-CCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 23333444332211100 011123334455677788888872 123456788999999998 6666689999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|......+.+.+.++.+. |+++|+...+..++++++.+
T Consensus 430 Pt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 430 PTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred CCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999888888888765 78999999999999988754
No 325
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.7e-17 Score=136.76 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+|+.+.... .....+++.+.++++...+
T Consensus 35 il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 35 AIKGIDMQFEKNKI--TALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 45555566688998 999999999999999999998742 1 678888653110 1122345567777777655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++..+... ....+..+....+.+.++..++. +.+...+.+.++|+|+.|+ |+..-++++
T Consensus 113 ~~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 185 (267)
T PRK14237 113 FA-KSIYENITFALER------AGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDIL 185 (267)
T ss_pred cc-ccHHHHHHhHHHh------cCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 44 3555665443221 11123445556677777777762 1223345567899998888 666778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 186 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 186 LMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 999999999998888888888887543 77999999999999987755
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.59 E-value=1e-16 Score=164.17 Aligned_cols=176 Identities=15% Similarity=0.102 Sum_probs=133.9
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++.++..+.+|++ ++|.||||+||||++++|++...++ .+.+++.+.- .. ....++.+++.+|+..++...++.
T Consensus 946 L~~lsl~I~~Gei--~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~-~~-~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 946 VDRLNITFYENQI--TAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TN-LDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred EEeeEEEEcCCcE--EEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECc-ch-HHHHhhcEEEEecCCcCCCCCCHH
Confidence 3444444578888 9999999999999999999998766 7778886632 22 234456677777776555555566
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++....+ ++..+.++..+.+.+.++..|+ ++...+.+.++|+|+.|| |+...++++++|||++++
T Consensus 1022 E~L~f~~~-------lkg~~~~~~~~~v~~lL~~vgL--~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGL 1092 (2272)
T TIGR01257 1022 EHILFYAQ-------LKGRSWEEAQLEMEAMLEDTGL--HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092 (2272)
T ss_pred HHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC
Confidence 66544332 2334455666677888888887 666777889999999998 666678999999999999
Q ss_pred cCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
|+..+..+.+.+.++.+. |+++|+.+.+..++|++.
T Consensus 1093 Dp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~ 1131 (2272)
T TIGR01257 1093 DPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIA 1131 (2272)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999888533 789999999999888765
No 327
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.59 E-value=6.7e-17 Score=149.32 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=127.7
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEEEe
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR---LILCA 97 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~~~ 97 (287)
.+.++..+.+|++ ++|.||||+|||||++++++...++ .|.+++.+.-.......+++.+.+++|+.. ++...
T Consensus 268 l~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 268 VNDVSFTLRKGEI--LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred cccceEEEcCCcE--EEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 4455555688888 9999999999999999999987654 677877542111111233445777777642 33333
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+....... .+...+..+..+.+..+++..++. .+...+.+.++|+|+.|| |+..-+.++++|||+
T Consensus 346 tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt 423 (501)
T PRK10762 346 SVKENMSLTALRYFSR-AGGSLKHADEQQAVSDFIRLFNIK-TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423 (501)
T ss_pred cHHHHhhhhhhhhhcc-cccccCHHHHHHHHHHHHHhcCCC-CCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 3444443221100000 011122334445677778887772 133567788999999998 666678999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.++ |+++|+.+.+..++++++.+
T Consensus 424 ~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 424 RGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM 468 (501)
T ss_pred CCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 999999999999999998764 78999999999999988755
No 328
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.9e-17 Score=139.75 Aligned_cols=182 Identities=12% Similarity=0.106 Sum_probs=122.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++... + ..|.+++.+.... .....+++.+.+++++..+
T Consensus 20 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 20 ALKGIDLDFNQNEI--TALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 45556666688998 99999999999999999999743 1 2677887653211 1122334456667766554
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..... .... ..+.....+...++..++. +.+.....+.++|+|+.|| ++...+++
T Consensus 98 ~~-~tv~~nl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 169 (252)
T PRK14255 98 FP-FSIYENVIYGLR-------LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDV 169 (252)
T ss_pred CC-CcHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 43 344444433322 1111 2222334455556665542 2233345567799999888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 170 ILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFF 220 (252)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999988888888888654 77999999999989987654
No 329
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.59 E-value=7.2e-17 Score=150.11 Aligned_cols=185 Identities=15% Similarity=0.153 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCc
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDH--LTREAQQALR-RTMEKYITTC 91 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~ 91 (287)
+.+.++..+.+|++ ++|.||||||||||+++|++.+.+ . .|.+++.+. .+.......+ +.+.+++|+.
T Consensus 24 ~l~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 24 VVNDVSLQIEAGET--LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeceEEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 55666777789999 999999999999999999999864 2 677787653 1211111222 3466666664
Q ss_pred E--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 92 R--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI-PPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 92 ~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
. +....+..+++...... ....+..+..+.+...++..|+.- .....+.+.++|+|+.|| |+...|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p 175 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSL------HRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP 175 (529)
T ss_pred hhhcCchhhHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCC
Confidence 2 22222222333222110 112345566677888888888841 112456788999999998 677778
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++++|||++++|+.....+.+.+.++.++ |+++|+.+.+..++|+++.+-
T Consensus 176 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~ 231 (529)
T PRK15134 176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231 (529)
T ss_pred CEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence 999999999999999999999999998654 789999999999999887553
No 330
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.59 E-value=3.3e-17 Score=137.98 Aligned_cols=187 Identities=11% Similarity=-0.018 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+...++..+++|+. +.|.||||+|||||+++|++.. .+. .|.+++.+.-........+..+.+++++..++...
T Consensus 16 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 16 ILRGLNLEVRPGEV--HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 45566666788999 9999999999999999999985 233 67888765321111111122355555554433322
Q ss_pred CCCCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-HH-HHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 98 NSMSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-LA-QQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~-~~s~G~~r~-----al~~l~~~~~~d 169 (287)
+....+. ......... ........+...++...++..++ ++..... .. .+|+|+.|+ |+...|.++++|
T Consensus 94 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD 170 (248)
T PRK09580 94 SNQFFLQ-TALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM--PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 170 (248)
T ss_pred hHHHHHH-HhhhhhhcccccccchHHHHHHHHHHHHHHcCC--ChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 2111100 000000000 01112233445666777777776 3332222 32 699998888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+...+... +++++.+
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l 219 (248)
T PRK09580 171 ESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 219 (248)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEE
Confidence 999999999988888888888653 7799998888776 6765533
No 331
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-16 Score=137.38 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=125.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C---C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G---P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~---~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+..|++ ++|.||||+|||||+++|++... + . .|.+|+.+.... .....+++.+.+++++..+
T Consensus 54 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 54 AVKKVNADILSKYV--TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 34455555678888 99999999999999999999642 2 2 677887542111 1112345567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..+.. +... +.....+.+...++..++. +.+...+.+..+|+|+.|| |+...+++
T Consensus 132 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~l 203 (286)
T PRK14275 132 FP-KSIFDNIAYGPR-------LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEI 203 (286)
T ss_pred Cc-cCHHHHHHhHHH-------hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 43 244555543321 1111 2334455666677776652 2344456678899999888 66667899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|||++++|......+.+.+.++... |+++|+...+..++++++.+-
T Consensus 204 llLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~ 255 (286)
T PRK14275 204 LLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFY 255 (286)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999888888888887653 779999999999999877553
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.59 E-value=5.5e-17 Score=139.06 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------EEEEeCCCCCC--HHHHHHHHH-HHHhccC
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------VIILNETDHLT--REAQQALRR-TMEKYIT 89 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------~i~ide~d~l~--~~~~~~l~~-~i~~~~~ 89 (287)
..+++.++..+..|+. +.++|.||||||-.+..+.+.+..+ -|.+++.|.+. +.....++- .+..++|
T Consensus 23 ~~aVk~isf~i~~GEt--lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 23 VEAVKGISFDIEAGET--LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred eEeeccceeeecCCCE--EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3456777777799999 9999999999999999999998753 78889888654 333333332 2444454
Q ss_pred CcE--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHH
Q psy2281 90 TCR--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILM 161 (287)
Q Consensus 90 ~~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~ 161 (287)
++. +-+..+....+.++++- -...+.++.+.++.+.++..|+.-++ ....+..++|||+.+| |+..
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~------Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRL------HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHH------HhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 431 11111111235555542 24678888999999999999996433 3457789999999999 6666
Q ss_pred HHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.|++++.||||+++|......+.++++++..+ +++||+..-+.++.|+++.+
T Consensus 175 ~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM 231 (534)
T COG4172 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM 231 (534)
T ss_pred CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence 78999999999999999999999999999887 78999999999999999855
No 333
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.59 E-value=2.3e-17 Score=134.23 Aligned_cols=165 Identities=18% Similarity=0.065 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|+. ++|.||||+|||||++++++...+. .|.+++.+.-... ..+++.+.+.+++..++...+.
T Consensus 15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 15 LFEGLSFTLNAGEA--LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch--HHhhhheEEeccCcccccCCcH
Confidence 44555666688988 9999999999999999999987655 6778875422111 1233445555555443332333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +.... ...+...++..++ ++.....+.++|+|+.|+ |+...|+++++|||+++
T Consensus 91 ~~~l~~~~~-------~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 91 LENLHFWAA-------IHGGA----QRTIEDALAAVGL--TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHH-------HcCCc----HHHHHHHHHHcCC--HHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 333322111 11111 2345566666676 455566788999999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKL 203 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~ 203 (287)
+|......+.+.+.++.+. ++++|+...+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 9998888888888877543 6688876443
No 334
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.6e-16 Score=134.01 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh---CC----CEEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL---YG----PVIILNETDHLTRE-AQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~---~~----~~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++.. .+ ..|.+|+.+..... ....+++.+.+++++..+
T Consensus 18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 18 ALKGISMEIEEKSV--VAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EEeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 34455556688998 9999999999999999999862 21 26788876532211 123445567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..... .... ..+...+.+...++..++. +.+...+...++|+|+.|| |+...|++
T Consensus 96 ~~-~tv~~nl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 96 FP-KSIFENVAYGLR-------VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred Cc-ccHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 43 344455443322 1111 2233445666777777763 1223445577899999888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+...+|+++.+
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 9999999999999998888888887543 77999999999999987755
No 335
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.58 E-value=8.9e-17 Score=134.75 Aligned_cols=155 Identities=17% Similarity=0.079 Sum_probs=106.5
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
.+|++ ++|.||||+|||||+++|++...+. .|.+++. .+.+.+++....+..+..+++.....
T Consensus 23 ~~Ge~--~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 23 SESEV--IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCCCCCCHHHHHHHHhh
Confidence 45677 9999999999999999999987654 5666652 13333343322222222222211110
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW 183 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~ 183 (287)
. .. .. .....++++..++ ++...+.+.++|+|+.|+ |+...+.++++|||++.+|......+
T Consensus 88 ~------~~--~~---~~~~~~~l~~l~l--~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 88 D------FY--TH---PYFKTEIAKPLQI--EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred h------cc--cc---HHHHHHHHHHcCC--HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 00 00 1223455666666 455566788999999888 66677899999999999999999989
Q ss_pred HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 155 ~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l 189 (246)
T cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189 (246)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 8999988653 78999999999999987644
No 336
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.7e-17 Score=139.94 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+ ..|.+++.+.... .....+++.+.+++++..+
T Consensus 19 il~~~s~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 19 VLKNINMDFPERQI--TAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred EecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 45566666688998 999999999999999999998764 2677887553211 1122345567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+. .+..+++..... +... ..+...+.+...++..++. +.+...+.+.++|+|+.|+ |+..-|++
T Consensus 97 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 168 (251)
T PRK14249 97 FP-KSIFDNVAFGPR-------MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEV 168 (251)
T ss_pred Cc-CcHHHHHhhHHH-------hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 43 244455443221 1111 2233444555566666652 1223345567799999888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+-
T Consensus 169 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 169 ILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL 220 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence 9999999999999888888888887432 779999999999999887553
No 337
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.58 E-value=8.8e-18 Score=134.78 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||++++++...+. .|.+|+.+..........++.+.+.+++..
T Consensus 15 ~l~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------- 85 (182)
T cd03215 15 AVRDVSFEVRAGEI--VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK------- 85 (182)
T ss_pred eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc-------
Confidence 44555555678888 9999999999999999999987655 777887553211111122222333332210
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
...+ +...+..+..... . .+|+|+.|+ |+...+.++++|||+++
T Consensus 86 ~~~~------------~~~~t~~e~l~~~---~----------------~LS~G~~qrl~la~al~~~p~llllDEP~~~ 134 (182)
T cd03215 86 REGL------------VLDLSVAENIALS---S----------------LLSGGNQQKVVLARWLARDPRVLILDEPTRG 134 (182)
T ss_pred cCcc------------cCCCcHHHHHHHH---h----------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcC
Confidence 0001 1111111111000 0 077777776 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 135 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l 177 (182)
T cd03215 135 VDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVM 177 (182)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 9999999998888888653 77999999898888876543
No 338
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.2e-17 Score=152.56 Aligned_cols=188 Identities=12% Similarity=0.080 Sum_probs=126.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR---LILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~~ 96 (287)
+++.++..+.+|++ +.|.||||||||||+++|++...+. .|.+++.+.-........++.+.+++|+.. ++..
T Consensus 268 ~l~~isl~i~~Ge~--~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEI--VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 44555556688988 9999999999999999999987644 677776442111111233445666666542 3333
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..+...+.....+ ..+.....+.+.+.++..++. .+...+.+.++|+|+.|| ++...++++++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 346 HSVADNINISARRHHLRAGC-LINNRWEAENADRFIRSLNIK-TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred CCHHHHhccccchhhccccc-ccChHHHHHHHHHHHHhcCcc-cCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 34444443221110000000 012223334567777777772 133567788999999998 56666899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. |+++|+.+.+..++++++.+
T Consensus 424 t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l 469 (501)
T PRK11288 424 TRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM 469 (501)
T ss_pred CCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence 9999999999999999888764 78999999999999988754
No 339
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2e-17 Score=139.62 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++.+.+ ..|.+++.+.-.. .....+++.+.+++++..
T Consensus 18 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 18 QAVKNVNLDVQRGTV--NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EeeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 355666666788999 999999999999999999998642 2677787542110 112234555777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++...+..+++.....- ......++..+.+...++..++. +.+.....+.++|+|+.|| |+...|.+
T Consensus 96 ~~~~~t~~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKL------AGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred cCcCCCHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 54444555554332210 01112334445555555555441 1223344567899999888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+-
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFL 221 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999888888888887533 779999999999999887553
No 340
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.58 E-value=2.3e-16 Score=128.52 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+||||++++|++...+. -|.+|+.+. .. ....+++.+.++++...+....+.
T Consensus 16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~-~~-~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 16 LLQQISFHLPAGGL--LHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-KK-DLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred EEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc-cc-CHHHHHhheEEeccccccCcCCCH
Confidence 45566666688999 9999999999999999999987655 778887653 21 123345556666665544333344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... . ... ...+...++..++ .+.....+..+|+|+.|+ |+...|.++++|||+++
T Consensus 92 ~~~~~~~~~-------~-~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 92 RENCLYDIH-------F-SPG----AVGITELCRLFSL--EHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred HHHHHHHHh-------c-Ccc----hHHHHHHHHHcCC--chhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 444332211 1 111 1245666676676 444455667899999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLE 205 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~ 205 (287)
+|......+.+.+.++.+. ++++|+...+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 9999988888888887544 678888766654
No 341
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.3e-16 Score=118.73 Aligned_cols=181 Identities=18% Similarity=0.181 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC----CCCC---HHHHHHHHHHHHhccCCcE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET----DHLT---REAQQALRRTMEKYITTCR 92 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~----d~l~---~~~~~~l~~~i~~~~~~~~ 92 (287)
+...++..++.|++ +++.||+|+||||+++++-+...++ .|.+.-. |... .+....-++++++++|-.+
T Consensus 26 V~~~vslsV~aGEC--vvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 26 VLRNVSLSVNAGEC--VVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeceeEEecCccE--EEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 35566667789999 9999999999999999999888766 4444422 2222 2223344667999999888
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.|+-.+..+-+.+|+..| ..+.+.........+.+.++ ++.... ..+..|||+.|| .+...-.++
T Consensus 104 viPRV~aLdVvaePll~~-------gv~~~~a~~~a~~Ll~rLnl--perLW~LaPaTFSGGEqQRVNIaRgfivd~pIL 174 (235)
T COG4778 104 VIPRVSALDVVAEPLLAR-------GVPREVARAKAADLLTRLNL--PERLWSLAPATFSGGEQQRVNIARGFIVDYPIL 174 (235)
T ss_pred hccCcchHHHHHhHHHHc-------CCCHHHHHHHHHHHHHHcCC--CHHHhcCCCcccCCchheehhhhhhhhccCceE
Confidence 888877888888888744 56777888888888888887 555443 356789998887 455555677
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||+.++|..++..+.++|.+-... +-+-||.+.-+.++|++.++
T Consensus 175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~ 225 (235)
T COG4778 175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225 (235)
T ss_pred EecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeec
Confidence 899999999999998888888776554 44678888888888887654
No 342
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.57 E-value=3.8e-13 Score=126.31 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=117.1
Q ss_pred ccCCCCCCCccCcHHHHHHHHHHHhc---CCCC-c-EEEeCCCCCcHHHHHHHHHHHhC-----------------CC--
Q psy2281 7 KYRPNNLQKLDFHCKQANHLRNLLKE---GDFP-H-LLFYGPSGAGKKTRIMALLKELY-----------------GP-- 62 (287)
Q Consensus 7 k~~p~~~~~~~~~~~~~~~l~~~~~~---g~~~-~-~~l~Gp~G~GKTtl~~~l~~~~~-----------------~~-- 62 (287)
-|.| +.+.+.+...+.|..++.. |..| + ++|+|+||+|||++++.+++.+. +.
T Consensus 751 DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 751 DVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred ccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4667 4567777666655555522 3333 3 57999999999999999876551 00
Q ss_pred --------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccC-C--cEEEE
Q psy2281 63 --------------------------------------------VIILNETDHLTREAQQALRRTMEKYIT-T--CRLIL 95 (287)
Q Consensus 63 --------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~-~--~~~i~ 95 (287)
+|++||+|.+....+..|+..+..+.. . ..+|.
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 799999999886666777766664422 2 23445
Q ss_pred EeCC---CCCCcHHHhcccce--eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHhh
Q psy2281 96 CANS---MSQVIPAIRSRCLC--IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ---QSDRNLRRAILMCEASKV 167 (287)
Q Consensus 96 ~~~~---~~~l~~~l~sr~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~s~G~~r~al~~l~~~~~ 167 (287)
++|. ++.+.+.++||+.. +.|++++.+++..+|...++...-.+++++++++++ ..+||+|+|+..+..+..
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 5554 34577889999853 889999999999999999886544579999999998 778999999999987765
Q ss_pred c
Q psy2281 168 Q 168 (287)
Q Consensus 168 ~ 168 (287)
.
T Consensus 988 i 988 (1164)
T PTZ00112 988 N 988 (1164)
T ss_pred h
Confidence 4
No 343
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.9e-17 Score=139.48 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCC-HHHHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLT-REAQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~ 92 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+ ..|.+|+.+... ......+++.+.+++++..
T Consensus 24 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 24 LAVKNVWLDIPKNQI--TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEeecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 355666777788999 999999999999999999997641 267788754211 0012234556777777765
Q ss_pred EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
++. .+..+++..+.. ..... .+..+.+...++..++. +.....+.+.++|+|+.|+ |+...|++
T Consensus 102 ~~~-~tv~enl~~~~~-------~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 172 (264)
T PRK14243 102 PFP-KSIYDNIAYGAR-------INGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEV 172 (264)
T ss_pred ccc-ccHHHHHHhhhh-------hcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 443 244455433221 11111 12233444455555551 1122334566799999888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 173 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFF 223 (264)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999988888888887644 77999999999999988755
No 344
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.2e-17 Score=140.77 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|++ ++|.||||+|||||++++++...+ . .|.+|+.+.... .....+++.+.+++++..+
T Consensus 40 il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 40 ALFDISMRIPKNRV--TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred EeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 45556666688999 999999999999999999998652 2 677887653211 1122345567777776654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+.. +..+++..... +... ..+...+.+...++..++. +.+...+...++|+|+.|| |+...+++
T Consensus 118 ~~~-tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 189 (272)
T PRK14236 118 FPK-SIYENVVYGLR-------LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEV 189 (272)
T ss_pred Ccc-cHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCE
Confidence 432 44455433221 1111 2233445566666666662 1122334567899999888 66677899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+...+++++.+-
T Consensus 190 llLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 241 (272)
T PRK14236 190 LLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMY 241 (272)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 9999999999999888888888887644 779999999999899887553
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.57 E-value=2e-16 Score=126.67 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||++++++...+. .|.+++.+..... ...+++.+.++++
T Consensus 14 ~l~~~~~~i~~G~~--~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~~~~i~~~~q---------- 80 (180)
T cd03214 14 VLDDLSLSIEAGEI--VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS-PKELARKIAYVPQ---------- 80 (180)
T ss_pred eEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC-HHHHHHHHhHHHH----------
Confidence 34455555678888 9999999999999999999987654 6777765431111 1123334554444
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.++..++ .+.....+..+|+|+.|+ |+...|.++++|||+++
T Consensus 81 -------------------------------~l~~~gl--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 -------------------------------ALELLGL--AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred -------------------------------HHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 3333444 333344566788888777 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999988888889888663 77999999888888876643
No 346
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.9e-17 Score=140.16 Aligned_cols=182 Identities=12% Similarity=0.085 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+ ..|.+++.+.... .....+++.+.+++++..+
T Consensus 35 ~l~~vs~~i~~Ge~--~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 35 ALVDVHLKIPAKKI--IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred EEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 45566666688999 999999999999999999987631 2678888653211 1122345567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+. .+..+++..... +..... ...+.+...++..++. +.+...+.+.++|+|+.|| |+..-|+++
T Consensus 113 ~~-~tv~~nl~~~~~-------~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ll 183 (274)
T PRK14265 113 FP-KSIYENIAFAPR-------ANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVL 183 (274)
T ss_pred cc-ccHHHHHHhHHH-------hcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEE
Confidence 43 244444433211 111111 1223345555555652 1223334567799999888 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+.
T Consensus 184 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 184 LMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999998888888887543 779999999999999887653
No 347
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=2.1e-15 Score=123.29 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhc-cCCcEEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKY-ITTCRLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~-~~~~~~i~~~~ 98 (287)
++..++..+.+|+. +.+.||||+||||+++.+.+.+.|. .|-+.+.+-.. .+.+..+.++.+ .+...+.....
T Consensus 39 AVqdisf~IP~G~i--vgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~--~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 39 AVQDISFEIPKGEI--VGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR--RREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhheeeeecCCCcE--EEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch--hHHHHHHHHHHHhhhhheeeeech
Confidence 34445555577888 9999999999999999999998877 66666665333 334444445443 23334444433
Q ss_pred CCCC--CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 99 SMSQ--VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 99 ~~~~--l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
..+. +... +...+.++..+++....+-.++ ++.....+..+|-|+.+| ++..-|+++++|||
T Consensus 115 ~~ds~~v~~~---------Iy~Ipd~~F~~r~~~l~eiLdl--~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 115 ALDSLEVLKL---------IYEIPDDEFAERLDFLTEILDL--EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhhHHHHHH---------HHhCCHHHHHHHHHHHHHHhcc--hhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 2222 2222 3456777888888877777777 667778888999998888 44445788999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|-++|......+.+.+++..+. ++.+|+..++...|++++.+
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I 230 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI 230 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEe
Confidence 9999999999999888888765 77999999999999999854
No 348
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=5.7e-17 Score=126.18 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=142.4
Q ss_pred cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC-CCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281 17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE-TDHLTREAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide-~d~l~~~~~~~l~~~i~~~~~~~~~ 93 (287)
++...++..++..+..|+. =+++||||+||||++-+|++...+. -+++|+ .|.........-+..++.-+|.+.+
T Consensus 15 F~GF~Aln~ls~~v~~Gel--r~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 15 FGGFKALNDLSFSVDPGEL--RVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EcceeeeeeeEEEecCCeE--EEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 4455666777777788988 8999999999999999999998877 777887 5533322233445668888888888
Q ss_pred EEEeCCCCCCcHHHhccccee--ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCI--RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+...++.+|+..+.+..-.++ -|...+ .+-+.++..++...|+ .+......+.+|.|+.|. .+...|+++
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL--~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lL 169 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGL--GDERDRLAALLSHGQKQWLEIGMLLAQDPKLL 169 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHccc--chhhhhhhhhhccchhhhhhhheeeccCCcEE
Confidence 888888888766554322111 122222 2344567777777787 778888888999999888 677788999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
++|||+.++........-+++..++.. +++.||+..+..+.+++-.
T Consensus 170 LlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTV 218 (249)
T COG4674 170 LLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTV 218 (249)
T ss_pred EecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEE
Confidence 999999998877666777788888766 6799999999999887653
No 349
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.56 E-value=2.8e-17 Score=138.71 Aligned_cols=188 Identities=13% Similarity=0.036 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHH-HHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRR-TMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~-~i~~~~~~~~~i~~ 96 (287)
+++.++..+.+|+. ++|.||||+|||||+++|++.. .+. -|.+|+.+.-... .....+ .+.+++++..++..
T Consensus 22 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 22 ILKGLNLSINKGEI--HAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred eeecceeEEcCCcE--EEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-hhhhheeeEEEEecccccccc
Confidence 55666666788999 9999999999999999999962 222 6777875421111 111111 12233333322221
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA-QQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.+..+++................+..+....+...++..++. +....+.+. .+|+|+.|| |+...|.++++||
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 177 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD-PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE 177 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc-hhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 122222211111000000011122334455667777777773 123345555 499999888 7777789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l 213 (287)
|++++|......+.+.+.++.+. |+++|+...+..+ +++++.+
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l 225 (252)
T CHL00131 178 TDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM 225 (252)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence 99999999999888888888653 7899999888776 6776544
No 350
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.56 E-value=1.3e-16 Score=147.68 Aligned_cols=182 Identities=16% Similarity=0.094 Sum_probs=122.7
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCc---EEEE
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTC---RLIL 95 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~---~~i~ 95 (287)
++.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+. .... ...++.+.+++++. .++.
T Consensus 279 l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~--~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 279 FRNISLEVRAGEI--LGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA--QRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred ccceeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHH--HHHhCCcEECCCChhhCCccC
Confidence 3445555578888 9999999999999999999987654 677776432 2221 12233466666542 1222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
..+..+++......+. .+. .......+.+..+++..++. .+...+.+.++|+|+.|| |+..-+.++++||
T Consensus 355 ~~t~~~~l~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRR---GFW-IKPARENAVLERYRRALNIK-FNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhh---ccc-cChHHHHHHHHHHHHHcCCC-CCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 2222233321101100 010 11223345567778888873 134566788999999998 6667789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|......+.+.+.++.+. |+++|+.+.+..++|+++.+
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM 476 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999999999988764 78999999999999988755
No 351
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.4e-16 Score=133.52 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++.+.+ . .|.+|+.+.... .....+++.+.+++++..+
T Consensus 23 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 23 AVRDSHVPIRKNEI--TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 44555666688999 999999999999999999998753 1 778887653211 1122345567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+ ..+..+++..... +... ..+....+...++..++. +.........++|+|+.|+ |+...+.++
T Consensus 101 ~-~~tv~enl~~~~~-------~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (261)
T PRK14263 101 F-SMSIFDNVAFGLR-------LNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVL 171 (261)
T ss_pred c-cccHHHHHHHHHh-------hcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4 3455555544322 1111 123345666777777762 1112223456799999888 666778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999998888888888543 77999999999998987654
No 352
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=6.9e-17 Score=134.87 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus 17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 17 VLRDISLDIPAGET--VALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV-RDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred ceeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh-hhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 44555556688988 9999999999999999999998654 677776432 11112334566777777765442 344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHH-----HHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSV-----LTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++.... ......+.... +.+.++.....+.......+..+|+|+.|+ |+...|+++++|
T Consensus 93 ~enl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD 163 (234)
T cd03251 93 AENIAYGR---------PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD 163 (234)
T ss_pred HHHhhccC---------CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 34432210 11122222221 222233221111222334466899999888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
||++++|......+.+.+.++.+. ++++|+...+.. +++++.+-.
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~ 211 (234)
T cd03251 164 EATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLED 211 (234)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecC
Confidence 999999999988888888877543 778999988866 887765533
No 353
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.56 E-value=2.1e-17 Score=137.29 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+. ........++.+.+++++..++. .+.
T Consensus 29 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~l~~-~tv 104 (226)
T cd03248 29 VLQDVSFTLHPGEV--TALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI-SQYEHKYLHSKVSLVGQEPVLFA-RSL 104 (226)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCch-HHcCHHHHHhhEEEEecccHHHh-hhH
Confidence 55666666688999 9999999999999999999987654 677887542 11112233445666666543322 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHH-----HHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIV-----SVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++..+ +......+.. ..+...++.....+.......+.++|+|+.|+ ++..-|.++++|
T Consensus 105 ~~nl~~~---------~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 175 (226)
T cd03248 105 QDNIAYG---------LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD 175 (226)
T ss_pred HHHhccc---------cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333211 1111111111 12344455552122444556678899999888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
||++++|......+.+.+.++.+. ++++|+...+.. +++++.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~ 220 (226)
T cd03248 176 EATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILV 220 (226)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEE
Confidence 999999999988888888877543 778999888754 666543
No 354
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.1e-16 Score=137.69 Aligned_cols=183 Identities=16% Similarity=0.113 Sum_probs=129.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTRE-AQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+.+|+. ++|.||+|||||||+++|++.... ..|.+|+.+..... ....+++.+.++++.+.+
T Consensus 97 ~L~~is~~I~~Ge~--v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 97 VLHDLNLDIKRNKV--TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45555556688888 999999999999999999998742 27888987642111 123456678888887654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHH-HHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEE-IVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
+ ..+..+|+..+.. +...+.++ ..+.....++..++. +.....+....+|+|+.|| |+..-+.+
T Consensus 175 ~-~~ti~eNi~~~~~-------~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~I 246 (329)
T PRK14257 175 F-EMSIFDNVAYGPR-------NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEV 246 (329)
T ss_pred C-CCcHHHHHHhHHH-------hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 3 3455566653221 22233333 333455666666652 2334456677899999888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|||++++|..+...+.+.+.++.+. ++++|+...+..++|+++.+-
T Consensus 247 lLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~ 298 (329)
T PRK14257 247 LLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFY 298 (329)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999998888888888887654 779999999999999887553
No 355
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.7e-16 Score=131.75 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=126.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C---C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G---P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~---~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++... + . -|.+|+.+.... .....+++.+.+++++..+
T Consensus 18 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 18 ILKNVNLDIPKNSV--TALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 44555556678888 99999999999999999999753 1 2 677888653211 1123456678888877655
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+.. +..+++...... ....+.+...+.+...++..++. +.+........+|+|+.|+ |+..-++++
T Consensus 96 ~~~-t~~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 168 (250)
T PRK14266 96 FPK-SIFDNVAYGLRI------HGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168 (250)
T ss_pred Ccc-hHHHHHHhHHhh------cCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 442 455555433221 11123344566777777777762 1222234456799998888 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l 218 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFF 218 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEE
Confidence 999999999999888888888887543 77999999999988876543
No 356
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.56 E-value=6.9e-14 Score=134.27 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=125.0
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------CC----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------GP---------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------~~---------- 62 (287)
++.++.||..+++++|+++.+..+-..+..+..++++|+||||+|||++++.++..+. ..
T Consensus 171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~ 250 (731)
T TIGR02639 171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL 250 (731)
T ss_pred hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence 3567789999999999999888888888777777899999999999999999998751 00
Q ss_pred --------------------------EEEEeCCCCCCH---------HHHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281 63 --------------------------VIILNETDHLTR---------EAQQALRRTMEKYITTCRLILCANSMS-----Q 102 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~---------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~ 102 (287)
++||||+|.+.. +.++.|...++. ....+|.++|..+ .
T Consensus 251 a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~ 328 (731)
T TIGR02639 251 AGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYKNHFE 328 (731)
T ss_pred hhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHHHHhh
Confidence 999999997642 235556666652 2345555555422 3
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHHh
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNL------RRAILMCEASK 166 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~------r~al~~l~~~~ 166 (287)
..+++.+||+.+.++.|+.++..++++..... .++.++++++..++++|.+-+ .+|+..++..+
T Consensus 329 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~ 402 (731)
T TIGR02639 329 KDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAG 402 (731)
T ss_pred hhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhh
Confidence 68899999999999999999999999977665 356789999999999987643 34777776544
No 357
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=4.4e-16 Score=131.34 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=124.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCRL 93 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~ 93 (287)
+++.++..+.+|+. ++|.||||+|||||+++|++... + .-|.+++.+.... .....+++.+.+++++..+
T Consensus 20 ~l~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 20 ILFDINLDIYKREV--TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 45556666688988 99999999999999999999864 1 1677777542111 0112345567777777654
Q ss_pred EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+.. +..+++......+ .+ .....+....+...++..++.- ..........+|+|+.|+ ++...+.++
T Consensus 98 ~~~-tv~~ni~~~~~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLH----GL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred ccC-CHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 442 4445543321100 01 1123344455667778777731 112344577899999888 666678899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|+...+..++++++.+
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 172 LMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEE
Confidence 999999999999888888888887532 77999999999988987655
No 358
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.9e-16 Score=135.02 Aligned_cols=179 Identities=12% Similarity=0.028 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE--Ee
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL--CA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~--~~ 97 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+|+.+. .. ....+.+.+++++..+.. ..
T Consensus 22 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~---~~~~~~i~~v~q~~~~~~~~~~ 95 (272)
T PRK15056 22 ALRDASFTVPGGSI--AALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-RQ---ALQKNLVAYVPQSEEVDWSFPV 95 (272)
T ss_pred EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh-HH---hhccceEEEeccccccccCCCc
Confidence 34455556678988 9999999999999999999987654 677887552 11 111123555555543211 11
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++..+...+... +. .........+...++..|+ .+...+.+.++|+|+.|+ |+...|.++++|||+
T Consensus 96 ~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt 170 (272)
T PRK15056 96 LVEDVVMMGRYGHMGW--LR-RAKKRDRQIVTAALARVDM--VEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170 (272)
T ss_pred chhhheeccccccccc--cc-CCCHHHHHHHHHHHHHcCC--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1222222111000000 11 1112233455666777777 455566778899999888 666778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
+++|+.....+.+.+.++.+. ++++|+...+...+++++
T Consensus 171 ~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 171 TGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999888653 779999999999988864
No 359
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.56 E-value=6.8e-17 Score=137.35 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=126.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+++.++..+++|+. +.|+||+|+|||||+++|++.+... .|++|+.+. ..-....+++.+.+++++..++. .+..
T Consensus 19 ~l~~isl~I~~Ge~--~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i-~~~~~~~lr~~i~~v~q~~~lf~-~tv~ 94 (275)
T cd03289 19 VLENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSW-NSVPLQKWRKAFGVIPQKVFIFS-GTFR 94 (275)
T ss_pred ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEh-hhCCHHHHhhhEEEECCCcccch-hhHH
Confidence 45666677789999 9999999999999999999998633 788898763 22123456677888888765543 3444
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----------HcCCcHHH-----HHHHHHH
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ-----------QSDRNLRR-----AILMCEA 164 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-----------~s~G~~r~-----al~~l~~ 164 (287)
+++.+ +...+.++ +.+.++..|+ .+.....+.. +|+|+.|+ |+..-++
T Consensus 95 ~nl~~----------~~~~~~~~----~~~~l~~~gL--~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 95 KNLDP----------YGKWSDEE----IWKVAEEVGL--KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred HHhhh----------ccCCCHHH----HHHHHHHcCC--HHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 55432 22233333 3344555566 3444444444 89998887 7777789
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
++++|||++++|......+.+.+.++... |+++|+.+.+.. +|+++.+-.+++ +|++++.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999888888877776433 778999987765 888765533322 5566655
No 360
>PLN03211 ABC transporter G-25; Provisional
Probab=99.56 E-value=6.6e-17 Score=152.80 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+|+.+. +. ..++.+.+++|+..++..
T Consensus 82 ~iL~~vs~~i~~Ge~--~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~-~~----~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 82 TILNGVTGMASPGEI--LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP-TK----QILKRTGFVTQDDILYPH 154 (659)
T ss_pred eeeeCCEEEEECCEE--EEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC-ch----hhccceEEECcccccCCc
Confidence 345555556688888 9999999999999999999987542 678888653 21 123457777877666655
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----HHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----ALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.++.+++.....-|. -...+.++..+.+..+++..|+ ++.. .+....+|+|+.|| ++...|.++
T Consensus 155 lTV~E~l~~~a~~~~----~~~~~~~~~~~~v~~~l~~lgL--~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 155 LTVRETLVFCSLLRL----PKSLTKQEKILVAESVISELGL--TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CCHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHcCC--hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 566666654322111 0123455666778888888887 3322 12345799999998 677778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l 213 (287)
++|||++++|......+.+.+.++.+. ++++|++. .+.+.+|+++.+
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL 280 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence 999999999999999999999988754 77899987 577888887644
No 361
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5e-16 Score=139.45 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.....++..+++|+. +.|+|+|||||||+++++++...+. .|.+++.+. ..-....+++.+.+++|++. ++..|
T Consensus 335 ~~l~~l~~t~~~g~~--talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l-~~l~~~~~~k~i~~v~Q~p~-lf~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQL--TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL-RDLSPEAWRKQISWVSQNPY-LFAGT 410 (559)
T ss_pred cccCCceeEecCCcE--EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc-cccCHHHHHhHeeeeCCCCc-ccccc
Confidence 456677777788888 9999999999999999999998865 899998874 23335678899999998874 55567
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHH-----HHHHHHHHhhcC
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ----QSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~s~G~~r~-----al~~l~~~~~~d 169 (287)
..+|+..+ -+..+++++.+.+++.--.+-+.-++.....+.+ +|+|+.|| |+..-..++++|
T Consensus 411 ireNi~l~---------~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 411 IRENILLA---------RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred HHHHhhcc---------CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 77777542 1225677777777654222212111122223444 89999888 444445688899
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
|||+.+|..+...+.+.+.++.++ ++.+|....+.. +|+++.+
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vl 527 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVL 527 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEe
Confidence 999999999988888888888877 789999887776 4666544
No 362
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.55 E-value=1.8e-13 Score=117.39 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=76.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC------------CCCcHHHhcccceeecCCCCHHHHHHHHHH
Q psy2281 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM------------SQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130 (287)
Q Consensus 63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~------------~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~ 130 (287)
++||||+|.+.-+....|.+.+|... .+.+++++|.. ..++..+.+||.+++-.+++.+++.+++.-
T Consensus 281 VLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 281 VLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred eEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 99999999999999999999999754 35567776632 237778999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHH
Q psy2281 131 ICKKEGLTIPPEFALRLAQQS-DRNLRRAILMCEAS 165 (287)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~s-~G~~r~al~~l~~~ 165 (287)
.++.+++.+++++++.+.... ...+|-|+.++...
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999998764 45689898887654
No 363
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.1e-16 Score=147.60 Aligned_cols=187 Identities=15% Similarity=0.098 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR---LILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~~ 96 (287)
+.+.++..+..|++ +.|.||||||||||+++|++...+. .|.+++.+.-.......+++.+.++++... ++..
T Consensus 263 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 263 SIRDVSFDLHKGEI--LGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred ccceeeEEEeCCcE--EEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 34455555588999 9999999999999999999987654 677887542111112233444566655432 2221
Q ss_pred eCCCCCCcHH-HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 97 ANSMSQVIPA-IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~-l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.+..++.... +...... +...+.....+.+...++..++. .+...+.+.++|+|+.|| ++...|.++++||
T Consensus 341 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE 417 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNK--VGLLDNSRMKSDTQWVIDSMRVK-TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE 417 (491)
T ss_pred CcHHHheehhhhhhhccc--ccccCcHHHHHHHHHHHHhcCcc-CCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1111111111 1100000 11112334455666777777763 123567788999999999 6666789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|......+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 418 Pt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVM 464 (491)
T ss_pred CCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence 99999999999999999888765 78999999999999988755
No 364
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.55 E-value=2.6e-16 Score=148.33 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..++.|+. +.++|+||||||||+|.+.+...+. -|.+|+.| ++.-....+|+.+++++|+.. ++..+
T Consensus 487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d-l~~i~~~~lR~~ig~V~Q~~~-Lf~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD-LNDIDLASLRRQVGYVLQDPF-LFSGS 562 (709)
T ss_pred chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-HHhcCHHHHHhheeEEcccch-hhcCc
Confidence 467777777899999 9999999999999999999998876 89999988 444456789999999999874 55567
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-----KKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
..+|+... -+..+.+++.+.++... ...-..++...-+.=+.+|||+.|| |+...|+++++
T Consensus 563 I~eNi~l~---------~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 563 IRENIALG---------NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred HHHHHhcC---------CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 77776542 12234455554443321 1111111222233334588998877 77778999999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||||+++|..+.+.+.+.+.++... |+.+|....+.. +|+++.+
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~-adrIiVl 680 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVL 680 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh-ccEEEEc
Confidence 9999999999998888888888743 778998877765 5776644
No 365
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.55 E-value=6.3e-16 Score=125.44 Aligned_cols=159 Identities=11% Similarity=-0.060 Sum_probs=105.0
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
++..+++|+. ++|.||||+|||||++++++...+. .+.+|+.+... .. .+.+.+.++...+.+..+..+++
T Consensus 19 vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~-~~----~~~~~~~~~~~~~~~~~tv~~~l 91 (195)
T PRK13541 19 LSITFLPSAI--TYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN-IA----KPYCTYIGHNLGLKLEMTVFENL 91 (195)
T ss_pred EEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh-hh----hhhEEeccCCcCCCccCCHHHHH
Confidence 3344468888 9999999999999999999987655 77888765321 11 12234444443333333444444
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI 178 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~ 178 (287)
..... +.. . .+.+...++..++ ++...+...++|+|+.++ |+..-+.++++|||++++|+.
T Consensus 92 ~~~~~-------~~~-~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~ 157 (195)
T PRK13541 92 KFWSE-------IYN-S----AETLYAAIHYFKL--HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE 157 (195)
T ss_pred HHHHH-------hcc-c----HHHHHHHHHHcCC--HhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 22111 111 1 2234455666666 455566788999999888 666678999999999999998
Q ss_pred cCccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281 179 VEPDWKIYIRDTAKL----IISEQSPKKLLE 205 (287)
Q Consensus 179 ~~~~~~~~i~~l~~~----i~~~~~~~~~~~ 205 (287)
....+.+.+.+..+. ++++|+...+..
T Consensus 158 ~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 158 NRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 888887777654433 678888776655
No 366
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=8.9e-14 Score=134.63 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=122.4
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CC-----------------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----GP----------------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~----------------- 62 (287)
.+++.||..++.++|+.+.+..+-.++..+..++.+|+||||+|||++++.++..+. +.
T Consensus 177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a 256 (852)
T TIGR03345 177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA 256 (852)
T ss_pred HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc
Confidence 356789999999999999888887777777777899999999999999999998652 10
Q ss_pred --------------------------EEEEeCCCCCCH-----HHH---HHHHHHHHhccCCcEEEEEeCCCC-----CC
Q psy2281 63 --------------------------VIILNETDHLTR-----EAQ---QALRRTMEKYITTCRLILCANSMS-----QV 103 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~-----~~~---~~l~~~i~~~~~~~~~i~~~~~~~-----~l 103 (287)
++||||+|.+.. ..+ +.|...++. ....+|.++|..+ .+
T Consensus 257 g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~ 334 (852)
T TIGR03345 257 GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEK 334 (852)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhc
Confidence 899999998753 112 235555552 2345555555432 27
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHHH------HHHHHHHHh
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNLRR------AILMCEASK 166 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~r~------al~~l~~~~ 166 (287)
.+++.+||+.+.++.|+.++...++..+... .++.++++++..++++|.+-+.. |+..++..+
T Consensus 335 d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~ 407 (852)
T TIGR03345 335 DPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTAC 407 (852)
T ss_pred cHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHH
Confidence 8899999999999999999999997655543 46788999999999999765443 777776543
No 367
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=4.4e-17 Score=141.03 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTRE-AQQALRRTMEKYITTCR 92 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~ 92 (287)
.+++.++..+..|++ ++|.||||+|||||+++|++...+ . .|.+++.+..... ....+++.+.+++++..
T Consensus 59 ~iL~~is~~i~~Ge~--~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 59 HALKGVSMDIPEKSV--TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 345555666688998 999999999999999999998741 2 7778875421111 12334556777777765
Q ss_pred EEEEeCCCCCCcHHHhcccc-----eeecCCCC-HHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HH
Q psy2281 93 LILCANSMSQVIPAIRSRCL-----CIRIPAPT-HEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AI 159 (287)
Q Consensus 93 ~i~~~~~~~~l~~~l~sr~~-----~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al 159 (287)
++. .+..+++..+...+.. .......+ .+...+.+...++..++. +.+.....+.++|+|+.|| |+
T Consensus 137 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 137 PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence 443 3555555443221100 00000111 223345566677766662 1233345567899999888 67
Q ss_pred HHHHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 160 LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 160 ~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
..-++++++|||++++|......+.+.+.++.+. |+++|+...+..++++++
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~ 270 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTA 270 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE
Confidence 7778999999999999999888888888887654 779999999999999753
No 368
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=7.4e-17 Score=128.33 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +.|.||||+|||||++++++...+. .|.+++.+..... ..+++.+.+++++..
T Consensus 15 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~------- 83 (173)
T cd03230 15 ALDDISLTVEKGEI--YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYLPEEPS------- 83 (173)
T ss_pred eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--HhhhccEEEEecCCc-------
Confidence 34455555678888 9999999999999999999987654 6777775421111 112222233232211
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
+ |...+-.+.. . +|+|+.|| |+...|.++++|||+++
T Consensus 84 ---~------------~~~~tv~~~~------~-----------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 84 ---L------------YENLTVRENL------K-----------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred ---c------------ccCCcHHHHh------h-----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 1 1111111110 0 67777666 78888999999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~ 212 (287)
+|......+.+.+.++.++ ++++|+...+...+++++.
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 9999999898999888754 7789999888877776543
No 369
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.54 E-value=8.4e-17 Score=148.41 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe-
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---PVIILNETDHLTREAQQALRRTMEKYITTCRLILCA- 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~- 97 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ ..|.+++.+..........++.+.+++++..+....
T Consensus 275 il~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 275 ILHNLSWQVNPGEH--WQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred EEeeceEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 45556666688999 999999999999999999997543 167777754211111122345566666654332211
Q ss_pred CCCCCC-cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 98 NSMSQV-IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 98 ~~~~~l-~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
....++ ..+...+... +..... +..+.+..+++..++ ++ ...+.+.++|+|+.|| |+...|.++++||
T Consensus 353 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 353 TSVRNVILSGFFDSIGI--YQAVSD-RQQKLAQQWLDILGI--DKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred CcHHHHHHhcccccccc--ccCCCH-HHHHHHHHHHHHcCC--chhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111 1111100000 111122 234567778888887 44 4566788999999998 6667789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHH-HHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLE-VRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~-~~~~~~~l 213 (287)
|++++|......+.+.+.++.++ |+++|+.+.+.. ++++++.+
T Consensus 428 Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l 476 (490)
T PRK10938 428 PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476 (490)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe
Confidence 99999999999999999988653 679999998877 46766543
No 370
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.53 E-value=3.1e-16 Score=146.03 Aligned_cols=160 Identities=20% Similarity=0.216 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.++||+||||||+++.+++...+. .|.+|+.|. ..- ...+++.+.+++|++. ++..|.
T Consensus 350 vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i-~~~-~~~lr~~i~~V~Q~~~-lF~~TI 424 (529)
T TIGR02868 350 VLDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV-SSL-QDELRRRISVFAQDAH-LFDTTV 424 (529)
T ss_pred eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh-hhH-HHHHHhheEEEccCcc-cccccH
Confidence 45666666689999 9999999999999999999988766 889999874 444 6778899999999875 445567
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHHHH----HHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPEFA----LRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~----~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+..+ .+..+++++.+.++. .++ .+++... +.=..+|||+.|| |+...+.+
T Consensus 425 ~eNI~~g---------~~~~~~e~i~~al~~----a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 425 RDNLRLG---------RPDATDEELWAALER----VGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred HHHHhcc---------CCCCCHHHHHHHHHH----cCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 7776442 123456665555443 232 0111111 1223489998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccC
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQS 199 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~ 199 (287)
+++|||++++|..+...+.+.+.++.+. ++++|.
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9999999999988887777777665322 455654
No 371
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=6.7e-16 Score=131.25 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCC--CHH-HHHHHHHHHHhccCC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHL--TRE-AQQALRRTMEKYITT 90 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l--~~~-~~~~l~~~i~~~~~~ 90 (287)
.+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+++.+.- ... ....+++.+.+.+++
T Consensus 30 ~vl~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 30 QALKNINMMVHEKQV--TALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 345566666688999 999999999999999999998652 1 6777764421 111 122345556777766
Q ss_pred cEEEEEeCCCCCCcHHHhcccceeecCCCC-HHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281 91 CRLILCANSMSQVIPAIRSRCLCIRIPAPT-HEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMC 162 (287)
Q Consensus 91 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l 162 (287)
..++.. +..+++..... ..... .....+.+...++..++. +.+.......++|+|+.|+ |+...
T Consensus 108 ~~~~~~-tv~eni~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 179 (265)
T PRK14252 108 PNPFPK-SIFENVAYGLR-------IRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD 179 (265)
T ss_pred CcCCcc-hHHHHHHhHHH-------HcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 554432 44444433221 11112 222334555566655651 1222334456799998888 66677
Q ss_pred HHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281 163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+.++++|||++++|......+.+.+.++.+. ++++|+.+.+..++++++.+-
T Consensus 180 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~ 234 (265)
T PRK14252 180 PEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMY 234 (265)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 8999999999999999888888888887643 679999999999999887553
No 372
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.53 E-value=4.7e-16 Score=140.54 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
++..++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+.. +. ....+....+.
T Consensus 39 IL~nVSfsI~~GEi--vgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-----------i~---~~~~l~~~lTV 102 (549)
T PRK13545 39 ALNNISFEVPEGEI--VGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-----------IA---ISSGLNGQLTG 102 (549)
T ss_pred EEeeeEEEEeCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-----------EE---eccccCCCCcH
Confidence 34555556688988 9999999999999999999987655 6777764310 00 00001001112
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..... +...+.++..+.+..+++..++ .+...+.+..+|+|+.|| |+...|.++++|||+++
T Consensus 103 ~EnL~l~~~-------~~~~~~~e~~e~i~elLe~lgL--~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 103 IENIELKGL-------MMGLTKEKIKEIIPEIIEFADI--GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred HHHHHhhhh-------hcCCCHHHHHHHHHHHHHHcCC--hhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 222211100 1234455566667777777777 555667788999999888 66667899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKYL 227 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~ 227 (287)
+|......+.+.+.++.+. ++++|+...+..++|+++.+-.+. .+++++....
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999888888888887643 779999999999999876443222 2455555443
No 373
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.53 E-value=5.2e-16 Score=131.13 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+ . .|.+++.+. +. .....+.+.+++++....+
T Consensus 18 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i-~~--~~~~~~~i~~v~q~~~~~~ 92 (254)
T PRK10418 18 LVHGVSLTLQRGRV--LALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV-AP--CALRGRKIATIMQNPRSAF 92 (254)
T ss_pred eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec-cc--cccccceEEEEecCCcccc
Confidence 45566666688999 999999999999999999999765 3 677887653 21 1111234556665542111
Q ss_pred --EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 96 --CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 96 --~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
..+..+++..... ......+ ...+...++..++.-.. ...+.+.++|+|+.|+ |+..-|++++
T Consensus 93 ~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 93 NPLHTMHTHARETCL-------ALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred CccccHHHHHHHHHH-------HcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111111111111 0111221 24566677777773111 2345677899999888 6667789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|......+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999888888888888653 67999999999888887654
No 374
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.53 E-value=4.8e-16 Score=130.02 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=115.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..++ ..+.
T Consensus 17 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~-~~tv 92 (237)
T cd03252 17 ILDNISLRIKPGEV--VGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL-ALADPAWLRRQVGVVLQENVLF-NRSI 92 (237)
T ss_pred ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh-HhcCHHHHhhcEEEEcCCchhc-cchH
Confidence 44555556688988 9999999999999999999987654 677887552 1111223455677777776443 2344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHH-----HHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVL-----TNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++.... ...........+ ...++.....++......+.++|+|+.|+ |+...|+++++|
T Consensus 93 ~~nl~~~~---------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 163 (237)
T cd03252 93 RDNIALAD---------PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163 (237)
T ss_pred HHHhhccC---------CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 44442211 111222222111 22222222122333345567899999888 677778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+.+.+. .+++++.+
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l 209 (237)
T cd03252 164 EATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVM 209 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 999999999988888888877532 77899998875 47776544
No 375
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.53 E-value=1.6e-16 Score=126.41 Aligned_cols=139 Identities=19% Similarity=0.144 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++...+. .|.+++.+.-. .....+++.+.+++++..++. .+.
T Consensus 17 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~-~tv 92 (173)
T cd03246 17 VLRNVSFSIEPGES--LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ-WDPNELGDHVGYLPQDDELFS-GSI 92 (173)
T ss_pred ceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEccc-CCHHHHHhheEEECCCCcccc-CcH
Confidence 34455555678888 9999999999999999999987654 67777754211 111223333444333321110 000
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.++ + +|+|+.|| |+...+.++++|||+++
T Consensus 93 ~~~-------------------------l---------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 93 AEN-------------------------I---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HHH-------------------------C---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 000 0 67776666 77778899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
+|......+.+.+.++.++ ++++|+...+ ..+++++
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~ 166 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRIL 166 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEE
Confidence 9999999888888888653 7789998766 4566554
No 376
>KOG0058|consensus
Probab=99.53 E-value=1.7e-15 Score=138.80 Aligned_cols=173 Identities=15% Similarity=0.076 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..++.|+. ++++||+|+||||++..+.+...|. .|.+|+.|.- .-....+++.++.+.|++. .+.++
T Consensus 482 ~Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~-~~~~~~lr~~Ig~V~QEPv-LFs~s 557 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS-DINHKYLRRKIGLVGQEPV-LFSGS 557 (716)
T ss_pred hhhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh-hcCHHHHHHHeeeeeccce-eeccc
Confidence 367788888899999 9999999999999999999988877 9999999843 2235678899999999885 56678
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK-----KEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
..+||..+ ....+.+++....+..-. ...-.++..+-++=.++|||+.|| |+...|.++++
T Consensus 558 I~eNI~YG---------~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 558 IRENIAYG---------LDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred HHHHHhcC---------CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 88998776 336677777765554211 111112233334444688888887 88888999999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEV 206 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~ 206 (287)
||.|+++|..+...+.+.+.++.+. +++.|....++..
T Consensus 629 DEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~A 669 (716)
T KOG0058|consen 629 DEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHA 669 (716)
T ss_pred echhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhc
Confidence 9999999988877777777766655 6677777777664
No 377
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.52 E-value=1.4e-13 Score=123.35 Aligned_cols=159 Identities=18% Similarity=0.287 Sum_probs=109.3
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHh-----------cCC-CC-cEEEeCCCCCcHHHHHHHHHHHhCCC-------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----------EGD-FP-HLLFYGPSGAGKKTRIMALLKELYGP------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~-~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~------- 62 (287)
++++++.+.+++++.|....++.+...+. -|- .| +++|+||||||||++++++++.+...
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence 57788888999999998888887777662 121 22 29999999999999999999876533
Q ss_pred ---------------------------EEEEeCCCCCCH-----------HHHHHHHHH---HHhc--cCCcEEEEEeCC
Q psy2281 63 ---------------------------VIILNETDHLTR-----------EAQQALRRT---MEKY--ITTCRLILCANS 99 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~~-----------~~~~~l~~~---i~~~--~~~~~~i~~~~~ 99 (287)
+++|||+|.+.. +.+..+... ++.. ..+..+|.++|.
T Consensus 252 eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr 331 (438)
T PTZ00361 252 ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR 331 (438)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC
Confidence 799999886521 123333333 3322 234567777777
Q ss_pred CCCCcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHHHHHHH
Q psy2281 100 MSQVIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRRAILMC 162 (287)
Q Consensus 100 ~~~l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~al~~l 162 (287)
.+.+.+++.+ |+ ..+.|+.|+.++..+++...+.+..+. ++.....++ .+|+.|++..+...
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8888888864 66 468999999999999999887766553 111233333 45666666654443
No 378
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.52 E-value=4.1e-16 Score=129.00 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus 19 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv 94 (220)
T cd03245 19 ALDNVSLTIRAGEK--VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI-RQLDPADLRRNIGYVPQDVTLFY-GTL 94 (220)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEh-HHCCHHHHHhhEEEeCCCCcccc-chH
Confidence 45556666688998 9999999999999999999987644 677776442 11111223455667777654433 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-----------HHHHcCCcHHH-----HHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-----------LAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------l~~~s~G~~r~-----al~~l~ 163 (287)
.+++... ......+ .+...++..++ .+..... +.++|+|+.|| |+...|
T Consensus 95 ~e~l~~~---------~~~~~~~----~~~~~l~~~~l--~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 95 RDNITLG---------APLADDE----RILRAAELAGV--TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred HHHhhcC---------CCCCCHH----HHHHHHHHcCc--HHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 3332111 0111222 23344555555 3322222 35899999888 666678
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
.++++|||++++|......+.+.+.++.+. ++++|+.+.. ..+++++.+
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l 211 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVM 211 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence 999999999999999998888888887653 6789998865 577766543
No 379
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.52 E-value=6.8e-16 Score=145.67 Aligned_cols=179 Identities=17% Similarity=0.143 Sum_probs=133.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+++.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+. +. ..+++.+.+++|+..++..
T Consensus 40 iL~~vs~~i~~Ge~--~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~-~~---~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 40 LLKNVSGVAKPGEL--LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI-DA---KEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred cccCCEEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC-CH---HHHhhhceeeccccccCcc
Confidence 44455555578888 9999999999999999999987542 588888653 22 3456778888888777767
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH------HHcCCcHHH-----HHHHHHHH
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA------QQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~------~~s~G~~r~-----al~~l~~~ 165 (287)
.|+.+++..+..-|. -...+.++..+.+...++..|+ ++.....+. .+|+|+.|| ++...|.+
T Consensus 114 lTV~e~l~f~~~~~~----~~~~~~~~~~~~v~~~l~~lgL--~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v 187 (617)
T TIGR00955 114 LTVREHLMFQAHLRM----PRRVTKKEKRERVDEVLQALGL--RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187 (617)
T ss_pred CcHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHHcCc--hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE
Confidence 788888766543221 0123556777788888888887 333334443 499999998 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYE 212 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~ 212 (287)
+++|||++++|......+.+.++++.+. ++++|++. ++...+|++.-
T Consensus 188 lllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239 (617)
T ss_pred EEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE
Confidence 9999999999999999999999988764 67888884 67788888763
No 380
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=3.4e-16 Score=125.14 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE-AQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
+.+.++..+.+|+. +.|.||||+|||||++++++...+. .|.+++.+.-... .....++.+.+.+++..++.
T Consensus 15 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~--- 89 (178)
T cd03229 15 VLNDVSLNIEAGEI--VALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP--- 89 (178)
T ss_pred EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCC---
Confidence 34455566688888 9999999999999999999987654 6777775421110 01122222333332211110
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+-.+.. .. . +|+|+.|| |+...++++++|||++
T Consensus 90 -------------------~~t~~~~l----------~~--~---------lS~G~~qr~~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 90 -------------------HLTVLENI----------AL--G---------LSGGQQQRVALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred -------------------CCCHHHhe----------ee--c---------CCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 11110000 00 0 67777666 7777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~ 211 (287)
++|......+.+.+.++.++ ++++|+...+..++++++
T Consensus 130 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 172 (178)
T cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172 (178)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999888764 679999988887777654
No 381
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.52 E-value=7.3e-16 Score=145.17 Aligned_cols=179 Identities=14% Similarity=0.079 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|+||+|+|||||+++|++...+. .|.+|+.+. ..-....+++.+.+++|++.+ +..|.
T Consensus 358 il~~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i-~~~~~~~~~~~i~~v~Q~~~l-f~~Ti 433 (582)
T PRK11176 358 ALRNINFKIPAGKT--VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL-RDYTLASLRNQVALVSQNVHL-FNDTI 433 (582)
T ss_pred cccCceEEeCCCCE--EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh-hhcCHHHHHhhceEEccCcee-ecchH
Confidence 55666777788999 9999999999999999999998766 888998763 322345678889999998754 44566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+..+ .....+++++.+.++.. ++...-.++...-+.=.++|||+.|| |+...+.++++|
T Consensus 434 ~~Ni~~~--------~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD 505 (582)
T PRK11176 434 ANNIAYA--------RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_pred HHHHhcC--------CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6776431 01124666666555442 11110000111111113489998888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|+.+...+.+.+.++.+. |+++|+...+. .+|+++.+
T Consensus 506 EptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l 551 (582)
T PRK11176 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVV 551 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEE
Confidence 999999999988888888877443 77999986654 47777644
No 382
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=1.3e-16 Score=132.70 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+..|+. ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus 18 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (229)
T cd03254 18 VLKDINFSIKPGET--VAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI-RDISRKSLRSMIGVVLQDTFLFS-GTI 93 (229)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH-HHcCHHHHhhhEEEecCCchhhh-hHH
Confidence 55666666788988 9999999999999999999987654 777876542 11112234455666666643322 122
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++... .......+....+. ..++.....++......+.++|+|+.|| ++...|+++++|
T Consensus 94 ~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD 164 (229)
T cd03254 94 MENIRLG---------RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD 164 (229)
T ss_pred HHHHhcc---------CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2222110 00112222222211 1222210011223334457899998888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+...+.. +++++.+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l 210 (229)
T cd03254 165 EATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVL 210 (229)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEE
Confidence 999999999888888888877432 678999988754 7776544
No 383
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.51 E-value=9.8e-16 Score=144.45 Aligned_cols=175 Identities=18% Similarity=0.168 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|+||+|+||||+++.|++.. +. .|.+|+.+. ..-....+++.+.+++|++. ++..|.
T Consensus 365 vL~~i~l~i~~G~~--vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i-~~~~~~~lr~~i~~v~Q~~~-LF~~TI 439 (588)
T PRK11174 365 LAGPLNFTLPAGQR--IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL-RELDPESWRKHLSWVGQNPQ-LPHGTL 439 (588)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEec-ccCCHHHHHhheEEecCCCc-CCCcCH
Confidence 45555556688998 9999999999999999999988 55 788998763 22235668889999999874 455566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHH-----Hh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK-----KE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~-----~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
.+|+..+ -+..+++++.+.++...- .. |+ +...-+.=..+|||+.|| |+...+.+++
T Consensus 440 ~eNI~~g---------~~~~~~eei~~al~~a~l~~~i~~lp~G~--dT~vge~G~~LSGGQrQRialARAll~~~~Ili 508 (588)
T PRK11174 440 RDNVLLG---------NPDASDEQLQQALENAWVSEFLPLLPQGL--DTPIGDQAAGLSVGQAQRLALARALLQPCQLLL 508 (588)
T ss_pred HHHhhcC---------CCCCCHHHHHHHHHHhCHHHHHHhccccc--ccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6776432 123567776666554311 11 21 112222223589998888 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|..+...+.+.+.++.+. ++++|....+.. +|+++.+
T Consensus 509 LDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl 556 (588)
T PRK11174 509 LDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVM 556 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEE
Confidence 99999999999988888888777543 789999876654 6777654
No 384
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.50 E-value=2.1e-15 Score=126.97 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +.|.||||+|||||+++|++.+.+. .|.+++. ..+.+++++..+...
T Consensus 19 vl~~vs~~i~~Ge~--~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------------~~i~~v~q~~~~~~~--- 81 (251)
T PRK09544 19 VLSDVSLELKPGKI--LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------------LRIGYVPQKLYLDTT--- 81 (251)
T ss_pred EEEeEEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------------cCEEEeccccccccc---
Confidence 44455555688988 9999999999999999999987654 5555531 124444444322111
Q ss_pred CCCCcHHHhcccceeecC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 100 MSQVIPAIRSRCLCIRIP-APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
+...+..- +.+. .... +.+...++..++ .+.....+..+|+|+.|+ |+...|.++++|||++
T Consensus 82 ---l~~~~~~~---~~~~~~~~~----~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 82 ---LPLTVNRF---LRLRPGTKK----EDILPALKRVQA--GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ---cChhHHHH---HhccccccH----HHHHHHHHHcCC--hHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 10011100 0011 1122 234556666676 555566788999999888 6667789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++.+. ++++|+...+...+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999988888888888653 77999999999999987644
No 385
>KOG0057|consensus
Probab=99.50 E-value=2e-15 Score=134.14 Aligned_cols=174 Identities=18% Similarity=0.163 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+++.++..+.+|+. +.|.|+|||||||++|+|.+..... -|.||++| +..-..+.+|+.|+.+||+..++-- |..
T Consensus 367 iL~gvsf~I~kGek--VaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~d-ik~~~~~SlR~~Ig~VPQd~~LFnd-TIl 442 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEK--VAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQD-IKEVSLESLRQSIGVVPQDSVLFND-TIL 442 (591)
T ss_pred eecceeEEecCCCE--EEEECCCCCCHHHHHHHHHHHhccCCcEEECCee-HhhhChHHhhhheeEeCCcccccch-hHH
Confidence 66777777788988 9999999999999999999998744 89999998 4444467899999999999866542 344
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL---------TIPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.|+..+ -+..+.+++.+.. ++.|+ .+...+-+.=..+|||+.|+ |+...+.++
T Consensus 443 ~NI~YG---------n~sas~eeV~e~~----k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 443 YNIKYG---------NPSASDEEVVEAC----KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred HHhhcC---------CCCcCHHHHHHHH----HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 444332 2334555555444 44444 11223444444589999988 666667888
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++||+|+.+|..+..++.+.+.+.... |++.|+...+.. +|+++-+
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l 558 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVL 558 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEE
Confidence 999999999998887777777664333 778888776665 4555533
No 386
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.50 E-value=1.6e-12 Score=110.09 Aligned_cols=105 Identities=21% Similarity=0.275 Sum_probs=87.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC------------CCCCcHHHhcccceeecCCCCHHHHHHHHHH
Q psy2281 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS------------MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN 130 (287)
Q Consensus 63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~ 130 (287)
++||||++.+.-+.+..|.+.|+... .+.+++.+|. +..++..+..|..++.-.+++.++++.+++.
T Consensus 294 VLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450)
T COG1224 294 VLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450)
T ss_pred eEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence 99999999999999999999999754 2445555553 2247888999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhhc
Q psy2281 131 ICKKEGLTIPPEFALRLAQQSD-RNLRRAILMCEASKVQ 168 (287)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~s~-G~~r~al~~l~~~~~~ 168 (287)
.++.+++.+++++++++..... .++|.|+.++......
T Consensus 373 Ra~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~ii 411 (450)
T COG1224 373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASII 411 (450)
T ss_pred hhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHH
Confidence 9999999999999999998754 4788899888754443
No 387
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.50 E-value=7.9e-16 Score=121.12 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.|.||||+|||||++++++...+. .|.+++.+.-........++.+.+.++
T Consensus 15 vl~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------- 82 (163)
T cd03216 15 ALDGVSLSVRRGEV--HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------- 82 (163)
T ss_pred EEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence 34455555688998 9999999999999999999987654 667776442110000111111111111
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
+|+|+.|+ |+...|+++++|||+++
T Consensus 83 --------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~ 112 (163)
T cd03216 83 --------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAA 112 (163)
T ss_pred --------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 56665555 77788899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.+. ++++|+...+...+++++.+
T Consensus 113 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 113 LTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998888888888653 77999998888887766543
No 388
>KOG0733|consensus
Probab=99.50 E-value=4.5e-13 Score=120.39 Aligned_cols=145 Identities=25% Similarity=0.304 Sum_probs=105.0
Q ss_pred CCCCccCcHHHHHHHHHHH----------hcCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 12 NLQKLDFHCKQANHLRNLL----------KEGDFPH--LLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~----------~~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
+|+++.|....+..|...+ .-|-.|+ ++|+||||||||.|++++++++..+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence 4888888887776666555 2254454 9999999999999999999998755
Q ss_pred -----------------EEEEeCCCCCCHH---HHH--------HHHHHHHhccC-----CcE-EEEEeCCCCCCcHHHh
Q psy2281 63 -----------------VIILNETDHLTRE---AQQ--------ALRRTMEKYIT-----TCR-LILCANSMSQVIPAIR 108 (287)
Q Consensus 63 -----------------~i~ide~d~l~~~---~~~--------~l~~~i~~~~~-----~~~-~i~~~~~~~~l~~~l~ 108 (287)
++||||+|.+++. +|. .|+..|+.+.. ..+ +|-++|.++.+.+++|
T Consensus 268 EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 268 EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 9999999998753 222 34444554432 233 4445566778999988
Q ss_pred c--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281 109 S--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157 (287)
Q Consensus 109 s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~ 157 (287)
. |+ .-+.+.-|++....+++..+|+...+. .+.....++.+..|-..-
T Consensus 348 RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 348 RAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred ccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccch
Confidence 6 34 347788899999999999999877764 244577888888775443
No 389
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=6e-16 Score=129.37 Aligned_cols=178 Identities=17% Similarity=0.156 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus 16 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (236)
T cd03253 16 VLKDVSFTIPAGKK--VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI-REVTLDSLRRAIGVVPQDTVLFN-DTI 91 (236)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh-hhCCHHHHHhhEEEECCCChhhc-chH
Confidence 44555556678988 9999999999999999999987654 677776542 11112334555677777655432 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++... ....+..+....+. ..+......++....+....+|+|+.++ |+...|+++++|
T Consensus 92 ~~nl~~~---------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD 162 (236)
T cd03253 92 GYNIRYG---------RPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD 162 (236)
T ss_pred HHHHhhc---------CCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333211 01112222222111 1111111111222333456799998888 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+...+.. +++++.+
T Consensus 163 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l 208 (236)
T cd03253 163 EATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVL 208 (236)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEE
Confidence 999999999888888888777542 678899988865 7777644
No 390
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=2.3e-11 Score=109.34 Aligned_cols=154 Identities=22% Similarity=0.305 Sum_probs=108.7
Q ss_pred CCccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C------------------------
Q psy2281 14 QKLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYG---P------------------------ 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~------------------------ 62 (287)
+.+.+.....+.+...+ ..+..++++|+||+|+|||++++.+++.+.. .
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 44667776666666655 3334455999999999999999999875410 0
Q ss_pred -------------------------------EEEEeCCCCCC----HHHHHHHHHHHHhccC-CcEEEEEeCCCC---CC
Q psy2281 63 -------------------------------VIILNETDHLT----REAQQALRRTMEKYIT-TCRLILCANSMS---QV 103 (287)
Q Consensus 63 -------------------------------~i~ide~d~l~----~~~~~~l~~~i~~~~~-~~~~i~~~~~~~---~l 103 (287)
+|+|||+|.+. .+....+.+.+..... +..+|++++..+ .+
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 78999999875 2223344444443332 344677766543 46
Q ss_pred cHHHhccc--ceeecCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHhh
Q psy2281 104 IPAIRSRC--LCIRIPAPTHEEIVSVLTNICKKE--GLTIPPEFALRLAQQS---DRNLRRAILMCEASKV 167 (287)
Q Consensus 104 ~~~l~sr~--~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---~G~~r~al~~l~~~~~ 167 (287)
.+.+++|+ ..+.|++++.+++.+++...++.. .-.+++++++.+++.+ .|+.|+|+..+.....
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 67778887 468999999999999999887642 2246889999998887 8999999998876543
No 391
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=1.1e-11 Score=110.43 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=110.8
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHhc---CC-CCcEEEeCCCCCcHHHHHHHHHHHhC--------------------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLKE---GD-FPHLLFYGPSGAGKKTRIMALLKELY-------------------- 60 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~-------------------- 60 (287)
-..|.|. ++.|.+...+.|...+.. |. .++++|+||+|+|||++++.+++.+.
T Consensus 9 ~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 9 EPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4568885 678888777777666642 33 34599999999999999998875421
Q ss_pred -----------------C--------C-------------------EEEEeCCCCCCHHHHH---HHHHH--HHhcc-CC
Q psy2281 61 -----------------G--------P-------------------VIILNETDHLTREAQQ---ALRRT--MEKYI-TT 90 (287)
Q Consensus 61 -----------------~--------~-------------------~i~ide~d~l~~~~~~---~l~~~--i~~~~-~~ 90 (287)
+ + +++|||+|.+....+. .+.+. ....+ ..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 0 0 7889999988532222 22222 12222 23
Q ss_pred cEEEEEeCCCC---CCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHH---HHcCCcHHHHHH
Q psy2281 91 CRLILCANSMS---QVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKK--EGLTIPPEFALRLA---QQSDRNLRRAIL 160 (287)
Q Consensus 91 ~~~i~~~~~~~---~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~---~~s~G~~r~al~ 160 (287)
..++++++..+ .+.+.+.+|+. .+.|++++.+++.+++...++. .+-.+++++.+.++ ..+.|+.|+++.
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 45677776653 47778888884 6899999999999999988763 12235777766654 456799999999
Q ss_pred HHHHHhh
Q psy2281 161 MCEASKV 167 (287)
Q Consensus 161 ~l~~~~~ 167 (287)
.+..+..
T Consensus 246 ~l~~a~~ 252 (365)
T TIGR02928 246 LLRVAGE 252 (365)
T ss_pred HHHHHHH
Confidence 8887654
No 392
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.49 E-value=2.5e-15 Score=126.51 Aligned_cols=172 Identities=17% Similarity=0.104 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEE-----------EeCCCCCCHHHHHHHHHH---HH
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VII-----------LNETDHLTREAQQALRRT---ME 85 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~-----------ide~d~l~~~~~~~l~~~---i~ 85 (287)
+.+.+. .+.+|++ +.+.||||+|||||++++++...+. .|. +|+.+.-. .....++. +.
T Consensus 16 ~l~~i~-~i~~Ge~--~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~ 90 (255)
T cd03236 16 KLHRLP-VPREGQV--LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN--YFTKLLEGDVKVI 90 (255)
T ss_pred hhhcCC-CCCCCCE--EEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh--hhHHhhhccccee
Confidence 455565 4678888 9999999999999999999998765 443 44433110 00111110 11
Q ss_pred hccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHH
Q psy2281 86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AIL 160 (287)
Q Consensus 86 ~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~ 160 (287)
++++...+.. .+...++... .........+..+++..|+ ++...+.+..+|+|+.|+ ++.
T Consensus 91 ~~~~~~~~~~-~~~~~~i~~~------------l~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~ 155 (255)
T cd03236 91 VKPQYVDLIP-KAVKGKVGEL------------LKKKDERGKLDELVDQLEL--RHVLDRNIDQLSGGELQRVAIAAALA 155 (255)
T ss_pred eecchhccCc-hHHHHHHHHH------------hchhHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHH
Confidence 1122211111 0111111111 1122334556677777777 455566778899999888 666
Q ss_pred HHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 161 ~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
..+.++++|||++++|......+.+.+.++.+. ++++|+...+..+++++..+
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l 212 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 778999999999999999888888888888754 77999999998888887644
No 393
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.49 E-value=4.2e-16 Score=129.01 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. -|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus 19 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~l~~-~tv 94 (221)
T cd03244 19 VLKNISFSIKPGEK--VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI-SKIGLHDLRSRISIIPQDPVLFS-GTI 94 (221)
T ss_pred cccceEEEECCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh-HhCCHHHHhhhEEEECCCCcccc-chH
Confidence 55666667788998 9999999999999999999987654 677776542 11112334556777777765432 234
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+++.. +.....++. ...++..++. +..........+|+|+.|+ |+..-|.+
T Consensus 95 ~enl~~----------~~~~~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 95 RSNLDP----------FGEYSDEEL----WQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred HHHhCc----------CCCCCHHHH----HHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 344321 112233222 2233333331 1111123566799998888 67777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+.. +++++.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~ 209 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILV 209 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEE
Confidence 9999999999999888888888776533 678898887765 565543
No 394
>PLN03232 ABC transporter C family member; Provisional
Probab=99.49 E-value=8.4e-16 Score=157.18 Aligned_cols=178 Identities=14% Similarity=0.136 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+++|+. +.|+||+|+||||++++|.+...+. .|.||+.|. ..-....+|+.+..++|++.+ +..|
T Consensus 1250 ~vL~~isl~I~~Gek--vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di-~~i~~~~lR~~i~iVpQdp~L-F~gT 1325 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEK--VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV-AKFGLTDLRRVLSIIPQSPVL-FSGT 1325 (1495)
T ss_pred cccccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEh-hhCCHHHHHhhcEEECCCCee-eCcc
Confidence 356677777789999 9999999999999999999988766 899999873 333356788999999999855 4567
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
..+|+.+ +...+++++.+.++.. ++...-.++....+.=.++|+|+.|+ |+...++++++
T Consensus 1326 Ir~NL~~----------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILIL 1395 (1495)
T PLN03232 1326 VRFNIDP----------FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395 (1495)
T ss_pred HHHHcCC----------CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 7788765 3345677766655432 11111011222222223588888777 77777899999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||+|+++|..+...+.+.+++..+. |+++|....+.. +|+++.+
T Consensus 1396 DEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL 1442 (1495)
T PLN03232 1396 DEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVL 1442 (1495)
T ss_pred ECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 9999999988887777777766433 779999988876 6877754
No 395
>KOG0730|consensus
Probab=99.49 E-value=3.9e-13 Score=121.91 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=110.5
Q ss_pred CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
.-+++++.|.++++..++..+. =|-.|+ ++||||||||||+++++++++...+
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 4578899999999998887762 242233 9999999999999999999987654
Q ss_pred --------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccCC-cEEEE-EeCCCCCCcHHHhc
Q psy2281 63 --------------------VIILNETDHLTRE-----------AQQALRRTMEKYITT-CRLIL-CANSMSQVIPAIRS 109 (287)
Q Consensus 63 --------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~~-~~~i~-~~~~~~~l~~~l~s 109 (287)
++|+||+|.+... ..+.|+.-|+-..+. ..+++ .+|.++.|++++.+
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlR 589 (693)
T KOG0730|consen 510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLR 589 (693)
T ss_pred CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcC
Confidence 9999999986533 233455555544333 34444 45556779999988
Q ss_pred --cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHH----HcCCcHHHHHHHHHHHh
Q psy2281 110 --RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQ----QSDRNLRRAILMCEASK 166 (287)
Q Consensus 110 --r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~----~s~G~~r~al~~l~~~~ 166 (287)
|+ +.+.++.|+.+...++++..+++..+ +++ .++.+++ +||.|++........++
T Consensus 590 PGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~--~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 590 PGRLDRIIYVPLPDLEARLEILKQCAKKMPF--SEDVDLEELAQATEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred CcccceeEeecCccHHHHHHHHHHHHhcCCC--CccccHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 77 57889999999999999998887766 444 4566665 56666665444444333
No 396
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.49 E-value=7e-16 Score=129.10 Aligned_cols=178 Identities=16% Similarity=0.052 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+. ........++.+.+.+++..++. .+.
T Consensus 18 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (238)
T cd03249 18 ILKGLSLTIPPGKT--VALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI-RDLNLRWLRSQIGLVSQEPVLFD-GTI 93 (238)
T ss_pred ceeceEEEecCCCE--EEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh-hhcCHHHHHhhEEEECCchhhhh-hhH
Confidence 44555556688988 9999999999999999999987654 677887542 11112223445666666644332 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++.... .....++....+. ..+......+.......+.++|+|+.|+ |+...|.++++|
T Consensus 94 ~e~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 164 (238)
T cd03249 94 AENIRYGK---------PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD 164 (238)
T ss_pred HHHhhccC---------CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33322110 0112222221111 1111110011222233456799998888 666678999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|......+.+.+.++.+. ++++|+.+.+. .+|+++.+
T Consensus 165 EP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l 210 (238)
T cd03249 165 EATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVL 210 (238)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEE
Confidence 999999999998888888877522 77899998886 68887654
No 397
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.49 E-value=4.4e-16 Score=126.17 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.+.+.++..+++|+. ++|.||||+|||||+++|++.. .+. .|.+|+.+. .. ...++.+.+.+++..+
T Consensus 23 ~~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~-~~---~~~~~~i~~~~q~~~~--- 93 (194)
T cd03213 23 QLLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL-DK---RSFRKIIGYVPQDDIL--- 93 (194)
T ss_pred cceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC-ch---HhhhheEEEccCcccC---
Confidence 356666667788999 9999999999999999999987 544 677887653 21 1122223332222111
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
|...+-.+....... + ..+|+|+.|+ |+...+.++++|||
T Consensus 94 -------------------~~~~t~~~~i~~~~~------~----------~~LS~G~~qrv~laral~~~p~illlDEP 138 (194)
T cd03213 94 -------------------HPTLTVRETLMFAAK------L----------RGLSGGERKRVSIALELVSNPSLLFLDEP 138 (194)
T ss_pred -------------------CCCCcHHHHHHHHHH------h----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111111110000 0 0677887777 77777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++++|+.. .+...+|+++.+
T Consensus 139 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence 9999999988888888888653 77899986 677777766533
No 398
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=9.1e-16 Score=121.83 Aligned_cols=139 Identities=20% Similarity=0.181 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +++.||||+|||||++++++...+. .+.+++.+. .......+++.+.+.+++..+
T Consensus 17 ~l~~i~~~i~~G~~--~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~~~~~~------ 87 (171)
T cd03228 17 VLKDVSLTIKPGEK--VAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL-RDLDLESLRKNIAYVPQDPFL------ 87 (171)
T ss_pred cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh-hhcCHHHHHhhEEEEcCCchh------
Confidence 44555556688988 9999999999999999999987654 667776432 111111222223333222111
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
|. .+ ..+.+ +|+|+.|+ |+...+.++++|||+++
T Consensus 88 ----------------~~-~t---~~e~l---------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 88 ----------------FS-GT---IRENI---------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred ----------------cc-ch---HHHHh---------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 10 00 00000 67776666 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
+|......+.+.+.++.+. ++++|+.+.+.. +++++
T Consensus 127 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~ 165 (171)
T cd03228 127 LDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRII 165 (171)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEE
Confidence 9999888888888877543 778999888766 66544
No 399
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.6e-15 Score=119.26 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
+++++.++..++.|+. ..|.||||+|||||+++|++.-... -|++|+.|...-..-+..+.-+-..+|++.=|.
T Consensus 17 keILkgvnL~v~~GEv--haiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGEV--HAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCcE--EEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 4677888888899999 9999999999999999999976544 788998886432222222222222233332222
Q ss_pred EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHcCCcHHH-----HHHHHHHHhhc
Q psy2281 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA--QQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~~s~G~~r~-----al~~l~~~~~~ 168 (287)
-.+..+.+..+...+- .-..+ ..+..+.+++.++..++ ++..+++-. ..|||+.+| ++.+.|+++++
T Consensus 95 GV~~~~fLr~a~n~~~---~~~~~-~~~~~~~~~e~~~~l~~--~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~IL 168 (251)
T COG0396 95 GVTNSDFLRAAMNARR---GARGI-LPEFIKELKEKAELLGL--DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAIL 168 (251)
T ss_pred CeeHHHHHHHHHHhhh---ccccc-cHHHHHHHHHHHHHcCC--CHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEe
Confidence 2222221222211110 01112 34677788888888887 555444433 379999888 77777999999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV 206 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~ 206 (287)
|||-|++|....+.+.+.+..+.+. +++||...-+..+
T Consensus 169 DE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred cCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 9999999988777777777777765 7788876555544
No 400
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.48 E-value=2e-12 Score=115.07 Aligned_cols=153 Identities=21% Similarity=0.298 Sum_probs=103.5
Q ss_pred CCCCCCccCcHHHHHHHHHHHh-----------cCCC-Cc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLK-----------EGDF-PH-LLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~-~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
.-+++++.|....++.++..+. -|-. |. ++|+||||||||++++++++.....
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL 220 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhc
Confidence 4468889998888777776652 1322 22 9999999999999999999876533
Q ss_pred --------------------EEEEeCCCCCCH-----------HHHHHH---HHHHHhcc--CCcEEEEEeCCCCCCcHH
Q psy2281 63 --------------------VIILNETDHLTR-----------EAQQAL---RRTMEKYI--TTCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 --------------------~i~ide~d~l~~-----------~~~~~l---~~~i~~~~--~~~~~i~~~~~~~~l~~~ 106 (287)
+|++||+|.+.. ..+..+ +..++... .+..++.++|.++.+.++
T Consensus 221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA 300 (398)
T PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 300 (398)
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence 899999987531 122233 33343322 234577788888889998
Q ss_pred Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHHHHHHHH
Q psy2281 107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ----QSDRNLRRAILMCE 163 (287)
Q Consensus 107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~s~G~~r~al~~l~ 163 (287)
+.+ |+ ..+.|+.|+.++...+++..+.+.++. .+.....++. +|+.|++..+...-
T Consensus 301 llR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred HcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 875 66 358999999999999999888877663 2223444444 45556655444443
No 401
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.48 E-value=5.5e-13 Score=128.78 Aligned_cols=136 Identities=22% Similarity=0.251 Sum_probs=101.1
Q ss_pred CccCcHHHHHHHHHHHh----c--CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------------
Q psy2281 15 KLDFHCKQANHLRNLLK----E--GDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------------- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~----~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------------- 62 (287)
+++|+..+++.+..++. . ...++++|+||||||||++++++++.+..+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~ 400 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAM 400 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCC
Confidence 36788888888777552 1 123459999999999999999999886311
Q ss_pred ----------------EEEEeCCCCCCHHH----HHHHHHHHHhc---------------cCCcEEEEEeCCCCCCcHHH
Q psy2281 63 ----------------VIILNETDHLTREA----QQALRRTMEKY---------------ITTCRLILCANSMSQVIPAI 107 (287)
Q Consensus 63 ----------------~i~ide~d~l~~~~----~~~l~~~i~~~---------------~~~~~~i~~~~~~~~l~~~l 107 (287)
++++||+|.+.... .++|+..++.. ..+..|+.++|..+.+.+++
T Consensus 401 ~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L 480 (775)
T TIGR00763 401 PGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPL 480 (775)
T ss_pred CchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHH
Confidence 89999999986532 35666665420 12355677777778899999
Q ss_pred hcccceeecCCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHH
Q psy2281 108 RSRCLCIRIPAPTHEEIVSVLTNIC-----KKE-----GLTIPPEFALRLAQQ 150 (287)
Q Consensus 108 ~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~ 150 (287)
++||.++.|++++.++...+++..+ +.. ++.++++++..+++.
T Consensus 481 ~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~ 533 (775)
T TIGR00763 481 LDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKY 533 (775)
T ss_pred hCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHh
Confidence 9999999999999999888887654 222 346788899888863
No 402
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.48 E-value=1.5e-15 Score=143.27 Aligned_cols=173 Identities=11% Similarity=0.065 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++++||+|||||||++++++...+. .|.+|+.+. +.-..+.+++.+.+++|++.++- .|.
T Consensus 356 il~~i~l~i~~Ge~--iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i-~~~~~~~l~~~i~~v~Q~~~lF~-~Ti 431 (592)
T PRK10790 356 VLQNINLSVPSRGF--VALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL-SSLSHSVLRQGVAMVQQDPVVLA-DTF 431 (592)
T ss_pred eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh-hhCCHHHHHhheEEEccCCcccc-chH
Confidence 45566666688999 9999999999999999999998766 789998763 33335678889999999886543 466
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC-----C----CHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT-----I----PPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~----~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+.. +...+++++.+.+ +..|+. + +....+.=..+|||+.|| |+...+.+
T Consensus 432 ~~NI~~----------~~~~~d~~i~~a~----~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 432 LANVTL----------GRDISEEQVWQAL----ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred HHHHHh----------CCCCCHHHHHHHH----HHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 666643 2234555554443 333431 1 111111123488998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|..+...+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 498 lllDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ii~l 547 (592)
T PRK10790 498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADTILVL 547 (592)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEE
Confidence 9999999999999888888888777543 779999866664 6776644
No 403
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.48 E-value=2.4e-15 Score=140.10 Aligned_cols=170 Identities=19% Similarity=0.119 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.++||+|+|||||++.+++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..|.
T Consensus 337 il~~i~l~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i-~~~~~~~lr~~i~~v~Q~~~lf-~~ti 412 (529)
T TIGR02857 337 ALRPVSFTVPPGER--VALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL-ADADADSWRDQIAWVPQHPFLF-AGTI 412 (529)
T ss_pred cccceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh-hhCCHHHHHhheEEEcCCCccc-CcCH
Confidence 56666667788998 9999999999999999999988766 788998763 2222456788899999887544 4566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL---------TIPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+..+ .+..+++++.+.++. .++ .++...-+.-..+|||+.|| |+...+++
T Consensus 413 ~~Ni~~~---------~~~~~~~~i~~a~~~----~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i 479 (529)
T TIGR02857 413 AENIRLA---------RPDASDAEIRRALER----AGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL 479 (529)
T ss_pred HHHHhcc---------CCCCCHHHHHHHHHH----cCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 6666432 122355555544433 232 11222222334589998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTR 209 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~ 209 (287)
+++|||++++|..+...+.+.+.++.+. ++++|+...+. .+|+
T Consensus 480 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~ 525 (529)
T TIGR02857 480 LLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADR 525 (529)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCE
Confidence 9999999999999988888888776433 77899886654 3444
No 404
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1.1e-15 Score=124.52 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++... +. .|.+++.+..... ...++.+.+.+++..++..
T Consensus 22 il~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 22 ILKDFSGVVKPGEM--VLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--EKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred eeeeEEEEECCCcE--EEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--hhhcceEEEEecccccCCC
Confidence 44555566688988 99999999999999999999876 33 6778876532111 1222233443433222222
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++.... . . . ..+.+..+|+|+.|+ |+...|.++++|||
T Consensus 98 ~tv~~~l~~~~----------------------~-~---~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEP 145 (202)
T cd03233 98 LTVRETLDFAL----------------------R-C---K------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNS 145 (202)
T ss_pred CcHHHHHhhhh----------------------h-h---c------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 22222211100 0 0 0 123456788888887 77777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHh-ccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IIS-EQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~-~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++. +|..+.+...+++++.+
T Consensus 146 t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 146 TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 9999999999999999988653 343 45557777777766533
No 405
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1.1e-15 Score=123.63 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+++|++ ++|.||||+|||||+++|++... +. .+.+|+.+. . ..+++.+.+.++...++...
T Consensus 22 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~-~----~~~~~~i~~~~q~~~~~~~~ 94 (192)
T cd03232 22 LLNNISGYVKPGTL--TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL-D----KNFQRSTGYVEQQDVHSPNL 94 (192)
T ss_pred eEEccEEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh-H----HHhhhceEEecccCccccCC
Confidence 34455555678888 99999999999999999998642 22 677887542 1 22233344444332221111
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..+++ .... .+ .++|+|+.|+ |+..-+.++++|||+
T Consensus 95 tv~~~l----------------------~~~~-~~---------------~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 95 TVREAL----------------------RFSA-LL---------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred cHHHHH----------------------HHHH-HH---------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 111111 1100 00 0678887777 777778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++.+. ++++|+.+ .+...+|+++.+
T Consensus 137 ~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 999999998888888887653 77999987 467777766543
No 406
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.47 E-value=9.2e-16 Score=146.99 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=122.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++++||+|||||||++.+++...+. .|.+|+.+. ..-..+.+++.+.+++|++.+ +..|.
T Consensus 468 vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~l-f~gTI 543 (686)
T TIGR03797 468 ILDDVSLQIEPGEF--VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL-AGLDVQAVRRQLGVVLQNGRL-MSGSI 543 (686)
T ss_pred ceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc-CcCCHHHHHhccEEEccCCcc-CcccH
Confidence 55666666688998 9999999999999999999998766 899998763 222355688899999998865 44566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~ 163 (287)
.+|+.. ..+.+++++.+.++ ..++ .+... +.-..+|||+.|| |+...+
T Consensus 544 ~eNi~~----------~~~~~~e~i~~al~----~a~l--~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 544 FENIAG----------GAPLTLDEAWEAAR----MAGL--AEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred HHHHhc----------CCCCCHHHHHHHHH----HcCc--HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 666543 22245555554443 3343 11111 1123589998888 777778
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
.++++|||++++|..+...+.+.+.++... ++++|....+.. +|+++.+
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl 657 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVL 657 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEE
Confidence 999999999999998888877777766322 779999877765 6776644
No 407
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.47 E-value=4e-15 Score=118.96 Aligned_cols=141 Identities=18% Similarity=0.119 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||++++++...+. .|.+++.+. ... ...+++.+.+++++..++. .+.
T Consensus 17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~-~~~-~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 17 VLKNLSLELKQGEK--IALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV-SDL-EKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred ceEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEH-HHH-HHHHHhhEEEEccCCeeec-ccH
Confidence 44455555678988 9999999999999999999987654 677887542 111 2233333444444332211 111
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++ ...+|+|+.|+ |+...++++++|||+++
T Consensus 92 ~~~i-------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 92 RNNL-------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred HHhh-------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 1110 44577777666 78888899999999999
Q ss_pred ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
+|......+.+.+.++.+. ++++|+...+. .+++++
T Consensus 129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~ 167 (178)
T cd03247 129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKIL 167 (178)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEE
Confidence 9998888888888776432 67889988775 456554
No 408
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.47 E-value=9e-13 Score=121.52 Aligned_cols=154 Identities=20% Similarity=0.257 Sum_probs=106.1
Q ss_pred cCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------- 62 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------- 62 (287)
....+|+++.|.+.++..+..++. ....|. ++|+||||||||++++++++....+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 345689999999888776666552 133343 9999999999999999999876433
Q ss_pred ---------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhccCC--cEEEEEeCCCCCCcH
Q psy2281 63 ---------------------VIILNETDHLTRE--------------AQQALRRTMEKYITT--CRLILCANSMSQVIP 105 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~ 105 (287)
+|+|||+|.+... ..+.++..|+...++ ..+|.++|.++.+.+
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 9999999886422 123344445544332 234555666678999
Q ss_pred HHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHHH
Q psy2281 106 AIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----SDRNLRRAILMC 162 (287)
Q Consensus 106 ~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~G~~r~al~~l 162 (287)
++++ |+ ..+.++.|+.++..++++..+....+. ++.....+++. |++|++.+++..
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9987 55 368899999999999999888766553 23345556654 556777666543
No 409
>PLN03130 ABC transporter C family member; Provisional
Probab=99.47 E-value=1.5e-15 Score=155.67 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.|+|++|+||||++++|.+...+. .|.||+.|. ..-....+|+.+..++|++.+ +..|.
T Consensus 1254 VL~~is~~I~~Gek--VaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI-~~i~l~~LR~~IsiVpQdp~L-F~GTI 1329 (1622)
T PLN03130 1254 VLHGLSFEISPSEK--VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDI-SKFGLMDLRKVLGIIPQAPVL-FSGTV 1329 (1622)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEec-ccCCHHHHHhccEEECCCCcc-ccccH
Confidence 56677777789999 9999999999999999999988766 899999884 333456788999999999855 45677
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+.+ +...+++++.+.++.. .......++....+.-.++|+|+.|+ |+...++++++|
T Consensus 1330 reNLd~----------~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1330 RFNLDP----------FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred HHHhCc----------CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 788865 3345777766665542 11111111222222234588888777 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
|+|+++|..+...+.+.+++..+. |+++|....+.. +|+++.+
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVL 1445 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVL 1445 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEE
Confidence 999999988887777777766443 779999988876 6877644
No 410
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.47 E-value=1.5e-15 Score=142.61 Aligned_cols=179 Identities=18% Similarity=0.156 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+++|+. +.++||+||||||+++.+.+...+. .|.+|+.| +..-....+++.+..++|++.++- .|
T Consensus 343 ~vl~~is~~i~~Ge~--vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d-I~~i~~~~lr~~I~~V~Qd~~LF~-~T 418 (567)
T COG1132 343 PVLKDISFSIEPGEK--VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID-IRDISLDSLRKRIGIVSQDPLLFS-GT 418 (567)
T ss_pred ccccCceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe-hhhcCHHHHHHhccEEcccceeec-cc
Confidence 456677777889999 9999999999999999999998875 66669877 333346788999999998876554 67
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-HHh--CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-KKE--GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-~~~--~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
..+|+..+- +..+++++.+.++... ... ++ .++...-+.=..+|||+.|| |+...+.++++
T Consensus 419 I~~NI~~g~---------~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILIL 489 (567)
T COG1132 419 IRENIALGR---------PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL 489 (567)
T ss_pred HHHHHhcCC---------CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 778876531 2256777777766541 111 11 01111112223588888887 77777889999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||||+.+|..+...+.+.+.++.+. ++++|....+.. +|+++.+
T Consensus 490 DEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl 536 (567)
T COG1132 490 DEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVL 536 (567)
T ss_pred eccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEE
Confidence 9999999999988888888766543 568899888877 7877654
No 411
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.46 E-value=2.8e-15 Score=142.14 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=128.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHH-HHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQAL-RRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l-~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+++|+. +.|.||||+|||||++++++...++ .+.+|+.+.. .......+ ++.+.+.+++..++..
T Consensus 23 il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 23 VLKGISLDIYAGEM--VAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 45556666688998 9999999999999999999998765 7788876532 22211122 3456777777655444
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
.+..+++..... +...+..+..+.+...++..++ ++.....+.++|+|+.|+ |+...|+++++|||
T Consensus 101 ~tv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~lgl--~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP 171 (648)
T PRK10535 101 LTAAQNVEVPAV-------YAGLERKQRLLRAQELLQRLGL--EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171 (648)
T ss_pred CCHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 444455433221 2233445566677778888777 555566678899999888 67777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|......+.+.+.++.+. ++++|+.+... .+|+++.+
T Consensus 172 ~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l 216 (648)
T PRK10535 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEI 216 (648)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEE
Confidence 9999999999999999888654 77999988765 57877644
No 412
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.46 E-value=6.2e-16 Score=148.76 Aligned_cols=178 Identities=13% Similarity=0.059 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.++||+|||||||+++|++...+. .|.+|+.|. ..-....+++.+.+++|++.++ ..|.
T Consensus 494 vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~lf-~gTi 569 (710)
T TIGR03796 494 LIENFSLTLQPGQR--VALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR-EEIPREVLANSVAMVDQDIFLF-EGTV 569 (710)
T ss_pred cccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH-HHCCHHHHHhheeEEecCChhh-hccH
Confidence 56666666788998 9999999999999999999998766 899999773 2223567889999999987544 4566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-----KKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+... -+..+++++.+.++... ......++....+.=..+|||+.|| |+...++++++|
T Consensus 570 ~eNi~l~---------~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD 640 (710)
T TIGR03796 570 RDNLTLW---------DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640 (710)
T ss_pred HHHhhCC---------CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 6776431 12345666555444321 1110011111112223589998888 777788999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|..+...+.+.+.+.-.. |+++|....+.. +|+++.+
T Consensus 641 EptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl 684 (710)
T TIGR03796 641 EATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVL 684 (710)
T ss_pred CccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEE
Confidence 999999998887777776652111 778999877765 7877655
No 413
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.46 E-value=4.1e-14 Score=108.53 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=118.8
Q ss_pred HHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281 27 RNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP 105 (287)
Q Consensus 27 ~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~ 105 (287)
+..+..|+. +-++|||||||||++-.+++...+. .|.+++.+.-. -....|.+.=.+..++..-.+.+.+..
T Consensus 19 S~qv~aGe~--~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~-~~~~eLArhRAYLsQqq~p~f~mpV~~---- 91 (248)
T COG4138 19 SGEVRAGEI--LHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEA-WSATELARHRAYLSQQQTPPFAMPVWH---- 91 (248)
T ss_pred ccccccceE--EEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhH-HhHhHHHHHHHHHhhccCCcchhhhhh----
Confidence 334456777 8899999999999999999988766 78889877422 222333333333333321111111211
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH------------HHHHHHHHhhcCCCcc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR------------AILMCEASKVQQYPFQ 173 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~------------al~~l~~~~~~dep~~ 173 (287)
++....|. ++....+..++...++ ++..-+.+.++|||+-+| -+|-..++++.|||.+
T Consensus 92 -------YL~L~qP~-~~~a~~i~~i~~~L~l--~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 92 -------YLTLHQPD-KTRTELLNDVAGALAL--DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred -------hhhhcCch-HHHHHHHHHHHhhhcc--cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 11233333 6777888889988887 888899999999999998 3444557888999999
Q ss_pred cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|..........+.++..+ |++.||.+.-.+-.+++.-+
T Consensus 162 ~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL 205 (248)
T COG4138 162 SLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLL 205 (248)
T ss_pred chhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHH
Confidence 99977666666777777766 78999999888888887633
No 414
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.46 E-value=3e-15 Score=140.90 Aligned_cols=176 Identities=21% Similarity=0.183 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +++.||+|+|||||++++++...+. .|.+|+.+ ++.-....+++.+.+++|++. ++..|.
T Consensus 355 iL~~inl~i~~Ge~--i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~-i~~~~~~~~~~~i~~~~Q~~~-lf~~Ti 430 (576)
T TIGR02204 355 ALDGLNLTVRPGET--VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD-LRQLDPAELRARMALVPQDPV-LFAASV 430 (576)
T ss_pred cccceeEEecCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE-HHhcCHHHHHHhceEEccCCc-cccccH
Confidence 45666666689999 9999999999999999999998765 78899876 333334567788999998775 445566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
.+|+..+ .+..+++++.+.++.. ++.. |+ +....+.-..+|+|+.|| |+...+.+++
T Consensus 431 ~~Ni~~~---------~~~~~~~~~~~~l~~~~l~~~i~~l~~gl--~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 431 MENIRYG---------RPDATDEEVEAAARAAHAHEFISALPEGY--DTYLGERGVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred HHHHhcC---------CCCCCHHHHHHHHHHcCcHHHHHhCCCCC--CceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 6666432 1223444544443321 1111 21 111112233589998887 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|..+...+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l 547 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVM 547 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEE
Confidence 99999999998887777777776433 77899986654 46776644
No 415
>KOG0055|consensus
Probab=99.46 E-value=1.8e-14 Score=139.42 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+++|+. +.|+|||||||||++..|.+...|. .|+||+.|. ..-....|+..++-++|.+ +++.++.
T Consensus 368 Il~g~sl~i~~G~~--valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di-~~~~~~~lr~~iglV~QeP-vlF~~tI 443 (1228)
T KOG0055|consen 368 ILKGVSLKIPSGQT--VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI-RNLNLKWLRSQIGLVSQEP-VLFATTI 443 (1228)
T ss_pred hhCCeEEEeCCCCE--EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc-hhcchHHHHhhcCeeeech-hhhcccH
Confidence 44556666688999 9999999999999999999999887 899999884 3334677889999999988 5566677
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh---CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE---GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+..+ -+..+.+++.+..+..-... .+ .++....+.=.++|||+.|| |+...|+++++|
T Consensus 444 ~eNI~~G---------~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 444 RENIRYG---------KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD 514 (1228)
T ss_pred HHHHhcC---------CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence 7776432 11223555554443211100 00 00111111122378888777 888889999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
|+|+++|......+.+.+.+..+. ++++|....+.. .|.++
T Consensus 515 EaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~ 558 (1228)
T KOG0055|consen 515 EATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIA 558 (1228)
T ss_pred CcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEE
Confidence 999999999988888888777654 888999888887 56655
No 416
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.46 E-value=5.5e-12 Score=107.46 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------------------
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------------------- 62 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------- 62 (287)
..+...+...++.+. +.++++||+|+||||+++.+++.+.+.
T Consensus 29 ~~~~~~l~~~~~~~~-~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~ 107 (269)
T TIGR03015 29 KRAMAYLEYGLSQRE-GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAAL 107 (269)
T ss_pred HHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 344555555555443 128999999999999999998876421
Q ss_pred ------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCc---EEEEEeCCC------CCCcHHHhccc-cee
Q psy2281 63 ------------------VIILNETDHLTREAQQALRRTMEKYITTC---RLILCANSM------SQVIPAIRSRC-LCI 114 (287)
Q Consensus 63 ------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~---~~i~~~~~~------~~l~~~l~sr~-~~~ 114 (287)
++++||++.++......++...+....+. .++++.... ..-..++.+|+ ..+
T Consensus 108 ~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~ 187 (269)
T TIGR03015 108 LRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASC 187 (269)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeee
Confidence 88999999998777666654433322121 233333211 11133567775 467
Q ss_pred ecCCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281 115 RIPAPTHEEIVSVLTNICKKEG----LTIPPEFALRLAQQSDRNLRRAILMCEAS 165 (287)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~s~G~~r~al~~l~~~ 165 (287)
.+++++.+++.+.+...+...| ..+++++.+.+.+.|+|..|........+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 8999999999999998888665 35789999999999999988844444443
No 417
>PRK13409 putative ATPase RIL; Provisional
Probab=99.45 E-value=4.4e-15 Score=138.82 Aligned_cols=158 Identities=14% Similarity=0.022 Sum_probs=111.9
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
++..+.+|++ +.|.||||+|||||+++|++.+.+. .|.++ . .+.+.+|+..+....++.+++
T Consensus 358 ~s~~i~~Gei--v~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~-------------~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 358 EGGEIYEGEV--IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L-------------KISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred cceEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e-------------eEEEecccccCCCCCcHHHHH
Confidence 3344577888 9999999999999999999987654 44443 1 244555543322222222222
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI 178 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~ 178 (287)
.... ...... ....++++..++ .+...+.+.++|+|+.|| |+...+.++++|||++++|..
T Consensus 422 ~~~~---------~~~~~~---~~~~~~L~~l~l--~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 422 RSIT---------DDLGSS---YYKSEIIKPLQL--ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred HHHh---------hhcChH---HHHHHHHHHCCC--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 2110 011111 234567777777 566777889999999999 666678899999999999999
Q ss_pred cCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 179 VEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 179 ~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
....+.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999998763 78999999999999987644
No 418
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.45 E-value=2.9e-12 Score=114.41 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=102.5
Q ss_pred CCCCCccCcHHHHHHHHHHHh-----------cC-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLK-----------EG-DFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~-----------~g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
..++++.|.+..++.+...+. -| ..|. ++|+||||||||++++++++.....
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g 207 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG 207 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence 356778888887777776651 12 2232 9999999999999999999876533
Q ss_pred -------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc-----cCCcEEEEEeCCCCCCcHHH
Q psy2281 63 -------------------VIILNETDHLT-----------REAQQALRRTMEKY-----ITTCRLILCANSMSQVIPAI 107 (287)
Q Consensus 63 -------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~-----~~~~~~i~~~~~~~~l~~~l 107 (287)
+|+|||+|.+. ...+..+...+... ..+..++.++|..+.+.+++
T Consensus 208 ~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~al 287 (389)
T PRK03992 208 EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAI 287 (389)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHH
Confidence 89999999863 22333444444322 12455777777778888888
Q ss_pred hc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHHHHHHHH
Q psy2281 108 RS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ----QSDRNLRRAILMCE 163 (287)
Q Consensus 108 ~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~s~G~~r~al~~l~ 163 (287)
.+ |+ ..+.|+.|+.++..++++..+....+. .+.....++. ++++|++..+...-
T Consensus 288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred cCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 75 66 468999999999999999887765553 1123445555 45556665444433
No 419
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.45 E-value=3.7e-15 Score=140.43 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++++||+|+|||||++.+++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..|.
T Consensus 350 iL~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i-~~~~~~~~r~~i~~v~Q~~~lf-~~Ti 425 (588)
T PRK13657 350 GVEDVSFEAKPGQT--VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI-RTVTRASLRRNIAVVFQDAGLF-NRSI 425 (588)
T ss_pred eecceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh-hhCCHHHHHhheEEEecCcccc-cccH
Confidence 45666666688998 9999999999999999999998766 888998663 2223556788899999887544 4556
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+..+ -+..+++++...++.. +.+..-.++....+.-..+|||+.|| |+...+.++++|
T Consensus 426 ~~Ni~~~---------~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD 496 (588)
T PRK13657 426 EDNIRVG---------RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496 (588)
T ss_pred HHHHhcC---------CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6665321 1234566655554432 11110001111112223489998888 777778899999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|+.+...+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 497 Epts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l 542 (588)
T PRK13657 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVF 542 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEE
Confidence 999999999888888888776433 77999987654 47777655
No 420
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.45 E-value=6.1e-15 Score=121.17 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=102.0
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEE-EeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VII-LNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~-ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
++..+++|++ +.|.||||+|||||++++++...+. .|. +++... . ++ +...++...+..++
T Consensus 6 vs~~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~----------~~---~~~~l~~~ltv~en 69 (213)
T PRK15177 6 TDFVMGYHEH--IGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-P----------LG---ANSFILPGLTGEEN 69 (213)
T ss_pred eeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-c----------cc---cccccCCcCcHHHH
Confidence 3444577888 9999999999999999999987644 332 444221 0 11 11222222233344
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..... +...+.++....+ .+..++ ++.....+..+|+|+.+| |+...|.++++|||++.+|.
T Consensus 70 l~~~~~-------~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 70 ARMMAS-------LYGLDGDEFSHFC---YQLTQL--EQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHH-------HcCCCHHHHHHHH---HHHhCh--hHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 433221 1123333333222 223344 455566778899998888 56666788999999999998
Q ss_pred ccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281 178 IVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
.....+.+.+.+..+. ++++|+...+..++|+++.+..
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~ 178 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLH 178 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEEC
Confidence 8777666655433322 7799999999999998875533
No 421
>KOG0738|consensus
Probab=99.45 E-value=5e-12 Score=108.24 Aligned_cols=145 Identities=22% Similarity=0.281 Sum_probs=101.9
Q ss_pred CCCCccCcHHHHHHHHHHH----------hcCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281 12 NLQKLDFHCKQANHLRNLL----------KEGDFPH--LLFYGPSGAGKKTRIMALLKELYGP----------------- 62 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~----------~~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~----------------- 62 (287)
.++++.|..++++.|+..+ +....|= ++++||||+|||.|+++++.+...+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS 289 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES 289 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccch
Confidence 5788999999988888776 2223332 9999999999999999999887543
Q ss_pred -----------------EEEEeCCCCCCH------------HHHHHHHHHHHhcc---CC--cEEEEEeCCCC-CCcHHH
Q psy2281 63 -----------------VIILNETDHLTR------------EAQQALRRTMEKYI---TT--CRLILCANSMS-QVIPAI 107 (287)
Q Consensus 63 -----------------~i~ide~d~l~~------------~~~~~l~~~i~~~~---~~--~~~i~~~~~~~-~l~~~l 107 (287)
+|||||+|.+.. .....|+-.|+-+. ++ .++++.+|+.+ .|.+++
T Consensus 290 EKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAl 369 (491)
T KOG0738|consen 290 EKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEAL 369 (491)
T ss_pred HHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHH
Confidence 999999998631 12345666665442 12 35677766654 799999
Q ss_pred hccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHH
Q psy2281 108 RSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRR 157 (287)
Q Consensus 108 ~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~ 157 (287)
+.|+ ..+.++.|+.+.....++..+....+. ++-.+..++ .+||.|++.
T Consensus 370 rRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~n 423 (491)
T KOG0738|consen 370 RRRLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITN 423 (491)
T ss_pred HHHHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHH
Confidence 9999 457788888888888887776654432 222234444 466777777
No 422
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.45 E-value=1.5e-15 Score=145.59 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++++||+|+||||+++++++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..+.
T Consensus 472 il~~i~l~i~~G~~--vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i-~~~~~~~~r~~i~~v~q~~~lf-~~ti 547 (694)
T TIGR01846 472 VLSNLNLDIKPGEF--IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL-AIADPAWLRRQMGVVLQENVLF-SRSI 547 (694)
T ss_pred ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh-hhCCHHHHHHhCeEEccCCeeh-hhhH
Confidence 45566666688988 9999999999999999999998765 889998763 2223456788899999887544 3455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+... -+..+.+++.+.++.. +......++....+.-..+|+|+.|| |+...+.++++|
T Consensus 548 ~eNi~~~---------~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD 618 (694)
T TIGR01846 548 RDNIALC---------NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD 618 (694)
T ss_pred HHHHhcC---------CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5665321 1234555555544432 11111011222222234688998888 777788999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|..+...+.+.+.++... ++.+|+...+.. +|+++.+
T Consensus 619 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l 664 (694)
T TIGR01846 619 EATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVL 664 (694)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEE
Confidence 999999999988888888877433 779999987765 7877655
No 423
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.44 E-value=2e-15 Score=144.84 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.++||+|+|||||++.+++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..|.
T Consensus 480 vL~~i~l~i~~G~~--iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l-~~~~~~~lr~~i~~v~Q~~~lf-~~TI 555 (694)
T TIGR03375 480 ALDNVSLTIRPGEK--VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI-RQIDPADLRRNIGYVPQDPRLF-YGTL 555 (694)
T ss_pred ceeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh-hhCCHHHHHhccEEECCChhhh-hhhH
Confidence 45666666788998 9999999999999999999988766 899998763 3323566888999999888544 4566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-----KKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+... -+..+++++.+.++... +.....++...-+.-..+|||+.|| |+...+.++++|
T Consensus 556 ~eNi~~~---------~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 556 RDNIALG---------APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred HHHHhCC---------CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6666431 11246666655554421 1110001111112223588898877 677778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
|||+++|..+...+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl 672 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVM 672 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 999999999988888888877543 77899987664 56777654
No 424
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.44 E-value=4.8e-15 Score=139.42 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=121.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +++.||+|+|||||++++++...+. .|.+|+.+. +.-....+++.+.+++|++. ++..+.
T Consensus 347 il~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i-~~~~~~~~~~~i~~v~Q~~~-lf~~Ti 422 (571)
T TIGR02203 347 ALDSISLVIEPGET--VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL-ADYTLASLRRQVALVSQDVV-LFNDTI 422 (571)
T ss_pred cccCeeEEecCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH-HhcCHHHHHhhceEEccCcc-cccccH
Confidence 45566666688998 9999999999999999999998765 889998763 33334567888999998875 445566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+... .-+..+++++.+.++. .|+. ++...-+.=..+|||+.|| |+...+.+
T Consensus 423 ~~Ni~~~--------~~~~~~~~~i~~~l~~----~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i 490 (571)
T TIGR02203 423 ANNIAYG--------RTEQADRAEIERALAA----AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI 490 (571)
T ss_pred HHHHhcC--------CCCCCCHHHHHHHHHH----cChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 6666431 0013556655555443 3330 0111111113489998888 66677889
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|..+...+.+.+.+..+. ++++|+...+ ..+|+++.+
T Consensus 491 llLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l 540 (571)
T TIGR02203 491 LILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVM 540 (571)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEE
Confidence 9999999999999988888888877543 6789988554 457776644
No 425
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.44 E-value=4.4e-15 Score=121.62 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +.+.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus 23 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~-~tv 98 (207)
T cd03369 23 VLKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI-STIPLEDLRSSLTIIPQDPTLFS-GTI 98 (207)
T ss_pred cccCceEEECCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEh-HHCCHHHHHhhEEEEecCCcccC-ccH
Confidence 45566666688988 9999999999999999999987654 677887542 11112234556777777764432 234
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++.. +...+.+++.+.+. + ......+|+|+.|| |+...++++++|||+++
T Consensus 99 ~~~l~~----------~~~~~~~~~~~~l~-------~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 99 RSNLDP----------FDEYSDEEIYGALR-------V------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HHHhcc----------cCCCCHHHHHHHhh-------c------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 344321 11223333333222 1 12345678887777 77778899999999999
Q ss_pred ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
+|......+.+.+.++.+. ++++|+.+.+.. +++++.
T Consensus 156 LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~ 195 (207)
T cd03369 156 IDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILV 195 (207)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEE
Confidence 9998888888888776432 778999888765 676553
No 426
>PRK05907 hypothetical protein; Provisional
Probab=99.44 E-value=2e-10 Score=99.05 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=168.6
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh-CCC----------------------------EEEEeCCCCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL-YGP----------------------------VIILNETDHLT 73 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~-~~~----------------------------~i~ide~d~l~ 73 (287)
...+...+++|+ |.|+++|..- ....+.+...+ .++ +|++.+.+.++
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~~~fdg~~~~~~~ii~~aetlPfFaerRlV~v~~~~~~~ 82 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRKSEFDGQGLLQQELLSWTEHFGLFASQETIGIYQAEKMS 82 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCccceecCCCCCHHHHHHHHhcCCcccCeEEEEEecccccc
Confidence 345555677888 7899999876 44444444433 221 66666665555
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHhccccee----ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy2281 74 REAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIRSRCLCI----RIPAPTHEEIVSVLTNICKKEGLTIPPEFALR 146 (287)
Q Consensus 74 ~~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~sr~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 146 (287)
....+.|..+++.+++++.+++.+...+. +...+. ....+ .|.++.+.++..|+...+++.|+.+++++.+.
T Consensus 83 ~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~ 161 (311)
T PRK05907 83 SSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLS-SALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASL 161 (311)
T ss_pred cccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHh-hcceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 54567899999999887666633322221 222233 24444 78889999999999999999999999999999
Q ss_pred HHHHc-CCcHHHHHHHHHHHhhcC---CCccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhc-CCC
Q psy2281 147 LAQQS-DRNLRRAILMCEASKVQQ---YPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVH-SIP 219 (287)
Q Consensus 147 l~~~s-~G~~r~al~~l~~~~~~d---ep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~ 219 (287)
+.+++ +||+..+.+.+++++++. +.++..| ..........++++.+.+... +..+..+.+.+|+.. |.+
T Consensus 162 L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~----~~~~Al~il~~Ll~~~ge~ 237 (311)
T PRK05907 162 FVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRR----DRVEGHSLLRSLLSDMGED 237 (311)
T ss_pred HHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCC
Confidence 99999 599999999999998873 2344333 334455666788888887665 444455556677788 888
Q ss_pred HHHHHHHHHHH---HHHh---------------CChHHHHHHHHHHHHHhhHHhcCCCh-HHHHHHHHHHHHH
Q psy2281 220 VNVLFKYLLEG---LLAN---------------CDSDLKSKSIEMAAMFEHRIHKGSKP-IFHIEAYVASFMA 273 (287)
Q Consensus 220 ~~~i~~~~~~~---~~~~---------------~~~~~~~~~~~~~~~~~~~l~~g~~~-~~~l~~~i~~~~~ 273 (287)
|-.|+.-+... -.+. ++...+.+++..+.+.|+.+++|..+ .+.+|.|+.+++.
T Consensus 238 p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lElli~~~~~ 310 (311)
T PRK05907 238 PLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVETLVIRMTN 310 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 86665422222 1221 34567889999999999999997654 6689999988763
No 427
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.44 E-value=9.5e-11 Score=102.70 Aligned_cols=211 Identities=16% Similarity=0.171 Sum_probs=140.2
Q ss_pred EEEEeCCCCC---CHHHHHHHHHHHHhccCCcEEEEEeCCC-C---CCcHHHhcccceeecCCC---CHHHHHHHHHHHH
Q psy2281 63 VIILNETDHL---TREAQQALRRTMEKYITTCRLILCANSM-S---QVIPAIRSRCLCIRIPAP---THEEIVSVLTNIC 132 (287)
Q Consensus 63 ~i~ide~d~l---~~~~~~~l~~~i~~~~~~~~~i~~~~~~-~---~l~~~l~sr~~~~~~~~~---~~~~~~~~l~~~~ 132 (287)
+|++++++.+ +.+..+.|..+++.+++++.++++++.. + +....++..+.+..|..+ +.+++..++...+
T Consensus 64 lVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~ 143 (326)
T PRK07452 64 LVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTA 143 (326)
T ss_pred EEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHH
Confidence 8888987654 4456678889999988888888764332 1 244456666666666544 4577999999999
Q ss_pred HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc----CCCcccccC--ccCccHHHHHHHHHHHHHhccChhHHHHH
Q psy2281 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ----QYPFQIDQQ--IVEPDWKIYIRDTAKLIISEQSPKKLLEV 206 (287)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~----dep~~~~d~--~~~~~~~~~i~~l~~~i~~~~~~~~~~~~ 206 (287)
++.|+.+++++.+.+++..++|++.+.+.+++++++ +++++..|. ..... ...++++.+.++... ...+..+
T Consensus 144 ~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~-~~~A~~~ 221 (326)
T PRK07452 144 QELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGN-TGKALAL 221 (326)
T ss_pred HHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCC-HHHHHHH
Confidence 999999999999999999999999999999999987 224554431 11111 123445555544331 1111111
Q ss_pred HHHH------------------H------HHHhcCCC-HHHHHHH--H-HH-------HHHHhCChHHHHHHHHHHHHHh
Q psy2281 207 RTRL------------------Y------ELLVHSIP-VNVLFKY--L-LE-------GLLANCDSDLKSKSIEMAAMFE 251 (287)
Q Consensus 207 ~~~~------------------~------~l~~~~~~-~~~i~~~--~-~~-------~~~~~~~~~~~~~~~~~~~~~~ 251 (287)
.+.+ . .+...|.+ ++.+.+. + ++ ...++++.+.+..++..+.+.+
T Consensus 222 l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D 301 (326)
T PRK07452 222 LDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLE 301 (326)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1111 1 11224543 3323321 1 11 1223677888889999999999
Q ss_pred hHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 252 HRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 252 ~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
..++.|..+...||.++.+++..+
T Consensus 302 ~~iK~g~~~~~~le~~i~~~~~~~ 325 (326)
T PRK07452 302 ASLKQGANPINALQDKLIELCQLL 325 (326)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhh
Confidence 999999999889999999988754
No 428
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=4.1e-12 Score=103.13 Aligned_cols=102 Identities=12% Similarity=0.173 Sum_probs=84.3
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy2281 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142 (287)
Q Consensus 63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 142 (287)
+++|+++|.++..+.++|++.+|+|++++.|++.++..+.++++++|||+.+.|..+......++....+.-.+ ++.
T Consensus 92 ViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p~~---~~~ 168 (263)
T PRK06581 92 VAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQPIA---DNK 168 (263)
T ss_pred EEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhccccc---ccH
Confidence 99999999999999999999999999999999999999999999999999999999988777776665443322 455
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh
Q psy2281 143 FALRLAQQSDRNLRRAILMCEASKV 167 (287)
Q Consensus 143 ~~~~l~~~s~G~~r~al~~l~~~~~ 167 (287)
.++.+.+.+.-|....+...+.+.+
T Consensus 169 ~l~~i~~~~~~d~~~w~~~~~~~~~ 193 (263)
T PRK06581 169 TLDFINRFTTKDRELWLDFIDNLLL 193 (263)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6788887777777776666555544
No 429
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.44 E-value=2.2e-12 Score=117.29 Aligned_cols=130 Identities=21% Similarity=0.292 Sum_probs=94.6
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHh-----------cCCC-C-cEEEeCCCCCcHHHHHHHHHHHhCC----------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDF-P-HLLFYGPSGAGKKTRIMALLKELYG---------- 61 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~-~-~~~l~Gp~G~GKTtl~~~l~~~~~~---------- 61 (287)
.+++.+.+++++.|....++.++..+. .|-. | +++|+||||||||++++++++.+..
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 356677889999998888877777652 1222 2 2999999999999999999987521
Q ss_pred --------------------------------------CEEEEeCCCCCCHH------------HHHHHHHHHHhccC--
Q psy2281 62 --------------------------------------PVIILNETDHLTRE------------AQQALRRTMEKYIT-- 89 (287)
Q Consensus 62 --------------------------------------~~i~ide~d~l~~~------------~~~~l~~~i~~~~~-- 89 (287)
.+|+|||+|.+... ....|+..++....
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence 08999999976321 12345555554432
Q ss_pred CcEEEEEeCCCCCCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKK 134 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~ 134 (287)
+..+|.++|..+.+.+++++ |+. .+.|+.|+.++..+++...+..
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 34456666777889999987 774 5899999999999999888754
No 430
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.3e-14 Score=127.24 Aligned_cols=174 Identities=22% Similarity=0.247 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+++|+. +.|.|++||||||+++.+++...++ -|.+.+.+.-.- ..+.+++.+...+|...++- .|
T Consensus 352 ~~L~~~~l~l~~GEk--vAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l-~~~~~~e~i~vl~Qr~hlF~-~T 427 (573)
T COG4987 352 KALKNFNLTLAQGEK--VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL-DEQALRETISVLTQRVHLFS-GT 427 (573)
T ss_pred chhhccceeecCCCe--EEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC-ChhhHHHHHhhhccchHHHH-HH
Confidence 467888888899999 9999999999999999999988766 677777653221 12346778887777765443 34
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHHH----HHcCCcHHH-----HHHHHHH
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPEFALRLA----QQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~----~~s~G~~r~-----al~~l~~ 164 (287)
..+|+..+ -+.-+++++.+.++.+ |+ +.++.....+. .+|||+.|| ++.....
T Consensus 428 lr~NL~lA---------~~~AsDEel~~aL~qv----gL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 428 LRDNLRLA---------NPDASDEELWAALQQV----GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred HHHHHhhc---------CCCCCHHHHHHHHHHc----CHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 55555332 2334667777666553 33 11122222333 489999999 3444456
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
+.++||||.++|+.+..++...+++-.+. +++||....++. +|+++.
T Consensus 495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIiv 544 (573)
T COG4987 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIV 544 (573)
T ss_pred eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEE
Confidence 77889999999999999999888887664 789999877775 466553
No 431
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.43 E-value=5.4e-15 Score=138.70 Aligned_cols=174 Identities=19% Similarity=0.191 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +++.||||+||||+++++++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..+.
T Consensus 330 ~l~~i~~~i~~G~~--~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~lf-~~ti 405 (569)
T PRK10789 330 ALENVNFTLKPGQM--LGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL-TKLQLDSWRSRLAVVSQTPFLF-SDTV 405 (569)
T ss_pred cccCeeEEECCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEH-hhCCHHHHHhheEEEccCCeec-cccH
Confidence 55666666788988 9999999999999999999988765 788887652 2222456778888888887554 3456
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+..+ .+..+++++...++ ..++. ++....+.-..+|+|+.|| |+...+.+
T Consensus 406 ~~Ni~~~---------~~~~~~~~~~~~~~----~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i 472 (569)
T PRK10789 406 ANNIALG---------RPDATQQEIEHVAR----LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI 472 (569)
T ss_pred HHHHhcC---------CCCCCHHHHHHHHH----HcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 5665321 12235555544333 22320 0111112234589998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|......+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 473 lllDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~-~d~i~~l 522 (569)
T PRK10789 473 LILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE-ASEILVM 522 (569)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc-CCEEEEE
Confidence 9999999999999888888888776433 778999876654 6776544
No 432
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.43 E-value=3.5e-12 Score=116.05 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=103.5
Q ss_pred CCCCCccCcHHHHHHHHHHH--------hcC-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLL--------KEG-DFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~--------~~g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
.+|+++.|...+++.+.... ..| ..|. ++|+||||||||++++++++....+
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese 304 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESE 304 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHH
Confidence 46888999877776665432 123 2233 9999999999999999999987533
Q ss_pred ----------------EEEEeCCCCCCHH------------HHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhc--cc-
Q psy2281 63 ----------------VIILNETDHLTRE------------AQQALRRTMEKYITTCRLILCANSMSQVIPAIRS--RC- 111 (287)
Q Consensus 63 ----------------~i~ide~d~l~~~------------~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~s--r~- 111 (287)
+++|||+|.+... ....+...+........++.++|..+.+++++.+ |+
T Consensus 305 ~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD 384 (489)
T CHL00195 305 SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFD 384 (489)
T ss_pred HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCC
Confidence 8999999865321 1223444455433333455566677889999875 77
Q ss_pred ceeecCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHH----HcCCcHHHHHHHHHH
Q psy2281 112 LCIRIPAPTHEEIVSVLTNICKKEGLT-IPPEFALRLAQ----QSDRNLRRAILMCEA 164 (287)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~----~s~G~~r~al~~l~~ 164 (287)
..+.++.|+.++..++++..+.+.+.. .++.....+++ +||+|+++++...-.
T Consensus 385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 368899999999999999988876532 22334555555 456677776554433
No 433
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.43 E-value=7.2e-15 Score=137.24 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+++|+. ++++|||||||||+++++++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..+
T Consensus 332 ~~l~~~~~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~lf-~~t 407 (544)
T TIGR01842 332 PTLRGISFRLQAGEA--LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL-KQWDRETFGKHIGYLPQDVELF-PGT 407 (544)
T ss_pred cccccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh-hhCCHHHHhhheEEecCCcccc-ccc
Confidence 345666666688988 9999999999999999999998765 788888653 2222345678888888887554 334
Q ss_pred CCCCCcHHHhcccceeecC-CCCHHHHHHHHHH-----HHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 99 SMSQVIPAIRSRCLCIRIP-APTHEEIVSVLTN-----ICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
..+|+.. +. ..+++++.+.++. .++...-.++....+.-..+|+|+.|| |+...+++++
T Consensus 408 i~~Ni~~----------~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 408 VAENIAR----------FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred HHHHHhc----------cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5555431 22 2455555444332 222221111222223345689998888 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHH--H--HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAK--L--IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~--~--i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|..+...+.+.+.++.. . ++.+|+...+ ..+|+++.+
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l 526 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVL 526 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence 9999999999988888888888752 2 6789998754 456776644
No 434
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.43 E-value=3.4e-15 Score=143.59 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|+||+|+|||||++.+++...+. .|.+|+.+. ..-..+.+++.+.+++|++.+ +..|.
T Consensus 489 iL~~isl~i~~G~~--vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~l-f~gTI 564 (708)
T TIGR01193 489 ILSDISLTIKMNSK--TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-KDIDRHTLRQFINYLPQEPYI-FSGSI 564 (708)
T ss_pred ceeceeEEECCCCE--EEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH-HHcCHHHHHHheEEEecCcee-hhHHH
Confidence 45566666688988 9999999999999999999988766 899998763 222356788899999998754 44566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+|+..+. -+..+++++.+.++.. +......++...-+.-..+|||+.|| |+...+.++++|
T Consensus 565 ~eNi~l~~--------~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD 636 (708)
T TIGR01193 565 LENLLLGA--------KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD 636 (708)
T ss_pred HHHHhccC--------CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 66664320 0234555555444332 11110011111112223478888877 777778999999
Q ss_pred CCcccccCccCccHHHHHHHHHHH--HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL--IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~--i~~~~~~~~~~~~~~~~~~l 213 (287)
|||+++|..+...+.+.+.++... |+++|....+. .+|+++.+
T Consensus 637 E~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l 681 (708)
T TIGR01193 637 ESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVL 681 (708)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEE
Confidence 999999998888777777765222 77899987664 46777654
No 435
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.43 E-value=5.1e-15 Score=138.95 Aligned_cols=174 Identities=20% Similarity=0.228 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +++.||||+||||+++++++...+. .|.+|+.+ +..-....+++.+.+++|++.+ +..+.
T Consensus 355 il~~i~~~i~~G~~--~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~-i~~~~~~~~r~~i~~v~Q~~~l-f~~ti 430 (574)
T PRK11160 355 VLKGLSLQIKAGEK--VALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP-IADYSEAALRQAISVVSQRVHL-FSATL 430 (574)
T ss_pred ceecceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-hhhCCHHHHHhheeEEcccchh-hcccH
Confidence 56666777789999 9999999999999999999988765 88899876 3322345678889999988754 34455
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--------IPPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
.+|+..+ .+..+++++.+.++ ..++. ++...-+.-..+|+|+.|| |+...+.++
T Consensus 431 ~~Ni~~~---------~~~~~~~~i~~al~----~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 431 RDNLLLA---------APNASDEALIEVLQ----QVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred HHHhhcC---------CCccCHHHHHHHHH----HcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 5665321 12245555544443 33331 0111122334589998888 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|..+...+.+.+.++.+. ++++|....+.. +|+++.+
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l 546 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVM 546 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEE
Confidence 999999999999888888888777543 678999877754 6776644
No 436
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=9.7e-16 Score=142.58 Aligned_cols=178 Identities=13% Similarity=0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|++ ++|.||||||||||+++|++.+.+. .|.+++.. .+.+++++..++...+
T Consensus 15 ~il~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 15 PLFENISVKFGGGNR--YGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE------------RLGKLRQDQFAFEEFT 80 (530)
T ss_pred EeEeCCEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------------EEEEEeccCCcCCCCc
Confidence 345566666788999 9999999999999999999987654 55555411 1222222221111111
Q ss_pred CCCCCcHHHh---cc---c-ceee------------------cCCCCHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHcC
Q psy2281 99 SMSQVIPAIR---SR---C-LCIR------------------IPAPTHEEIVSVLTNICKKEGLTIPPEFA-LRLAQQSD 152 (287)
Q Consensus 99 ~~~~l~~~l~---sr---~-~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~s~ 152 (287)
..+++..+.. .. . .... +......+....+..+++..|+ ++... +.+.++|+
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~LSg 158 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI--PEEQHYGLMSEVAP 158 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--ChhHhcCchhhcCH
Confidence 1122111100 00 0 0000 0000111233456677888887 44333 46789999
Q ss_pred CcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281 153 RNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 153 G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~ 214 (287)
|+.+| ++...|.++++|||++++|......+.+.+.+.-.. |+++|+...+..++++++.+-
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 99888 666668999999999999998887777666532111 789999999999999887553
No 437
>CHL00176 ftsH cell division protein; Validated
Probab=99.42 E-value=1.1e-11 Score=116.31 Aligned_cols=151 Identities=20% Similarity=0.314 Sum_probs=104.7
Q ss_pred CCCCCccCcHHHHHHHHHHH---hc--------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLL---KE--------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~---~~--------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
.+|+++.|..+.++.+...+ +. ...|. ++|+||||||||++++++++....+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~ 259 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGV 259 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhh
Confidence 47889999888777776665 11 12233 9999999999999999999876432
Q ss_pred ------------------EEEEeCCCCCCH-----------HHHHHH---HHHHHhccC--CcEEEEEeCCCCCCcHHHh
Q psy2281 63 ------------------VIILNETDHLTR-----------EAQQAL---RRTMEKYIT--TCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 63 ------------------~i~ide~d~l~~-----------~~~~~l---~~~i~~~~~--~~~~i~~~~~~~~l~~~l~ 108 (287)
+++|||+|.+.. ..+..+ +..++.... +..++.++|.++.+.++++
T Consensus 260 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALl 339 (638)
T CHL00176 260 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALL 339 (638)
T ss_pred hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhh
Confidence 899999997732 122233 333433222 2345566666677888887
Q ss_pred c--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Q psy2281 109 S--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILMC 162 (287)
Q Consensus 109 s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l 162 (287)
+ |+ ..+.+..|+.+++.++++..++...+. ++.....+++.+.| |++.+++..
T Consensus 340 RpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 340 RPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred ccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 6 44 468899999999999999988875542 45567788876665 666665543
No 438
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.42 E-value=8.8e-16 Score=125.01 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+.+.++..+.+|+. ++|.||||+|||||++++++.. .+. .|.+|+.+.-........+..+.++++...+
T Consensus 15 ~l~~is~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~---- 88 (200)
T cd03217 15 ILKGVNLTIKKGEV--HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE---- 88 (200)
T ss_pred eeeccceEECCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh----
Confidence 45566666788988 9999999999999999999984 232 6777775422111111111123333333211
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
++..+..+.. +. ....+|+|+.|+ |+...|.++++|||+
T Consensus 89 ------------------~~~~~~~~~l-------~~-----------~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 89 ------------------IPGVKNADFL-------RY-----------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred ------------------ccCccHHHHH-------hh-----------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111111 11 113567776666 777778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH----HHhccChhHHHH-HHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLE-VRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~-~~~~~~~l 213 (287)
+++|......+.+.+.++.+. ++++|+...+.. .+++++.+
T Consensus 133 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 178 (200)
T cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVL 178 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEE
Confidence 999999888888888888653 779999988777 67877644
No 439
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.42 E-value=5.5e-12 Score=112.04 Aligned_cols=150 Identities=23% Similarity=0.355 Sum_probs=100.6
Q ss_pred CCCCCCccCcHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKE-----------G-DFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~-----------g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
...++++.|.+..++.+...+.. | ..|. ++|+||||||||++++++++.+...
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~ 197 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYI 197 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhh
Confidence 34567888888888777776521 1 1222 9999999999999999999876533
Q ss_pred --------------------EEEEeCCCCCC-----------HHHHHHHHHHHHh---c--cCCcEEEEEeCCCCCCcHH
Q psy2281 63 --------------------VIILNETDHLT-----------REAQQALRRTMEK---Y--ITTCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 --------------------~i~ide~d~l~-----------~~~~~~l~~~i~~---~--~~~~~~i~~~~~~~~l~~~ 106 (287)
+|++||+|.+. ...+..+...+.. . ..+..++.++|..+.+.++
T Consensus 198 g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~a 277 (364)
T TIGR01242 198 GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA 277 (364)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChh
Confidence 89999998763 1223444444432 2 2245677777778888888
Q ss_pred Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHH
Q psy2281 107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAIL 160 (287)
Q Consensus 107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~ 160 (287)
+.+ |+ ..+.|+.|+.++..+++...+....+. ++.....+++.+ ++|++..+.
T Consensus 278 l~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 278 LLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred hcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 875 55 468899999999999998877665542 112345555544 445555444
No 440
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.41 E-value=7.5e-15 Score=138.03 Aligned_cols=176 Identities=19% Similarity=0.145 Sum_probs=119.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+||||+++.+++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..+.
T Consensus 350 ~l~~i~~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~lf-~~ti 425 (585)
T TIGR01192 350 GVFDVSFEAKAGQT--VAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI-NTVTRESLRKSIATVFQDAGLF-NRSI 425 (585)
T ss_pred cccceeEEEcCCCE--EEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh-hhCCHHHHHhheEEEccCCccC-cccH
Confidence 45556666688988 9999999999999999999988765 788888653 2222345677888888887544 3344
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
.+|+..+ -+..+++++.+.++.. +... |+ +....+....+|+|+.|| |+...|++++
T Consensus 426 ~~Ni~~~---------~~~~~~~~~~~a~~~~~~~~~i~~l~~g~--~t~~~~~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 426 RENIRLG---------REGATDEEVYEAAKAAAAHDFILKRSNGY--DTLVGERGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred HHHHhcC---------CCCCCHHHHHHHHHHhCcHHHHHhccccc--cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444221 1223455555444321 1111 22 222223344689998888 6777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|..+...+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i~~l 542 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLVLFL 542 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEEEEE
Confidence 99999999999888888888776433 779999877754 7776644
No 441
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.41 E-value=6.8e-15 Score=141.24 Aligned_cols=173 Identities=16% Similarity=0.135 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|+||+|+||||+++.|++...+. .|.+|+.+. ..-....+++.+.+++|++.+ +..|.
T Consensus 496 vL~~isl~i~~Ge~--vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~l-F~gTI 571 (711)
T TIGR00958 496 VLKGLTFTLHPGEV--VALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL-VQYDHHYLHRQVALVGQEPVL-FSGSV 571 (711)
T ss_pred cccCceEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH-HhcCHHHHHhhceEEecCccc-cccCH
Confidence 56666667789999 9999999999999999999998766 889998763 222356778889999998754 44566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+..+ .+..+++++.+.++. .++. ++...-+.-.++|||+.|| |+...+.+
T Consensus 572 reNI~~g---------~~~~~~e~i~~al~~----a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I 638 (711)
T TIGR00958 572 RENIAYG---------LTDTPDEEIMAAAKA----ANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638 (711)
T ss_pred HHHHhcC---------CCCCCHHHHHHHHHH----cCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 6776432 123345555544433 3320 1111111223589998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH--HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL--IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~--i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|..+...+.+ .....+. ++++|....+.. +|+++.+
T Consensus 639 LILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~~i~~-aD~IivL 686 (711)
T TIGR00958 639 LILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLSTVER-ADQILVL 686 (711)
T ss_pred EEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHHHHHh-CCEEEEE
Confidence 99999999999876555444 1111111 778999876654 6776654
No 442
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=4e-15 Score=150.81 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
+++.++..+++|++ ++|.||||+|||||+++|++...+. .|.+++.+. . ...+++.+.+++|+..++...
T Consensus 895 iL~~vs~~i~~Gel--~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~-~---~~~~~~~igyv~Q~d~~~~~l 968 (1470)
T PLN03140 895 LLREVTGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK-K---QETFARISGYCEQNDIHSPQV 968 (1470)
T ss_pred EeeCcEEEEECCeE--EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC-C---hHHhhhheEEEccccccCCCC
Confidence 34445555578888 9999999999999999999976421 567777552 2 123455678888876666666
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH-----HHHcCCcHHH-----HHHHHHHHhh
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL-----AQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-----~~~s~G~~r~-----al~~l~~~~~ 167 (287)
++.+++..+..-|. -...+.++..+.+.++++..++ ++.....+ ..+|+|+.|| ++...|++++
T Consensus 969 TV~E~L~~~a~lr~----~~~~~~~~~~~~v~~vl~~lgL--~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~ 1042 (1470)
T PLN03140 969 TVRESLIYSAFLRL----PKEVSKEEKMMFVDEVMELVEL--DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042 (1470)
T ss_pred cHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHCCC--hhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE
Confidence 67677655433121 1123455666778888888887 33333333 3699999888 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l 213 (287)
+|||++++|......+.+.++++.+. ++++|++. .+...+|+++.+
T Consensus 1043 LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1043 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 99999999999999999999998765 67889987 466677766543
No 443
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.40 E-value=1.3e-14 Score=147.28 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
++.++..+++|+. +.|.||||+|||||+++|++...+ . .|.+|+.+. .. .+++.+.+++|+..++...
T Consensus 779 L~~vs~~i~~Ge~--~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~-~~----~~~~~i~yv~Q~~~~~~~~ 851 (1394)
T TIGR00956 779 LNNVDGWVKPGTL--TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL-DS----SFQRSIGYVQQQDLHLPTS 851 (1394)
T ss_pred eeCCEEEEECCEE--EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC-Ch----hhhcceeeecccccCCCCC
Confidence 3444444577888 999999999999999999998752 1 678888663 21 3566788888876666666
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHH-----HHHHHHH-Hhh
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRR-----AILMCEA-SKV 167 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~-----al~~l~~-~~~ 167 (287)
|+.+++....+-|. -...+.++..+.+.++++..++ .+.....+. .+|+|+.|| ++...|+ +++
T Consensus 852 Tv~E~L~~~a~l~~----~~~~~~~~~~~~v~~~l~~l~L--~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl 925 (1394)
T TIGR00956 852 TVRESLRFSAYLRQ----PKSVSKSEKMEYVEEVIKLLEM--ESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF 925 (1394)
T ss_pred CHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHcCC--hhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence 77777665433121 0123556667788888888887 333333343 699999888 5666675 889
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH----HHhccChhH-HHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKK-LLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~-~~~~~~~~~~l 213 (287)
+|||++++|......+.+.++++.+. |+++|++.. +...+|++..+
T Consensus 926 LDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 99999999999999999999998765 678899875 34566776544
No 444
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.40 E-value=1.3e-15 Score=142.39 Aligned_cols=178 Identities=15% Similarity=0.031 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
..+.+.++..+.+|++ ++|.||||||||||+++|++.+.+. .|.++.. ..+.+++|++.++...
T Consensus 20 ~~il~~vs~~i~~Ge~--~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~ 85 (556)
T PRK11819 20 KQILKDISLSFFPGAK--IGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKVGYLPQEPQLDPEK 85 (556)
T ss_pred CeeeeCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEecCCCCCCCC
Confidence 3456677777789999 9999999999999999999987654 4444421 1244455554333222
Q ss_pred CCCCCCcHHHhc------cccee--ecCCC---------------------CHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2281 98 NSMSQVIPAIRS------RCLCI--RIPAP---------------------THEEIVSVLTNICKKEGLTIPPEFALRLA 148 (287)
Q Consensus 98 ~~~~~l~~~l~s------r~~~~--~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 148 (287)
+..+++..++.. +.... .+... ...+....+...++..|+ +. ..+.+.
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~-~~~~~~ 162 (556)
T PRK11819 86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC--PP-WDAKVT 162 (556)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC--Cc-ccCchh
Confidence 333443322110 00000 00000 001123455666777777 32 456778
Q ss_pred HHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281 149 QQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 149 ~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++|+|+.+| ++...|.++++|||++++|......+.+.+.++... |+++|+.+.+..++++++.+-
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~ 234 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELD 234 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEe
Confidence 999999888 666668999999999999998888777777665333 779999999999999887553
No 445
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.40 E-value=5.3e-12 Score=123.10 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=121.6
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------- 62 (287)
.+.++.||..++.++|+.+.+..+...+..+..++.+|+||||+|||++++.++..+...
T Consensus 162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 356788999999999999988888888877777779999999999999999998775210
Q ss_pred ---------------------------EEEEeCCCCCCH--------HHHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281 63 ---------------------------VIILNETDHLTR--------EAQQALRRTMEKYITTCRLILCANSMS-----Q 102 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~~--------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~ 102 (287)
+++|||+|.+.. +..+.|...++. ....+|.++|..+ +
T Consensus 242 a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 242 AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEYRKYIE 319 (852)
T ss_pred hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHHHHHhh
Confidence 899999997642 223344433331 2334555555432 3
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHHH------HHHHHHHHhh
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNLRR------AILMCEASKV 167 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~r~------al~~l~~~~~ 167 (287)
..+++.+||+.+.++.|+.++...++.....+ .++.+.++++..++.+|.+-+.. |+..++..+.
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 68899999999999999999999988776555 35667899999999988765433 7777776553
No 446
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.40 E-value=1.3e-14 Score=122.80 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. ++|.||||+|||||+++|++...+. .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus 36 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i-~~~~~~~~~~~i~~v~q~~~l~~-~tv 111 (257)
T cd03288 36 VLKHVKAYIKPGQK--VGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI-SKLPLHTLRSRLSIILQDPILFS-GSI 111 (257)
T ss_pred ceeEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh-hhCCHHHHhhhEEEECCCCcccc-cHH
Confidence 34455555578888 9999999999999999999987644 778887652 22112344566777777664432 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHH-----HHHHHHh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVL-----TNICKKE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l-----~~~~~~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
.+++... ...........+ ...++.. ++ +.........+|+|+.|+ |+...|++++
T Consensus 112 ~~nl~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 179 (257)
T cd03288 112 RFNLDPE----------CKCTDDRLWEALEIAQLKNMVKSLPGGL--DAVVTEGGENFSVGQRQLFCLARAFVRKSSILI 179 (257)
T ss_pred HHhcCcC----------CCCCHHHHHHHHHHhCcHHHHhhccccc--CcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333210 011122222211 1122221 22 222223345789998888 6777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|+.....+.+.+.++.+. ++++|+...+.. +++++.+
T Consensus 180 lDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l 227 (257)
T cd03288 180 MDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVL 227 (257)
T ss_pred EeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEE
Confidence 99999999988877777777665332 678999988875 7777654
No 447
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.39 E-value=1.9e-15 Score=141.15 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++ + . .+.+++++.. +....+
T Consensus 337 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-~----------~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 337 LIDDLSFKLPPGGI--VGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-V----------KLAYVDQSRDALDPNKT 402 (552)
T ss_pred eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-e----------EEEEEeCCccccCCCCc
Confidence 45556666688999 9999999999999999999987654 444443 1 0 2445555431 222122
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
..+++..+.. .......+ .....+++..++ .. ...+.+.++|+|+.+| ++...+.++++|||+
T Consensus 403 v~e~l~~~~~-------~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 403 VWEEISGGLD-------IIQLGKRE--VPSRAYVGRFNF--KGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred HHHHHHhhcc-------ccccCcch--HHHHHHHHhCCC--ChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 2223222111 11111111 123356666776 43 3456788999999988 677778999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++... |+++|+...+..++++++.+
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l 513 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAF 513 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999999888888777776323 77999999999999987754
No 448
>KOG0055|consensus
Probab=99.39 E-value=3.8e-14 Score=137.14 Aligned_cols=177 Identities=16% Similarity=0.098 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..++.|+. +.|+||+||||||.+..|-+...++ .|.||+.|. ..-..+.||+.|.-++|.+.+ +.+|
T Consensus 1004 ~Il~~l~l~i~~GqT--vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di-k~lnl~~LR~~i~lVsQEP~L-F~~T 1079 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQT--VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI-KDLNLKWLRKQIGLVSQEPVL-FNGT 1079 (1228)
T ss_pred hhhcCCcEEecCCCE--EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc-ccCCHHHHHHhcceeccCchh-hccc
Confidence 345666666788988 9999999999999999999998776 899998774 222367899999999998864 5567
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh---CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE---GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ 168 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~ 168 (287)
..+|+..+. ...+.+++.+.++..=... ++ .++..+-++=.++|||+.|| |+.-.|+++++
T Consensus 1080 IrENI~YG~---------~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLL 1150 (1228)
T KOG0055|consen 1080 IRENIAYGS---------EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLL 1150 (1228)
T ss_pred HHHHHhccC---------CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeee
Confidence 888887761 1256777776665421110 11 12333444455788998888 88888999999
Q ss_pred CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281 169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~ 211 (287)
||.|+++|..+.+.+.+.++..... +++.|....++. +|.++
T Consensus 1151 DEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~ 1195 (1228)
T KOG0055|consen 1151 DEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIA 1195 (1228)
T ss_pred eccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEE
Confidence 9999999999888777777776554 678888777765 34444
No 449
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.5e-15 Score=141.23 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~ 97 (287)
+.+.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++. +.+.+++++.. +....
T Consensus 334 ~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 334 LFKNLNLLLEAGER--LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------ANIGYYAQDHAYDFENDL 399 (530)
T ss_pred eecCcEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------------eEEEEEcccccccCCCCC
Confidence 44555566688988 9999999999999999999987654 5656541 12444444332 11011
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+..++ +.. +.... ...+.+...++..++. .+.....+.++|+|+.|| ++...+.++++|||+
T Consensus 400 t~~~~----~~~------~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 400 TLFDW----MSQ------WRQEG--DDEQAVRGTLGRLLFS-QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred cHHHH----HHH------hccCC--ccHHHHHHHHHHcCCC-hhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111 110 11111 1123455667777762 234566788999999988 666678899999999
Q ss_pred ccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~ 214 (287)
+++|......+.+.+.++... |+++|+...+..++++++.+.
T Consensus 467 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~ 509 (530)
T PRK15064 467 NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEIT 509 (530)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999888777777665222 779999999999999887553
No 450
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.39 E-value=2e-14 Score=114.05 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=84.9
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~ 106 (287)
.+++|++ +.|.||||+|||||++++++...+. .|.+++.+ +.+.++
T Consensus 21 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q----------------- 68 (177)
T cd03222 21 VVKEGEV--IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQ----------------- 68 (177)
T ss_pred EECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEcc-----------------
Confidence 4478888 9999999999999999999987654 56666521 000000
Q ss_pred HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCc
Q psy2281 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEP 181 (287)
Q Consensus 107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~ 181 (287)
.+. +|+|+.|+ ++...+.++++|||++++|.....
T Consensus 69 -----------~~~-----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 69 -----------YID-----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -----------cCC-----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 000 56665555 777778999999999999999988
Q ss_pred cHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 182 DWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 182 ~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.+.++.++ ++++|+...+..++++++.+
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 888888887642 77999999999888877644
No 451
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.39 E-value=3.1e-14 Score=117.54 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++..+.+|++ ++|.||||+|||||+++|++...+. .|.+++.+..... .....++.+.+++++..++ .
T Consensus 16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~ 92 (218)
T cd03290 16 TLSNINIRIPTGQL--TMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-N 92 (218)
T ss_pred ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-c
Confidence 44455556678888 9999999999999999999987654 6778875432111 0112234466666665443 2
Q ss_pred eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMC 162 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l 162 (287)
.+..+++... ...+.+.. ...++..++. .+......+..+|+|+.|| |+...
T Consensus 93 ~t~~~nl~~~----------~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 93 ATVEENITFG----------SPFNKQRY----KAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred ccHHHHHhhc----------CcCCHHHH----HHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 3333333221 01122221 2233333331 0011123456799998888 77777
Q ss_pred HHHhhcCCCcccccCccCccHHH--HHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 163 EASKVQQYPFQIDQQIVEPDWKI--YIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 163 ~~~~~~dep~~~~d~~~~~~~~~--~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
|.++++|||++++|......+.+ .+..+.+. ++++|+...+. .+++++
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~ 212 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWII 212 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEE
Confidence 89999999999999887776665 44444432 77899987764 455543
No 452
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.39 E-value=1.7e-15 Score=123.78 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|++ ++|.||||+|||||++++++...+. .|.+++ .+.++++++.++ ..+.
T Consensus 20 il~~~s~~i~~G~~--~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------~i~~~~q~~~l~-~~t~ 82 (204)
T cd03250 20 TLKDINLEVPKGEL--VAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYVSQEPWIQ-NGTI 82 (204)
T ss_pred eeeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------EEEEEecCchhc-cCcH
Confidence 55666677789999 9999999999999999999987655 666776 244455554432 2233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ 169 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d 169 (287)
.+++.... ..+.+.....++ ..+......++.........+|+|+.|| |+...|+++++|
T Consensus 83 ~enl~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 83 RENILFGK----------PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred HHHhccCC----------CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33332210 111211111111 1111110001111223345688898877 777888999999
Q ss_pred CCcccccCccCccHHH-HHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKI-YIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~-~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
||++++|......+.+ .+.+..+. ++++|+...+.. +++++
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~ 198 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIV 198 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEE
Confidence 9999999887766655 34444332 778899877766 66543
No 453
>PRK05629 hypothetical protein; Validated
Probab=99.38 E-value=4.8e-10 Score=97.82 Aligned_cols=235 Identities=17% Similarity=0.158 Sum_probs=153.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHhcccc
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIRSRCL 112 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~sr~~ 112 (287)
..+.|.. +....+..+..--++++ +|++++.+.......+.+..++..+++++.+|++++.... +...++..+.
T Consensus 41 ~~~d~~e-~~~~~l~~~~t~slF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~ 119 (318)
T PRK05629 41 TTLKASE-VSQGELLDALSPSLFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAV 119 (318)
T ss_pred EEeeccc-CCHHHHHHhhCcCccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcce
Confidence 5666653 33466665432222223 8889987655444556778888888877777777654322 3345666777
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc-CCCccccc--CccCccHHHHHHH
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQ--QIVEPDWKIYIRD 189 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~-dep~~~~d--~~~~~~~~~~i~~ 189 (287)
++.+.++...++..|+.+.++..|+++++++.+++++.+++|+..+-+.+++++++ +++++..| ..........+++
T Consensus 120 ~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~ 199 (318)
T PRK05629 120 VHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFD 199 (318)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHH
Confidence 88998999999999999999999999999999999999999999999999998765 33444433 1122233345666
Q ss_pred HHHHHHhccChhHHHHHHH--------------------HHHHHH-hcC-CCHHHHHHH--HHHH-------HHHhCChH
Q psy2281 190 TAKLIISEQSPKKLLEVRT--------------------RLYELL-VHS-IPVNVLFKY--LLEG-------LLANCDSD 238 (287)
Q Consensus 190 l~~~i~~~~~~~~~~~~~~--------------------~~~~l~-~~~-~~~~~i~~~--~~~~-------~~~~~~~~ 238 (287)
+.+.+........+..+.+ .+..+. ..| .+...+.+. ++++ ..+.++..
T Consensus 200 l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~ 279 (318)
T PRK05629 200 IADLACAGQVSKAVASTRRALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGD 279 (318)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHH
Confidence 6666544422111111111 011121 122 133333321 2222 22256778
Q ss_pred HHHHHHHHHHHHhhHHhcCC-ChHHHHHHHHHHHHH
Q psy2281 239 LKSKSIEMAAMFEHRIHKGS-KPIFHIEAYVASFMA 273 (287)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~g~-~~~~~l~~~i~~~~~ 273 (287)
.+.+++..+.+.|..++.|. ++.+.||.++.++..
T Consensus 280 ~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~~~~ 315 (318)
T PRK05629 280 AVSEAVILMADLDAAVKGQGGDPEFAIESAVRRVAE 315 (318)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 88899999999999999855 888899999988765
No 454
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.38 E-value=2.8e-15 Score=140.08 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc-EEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC-RLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~-~~i~~~~ 98 (287)
+++.++..+.+|++ +.|.||||+|||||+++|++...+. .|.+++ + . .+.+++++. .+....+
T Consensus 339 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-~----------~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 339 LIDDLSFSLPPGGI--VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-V----------KLAYVDQSRDALDPNKT 404 (556)
T ss_pred eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-e----------EEEEEeCchhhcCCCCC
Confidence 45566666688999 9999999999999999999987654 444542 1 0 244555543 2222222
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
..+++..... .......+ ......++..++ .+ ...+.+.++|+|+.+| |+...+.++++|||+
T Consensus 405 v~e~l~~~~~-------~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 405 VWEEISGGLD-------IIKVGNRE--IPSRAYVGRFNF--KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred HHHHHHhhcc-------cccccccH--HHHHHHHHhCCC--ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 2233222111 11111111 123356677776 43 3466788999999998 666678999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|......+.+.+.++... |+++|+...+..++++++.+
T Consensus 474 ~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l 515 (556)
T PRK11819 474 NDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAF 515 (556)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 999999888888877776322 77999999999999987654
No 455
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.38 E-value=5.1e-14 Score=143.06 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=121.3
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.+++|+. ++|.||||+|||||+++|++... +. .|.+++.+. . +.....++.+.+++|+..++...++.++
T Consensus 83 ~i~~Ge~--~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~-~-~~~~~~r~~i~yv~Q~d~~~~~lTV~E~ 158 (1394)
T TIGR00956 83 LIKPGEL--TVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP-E-EIKKHYRGDVVYNAETDVHFPHLTVGET 158 (1394)
T ss_pred EEECCEE--EEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEeh-H-HHHhhcCceeEEeccccccCCCCCHHHH
Confidence 3366777 99999999999999999999752 11 678887652 1 1112233346667776656666667777
Q ss_pred CcHHHhcccceeecCCCCHHHHHHH-HHHHHHHhCCCCCHHHH-----HHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKEGLTIPPEFA-----LRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~-----~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
+..+.+-|.........+.++..+. .+.+++..|+ ++... +.+..+|||+.|| ++...+.++++|||
T Consensus 159 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL--~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEP 236 (1394)
T TIGR00956 159 LDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL--SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA 236 (1394)
T ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc--ccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCC
Confidence 6665443321101112344444333 4557777777 33222 2345799999999 67777899999999
Q ss_pred cccccCccCccHHHHHHHHHHH-----HHhccCh-hHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSP-KKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~-~~~~~~~~~~~~l 213 (287)
++++|......+.+.++++.+. ++++|++ ..+....|+++.+
T Consensus 237 TsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L 284 (1394)
T TIGR00956 237 TRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284 (1394)
T ss_pred CCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence 9999999999999999998764 6678885 6788888877633
No 456
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.38 E-value=3.2e-15 Score=139.66 Aligned_cols=176 Identities=13% Similarity=0.032 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+.+|+. ++|+||||+|||||+++|++...+. .|.++.. ..+.+++|+..++...+
T Consensus 19 ~il~~is~~i~~Ge~--~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~t 84 (552)
T TIGR03719 19 EILKDISLSFFPGAK--IGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKVGYLPQEPQLDPTKT 84 (552)
T ss_pred eeecCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCCCCCCc
Confidence 355667777789999 9999999999999999999987654 4555421 12455555543333333
Q ss_pred CCCCCcHHHhc------cccee--ecCCCCHH---------------------HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2281 99 SMSQVIPAIRS------RCLCI--RIPAPTHE---------------------EIVSVLTNICKKEGLTIPPEFALRLAQ 149 (287)
Q Consensus 99 ~~~~l~~~l~s------r~~~~--~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~l~~ 149 (287)
..+++..++.. ++..+ .+.....+ +....+...++..|+. . ....+.+
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~ 161 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--P-WDADVTK 161 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--c-ccCchhh
Confidence 44444332210 00000 00011110 1123344555555662 2 3456788
Q ss_pred HcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 150 QSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 150 ~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+|+.+| ++...|.++++|||++.+|......+.+.+.++... |+++|+.+.+..++++++.+
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 99999888 666678999999999999999888777776665323 77999999999999987755
No 457
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=2.4e-13 Score=104.27 Aligned_cols=196 Identities=15% Similarity=0.078 Sum_probs=125.4
Q ss_pred CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC-------CCHHHHHHHH
Q psy2281 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH-------LTREAQQALR 81 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~-------l~~~~~~~l~ 81 (287)
..+..++|.......++..+..|+. +.|+|.+|+|||||++|++..+.++ .+..+.-+. +++.....|.
T Consensus 10 ~~lsk~Yg~~~gc~~vsF~l~PGeV--LgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~ 87 (258)
T COG4107 10 SGLSKLYGPGKGCRDVSFDLYPGEV--LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLL 87 (258)
T ss_pred hhhhhhhCCCcCccccceeecCCcE--EEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHh
Confidence 3455666666667777888889999 9999999999999999999998876 444443221 2222222232
Q ss_pred H-HHHhccCCcE--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-
Q psy2281 82 R-TMEKYITTCR--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR- 157 (287)
Q Consensus 82 ~-~i~~~~~~~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~- 157 (287)
+ --+.+.|++. +=+..+...|+-+.+.. ...-....++......+++..+.. +.........|||..+|
T Consensus 88 RTeWG~VhQnP~DGLRm~VSAG~NiGERlma------~G~RHYG~iR~~a~~WL~~VEI~~-~RiDD~PrtFSGGMqQRL 160 (258)
T COG4107 88 RTEWGFVHQNPRDGLRMQVSAGGNIGERLMA------IGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFSGGMQQRL 160 (258)
T ss_pred hhccceeecCccccceeeeccCCccchhHHh------hhhhhhhhHHHHHHHHHHhcccCc-ccccCcccccchHHHHHH
Confidence 2 2344455542 33333344444433221 111112244455555555555532 22344566788886666
Q ss_pred ----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281 158 ----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV 215 (287)
Q Consensus 158 ----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~ 215 (287)
-+..-|++.++|||+.++|......+.+.++.++.+ ++++|+...+.-+.+++..+..
T Consensus 161 QiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~ 227 (258)
T COG4107 161 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ 227 (258)
T ss_pred HHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC
Confidence 344557889999999999999888888999988866 7799999888888888765533
No 458
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=7.5e-12 Score=120.60 Aligned_cols=146 Identities=20% Similarity=0.261 Sum_probs=100.3
Q ss_pred CCCCCccCcHHHHHHHHHHHh-----------cC-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLK-----------EG-DFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~-----------~g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
.+++++.|.+.+++.+...+. -| ..|. ++|+||||||||+++++++++...+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG 529 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence 367888888888888877662 12 2233 8999999999999999999887543
Q ss_pred -------------------EEEEeCCCCCCH------------HHHHHHHHHHHhcc--CCcEEEEEeCCCCCCcHHHhc
Q psy2281 63 -------------------VIILNETDHLTR------------EAQQALRRTMEKYI--TTCRLILCANSMSQVIPAIRS 109 (287)
Q Consensus 63 -------------------~i~ide~d~l~~------------~~~~~l~~~i~~~~--~~~~~i~~~~~~~~l~~~l~s 109 (287)
++++||+|.+.. ...+.|+..++... .+..++.++|.++.+.+++++
T Consensus 530 ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allR 609 (733)
T TIGR01243 530 ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLR 609 (733)
T ss_pred cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcC
Confidence 999999987632 12344555565432 234455666677889999875
Q ss_pred --ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHH
Q psy2281 110 --RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRR 157 (287)
Q Consensus 110 --r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~ 157 (287)
||. .+.++.|+.++..++++...++..+. ++..+..+++.+ |.|+..
T Consensus 610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~ 663 (733)
T TIGR01243 610 PGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEA 663 (733)
T ss_pred CCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHH
Confidence 884 68899999999999988766554442 222355566544 445544
No 459
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.37 E-value=2.3e-14 Score=146.93 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=126.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.|+|++|+||||++++|.+...+. .|.||+.|. ..-....+|+.+..++|++.++ ..|.
T Consensus 1301 vL~~is~~I~~Gek--iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI-~~i~~~~LR~~i~iVpQdp~LF-~gTI 1376 (1522)
T TIGR00957 1301 VLRHINVTIHGGEK--VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI-AKIGLHDLRFKITIIPQDPVLF-SGSL 1376 (1522)
T ss_pred cccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEc-cccCHHHHHhcCeEECCCCccc-CccH
Confidence 56666667789999 9999999999999999999988765 899999884 3333567899999999998554 4577
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHH--hCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKK--EGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~--~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
.+|+.+ +...+++++.+.++.. ... .|+ +....+.=..+|+|+.|+ |+...+++++
T Consensus 1377 r~NLdp----------~~~~sdeei~~al~~a~l~~~I~~lp~GL--dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1377 RMNLDP----------FSQYSDEEVWWALELAHLKTFVSALPDKL--DHECAEGGENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred HHHcCc----------ccCCCHHHHHHHHHHcCcHHHHhhCccCC--CceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 788865 4456777776655542 111 111 111111123478887777 6777788999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+||||+++|..+...+.+.+++..+. |+++|....+.. +|+++.+
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVl 1492 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVL 1492 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEE
Confidence 99999999988877777777665443 778999888776 4777644
No 460
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.37 E-value=2.4e-15 Score=118.70 Aligned_cols=137 Identities=20% Similarity=0.128 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+.+|+. +++.||||+|||||++++++...+. .|.+++. +.+.+++++..+ +..+.
T Consensus 16 ~l~~i~l~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~-~~~tv 80 (166)
T cd03223 16 LLKDLSFEIKPGDR--LLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYL-PLGTL 80 (166)
T ss_pred eeecCeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCcc-ccccH
Confidence 44555566688998 9999999999999999999987654 5555541 123333333211 00111
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++. +. ...++|+|+.|| |+...+.++++|||+++
T Consensus 81 ~~nl~-----------~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~ 121 (166)
T cd03223 81 REQLI-----------YP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA 121 (166)
T ss_pred HHHhh-----------cc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 11110 00 134567776666 77778899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++... ++++|+... ...+|+++.+
T Consensus 122 LD~~~~~~l~~~l~~~~~tiiivsh~~~~-~~~~d~i~~l 160 (166)
T cd03223 122 LDEESEDRLYQLLKELGITVISVGHRPSL-WKFHDRVLDL 160 (166)
T ss_pred cCHHHHHHHHHHHHHhCCEEEEEeCChhH-HhhCCEEEEE
Confidence 9998888777777765322 678898764 3466665443
No 461
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.37 E-value=6.1e-12 Score=122.33 Aligned_cols=150 Identities=13% Similarity=0.209 Sum_probs=113.3
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C-----------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P----------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~----------- 62 (287)
.+++.||..++.++|+++.+..+-.++.....++++|+||||+|||++++.++..+.. .
T Consensus 168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a 247 (857)
T PRK10865 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 247 (857)
T ss_pred HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh
Confidence 3567899999999999988888888776777777999999999999999999987631 0
Q ss_pred --------------------------EEEEeCCCCCCHH--------HHHHHHHHHHhccCCcEEEEEeCCCC-----CC
Q psy2281 63 --------------------------VIILNETDHLTRE--------AQQALRRTMEKYITTCRLILCANSMS-----QV 103 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~~--------~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l 103 (287)
+++|||+|.+... .++.|...++. ....+|.++|..+ +.
T Consensus 248 g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~ 325 (857)
T PRK10865 248 GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEK 325 (857)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhh
Confidence 8999999987532 34445444442 2344555555544 37
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCcH
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE----GLTIPPEFALRLAQQSDRNL 155 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~s~G~~ 155 (287)
.+++.+||+.+.+..|+.++...+++.+..+. ++.+++++....+.+|.+-+
T Consensus 326 d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 326 DAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred cHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 88999999888899999999998887766543 56678888888777776544
No 462
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.37 E-value=2.5e-11 Score=117.75 Aligned_cols=152 Identities=18% Similarity=0.307 Sum_probs=115.7
Q ss_pred CCccCcHHHHHHHHHHHhc---C----CCCc--EEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKE---G----DFPH--LLFYGPSGAGKKTRIMALLKELYGP---------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~---g----~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------- 62 (287)
+.++||..++..+...+.. | ..|. ++|+||+|+|||.++++++..+++.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 3578899888877777621 1 2232 7999999999999999999888532
Q ss_pred -------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCCCC-----
Q psy2281 63 -------------------------VIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANSMS----- 101 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~~~----- 101 (287)
+|++||++..+++.++.|++.++.-. .++.+|+++|...
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~ 725 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA 725 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence 89999999999999999998887542 5677777766411
Q ss_pred ------------------------CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh--------C--CCCCHHHHHHH
Q psy2281 102 ------------------------QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE--------G--LTIPPEFALRL 147 (287)
Q Consensus 102 ------------------------~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~--------~--~~~~~~~~~~l 147 (287)
.+.+++.+|+.++.|.+++.+++.+++...+... | +.+++.+.+++
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~L 805 (852)
T TIGR03345 726 LCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHI 805 (852)
T ss_pred hccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHH
Confidence 1456788999999999999999998887765431 4 35789999999
Q ss_pred HHHcCC---cHHHHHHHHHHH
Q psy2281 148 AQQSDR---NLRRAILMCEAS 165 (287)
Q Consensus 148 ~~~s~G---~~r~al~~l~~~ 165 (287)
++.+.+ +.|.....++..
T Consensus 806 a~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 806 VARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHcCCCCCChHHHHHHHHHH
Confidence 988766 566666665543
No 463
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.37 E-value=4.8e-15 Score=140.47 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
+++.++..+..|+. ++|.||||+|||||+++|++.+.+. .|.++. + + .+.+++++.. +....+
T Consensus 334 il~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~-~----------~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 334 LVKDFSAQVQRGDK--IALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-K-L----------EVAYFDQHRAELDPEKT 399 (635)
T ss_pred EEcCcEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-C-c----------EEEEEeCcccccCCCCC
Confidence 44555556688888 9999999999999999999987654 444432 1 0 1334443321 111112
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
..+++..... .+ ..+ .....+..++...++. .+.....+..+|+|+.+| ++..-+.++++|||++
T Consensus 400 v~e~l~~~~~------~~-~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 400 VMDNLAEGKQ------EV-MVN--GRPRHVLGYLQDFLFH-PKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred HHHHHHhhcc------cc-ccc--chHHHHHHHHHhcCCC-HHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 2222211100 00 011 1123455666666762 234567788999999988 5556678999999999
Q ss_pred cccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
++|......+.+.+.++... |+++|+...+..++++++.+
T Consensus 470 ~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l 510 (635)
T PRK11147 470 DLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIF 510 (635)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEE
Confidence 99988877666666554222 77999999999999887755
No 464
>KOG1968|consensus
Probab=99.36 E-value=3.6e-12 Score=121.92 Aligned_cols=166 Identities=24% Similarity=0.381 Sum_probs=131.8
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcC--------------CCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG--------------DFPH--LLFYGPSGAGKKTRIMALLKELYGP-- 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g--------------~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-- 62 (287)
|+.|.++|+|++..++.++......+..++..- .... ++++||+|.||||.+.+.++.+...
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 458999999999999999887666666666321 1111 4899999999999999999988644
Q ss_pred --------------------------------------------EEEEeCCCCCCHHHHH---HHHHHHHhccCCcEEEE
Q psy2281 63 --------------------------------------------VIILNETDHLTREAQQ---ALRRTMEKYITTCRLIL 95 (287)
Q Consensus 63 --------------------------------------------~i~ide~d~l~~~~~~---~l~~~i~~~~~~~~~i~ 95 (287)
+|++||+|.+..+... .+-..+. .....+++
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~ 464 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVC 464 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hccCCeEE
Confidence 8999999998774333 3333333 23456888
Q ss_pred EeCCCCCCcH-HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281 96 CANSMSQVIP-AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168 (287)
Q Consensus 96 ~~~~~~~l~~-~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~ 168 (287)
+||....... ++.+-|.-++|..|+...+..++..++..+++.+++..++.+.++++||+|+.++.++.+.+.
T Consensus 465 ~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 465 TCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred EecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 8888765333 555567778999999999999999999999999999999999999999999999999988665
No 465
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.1e-14 Score=110.45 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
.......+...+..|+. +.+.||||+|||||+|++++.+.++ -|.+++...-.. .+...+.+-+.....-+=..
T Consensus 14 e~~lf~~L~f~l~~Ge~--~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~--~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 14 ERTLFSDLSFTLNAGEA--LQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV--RESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cceeecceeEEEcCCCE--EEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc--hhhHHHHHHHhhccccccch
Confidence 33445566677788999 9999999999999999999999877 677775442111 11122333333333333333
Q ss_pred eCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-HHHHH----HHHhhcCC
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-AILMC----EASKVQQY 170 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-al~~l----~~~~~~de 170 (287)
.|..+|+.+--. |... +... +...++..|+ ..-....+.++|.|+.|| |+.-+ ..+.++||
T Consensus 90 LTa~ENL~F~~~-------~~~~~~~~~----i~~Al~~vgL--~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE 156 (209)
T COG4133 90 LTALENLHFWQR-------FHGSGNAAT----IWEALAQVGL--AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE 156 (209)
T ss_pred hhHHHHHHHHHH-------HhCCCchhh----HHHHHHHcCc--ccccccchhhcchhHHHHHHHHHHHcCCCCceeecC
Confidence 455566543211 3232 2322 3344555666 444555677899998888 44433 45667899
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKK 202 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~ 202 (287)
|++.+|......+...+..=+.. ++.+|.+-.
T Consensus 157 P~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 157 PFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999977765544444333322 556666543
No 466
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.36 E-value=1e-11 Score=107.03 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=85.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------------------EEEEeCCCCCCHH---
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP---------------------------------------VIILNETDHLTRE--- 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------------~i~ide~d~l~~~--- 75 (287)
++|+||||||||.+++++++++... +|+|||+|.+.+.
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~ 230 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT 230 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC
Confidence 8999999999999999999998654 8999999975421
Q ss_pred ------HH---HHHHHHHHhc--------------cCCcEEEEEeCCCCCCcHHHhc--ccceeecCCCCHHHHHHHHHH
Q psy2281 76 ------AQ---QALRRTMEKY--------------ITTCRLILCANSMSQVIPAIRS--RCLCIRIPAPTHEEIVSVLTN 130 (287)
Q Consensus 76 ------~~---~~l~~~i~~~--------------~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~~~~~~~~~~l~~ 130 (287)
.+ ..|...++.+ .....+|.++|.++.|.+++++ |+..+ +..|+.++..++++.
T Consensus 231 ~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~ 309 (413)
T PLN00020 231 TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHG 309 (413)
T ss_pred CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHH
Confidence 11 2344444321 2234567777888899999998 77543 347899999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281 131 ICKKEGLTIPPEFALRLAQQSDRN 154 (287)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~s~G~ 154 (287)
+++..++ +......+++...|+
T Consensus 310 ~~r~~~l--~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 310 IFRDDGV--SREDVVKLVDTFPGQ 331 (413)
T ss_pred HhccCCC--CHHHHHHHHHcCCCC
Confidence 9988877 667777787777765
No 467
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.35 E-value=4.3e-14 Score=143.85 Aligned_cols=175 Identities=13% Similarity=0.034 Sum_probs=126.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------------------------------------
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------------------- 61 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------------------- 61 (287)
+++.++..+++|+. +.|+||+||||||+++.|.+...+
T Consensus 1183 vL~~lsl~i~~G~~--vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKT--TAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred cccCeeEEEcCCCE--EEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 56666667789999 999999999999999999999876
Q ss_pred --------------C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHH
Q psy2281 62 --------------P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIV 125 (287)
Q Consensus 62 --------------~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~ 125 (287)
. .|.+|+.|. ..-....+++.+.+++|++.+ +..|..+||..+ -+..+++++.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di-~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g---------~~~at~eeI~ 1329 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDI-CDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFG---------KEDATREDVK 1329 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEH-HhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcC---------CCCCCHHHHH
Confidence 1 689999873 222356789999999998754 566777777543 1234666655
Q ss_pred HHHHHHHHHhCC-----CC----CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHH
Q psy2281 126 SVLTNICKKEGL-----TI----PPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA 191 (287)
Q Consensus 126 ~~l~~~~~~~~~-----~~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~ 191 (287)
+.++. .++ .+ +..+-+.=..+|||+.|| |+...|+++++||||+++|..+...+.+.+.++.
T Consensus 1330 ~A~k~----A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1330 RACKF----AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405 (1466)
T ss_pred HHHHH----cCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 54443 222 01 111112223488888877 7888899999999999999999888888888874
Q ss_pred H--H---HHhccChhHHHHHHHHHHHHH
Q psy2281 192 K--L---IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 192 ~--~---i~~~~~~~~~~~~~~~~~~l~ 214 (287)
. . |+++|....+.. +|+++.+-
T Consensus 1406 ~~~~~TvIiIaHRlsti~~-aD~Ivvl~ 1432 (1466)
T PTZ00265 1406 DKADKTIITIAHRIASIKR-SDKIVVFN 1432 (1466)
T ss_pred ccCCCEEEEEechHHHHHh-CCEEEEEe
Confidence 1 2 789999877665 67776553
No 468
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.35 E-value=1e-11 Score=119.25 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=97.7
Q ss_pred ccCcHHHHHHHHHHHh------cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------
Q psy2281 16 LDFHCKQANHLRNLLK------EGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------------- 62 (287)
Q Consensus 16 ~~~~~~~~~~l~~~~~------~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------- 62 (287)
.+|...+++.+..++. +...+.++|+||||+||||+++.+++.+..+
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~ 403 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP 403 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCC
Confidence 6777888887765552 1223339999999999999999999876433
Q ss_pred ---------------EEEEeCCCCCCHHH----HHHHHHHHHhc---------------cCCcEEEEEeCCCCCCcHHHh
Q psy2281 63 ---------------VIILNETDHLTREA----QQALRRTMEKY---------------ITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 63 ---------------~i~ide~d~l~~~~----~~~l~~~i~~~---------------~~~~~~i~~~~~~~~l~~~l~ 108 (287)
++++||+|.++... +.+|+..++.- ..+..|+.++|. -.+.++++
T Consensus 404 G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~-~~i~~aLl 482 (784)
T PRK10787 404 GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS-MNIPAPLL 482 (784)
T ss_pred cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC-CCCCHHHh
Confidence 79999999987653 46777777620 123334444443 46999999
Q ss_pred cccceeecCCCCHHHHHHHHHHHHH-----Hh-----CCCCCHHHHHHHHH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICK-----KE-----GLTIPPEFALRLAQ 149 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~ 149 (287)
+||.++.|.+++.++..+++++.+. +. .+.+++++...+++
T Consensus 483 ~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 483 DRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred cceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 9999999999999999988877663 11 24568888888876
No 469
>KOG1942|consensus
Probab=99.35 E-value=7.6e-11 Score=97.72 Aligned_cols=105 Identities=25% Similarity=0.306 Sum_probs=86.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC-------------CCCcHHHhcccceeecCCCCHHHHHHHHH
Q psy2281 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM-------------SQVIPAIRSRCLCIRIPAPTHEEIVSVLT 129 (287)
Q Consensus 63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~-------------~~l~~~l~sr~~~~~~~~~~~~~~~~~l~ 129 (287)
++||||++.+.-+....|.+.++.+- .+.++|.+|.. ..+.+.+..|..+++-.++++++++++++
T Consensus 299 VLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 299 VLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred ceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence 99999999999999999999998754 34456655431 23788899999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhhc
Q psy2281 130 NICKKEGLTIPPEFALRLAQQSD-RNLRRAILMCEASKVQ 168 (287)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~s~-G~~r~al~~l~~~~~~ 168 (287)
..++.+|+.++++++..+++.+. ..+|.++.+++...++
T Consensus 378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ 417 (456)
T KOG1942|consen 378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASIL 417 (456)
T ss_pred HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHH
Confidence 99999999999999999998754 4788888888755444
No 470
>KOG0742|consensus
Probab=99.35 E-value=3.1e-11 Score=104.17 Aligned_cols=126 Identities=22% Similarity=0.340 Sum_probs=95.7
Q ss_pred CCC-CCCccCcHHHHHHHHHHH--------hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 10 PNN-LQKLDFHCKQANHLRNLL--------KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 10 p~~-~~~~~~~~~~~~~l~~~~--------~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
++. |++++.++.....+..+. .++-+.+++||||||+|||..++-|+....-+
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVT 429 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVT 429 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHH
Confidence 444 888888888777777665 22334469999999999999999999876533
Q ss_pred ----------------EEEEeCCCCC---------CHHH---HHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhccc-ce
Q psy2281 63 ----------------VIILNETDHL---------TREA---QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC-LC 113 (287)
Q Consensus 63 ----------------~i~ide~d~l---------~~~~---~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~-~~ 113 (287)
++||||+|.+ +... .++|+-.-+.-+.+..+++.+|.+..++.++-.|+ .+
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~ 509 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEV 509 (630)
T ss_pred HHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhhe
Confidence 9999999863 3332 33333334445566788889999999999999999 58
Q ss_pred eecCCCCHHHHHHHHHHHHHHh
Q psy2281 114 IRIPAPTHEEIVSVLTNICKKE 135 (287)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~ 135 (287)
++|+.|..++..+.+...+.+.
T Consensus 510 veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 510 VEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred eecCCCChHHHHHHHHHHHHHH
Confidence 9999999999988888777653
No 471
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.9e-14 Score=136.28 Aligned_cols=166 Identities=16% Similarity=0.110 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+.+|+. +.|+||||+|||||+++|++...+. .|.+++- ..+++++|+....+ +.
T Consensus 327 il~~isl~i~~Ge~--~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~igy~~Q~~~~~l--~~ 390 (638)
T PRK10636 327 ILDSIKLNLVPGSR--IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IKLGYFAQHQLEFL--RA 390 (638)
T ss_pred eeccceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------------EEEEEecCcchhhC--Cc
Confidence 45556666688988 9999999999999999999987654 4555420 01333333211000 01
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
...+...+. .+. .......+..++...++. .+...+.+..+|||+.+| ++..-+.++++||||++
T Consensus 391 ~~~~~~~~~------~~~---~~~~~~~~~~~L~~~~l~-~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~ 460 (638)
T PRK10636 391 DESPLQHLA------RLA---PQELEQKLRDYLGGFGFQ-GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNH 460 (638)
T ss_pred cchHHHHHH------HhC---chhhHHHHHHHHHHcCCC-hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 111111111 011 112234566777777772 234567889999999998 55566789999999999
Q ss_pred ccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++... |+++|+...+..++++++.+
T Consensus 461 LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 461 LDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 9999888888877776222 77999999999999987754
No 472
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.34 E-value=4e-14 Score=132.41 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=112.8
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.|+||+|+||||+++.+++...++ .|.+|+.+. ..-....+++.+..++|++.++ ..+.
T Consensus 357 ~l~~vs~~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~lf-~~ti 432 (555)
T TIGR01194 357 ALGPIDLRIAQGDI--VFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAV-SADSRDDYRDLFSAIFADFHLF-DDLI 432 (555)
T ss_pred eeccceEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC-CCCCHHHHHhhCcEEccChhhh-hhhh
Confidence 45556666688998 9999999999999999999988766 788888653 2222445677788888876433 2333
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI----PPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.++. .+..++++ +.+.++..++.- -++..+....+|||+.|| |+...+.++++||
T Consensus 433 ~~n~------------~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 433 GPDE------------GEHASLDN----AQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred hccc------------ccchhHHH----HHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3332 11123333 344555555520 011122236799999888 7777789999999
Q ss_pred CcccccCccCccHHHHHH-HHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIR-DTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~-~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|+.+...+.+.+. .+... ++++|+...+ ..+|+++.+
T Consensus 497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l 543 (555)
T TIGR01194 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKL 543 (555)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEE
Confidence 999999988877765443 34322 7788987654 356665543
No 473
>KOG0061|consensus
Probab=99.34 E-value=5.7e-13 Score=125.03 Aligned_cols=177 Identities=20% Similarity=0.215 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILC 96 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~ 96 (287)
+.+.++...++|++ +++.||+|+|||||++++++..... .|.+++... . ...+++..+++.|+..++..
T Consensus 45 iL~~vsg~~~~Gel--~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~-~---~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 45 ILKGVSGTAKPGEL--LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR-D---SRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred eeeCcEEEEecCeE--EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC-c---hhhhhheeEEEccccccccc
Confidence 34444455578888 9999999999999999999988642 788887332 1 34566778888999999999
Q ss_pred eCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-----HHcCCcHHH-----HHHHHHHH
Q psy2281 97 ANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLA-----QQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 97 ~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-----~~s~G~~r~-----al~~l~~~ 165 (287)
.|+.+.+...-+-| .+. .+.++..++++.+++..|+ ..-+...+. ..|||+.|| -+...|.+
T Consensus 119 LTV~EtL~f~A~lr-----lp~~~~~~~k~~~V~~vi~~LgL--~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i 191 (613)
T KOG0061|consen 119 LTVRETLRFSALLR-----LPSSLSKEEKRERVEEVISELGL--EKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI 191 (613)
T ss_pred ccHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHcCC--hhhccceecCCCCCccccchhhHHHHHHHHHcCCCE
Confidence 99988877765532 222 4779999999999999998 333444443 499999999 23344678
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH----HHhccCh-hHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSP-KKLLEVRTRLY 211 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~-~~~~~~~~~~~ 211 (287)
+++||||+++|......+.+.+++++++ |.+=|.+ ..+-..-|+++
T Consensus 192 LflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~ 242 (613)
T KOG0061|consen 192 LFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL 242 (613)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh
Confidence 8899999999999988888999999887 3333443 45555666665
No 474
>PTZ00243 ABC transporter; Provisional
Probab=99.34 E-value=5.1e-14 Score=144.32 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+++|+. +.|+|++|+||||++++|.+...+. .|.+|+.|. ..-....+++.+..++|++.+ +..|.
T Consensus 1325 vL~~vsf~I~~Gek--VaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di-~~i~l~~LR~~I~iVpQdp~L-F~gTI 1400 (1560)
T PTZ00243 1325 VLRGVSFRIAPREK--VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREI-GAYGLRELRRQFSMIPQDPVL-FDGTV 1400 (1560)
T ss_pred eeecceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc-ccCCHHHHHhcceEECCCCcc-ccccH
Confidence 56667777789998 9999999999999999999988765 899999874 222356788999999999854 45677
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHH-HH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMC-EA 164 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l-~~ 164 (287)
.+|+.+ +...+++++.+.++. .++. ++....+.=.++|+|+.|+ |+... ++
T Consensus 1401 reNIdp----------~~~~sdeeI~~Al~~----a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1401 RQNVDP----------FLEASSAEVWAALEL----VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred HHHhCc----------ccCCCHHHHHHHHHH----CCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 788854 345667666665554 2330 1111111123589998888 44443 57
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++++||+|+.+|..+...+.+.+.+..+. |+++|....+.. +|+++.|
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL 1517 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVM 1517 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEE
Confidence 89999999999988888887777776443 779999987765 5777644
No 475
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=3.9e-11 Score=94.82 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=106.5
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-CC---EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-~~---~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
.......+++-++-|...|.-.. |.+..... .+ .++|++++.++..++++|++.+|+|++++.|++.++....++
T Consensus 20 l~~~~~~~~~~~f~~~~i~Vd~i-Reii~~~~~~~~~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~ll 98 (206)
T PRK08485 20 LINEFGKKNLRFFIKEEFKIEDA-KEVIAEAYIAESEEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLL 98 (206)
T ss_pred HHHhcCCCceEEECCCCCCHHHH-HHHHHHHhhCCCCcEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 33333444466666655555544 44444332 12 566889999999999999999999999999999999999999
Q ss_pred HHHhcccce-------------eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281 105 PAIRSRCLC-------------IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165 (287)
Q Consensus 105 ~~l~sr~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~ 165 (287)
++++|||+. +.+++++.+++.+.+.. ++++++...+++.+.++.++.|.+|.++...++.
T Consensus 99 pTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~ 171 (206)
T PRK08485 99 PTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE 171 (206)
T ss_pred hHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 999999985 67889999999999998 7888887788889999999999998887665543
No 476
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.1e-15 Score=144.48 Aligned_cols=190 Identities=14% Similarity=0.081 Sum_probs=112.8
Q ss_pred cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC---CHHHHHHHHHHHHhccCCc
Q psy2281 17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL---TREAQQALRRTMEKYITTC 91 (287)
Q Consensus 17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l---~~~~~~~l~~~i~~~~~~~ 91 (287)
+|...+++.++..+.+|+. ++|+||||||||||+++|++...++ .|.+++...+ ...........++++.+..
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~--v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~ 88 (638)
T PRK10636 11 RGVRVLLDNATATINPGQK--VGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD 88 (638)
T ss_pred eCCceeecCcEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhh
Confidence 3444456667777789999 9999999999999999999987655 5555542110 0000000000111111100
Q ss_pred EEEEEe-------CCCCC--CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----
Q psy2281 92 RLILCA-------NSMSQ--VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR----- 157 (287)
Q Consensus 92 ~~i~~~-------~~~~~--l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~----- 157 (287)
..+... ..... ....+..+ +...+..+....+..+++..|+. .+...+.+..+|+|+.+|
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 89 REYRQLEAQLHDANERNDGHAIATIHGK-----LDAIDAWTIRSRAASLLHGLGFS-NEQLERPVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHH-----HHhcCCcchHHHHHHHHHhCCCC-chhhcCchhhcCHHHHHHHHHHH
Confidence 000000 00000 00001100 11111123445667778877873 134566788999999888
Q ss_pred HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281 158 AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL 214 (287)
Q Consensus 158 al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~ 214 (287)
++...|.++++|||++.+|......+.+.+.++... |+++|+...+..++++++.+-
T Consensus 163 aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 163 ALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred HHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 666678999999999999988877666666554222 779999999999999887553
No 477
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.33 E-value=1.4e-13 Score=121.43 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+++.++..+..|+. +.++||||+|||||+|.+.+.-.+. .|.+|++|.-. =.++.|-+.++|.+|+..++. .|
T Consensus 350 pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q-Wd~e~lG~hiGYLPQdVeLF~-GT 425 (580)
T COG4618 350 PILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ-WDREQLGRHIGYLPQDVELFD-GT 425 (580)
T ss_pred cceecceeEecCCce--EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc-CCHHHhccccCcCcccceecC-Cc
Confidence 456677777889999 9999999999999999999987765 89999987422 225667788999999887655 35
Q ss_pred CCCCCcHHHhcccceeecC-CCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 99 SMSQVIPAIRSRCLCIRIP-APTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
..+||.. |. ..+.+.+.+..+.. .-..--.++...-+.=..+|+|+.|| |+--.|.++.
T Consensus 426 IaeNIaR----------f~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 426 IAENIAR----------FGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred HHHHHHh----------ccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 6666532 55 44554444433221 10100001111111122488898887 7778899999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||-+.+|......+.+.|.++.+. ++++|.+..+.. .|++..+
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~-~Dkilvl 544 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS-VDKILVL 544 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh-cceeeee
Confidence 99999999998888888888887766 778988876654 5666533
No 478
>PRK07914 hypothetical protein; Reviewed
Probab=99.33 E-value=1.9e-09 Score=94.10 Aligned_cols=251 Identities=9% Similarity=0.053 Sum_probs=157.9
Q ss_pred HHHHHHHHHhc--C--CCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281 22 QANHLRNLLKE--G--DFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL 95 (287)
Q Consensus 22 ~~~~l~~~~~~--g--~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~ 95 (287)
..+.+...+.. + ++....+.|..-.. ..+..+..--++++ +|++++.........+.+..+++.+++.+.+++
T Consensus 21 ~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~~i~~~~t~plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil 99 (320)
T PRK07914 21 AVAAVLRSARQRAGTADVPVSRMRAGDVST-YELAELLSPSLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVV 99 (320)
T ss_pred HHHHHHHHHhcCcCCCCCceEEeccccCCH-HHHHHhcCCCCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEE
Confidence 34555554432 3 22226677754333 33433322222333 888998765555556778888998888788877
Q ss_pred EeCCCC---CCcHHHhccc-ceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc-C
Q psy2281 96 CANSMS---QVIPAIRSRC-LCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-Q 169 (287)
Q Consensus 96 ~~~~~~---~l~~~l~sr~-~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~-d 169 (287)
+.+... ++...++... .++.+.++ +..++..|+...++..|+++++++.+.+++..|||+..+-+.+++++.+ +
T Consensus 100 ~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~ 179 (320)
T PRK07914 100 VHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTG 179 (320)
T ss_pred EecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC
Confidence 654332 2334566554 47888888 9999999999999999999999999999999999999999999998764 3
Q ss_pred CCccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHH------------------H---HHHHh-cCCCHHHHHH
Q psy2281 170 YPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTR------------------L---YELLV-HSIPVNVLFK 225 (287)
Q Consensus 170 ep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~------------------~---~~l~~-~~~~~~~i~~ 225 (287)
++++..+ ..........++++.+.+.... ...+..+.++ + +.+.. .| ++..+.+
T Consensus 180 ~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~-~~~A~~~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~-~~~~i~~ 257 (320)
T PRK07914 180 GAVDAAAVRRYHSGKAEVKGFDIADKAVAGD-VAGAAEALRWAMMRGEPHVVLADALAEAVHTIARVGPLSG-DPYRLAG 257 (320)
T ss_pred CCcCHHHHHHHcCCCeechHHHHHHHHHCCC-HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 4444433 1122223334555555543331 1111111111 1 11111 22 4555544
Q ss_pred H--HHHHHH-------HhCChHHHHHHHHHHHHHhhHHhcC-CChHHHHHHHHHHHHHHH
Q psy2281 226 Y--LLEGLL-------ANCDSDLKSKSIEMAAMFEHRIHKG-SKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 226 ~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~~~l~~~i~~~~~~~ 275 (287)
. ++++.. +.++.....+++..+.+.|..++.| .++.+.||.++.+++...
T Consensus 258 ~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~~~~ 317 (320)
T PRK07914 258 ELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAVRRVAELV 317 (320)
T ss_pred HcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Confidence 2 122222 2577788899999999999999976 566778999999987743
No 479
>KOG0734|consensus
Probab=99.33 E-value=1.8e-11 Score=108.71 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=104.6
Q ss_pred CCCCCccCcHHHHHHHHHHH-----------hcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLL-----------KEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~-----------~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
.+|+++.|-++++..|..++ -.|+.|. ++|+||||+|||.|+|+++++...+
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv 380 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV 380 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc
Confidence 46899999888888888777 2477777 9999999999999999999987654
Q ss_pred ------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccCCc-EEEEE-eCCCCCCcHHHhc--
Q psy2281 63 ------------------VIILNETDHLTRE-----------AQQALRRTMEKYITTC-RLILC-ANSMSQVIPAIRS-- 109 (287)
Q Consensus 63 ------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~~~-~~i~~-~~~~~~l~~~l~s-- 109 (287)
+|||||+|.+... ..+.|+--|+-..+|- .+++. +|-++.+++++.+
T Consensus 381 GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPG 460 (752)
T KOG0734|consen 381 GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPG 460 (752)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCC
Confidence 9999999986421 2234444455555554 33443 4445678887765
Q ss_pred cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHH----HcCCcHHHHHHHHHH
Q psy2281 110 RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQ----QSDRNLRRAILMCEA 164 (287)
Q Consensus 110 r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~----~s~G~~r~al~~l~~ 164 (287)
|| ..+..+.|+-.-..++++..+.+.-+ ++++ ...|++ .+|.|+...+|...-
T Consensus 461 RFD~~v~Vp~PDv~GR~eIL~~yl~ki~~--~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 461 RFDRHVTVPLPDVRGRTEILKLYLSKIPL--DEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred ccceeEecCCCCcccHHHHHHHHHhcCCc--ccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 55 34778888888888888888776443 3332 333443 455566666555543
No 480
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2e-11 Score=112.07 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=98.4
Q ss_pred CccCcHHHHHHHHHHH--------hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------
Q psy2281 15 KLDFHCKQANHLRNLL--------KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------ 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~--------~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------ 62 (287)
+-+|-+++++.+-..+ .+|.+ +||+||||+|||+|++.||+.+.-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPI--LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcE--EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccc
Confidence 3456666777666665 13333 9999999999999999999988533
Q ss_pred ------------------EEEEeCCCCCCHH----HHHHHHHH-------------HHhcc--CCcEEEEEeCCCCCCcH
Q psy2281 63 ------------------VIILNETDHLTRE----AQQALRRT-------------MEKYI--TTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 ------------------~i~ide~d~l~~~----~~~~l~~~-------------i~~~~--~~~~~i~~~~~~~~l~~ 105 (287)
++++||+|.++.+ ...+|+.. ++.+. ++..|+.++|..+.++.
T Consensus 402 amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~ 481 (782)
T COG0466 402 AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA 481 (782)
T ss_pred cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCCh
Confidence 9999999998632 23444443 33222 23456777777888999
Q ss_pred HHhcccceeecCCCCHHHHHHHHHHH-----HHHhCC-----CCCHHHHHHHHHHc
Q psy2281 106 AIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGL-----TIPPEFALRLAQQS 151 (287)
Q Consensus 106 ~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~-----~~~~~~~~~l~~~s 151 (287)
|++.|..++++.++++++-.++.++. ++..|+ .++++++..+.+..
T Consensus 482 PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 482 PLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred HHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 99999999999999999988887764 344444 57888888877643
No 481
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.32 E-value=1.9e-14 Score=110.85 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|+. +++.||||+|||||++++++...+. .|.+|+. . ...++
T Consensus 17 ~~~~~~~~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~-------~i~~~------- 68 (144)
T cd03221 17 KDISLTINPGDR--IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------V-------KIGYF------- 68 (144)
T ss_pred EeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------E-------EEEEE-------
Confidence 344445578888 9999999999999999999987654 5666651 0 00000
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~ 181 (287)
+. ++....+++. +-+|+...+.++++|||++++|.....
T Consensus 69 --------------~~---------------------lS~G~~~rv~------laral~~~p~illlDEP~~~LD~~~~~ 107 (144)
T cd03221 69 --------------EQ---------------------LSGGEKMRLA------LAKLLLENPNLLLLDEPTNHLDLESIE 107 (144)
T ss_pred --------------cc---------------------CCHHHHHHHH------HHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 00 1333333333 334788888999999999999988888
Q ss_pred cHHHHHHHHHHH-HHhccChhHHHHHHHHHHH
Q psy2281 182 DWKIYIRDTAKL-IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 182 ~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~ 212 (287)
.+.+.+.++... ++++|+.+.+...+++++.
T Consensus 108 ~l~~~l~~~~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 108 ALEEALKEYPGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 777777765322 6789999888877776543
No 482
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.32 E-value=1.2e-13 Score=106.83 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEe
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCA 97 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~ 97 (287)
+++.++..++.|.. +.+.|.||+|||||++.+++.+.|. -|.+++-.....+.+ .-.+.+..++|++. +-+-.
T Consensus 28 AV~~vSFtL~~~QT--laiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~-~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 28 AVKPVSFTLREGQT--LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS-FRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred cccceEEEecCCcE--EEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH-hhhhheeeeecCCccccChhh
Confidence 34455555577888 9999999999999999999998876 677777654443322 11233444444331 11111
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+...-+..|++ ....++.++..+.+.+-++..|+- ++-+.-++.-++.|+.+| |+...|++++.||..
T Consensus 105 ~iGqiLd~PL~------l~T~~~~~~R~~~i~~TL~~VGL~-Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl 177 (267)
T COG4167 105 RIGQILDFPLR------LNTDLEPEQRRKQIFETLRMVGLL-PDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL 177 (267)
T ss_pred hhhhHhcchhh------hcccCChHHHHHHHHHHHHHhccC-ccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence 11122444444 134567888889999999999984 666667777888888877 777888999999999
Q ss_pred ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.++|...+..+.++.-++.+. +.++++...++.+.|.+..+
T Consensus 178 ~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM 223 (267)
T COG4167 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVM 223 (267)
T ss_pred hhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEE
Confidence 999988777777888888776 66777888888888887633
No 483
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.32 E-value=5.9e-09 Score=92.00 Aligned_cols=239 Identities=13% Similarity=0.111 Sum_probs=152.7
Q ss_pred CCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------------------EEEEeCCCCCCHHHH
Q psy2281 34 DFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------------------VIILNETDHLTREAQ 77 (287)
Q Consensus 34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------~i~ide~d~l~~~~~ 77 (287)
..|.++|+|+........++.+.+...+. +|++.+.+ ....
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~~~~~~~~~~~t~slF~~~rlViv~~~~---~~~~ 95 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDADPARLEDEANAISLFGGRRLIWVRAGS---KNLA 95 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhcCHHHHHHHHhCCCCCCCceEEEEECCc---hhHH
Confidence 44448888888887777777776554211 66666433 2334
Q ss_pred HHHHHHHHhccCCcEEEEEeCCCCC---CcHHHh--cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q psy2281 78 QALRRTMEKYITTCRLILCANSMSQ---VIPAIR--SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSD 152 (287)
Q Consensus 78 ~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~--sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~ 152 (287)
+.|..++..+++++.+++.+...+. +...+. .....+.+.+++..++..|+.+.++..|+.+++++.+.+++.++
T Consensus 96 ~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g 175 (343)
T PRK06585 96 AALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLG 175 (343)
T ss_pred HHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC
Confidence 5677778887777777765433221 222221 12345778889999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhhcCC---Cccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHH-----------------HHH
Q psy2281 153 RNLRRAILMCEASKVQQY---PFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVR-----------------TRL 210 (287)
Q Consensus 153 G~~r~al~~l~~~~~~de---p~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~-----------------~~~ 210 (287)
||++.+.+.++++.++.. +++..| ..........++++.+.++..+....+..+. ..+
T Consensus 176 ~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~ 255 (343)
T PRK06585 176 GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAEGTAPVLILRAALRHF 255 (343)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999998743 344433 2222223344555655544432211111111 111
Q ss_pred H------HHHhcCCCHHHHHHHH-----------HHHHHHhCChHHHHHHHHHHHHHhhHHhcCCCh-HHHHHHHHHHHH
Q psy2281 211 Y------ELLVHSIPVNVLFKYL-----------LEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP-IFHIEAYVASFM 272 (287)
Q Consensus 211 ~------~l~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~~l~~~i~~~~ 272 (287)
. .+...|.+.+.+.... +....+.++.....+++..+.+.+..++.|..+ .+-||.++.+++
T Consensus 256 r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~le~~i~~~~ 335 (343)
T PRK06585 256 QRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAELDCRRNPALADAIARRVLLSIA 335 (343)
T ss_pred HHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1 1123455555444322 111223577778889999999999999987655 557899998877
Q ss_pred HHH
Q psy2281 273 AMY 275 (287)
Q Consensus 273 ~~~ 275 (287)
...
T Consensus 336 ~~~ 338 (343)
T PRK06585 336 VRA 338 (343)
T ss_pred HHH
Confidence 643
No 484
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.32 E-value=5.3e-14 Score=143.20 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEe-CCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILN-ETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~id-e~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
+.+.++..+++|+. +.|.|||||||||++++|++.+.+. .|.+| +.+ +..-....+++.+.+++|++.++. .+
T Consensus 400 vL~~isl~i~~Ge~--vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~-i~~~~~~~lr~~Ig~V~Q~~~LF~-~T 475 (1466)
T PTZ00265 400 IYKDLNFTLTEGKT--YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN-LKDINLKWWRSKIGVVSQDPLLFS-NS 475 (1466)
T ss_pred eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc-hhhCCHHHHHHhccEecccccchh-cc
Confidence 56666667789999 9999999999999999999998766 67774 444 222224557888999999876554 46
Q ss_pred CCCCCcHHHhc-c-----------------------------c--------------ceeec----CCCCHHHHHHHHHH
Q psy2281 99 SMSQVIPAIRS-R-----------------------------C--------------LCIRI----PAPTHEEIVSVLTN 130 (287)
Q Consensus 99 ~~~~l~~~l~s-r-----------------------------~--------------~~~~~----~~~~~~~~~~~l~~ 130 (287)
..+|+..+... + | ..+.. ...++++ +.+
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----v~~ 551 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSE----VVD 551 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHH----HHH
Confidence 66666543210 0 0 00000 0122233 334
Q ss_pred HHHHhCCC-----C----CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH--H-
Q psy2281 131 ICKKEGLT-----I----PPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK--L- 193 (287)
Q Consensus 131 ~~~~~~~~-----~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~--~- 193 (287)
.++..++. + +...-+....+|+|+.|| |+...|+++++|||++++|......+.+.+.++.+ .
T Consensus 552 a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~ 631 (1466)
T PTZ00265 552 VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENR 631 (1466)
T ss_pred HHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCC
Confidence 44444441 0 111123345689998888 78888999999999999999999888888988864 1
Q ss_pred --HHhccChhHHHHHHHHHHHH
Q psy2281 194 --IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 194 --i~~~~~~~~~~~~~~~~~~l 213 (287)
|+++|+...+ +.+|+++.+
T Consensus 632 TvIiIsHrls~i-~~aD~Iivl 652 (1466)
T PTZ00265 632 ITIIIAHRLSTI-RYANTIFVL 652 (1466)
T ss_pred EEEEEeCCHHHH-HhCCEEEEE
Confidence 7899999877 467777655
No 485
>KOG0056|consensus
Probab=99.32 E-value=9.5e-13 Score=115.78 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
.+.+.++..+..|+. +.++||+|+||||++|.+.+..... .|.||+.| +..-.+..||+.++-+||++.++-- +
T Consensus 552 ~vl~disF~v~pGkt--vAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd-Irnvt~~SLRs~IGVVPQDtvLFNd-T 627 (790)
T KOG0056|consen 552 PVLSDISFTVQPGKT--VALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD-IRNVTQSSLRSSIGVVPQDTVLFND-T 627 (790)
T ss_pred ceeecceEEecCCcE--EEEECCCCCchhHHHHHHHHHhhccCceEEEcCch-HHHHHHHHHHHhcCcccCcceeecc-e
Confidence 345666666788888 9999999999999999999987644 89999988 4455688999999999999876543 2
Q ss_pred CCCCCcHHHhcccceeecCCC--CHHHHHHHHHHHHHHhC-CCCCHHHHH----HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAP--THEEIVSVLTNICKKEG-LTIPPEFAL----RLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~----~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
...|+. +.+| +.+++.+..+..--.+. +.+++.-.. +=.++|||+.|| ++...|.++
T Consensus 628 I~yNIr-----------yak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 628 ILYNIR-----------YAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred eeehee-----------ecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 334432 3333 45565554443221111 122333333 334589999888 566678899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLE 205 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~ 205 (287)
++||.++++|..+...+...+.++... |++.|....+..
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn 738 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN 738 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec
Confidence 999999999988887777777777654 666666555443
No 486
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.31 E-value=7.4e-10 Score=95.98 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=148.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH-hCCC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHh--
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE-LYGP--VIILNETDHLTR-EAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIR-- 108 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~-~~~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~-- 108 (287)
+.+.|. ......+...+... +.++ +|++++++.+.. ...+.|...++.++.+..+++.++..+. +...+.
T Consensus 22 ~~~~~~-e~~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~ 100 (302)
T TIGR01128 22 FRIDGE-EFDWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKAL 100 (302)
T ss_pred eeeccC-CCCHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHh
Confidence 566666 45555554443322 2222 999999998763 4567888899998888777777664432 222333
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCcccccCc--cCccHH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQIDQQI--VEPDWK 184 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~d~~--~~~~~~ 184 (287)
++|.++.|.+++..++..++...+++.|+.+++++.+++++.++||++.+.+.+++++++ +++++..+.. ......
T Consensus 101 ~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~ 180 (302)
T TIGR01128 101 KNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSAR 180 (302)
T ss_pred cCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhc
Confidence 489999999999999999999999999999999999999999999999999999999987 4444332210 000001
Q ss_pred HHHHHHHHHHHhccChhHH-----------------HHHHHHH---H---HHHhcCCCHHHHHHHH--HHH-------HH
Q psy2281 185 IYIRDTAKLIISEQSPKKL-----------------LEVRTRL---Y---ELLVHSIPVNVLFKYL--LEG-------LL 232 (287)
Q Consensus 185 ~~i~~l~~~i~~~~~~~~~-----------------~~~~~~~---~---~l~~~~~~~~~i~~~~--~~~-------~~ 232 (287)
..++++.+.++.......+ ..+...+ + .+...|.+++.+...+ +++ ..
T Consensus 181 ~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 260 (302)
T TIGR01128 181 FNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKAL 260 (302)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123333333222111111 1111111 1 1123444554444321 111 12
Q ss_pred HhCChHHHHHHHHHHHHHhhHHhc--CCChHHHHHHHHHHH
Q psy2281 233 ANCDSDLKSKSIEMAAMFEHRIHK--GSKPIFHIEAYVASF 271 (287)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~~l~~~i~~~ 271 (287)
+.++.+....++..+.+.+..++. +.++.+.||.++.++
T Consensus 261 ~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~ 301 (302)
T TIGR01128 261 RRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKL 301 (302)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHh
Confidence 256677788899999999999993 566677899998875
No 487
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.1e-13 Score=108.33 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
..++..+.+|+. ++|.||||+||||+++++++.+.+. .+.+++.+..... .....+.+.+.++
T Consensus 16 ~~~~~~i~~g~~--~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~q------------ 80 (157)
T cd00267 16 DNVSLTLKAGEI--VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEELRRRIGYVPQ------------ 80 (157)
T ss_pred eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-HHHHHhceEEEee------------
Confidence 344444567877 9999999999999999999987644 5667764321100 0111111221111
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
+|+|+.|+ ++...+.++++|||++++|
T Consensus 81 ------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD 112 (157)
T cd00267 81 ------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112 (157)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 66666666 6666788999999999999
Q ss_pred CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
......+.+.+.++.+. ++++|+.+.+...+++++
T Consensus 113 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~ 151 (157)
T cd00267 113 PASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI 151 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 88888888888877653 678899988888766554
No 488
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=6.3e-11 Score=115.30 Aligned_cols=160 Identities=18% Similarity=0.244 Sum_probs=118.2
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C-------------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P------------- 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~------------- 62 (287)
++-+...++.++|....++.+..++.....+|++|+||||+|||++++.++..+.. .
T Consensus 171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~ 250 (821)
T CHL00095 171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGT 250 (821)
T ss_pred HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccC
Confidence 34456788999999999998988887767777999999999999999999887631 0
Q ss_pred -----------------------EEEEeCCCCCCH--------HHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHH
Q psy2281 63 -----------------------VIILNETDHLTR--------EAQQALRRTMEKYITTCRLILCANSMS-----QVIPA 106 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~--------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~ 106 (287)
++||||+|.+.. +..+.|...+.. ....+|.++|..+ ...++
T Consensus 251 ~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~a 328 (821)
T CHL00095 251 KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPA 328 (821)
T ss_pred CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHH
Confidence 889999986542 123444444442 2345566555443 25688
Q ss_pred HhcccceeecCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHhh
Q psy2281 107 IRSRCLCIRIPAPTHEEIVSVLTNICK----KEGLTIPPEFALRLAQQSDRNLR------RAILMCEASKV 167 (287)
Q Consensus 107 l~sr~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~G~~r------~al~~l~~~~~ 167 (287)
+.+||..+.+..++.++...+++.+.. ..++.++++++..++++|.|-+. +|+..++..+.
T Consensus 329 L~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 329 LERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 999999999999999888887776543 24667899999999999987443 48877776553
No 489
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.30 E-value=1.3e-11 Score=93.42 Aligned_cols=79 Identities=30% Similarity=0.387 Sum_probs=64.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------EEEEeCCCCCCHHH------
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP-----------------------------------VIILNETDHLTREA------ 76 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------~i~ide~d~l~~~~------ 76 (287)
++|+|||||||||+++.+++.+..+ ++++||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 5899999999999999999987543 99999999987664
Q ss_pred -----HHHHHHHHHhccCC---cEEEEEeCCCCCCcHHHh-cccc-eeec
Q psy2281 77 -----QQALRRTMEKYITT---CRLILCANSMSQVIPAIR-SRCL-CIRI 116 (287)
Q Consensus 77 -----~~~l~~~i~~~~~~---~~~i~~~~~~~~l~~~l~-sr~~-~~~~ 116 (287)
.+.+...++...+. ..++.+++..+.+.+++. +||. .+.+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 56777888877653 577888888889999999 8885 3444
No 490
>KOG0733|consensus
Probab=99.30 E-value=7.6e-11 Score=106.31 Aligned_cols=147 Identities=21% Similarity=0.257 Sum_probs=98.7
Q ss_pred CCCCCccCcHHHHHHHHHHHh-----------cCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLK-----------EGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~-----------~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
.+++++.+..++...|+..+. =|- .|. ++++||||||||-|++++|++....
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 367788888888888877761 132 233 9999999999999999999987644
Q ss_pred -------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccC-CcEEEE-EeCCCCCCcHHHhc-
Q psy2281 63 -------------------VIILNETDHLTRE-----------AQQALRRTMEKYIT-TCRLIL-CANSMSQVIPAIRS- 109 (287)
Q Consensus 63 -------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~-~~~~i~-~~~~~~~l~~~l~s- 109 (287)
+||+||+|.+.+. ..+.|+.-|+-..+ ..++++ .+|.++.+.+++..
T Consensus 588 ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRP 667 (802)
T KOG0733|consen 588 ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRP 667 (802)
T ss_pred hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCC
Confidence 9999999987532 24455555555532 234444 45556678888776
Q ss_pred -cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHH------HcCCcHHH
Q psy2281 110 -RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQ------QSDRNLRR 157 (287)
Q Consensus 110 -r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~------~s~G~~r~ 157 (287)
|+ ..+....|+.++..++++.+.+..+..+++++ ++.++. ++|.|+.-
T Consensus 668 GRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa 724 (802)
T KOG0733|consen 668 GRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA 724 (802)
T ss_pred CccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH
Confidence 44 24556678889999999998885444444332 344443 45556544
No 491
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=6.1e-11 Score=115.41 Aligned_cols=137 Identities=18% Similarity=0.302 Sum_probs=104.7
Q ss_pred CCccCcHHHHHHHHHHHhc-------CCCC--cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKE-------GDFP--HLLFYGPSGAGKKTRIMALLKELYGP---------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~-------g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------- 62 (287)
+.++||+.++..+...+.. ...| .++|+||+|+|||+++++|+..+++.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 4578999998888777732 1223 28999999999999999999987531
Q ss_pred -------------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCCC----
Q psy2281 63 -------------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMSQ---- 102 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~~---- 102 (287)
+|++||+|.++++.++.|++.++.- +.++.+|+++|....
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~ 668 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence 8999999999999999999998862 456677777664311
Q ss_pred ---------------------------------CcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh-------C--CCC
Q psy2281 103 ---------------------------------VIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE-------G--LTI 139 (287)
Q Consensus 103 ---------------------------------l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~-------~--~~~ 139 (287)
+.|.+.+|+ .++.|.+++.+++.+++...+... | +.+
T Consensus 669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~ 748 (821)
T CHL00095 669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEV 748 (821)
T ss_pred hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 224578888 689999999999999887766542 2 456
Q ss_pred CHHHHHHHHHH
Q psy2281 140 PPEFALRLAQQ 150 (287)
Q Consensus 140 ~~~~~~~l~~~ 150 (287)
++++.+++++.
T Consensus 749 ~~~~~~~La~~ 759 (821)
T CHL00095 749 TERIKTLLIEE 759 (821)
T ss_pred CHHHHHHHHHh
Confidence 78888887764
No 492
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.29 E-value=1.5e-10 Score=98.15 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------------------
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------------------------------------- 61 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------------------------------------- 61 (287)
.+.+.+...+..|.. ++|.||+|||||+++++++..+..
T Consensus 9 ~l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~ 86 (262)
T TIGR02640 9 RVTSRALRYLKSGYP--VHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKL 86 (262)
T ss_pred HHHHHHHHHHhcCCe--EEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhh
Confidence 345566666677766 999999999999999999864321
Q ss_pred --------------------CEEEEeCCCCCCHHHHHHHHHHHHhc----------------cCCcEEEEEeCCCC----
Q psy2281 62 --------------------PVIILNETDHLTREAQQALRRTMEKY----------------ITTCRLILCANSMS---- 101 (287)
Q Consensus 62 --------------------~~i~ide~d~l~~~~~~~l~~~i~~~----------------~~~~~~i~~~~~~~---- 101 (287)
.++++||++.++++.++.|+..++.- .++.++|.++|...
T Consensus 87 ~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 87 EDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred hcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 17999999999999999999988641 12456677766542
Q ss_pred -CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2281 102 -QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ 149 (287)
Q Consensus 102 -~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 149 (287)
.+.+++.+||..+.+..|+.++..+++.... ++ ++...+.+++
T Consensus 167 ~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---~~--~~~~~~~iv~ 210 (262)
T TIGR02640 167 HETQDALLDRLITIFMDYPDIDTETAILRAKT---DV--AEDSAATIVR 210 (262)
T ss_pred ecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---CC--CHHHHHHHHH
Confidence 4678899999988898898888888877642 33 5666555554
No 493
>PLN03140 ABC transporter G family member; Provisional
Probab=99.29 E-value=4.7e-14 Score=143.09 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~ 97 (287)
++.++..+++|+. ++|.||||+|||||+++|++.+.+. .|.+++.+. ... ..++.+.+++|+..++...
T Consensus 181 L~~vs~~i~~Ge~--~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~-~~~---~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 181 LKDASGIIKPSRM--TLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL-NEF---VPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ccCCeEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEec-hhh---cccceeEEecccccCCCcC
Confidence 3444444467888 9999999999999999999987643 677777552 111 1134577777776666666
Q ss_pred CCCCCCcHHHhcccc--eeec-CCCCHH----------HH--------------HHHHHHHHHHhCCCCCHH---HHHHH
Q psy2281 98 NSMSQVIPAIRSRCL--CIRI-PAPTHE----------EI--------------VSVLTNICKKEGLTIPPE---FALRL 147 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~--~~~~-~~~~~~----------~~--------------~~~l~~~~~~~~~~~~~~---~~~~l 147 (287)
|+.+++..+.+-|.. .... ...+.+ ++ ......+++..|+....+ ..+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 777777665432210 0000 011111 11 123455677777731100 13345
Q ss_pred HHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccCh-hHHHHHHHHHHHH
Q psy2281 148 AQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSP-KKLLEVRTRLYEL 213 (287)
Q Consensus 148 ~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~-~~~~~~~~~~~~l 213 (287)
..+|||+.|| ++...++++++|||++++|......+.+.++++.+. ++++|++ ..+..++|+++.|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence 6799999998 677778999999999999999999999999998763 6677875 5777888887643
No 494
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.29 E-value=6.7e-13 Score=121.55 Aligned_cols=186 Identities=17% Similarity=0.096 Sum_probs=113.5
Q ss_pred CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEe----------CCCCCCH-HH--
Q psy2281 12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILN----------ETDHLTR-EA-- 76 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~id----------e~d~l~~-~~-- 76 (287)
++...+|...+.+.++..+..|+. +.|+|+||+|||||+++|++...+. .|..+ +.+.-.. ..
T Consensus 8 ~ls~~~g~~~l~~~~~l~~~~G~r--iGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~ 85 (530)
T COG0488 8 NLSLAYGDRPLLENVSLTLNPGER--IGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLD 85 (530)
T ss_pred eeEEeeCCceeecCCcceeCCCCE--EEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHH
Confidence 334444556667777777888988 9999999999999999999998655 22222 1111100 00
Q ss_pred --------HHHHHHHHHhccC-CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q psy2281 77 --------QQALRRTMEKYIT-TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147 (287)
Q Consensus 77 --------~~~l~~~i~~~~~-~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 147 (287)
...+.+.++.... .... .......+..+ +...+.-+....+..++...|+ ++. .+.+
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-----~~~~~~~~~e~~~~~~L~gLg~--~~~-~~~~ 151 (530)
T COG0488 86 YVIEGFGELRELLAELEEAYALLADP------DDELLAELEAL-----LEELDGWTLEARAEEALLGLGF--PDE-DRPV 151 (530)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcccc------hhHHHHHHHHH-----HHhhcccchHHHHHHHHhcCCC--Ccc-cCch
Confidence 0111111111100 0000 11111112211 1112223344566666666666 555 7788
Q ss_pred HHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281 148 AQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 148 ~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l 213 (287)
.++|||+.+| |+...|.++++||||+.+|..+..-+++.+.+.... |+++||-..+..+|.+++++
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEe
Confidence 9999999888 666678999999999999977665444444443332 78999999999999999866
No 495
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.29 E-value=7.1e-09 Score=90.81 Aligned_cols=244 Identities=16% Similarity=0.188 Sum_probs=150.1
Q ss_pred HHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhC---------CC---------------------EEEEeCCCCCC
Q psy2281 25 HLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELY---------GP---------------------VIILNETDHLT 73 (287)
Q Consensus 25 ~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~---------~~---------------------~i~ide~d~l~ 73 (287)
.+...+++|++++ ++|+|..-.-....+..+..... .+ +|++.+.....
T Consensus 5 ~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~plF~~~rlViv~~~~~~~ 84 (328)
T PRK08487 5 ELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKTLYFDEYDFEQAKDFLSQSSLFGGKNLLIIKLDKKIP 84 (328)
T ss_pred HHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhhhchhhccHHHHHHHHhcccccCCceEEEEecccccC
Confidence 4555566676655 77778766666555555543321 00 77777765444
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHhcc--cceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2281 74 REAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIRSR--CLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA 148 (287)
Q Consensus 74 ~~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~sr--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 148 (287)
......|..+++.+++.+.+++.....+. +...+... ...+.|.+++..++..|+...+++.|+.+++++.+.++
T Consensus 85 ~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~ 164 (328)
T PRK08487 85 KKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLY 164 (328)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44556777788877655555543322221 11222222 34678888999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHH-
Q psy2281 149 QQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK- 225 (287)
Q Consensus 149 ~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~- 225 (287)
+..++|+..+.+.++++.++.++++..| ..........++++.+.++.... +..+ +..++..|.+|-.|+.
T Consensus 165 ~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~~---a~~~---l~~L~~~g~~pi~Il~~ 238 (328)
T PRK08487 165 FIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKKD---IKDD---LEKLLEEGFNEIALLNS 238 (328)
T ss_pred HHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCCc---HHHH---HHHHHHCCCCHHHHHHH
Confidence 9999999999999999999877665554 11122223345555555444321 1111 1111122222211111
Q ss_pred ---------------------------HH---------HHHHHHhCChHHHHHHHHHHHHHhhHHhcCCCh--HHHHHHH
Q psy2281 226 ---------------------------YL---------LEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP--IFHIEAY 267 (287)
Q Consensus 226 ---------------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~~l~~~ 267 (287)
.+ .....++++.....+++..+.++|..++.|..+ .+-++.+
T Consensus 239 L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~~~~~~~~~~~ 318 (328)
T PRK08487 239 LERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELELKTGQKIDKNLFLLST 318 (328)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 00 122223577778889999999999999998655 4455555
Q ss_pred HHHHHHH
Q psy2281 268 VASFMAM 274 (287)
Q Consensus 268 i~~~~~~ 274 (287)
+..+...
T Consensus 319 ~~~~~~~ 325 (328)
T PRK08487 319 LIKIQKI 325 (328)
T ss_pred HHHHHHH
Confidence 5555544
No 496
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.29 E-value=5.8e-11 Score=114.25 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=102.5
Q ss_pred CccCcHHHHHHHHHHHhcC-------CCC--cEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281 15 KLDFHCKQANHLRNLLKEG-------DFP--HLLFYGPSGAGKKTRIMALLKELYGP----------------------- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~g-------~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------- 62 (287)
.++||+.+++.+...+... ..| +++|+||+|+|||+++++++..+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 4788998888887777421 122 38999999999999999999887431
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCC---------
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMS--------- 101 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~--------- 101 (287)
+|++||++.++++.++.|++.++.- +.++.+|+++|...
T Consensus 535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~ 614 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIG 614 (731)
T ss_pred CCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCC
Confidence 9999999999999999999998753 23455677665431
Q ss_pred ----------------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281 102 ----------------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ 150 (287)
Q Consensus 102 ----------------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~ 150 (287)
.+.+.+.+|+ .++.|++++.+++.+++...++.. .+.+++++.+++++.
T Consensus 615 f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 615 FGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred cchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHh
Confidence 1456778888 478999999999999988876532 245577777777764
No 497
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.29 E-value=1.5e-13 Score=140.76 Aligned_cols=174 Identities=19% Similarity=0.201 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
.+++.++..+++|+. +.|+|++|+|||||+++|++..... -|.||+.|. ..-....+++.+..++|++.++ ..|.
T Consensus 1233 ~vL~~is~~I~~Gek--vaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di-~~i~~~~lR~~is~IpQdp~LF-~GTI 1308 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQR--VGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSW-NSVTLQTWRKAFGVIPQKVFIF-SGTF 1308 (1490)
T ss_pred ceeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEc-ccCCHHHHHhceEEEeCCCccC-ccCH
Confidence 356666777789999 9999999999999999999987522 889999873 3333567889999999988554 4677
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHH----HHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPEFALRL----AQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l----~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+.+ +...+++++.+.++.. ++ .+++.....+ ..+|+|+.|+ |+...+++
T Consensus 1309 R~NLdp----------~~~~tdeei~~aL~~~----~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1309 RKNLDP----------YEQWSDEEIWKVAEEV----GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred HHHhCc----------ccCCCHHHHHHHHHHC----CCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 788855 3345666666655542 32 0011111111 2478887777 66666788
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++||||+++|..+...+.+.+.+..+. |+++|....+.. +|+++.|
T Consensus 1375 LlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL 1424 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVI 1424 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEE
Confidence 9999999999998887777777766443 779999887776 6877644
No 498
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.29 E-value=4.1e-09 Score=92.87 Aligned_cols=211 Identities=17% Similarity=0.217 Sum_probs=130.9
Q ss_pred EEEEeCCCCCCHHH-HHHHHHHHH--hccCCc--EEEEEeCCCC---CC---cHHHhcccceeecCCCCHHHHHHHHHHH
Q psy2281 63 VIILNETDHLTREA-QQALRRTME--KYITTC--RLILCANSMS---QV---IPAIRSRCLCIRIPAPTHEEIVSVLTNI 131 (287)
Q Consensus 63 ~i~ide~d~l~~~~-~~~l~~~i~--~~~~~~--~~i~~~~~~~---~l---~~~l~sr~~~~~~~~~~~~~~~~~l~~~ 131 (287)
+|++++++.+.... ...+....+ .++++. .+++..+..+ .+ ...+.+++.++.+.+++..++..++...
T Consensus 79 lvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~ 158 (340)
T PRK05574 79 LVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQR 158 (340)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 88999998876542 222322233 233332 3333333222 23 5677788889999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC--CCcccccC--ccCccHHHHHHHHHHHHHhcc---------
Q psy2281 132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ--YPFQIDQQ--IVEPDWKIYIRDTAKLIISEQ--------- 198 (287)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d--ep~~~~d~--~~~~~~~~~i~~l~~~i~~~~--------- 198 (287)
++..|+.+++++.+++++.++||+..+.+.++++.++. .+++..+. .........++++.+.++...
T Consensus 159 ~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~l~ 238 (340)
T PRK05574 159 LKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRILD 238 (340)
T ss_pred HHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998764 33332220 000111112223333322221
Q ss_pred -------ChhH-HHHHHHHHH------HHHhcCCCHHHHHHH--HHH-------HHHHhCChHHHHHHHHHHHHHhhHHh
Q psy2281 199 -------SPKK-LLEVRTRLY------ELLVHSIPVNVLFKY--LLE-------GLLANCDSDLKSKSIEMAAMFEHRIH 255 (287)
Q Consensus 199 -------~~~~-~~~~~~~~~------~l~~~~~~~~~i~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (287)
++-. +..+...+. .+...|.+++.+.+. +++ ...+.++.....+++..+.+.+..++
T Consensus 239 ~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L~~~d~~iK 318 (340)
T PRK05574 239 GLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAETDYQIK 318 (340)
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 1101 111111111 112245555554431 111 12235777888899999999999999
Q ss_pred cCC--ChHHHHHHHHHHHHH
Q psy2281 256 KGS--KPIFHIEAYVASFMA 273 (287)
Q Consensus 256 ~g~--~~~~~l~~~i~~~~~ 273 (287)
.|. ++.+.+|.++.+++.
T Consensus 319 ~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 319 TGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred CCCCCCHHHHHHHHHHHhcc
Confidence 995 778889999988764
No 499
>PRK13409 putative ATPase RIL; Provisional
Probab=99.28 E-value=3.4e-13 Score=126.16 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEE-----------EeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VII-----------LNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~-----------ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
++..+. .+++|++ +.|.||||+||||++++|++.+.++ .|. +++.+ .+... ..+...
T Consensus 89 ~L~~l~-~i~~Gev--~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~-----l~~~~-~~~~~~- 158 (590)
T PRK13409 89 KLYGLP-IPKEGKV--TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTE-----LQNYF-KKLYNG- 158 (590)
T ss_pred eEecCC-cCCCCCE--EEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChH-----HHHHH-HHHhcc-
Confidence 445555 5678888 9999999999999999999987765 232 22211 11111 111100
Q ss_pred CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
...+.............+.... ... +...+....+.++++..++ +....+.+.++|+|+.|+ |+...+
T Consensus 159 -~~~~~~~~q~~~~~p~~~~~tv--~e~--l~~~~~~~~~~~~l~~l~l--~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 159 -EIKVVHKPQYVDLIPKVFKGKV--REL--LKKVDERGKLDEVVERLGL--ENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred -CcceeecccchhhhhhhhcchH--HHH--HHhhhHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0000000000000000000000 000 0011233456677777777 555677888999999998 666668
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
.++++|||++.+|......+.+.+.++.+. ++++|+...+..++|++..+
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999988888888887533 77999999999999887544
No 500
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.1e-10 Score=102.75 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=113.0
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
+-|-|.. +.+.+.....+...+ ..+...+++++||+|+|||++++-+++++...
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3466644 556665555555444 44444449999999999999999999887422
Q ss_pred -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCC-c--EEEEEeCCC--
Q psy2281 63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITT-C--RLILCANSM-- 100 (287)
Q Consensus 63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~-~--~~i~~~~~~-- 100 (287)
+|++||+|.+....+..|...+...... . .++.++|..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 8999999998765444444443333222 2 344555544
Q ss_pred -CCCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHH---HHcCCcHHHHHHHHHHHhhcCC
Q psy2281 101 -SQVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKKE--GLTIPPEFALRLA---QQSDRNLRRAILMCEASKVQQY 170 (287)
Q Consensus 101 -~~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~---~~s~G~~r~al~~l~~~~~~de 170 (287)
+.+.+.++|++. .+.|++++.+++..++...++.. .-.+++++++.++ ...+||.|+|+..+....-..|
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 357788888874 47799999999999999887742 2245777777766 4678899999999988776544
Done!