Query psy2281
Match_columns 287
No_of_seqs 352 out of 3194
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 20:41:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 100.0 1.3E-41 4.5E-46 299.6 31.1 275 1-275 1-353 (354)
2 1sxj_C Activator 1 40 kDa subu 100.0 7.5E-38 2.6E-42 274.3 27.0 272 2-277 13-333 (340)
3 3u61_B DNA polymerase accessor 100.0 1.9E-36 6.5E-41 263.7 27.9 265 2-274 14-320 (324)
4 2chq_A Replication factor C sm 100.0 2.2E-34 7.5E-39 249.6 27.0 270 1-274 4-316 (319)
5 1iqp_A RFCS; clamp loader, ext 100.0 5.7E-34 2E-38 247.8 28.9 270 2-275 13-325 (327)
6 1sxj_D Activator 1 41 kDa subu 100.0 1.2E-33 4.2E-38 248.4 24.1 268 2-273 25-352 (353)
7 1sxj_B Activator 1 37 kDa subu 100.0 1.2E-31 4.3E-36 232.6 25.6 265 2-275 9-320 (323)
8 1jr3_A DNA polymerase III subu 100.0 2.4E-28 8.3E-33 216.2 33.1 268 2-273 4-358 (373)
9 3pvs_A Replication-associated 100.0 2.9E-30 1E-34 232.7 18.5 251 2-285 14-308 (447)
10 2gno_A DNA polymerase III, gam 99.9 5.3E-26 1.8E-30 195.2 20.7 239 18-273 1-296 (305)
11 2chg_A Replication factor C sm 99.9 5.6E-25 1.9E-29 180.2 19.3 169 1-169 4-211 (226)
12 1a5t_A Delta prime, HOLB; zinc 99.9 1.7E-23 5.7E-28 182.6 25.2 238 19-274 7-322 (334)
13 1sxj_A Activator 1 95 kDa subu 99.9 3.6E-24 1.2E-28 197.1 15.6 171 1-173 26-263 (516)
14 1njg_A DNA polymerase III subu 99.9 6.4E-23 2.2E-27 170.0 20.0 168 2-169 11-235 (250)
15 3pfi_A Holliday junction ATP-d 99.9 7.3E-21 2.5E-25 166.1 19.9 164 3-166 18-231 (338)
16 1jr3_D DNA polymerase III, del 99.9 1.6E-21 5.6E-26 170.7 14.2 242 26-273 9-333 (343)
17 1in4_A RUVB, holliday junction 99.9 1.6E-20 5.5E-25 163.7 19.7 164 4-167 15-228 (334)
18 1hqc_A RUVB; extended AAA-ATPa 99.8 8.8E-20 3E-24 158.2 20.0 167 3-169 1-218 (324)
19 3uk6_A RUVB-like 2; hexameric 99.8 3.8E-20 1.3E-24 163.3 17.6 164 4-168 33-309 (368)
20 3bos_A Putative DNA replicatio 99.8 1.8E-19 6.2E-24 149.2 16.5 166 3-168 16-223 (242)
21 3tui_C Methionine import ATP-b 99.8 3.3E-23 1.1E-27 180.3 -7.9 180 23-213 44-237 (366)
22 2c9o_A RUVB-like 1; hexameric 99.8 4.3E-19 1.5E-23 160.9 18.3 104 63-167 298-415 (456)
23 3rlf_A Maltose/maltodextrin im 99.8 1.1E-22 3.9E-27 178.1 -9.5 176 24-213 20-207 (381)
24 1b0u_A Histidine permease; ABC 99.8 9.1E-22 3.1E-26 165.4 -4.5 180 24-213 23-226 (262)
25 3gfo_A Cobalt import ATP-bindi 99.8 2.1E-22 7.3E-27 170.0 -9.5 180 23-213 24-217 (275)
26 3vfd_A Spastin; ATPase, microt 99.8 6.9E-18 2.4E-22 150.1 18.1 162 3-164 104-327 (389)
27 2z4s_A Chromosomal replication 99.8 2.7E-18 9.1E-23 154.8 15.1 161 8-168 98-312 (440)
28 2olj_A Amino acid ABC transpor 99.8 7E-22 2.4E-26 165.9 -8.7 180 24-213 41-232 (263)
29 3fvq_A Fe(3+) IONS import ATP- 99.8 8.4E-23 2.9E-27 177.7 -15.1 180 23-213 20-212 (359)
30 3b9p_A CG5977-PA, isoform A; A 99.8 1.2E-17 4E-22 143.2 17.1 161 2-162 9-232 (297)
31 1v43_A Sugar-binding transport 99.8 9.4E-22 3.2E-26 172.3 -8.7 176 24-213 28-215 (372)
32 3tif_A Uncharacterized ABC tra 99.8 2.3E-21 7.8E-26 160.5 -6.0 177 26-211 24-216 (235)
33 1z47_A CYSA, putative ABC-tran 99.8 5.2E-22 1.8E-26 172.8 -10.9 176 24-213 32-219 (355)
34 2it1_A 362AA long hypothetical 99.8 7.8E-22 2.7E-26 172.2 -10.6 187 25-225 21-223 (362)
35 4g1u_C Hemin import ATP-bindin 99.8 1.3E-21 4.6E-26 164.6 -8.9 177 23-213 27-221 (266)
36 2pcj_A ABC transporter, lipopr 99.8 1.9E-21 6.6E-26 159.8 -8.1 175 25-211 22-210 (224)
37 1g29_1 MALK, maltose transport 99.8 2E-21 6.7E-26 170.6 -9.3 178 25-213 21-213 (372)
38 2yyz_A Sugar ABC transporter, 99.8 7.2E-22 2.5E-26 172.3 -12.4 175 25-213 21-207 (359)
39 1oxx_K GLCV, glucose, ABC tran 99.7 1.9E-21 6.3E-26 169.7 -10.6 178 25-213 23-214 (353)
40 1vpl_A ABC transporter, ATP-bi 99.7 1.5E-21 5.3E-26 163.3 -11.1 176 25-213 33-219 (256)
41 2qp9_X Vacuolar protein sortin 99.7 8.8E-17 3E-21 141.1 18.2 151 3-153 40-251 (355)
42 1g6h_A High-affinity branched- 99.7 9.7E-22 3.3E-26 165.0 -12.9 186 24-213 24-226 (257)
43 3eie_A Vacuolar protein sortin 99.7 9E-17 3.1E-21 139.3 17.9 152 2-153 6-218 (322)
44 3syl_A Protein CBBX; photosynt 99.7 2E-17 6.9E-22 142.4 13.3 153 15-167 32-260 (309)
45 3d31_A Sulfate/molybdate ABC t 99.7 2.8E-21 9.6E-26 168.0 -11.3 171 26-213 19-201 (348)
46 1l8q_A Chromosomal replication 99.7 2.7E-16 9.2E-21 136.3 19.2 156 11-168 8-214 (324)
47 2r44_A Uncharacterized protein 99.7 7.8E-17 2.7E-21 140.2 14.5 148 2-151 15-239 (331)
48 3d8b_A Fidgetin-like protein 1 99.7 2.2E-16 7.4E-21 138.8 16.9 154 4-157 74-289 (357)
49 3pxg_A Negative regulator of g 99.7 8.9E-17 3E-21 146.0 14.7 158 3-166 169-382 (468)
50 4b4t_J 26S protease regulatory 99.7 1.3E-15 4.3E-20 133.8 20.5 156 6-162 140-365 (405)
51 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.1E-15 3.6E-20 132.4 19.6 150 5-154 3-214 (322)
52 1ji0_A ABC transporter; ATP bi 99.7 4.7E-21 1.6E-25 159.1 -14.3 177 25-213 24-212 (240)
53 1lv7_A FTSH; alpha/beta domain 99.7 3.2E-16 1.1E-20 131.4 14.7 163 3-166 1-229 (257)
54 2onk_A Molybdate/tungstate ABC 99.7 9.1E-21 3.1E-25 157.1 -13.5 166 31-213 23-200 (240)
55 1fnn_A CDC6P, cell division co 99.7 1.2E-15 4E-20 135.2 18.5 163 3-168 9-253 (389)
56 2yz2_A Putative ABC transporte 99.7 1.1E-20 3.7E-25 159.3 -13.9 173 25-213 25-211 (266)
57 2zan_A Vacuolar protein sortin 99.7 8.5E-16 2.9E-20 138.7 16.9 150 4-153 124-335 (444)
58 1sgw_A Putative ABC transporte 99.7 6.6E-21 2.3E-25 155.1 -15.1 166 26-211 28-204 (214)
59 2qby_B CDC6 homolog 3, cell di 99.7 6.9E-16 2.4E-20 136.6 15.8 164 3-170 12-253 (384)
60 2qz4_A Paraplegin; AAA+, SPG7, 99.7 6.2E-15 2.1E-19 123.7 20.8 145 10-154 2-213 (262)
61 2v1u_A Cell division control p 99.7 5.7E-16 2E-20 137.0 15.0 162 4-168 12-255 (387)
62 2qi9_C Vitamin B12 import ATP- 99.7 1E-19 3.4E-24 151.6 -8.9 168 29-213 22-206 (249)
63 3h4m_A Proteasome-activating n 99.7 1.4E-15 4.9E-20 129.3 16.6 162 5-167 8-239 (285)
64 1ofh_A ATP-dependent HSL prote 99.7 1.2E-15 4E-20 131.1 16.0 152 15-166 16-270 (310)
65 3te6_A Regulatory protein SIR3 99.7 8.2E-16 2.8E-20 131.8 14.1 145 24-170 34-287 (318)
66 2ihy_A ABC transporter, ATP-bi 99.7 3.1E-20 1.1E-24 157.2 -14.6 182 25-213 39-236 (279)
67 1g8p_A Magnesium-chelatase 38 99.7 2.9E-15 1E-19 131.0 16.1 162 6-167 16-300 (350)
68 4b4t_L 26S protease subunit RP 99.7 1.1E-14 3.6E-19 129.9 19.7 155 10-165 177-401 (437)
69 4b4t_I 26S protease regulatory 99.6 7.6E-15 2.6E-19 129.4 18.3 158 5-163 173-400 (437)
70 4b4t_H 26S protease regulatory 99.6 1.4E-14 4.8E-19 128.9 19.1 153 9-162 204-426 (467)
71 4fcw_A Chaperone protein CLPB; 99.6 1.9E-15 6.3E-20 130.1 12.8 153 14-166 17-275 (311)
72 4b4t_M 26S protease regulatory 99.6 4.7E-15 1.6E-19 132.0 15.2 155 6-161 173-397 (434)
73 2d2e_A SUFC protein; ABC-ATPas 99.6 1.3E-18 4.5E-23 145.3 -7.6 181 26-213 22-217 (250)
74 1jbk_A CLPB protein; beta barr 99.6 6.6E-16 2.3E-20 122.9 8.4 124 3-128 11-194 (195)
75 2nq2_C Hypothetical ABC transp 99.6 4.8E-19 1.7E-23 148.0 -10.6 168 25-213 23-202 (253)
76 3pxi_A Negative regulator of g 99.6 5.4E-15 1.8E-19 142.0 15.2 157 3-165 169-381 (758)
77 2zu0_C Probable ATP-dependent 99.6 1.6E-19 5.6E-24 152.1 -15.3 186 25-213 38-238 (267)
78 3nh6_A ATP-binding cassette SU 99.6 1.8E-18 6.1E-23 147.9 -9.7 169 25-213 72-261 (306)
79 4b4t_K 26S protease regulatory 99.6 3.9E-14 1.3E-18 126.0 16.9 152 10-162 168-390 (428)
80 3m6a_A ATP-dependent protease 99.6 6.6E-15 2.3E-19 135.9 12.4 144 15-158 82-304 (543)
81 1qvr_A CLPB protein; coiled co 99.6 4.6E-15 1.6E-19 144.1 11.2 161 3-165 159-388 (854)
82 2ff7_A Alpha-hemolysin translo 99.6 6.9E-18 2.4E-22 140.5 -7.9 169 25-213 27-216 (247)
83 3cf0_A Transitional endoplasmi 99.6 2.3E-14 7.9E-19 122.9 13.8 133 5-137 6-204 (301)
84 2qby_A CDC6 homolog 1, cell di 99.6 3.2E-14 1.1E-18 125.6 14.4 162 4-168 13-251 (386)
85 2p65_A Hypothetical protein PF 99.6 3E-15 1E-19 118.7 6.9 116 3-120 11-187 (187)
86 2ixe_A Antigen peptide transpo 99.6 1.8E-18 6E-23 146.0 -13.2 177 24-213 36-229 (271)
87 3b5x_A Lipid A export ATP-bind 99.6 2.5E-17 8.7E-22 153.5 -7.3 175 22-213 358-551 (582)
88 2ce7_A Cell division protein F 99.5 1.3E-13 4.5E-18 124.5 15.8 159 4-163 5-230 (476)
89 1um8_A ATP-dependent CLP prote 99.5 1.3E-13 4.4E-18 121.9 15.5 153 15-167 22-337 (376)
90 3k1j_A LON protease, ATP-depen 99.5 6.2E-14 2.1E-18 131.2 14.1 160 5-166 32-352 (604)
91 2bjv_A PSP operon transcriptio 99.5 3E-13 1E-17 113.7 16.8 157 12-168 4-239 (265)
92 3gd7_A Fusion complex of cysti 99.5 1.7E-17 5.9E-22 146.2 -10.4 170 22-213 36-226 (390)
93 2pjz_A Hypothetical protein ST 99.5 2E-18 6.9E-23 144.8 -15.9 164 27-213 25-199 (263)
94 2r62_A Cell division protease 99.5 3.6E-15 1.2E-19 125.7 3.7 147 6-153 3-216 (268)
95 1r6b_X CLPA protein; AAA+, N-t 99.5 6.6E-14 2.2E-18 134.6 12.5 149 3-153 175-387 (758)
96 3pxi_A Negative regulator of g 99.5 2.3E-13 7.7E-18 130.8 16.0 137 14-150 491-702 (758)
97 2ghi_A Transport protein; mult 99.5 4E-17 1.4E-21 137.0 -9.7 169 25-213 38-226 (260)
98 1ojl_A Transcriptional regulat 99.5 1.9E-12 6.6E-17 111.0 18.5 155 15-169 3-235 (304)
99 3hu3_A Transitional endoplasmi 99.5 1.5E-13 5.1E-18 125.0 11.4 150 7-157 197-409 (489)
100 1r6b_X CLPA protein; AAA+, N-t 99.5 4.3E-13 1.5E-17 128.9 15.1 138 14-151 458-694 (758)
101 1mv5_A LMRA, multidrug resista 99.5 2.5E-16 8.6E-21 130.9 -6.6 169 26-213 21-210 (243)
102 3qf4_B Uncharacterized ABC tra 99.5 1E-16 3.5E-21 149.8 -11.6 172 24-213 372-562 (598)
103 1ixz_A ATP-dependent metallopr 99.5 1.3E-12 4.5E-17 109.1 14.5 151 3-155 5-221 (254)
104 2yl4_A ATP-binding cassette SU 99.4 1.7E-16 5.9E-21 148.3 -10.8 172 25-213 362-554 (595)
105 3b60_A Lipid A export ATP-bind 99.4 6.6E-16 2.3E-20 144.0 -7.0 171 24-213 360-551 (582)
106 1d2n_A N-ethylmaleimide-sensit 99.4 6.1E-13 2.1E-17 112.3 11.4 126 37-167 66-247 (272)
107 2dhr_A FTSH; AAA+ protein, hex 99.4 3.7E-12 1.3E-16 115.7 15.8 159 4-165 22-247 (499)
108 4a82_A Cystic fibrosis transme 99.4 3E-16 1E-20 146.2 -11.5 170 24-213 358-548 (578)
109 3ozx_A RNAse L inhibitor; ATP 99.4 2.5E-16 8.6E-21 144.7 -13.4 156 31-213 292-459 (538)
110 1iy2_A ATP-dependent metallopr 99.4 1.3E-11 4.4E-16 104.5 16.6 146 8-155 34-245 (278)
111 1qvr_A CLPB protein; coiled co 99.4 1.4E-12 4.7E-17 126.8 11.5 152 14-165 558-815 (854)
112 2pze_A Cystic fibrosis transme 99.4 2.9E-16 9.8E-21 129.3 -12.3 155 25-213 26-202 (229)
113 3cf2_A TER ATPase, transitiona 99.4 1.6E-12 5.6E-17 123.6 9.6 142 11-153 201-405 (806)
114 3ec2_A DNA replication protein 99.4 2.9E-12 1E-16 101.3 9.6 96 5-102 1-145 (180)
115 3hws_A ATP-dependent CLP prote 99.4 6.3E-12 2.2E-16 110.5 12.5 135 16-150 17-300 (363)
116 3t15_A Ribulose bisphosphate c 99.3 2.9E-11 9.8E-16 103.1 15.9 117 38-156 39-221 (293)
117 3bk7_A ABC transporter ATP-bin 99.3 1E-15 3.4E-20 142.5 -12.9 154 31-213 380-545 (607)
118 3qf4_A ABC transporter, ATP-bi 99.3 2.4E-14 8.2E-19 133.4 -3.7 172 24-213 360-550 (587)
119 1yqt_A RNAse L inhibitor; ATP- 99.3 1.2E-15 3.9E-20 140.6 -14.2 154 31-213 310-475 (538)
120 3cf2_A TER ATPase, transitiona 99.3 2.7E-12 9.1E-17 122.2 8.4 150 11-161 474-693 (806)
121 3j16_B RLI1P; ribosome recycli 99.3 4E-14 1.4E-18 131.6 -5.1 172 30-213 100-294 (608)
122 1w5s_A Origin recognition comp 99.3 2E-11 7E-16 108.7 12.7 158 6-166 17-270 (412)
123 2bbs_A Cystic fibrosis transme 99.3 1.1E-15 3.6E-20 130.0 -15.1 148 31-213 62-231 (290)
124 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 5.8E-11 2E-15 108.0 14.9 136 14-151 22-238 (500)
125 3g5u_A MCG1178, multidrug resi 99.3 1.7E-14 5.9E-19 145.0 -9.8 170 23-212 406-596 (1284)
126 3j16_B RLI1P; ribosome recycli 99.2 2.6E-14 8.7E-19 132.9 -9.6 151 38-213 381-541 (608)
127 2x8a_A Nuclear valosin-contain 99.2 1.3E-10 4.5E-15 98.0 13.2 126 9-134 5-193 (274)
128 4f4c_A Multidrug resistance pr 99.2 3.8E-13 1.3E-17 135.6 -3.1 162 24-204 435-617 (1321)
129 1yqt_A RNAse L inhibitor; ATP- 99.2 3.5E-13 1.2E-17 124.1 -3.2 85 127-213 138-231 (538)
130 3bk7_A ABC transporter ATP-bin 99.2 3.2E-13 1.1E-17 125.7 -3.8 85 127-213 208-301 (607)
131 3g5u_A MCG1178, multidrug resi 99.2 1.8E-14 6.2E-19 144.8 -13.2 175 23-213 1049-1242(1284)
132 3ozx_A RNAse L inhibitor; ATP 99.2 2.9E-13 1E-17 124.4 -4.3 84 127-212 118-209 (538)
133 2cbz_A Multidrug resistance-as 99.2 3.2E-14 1.1E-18 117.6 -9.9 160 25-213 23-201 (237)
134 3n70_A Transport activator; si 99.2 9.4E-11 3.2E-15 89.3 10.2 86 15-100 2-116 (145)
135 3ux8_A Excinuclease ABC, A sub 99.2 3.2E-13 1.1E-17 127.9 -4.9 80 131-213 185-276 (670)
136 1u0j_A DNA replication protein 99.2 1.3E-10 4.4E-15 96.6 11.1 114 24-139 91-257 (267)
137 3f9v_A Minichromosome maintena 99.2 4.9E-11 1.7E-15 111.1 9.3 121 14-134 295-492 (595)
138 1ypw_A Transitional endoplasmi 99.2 9.4E-11 3.2E-15 112.9 11.5 147 7-154 197-406 (806)
139 4f4c_A Multidrug resistance pr 99.1 2.1E-13 7.2E-18 137.5 -9.7 175 23-213 1095-1288(1321)
140 1tue_A Replication protein E1; 99.1 2E-10 6.7E-15 91.4 8.6 94 23-118 45-178 (212)
141 3co5_A Putative two-component 99.1 9.9E-11 3.4E-15 89.0 6.7 98 15-112 5-133 (143)
142 1g41_A Heat shock protein HSLU 99.1 1.1E-09 3.8E-14 97.7 14.0 88 63-150 253-380 (444)
143 2kjq_A DNAA-related protein; s 99.0 2.3E-10 8E-15 87.5 6.3 97 12-112 15-140 (149)
144 1ypw_A Transitional endoplasmi 99.0 2.5E-12 8.5E-17 123.8 -6.3 157 9-166 472-698 (806)
145 2npi_A Protein CLP1; CLP1-PCF1 99.0 1.9E-12 6.4E-17 116.7 -7.1 154 25-209 130-313 (460)
146 1znw_A Guanylate kinase, GMP k 99.0 3.2E-14 1.1E-18 115.3 -17.3 56 158-213 137-201 (207)
147 2iw3_A Elongation factor 3A; a 99.0 3.2E-11 1.1E-15 116.7 -0.6 155 26-213 454-618 (986)
148 2iw3_A Elongation factor 3A; a 99.0 1.1E-12 3.8E-17 126.7 -11.6 86 126-213 878-971 (986)
149 2qen_A Walker-type ATPase; unk 99.0 4.5E-08 1.5E-12 84.8 17.7 145 10-157 8-241 (350)
150 3upu_A ATP-dependent DNA helic 99.0 1.9E-09 6.3E-14 97.7 9.2 95 2-100 12-165 (459)
151 3dzd_A Transcriptional regulat 98.9 7E-08 2.4E-12 84.7 16.9 153 15-169 130-361 (368)
152 1tq4_A IIGP1, interferon-induc 98.9 2.1E-10 7.1E-15 101.8 0.2 163 20-215 36-252 (413)
153 2w58_A DNAI, primosome compone 98.8 6.3E-09 2.2E-13 83.4 7.8 56 4-59 15-78 (202)
154 4gp7_A Metallophosphoesterase; 98.8 3.9E-10 1.3E-14 88.3 -0.6 48 158-205 97-164 (171)
155 3ux8_A Excinuclease ABC, A sub 98.8 1.4E-10 4.9E-15 109.8 -4.8 83 129-213 524-618 (670)
156 2qgz_A Helicase loader, putati 98.7 1.3E-08 4.6E-13 87.1 6.7 55 6-60 116-177 (308)
157 1ny5_A Transcriptional regulat 98.7 5.8E-07 2E-11 79.4 16.1 155 13-169 136-370 (387)
158 2pt7_A CAG-ALFA; ATPase, prote 98.7 3.5E-08 1.2E-12 85.3 7.7 47 22-70 160-208 (330)
159 2fna_A Conserved hypothetical 98.6 6.1E-07 2.1E-11 77.8 14.6 141 11-158 10-246 (357)
160 4akg_A Glutathione S-transfera 98.6 3.8E-07 1.3E-11 96.7 14.1 109 24-134 1258-1433(2695)
161 3f8t_A Predicted ATPase involv 98.6 1.7E-06 5.7E-11 77.2 15.8 96 16-112 215-372 (506)
162 2vf7_A UVRA2, excinuclease ABC 98.5 4.7E-10 1.6E-14 107.5 -8.7 85 127-213 709-805 (842)
163 2ehv_A Hypothetical protein PH 98.5 2.2E-08 7.7E-13 82.7 0.9 39 29-69 26-68 (251)
164 2r6f_A Excinuclease ABC subuni 98.4 3.7E-08 1.3E-12 94.9 1.3 83 129-213 826-920 (972)
165 1tf7_A KAIC; homohexamer, hexa 98.4 8.3E-10 2.9E-14 101.6 -9.9 160 14-211 19-205 (525)
166 3pih_A Uvrabc system protein A 98.4 1.7E-08 5.7E-13 97.6 -1.3 84 128-213 785-880 (916)
167 1htw_A HI0065; nucleotide-bind 98.4 3.9E-08 1.3E-12 75.7 0.7 44 22-68 22-67 (158)
168 2ygr_A Uvrabc system protein A 98.4 9.3E-08 3.2E-12 92.5 2.4 82 129-213 844-938 (993)
169 3sop_A Neuronal-specific septi 98.4 2.9E-09 1E-13 89.4 -7.2 122 38-179 5-130 (270)
170 4aby_A DNA repair protein RECN 98.4 7E-08 2.4E-12 86.1 1.1 63 150-213 296-368 (415)
171 3b9q_A Chloroplast SRP recepto 98.3 1.6E-08 5.4E-13 86.3 -3.6 38 38-75 103-142 (302)
172 2w0m_A SSO2452; RECA, SSPF, un 98.3 4.4E-07 1.5E-11 73.9 4.3 36 30-67 20-58 (235)
173 1e69_A Chromosome segregation 98.3 5.9E-09 2E-13 90.0 -7.7 63 147-210 217-291 (322)
174 2og2_A Putative signal recogni 98.3 3.7E-08 1.3E-12 85.8 -3.1 38 38-75 160-199 (359)
175 1s96_A Guanylate kinase, GMP k 98.3 4.2E-06 1.4E-10 67.9 9.2 30 30-61 13-42 (219)
176 3b85_A Phosphate starvation-in 98.2 6.3E-07 2.2E-11 72.2 3.1 42 7-58 4-45 (208)
177 4akg_A Glutathione S-transfera 98.2 3.6E-05 1.2E-09 82.0 16.6 104 24-129 636-790 (2695)
178 1z6g_A Guanylate kinase; struc 98.1 1.3E-06 4.6E-11 70.8 3.8 38 21-60 11-48 (218)
179 1nlf_A Regulatory protein REPA 98.1 5.3E-07 1.8E-11 76.0 0.4 28 30-59 27-54 (279)
180 2gza_A Type IV secretion syste 98.1 5E-06 1.7E-10 72.7 6.4 45 24-70 166-212 (361)
181 1zp6_A Hypothetical protein AT 98.0 1.4E-06 4.7E-11 68.9 2.3 36 31-68 7-42 (191)
182 2orw_A Thymidine kinase; TMTK, 98.0 6.1E-06 2.1E-10 65.0 5.6 60 38-100 6-113 (184)
183 3e70_C DPA, signal recognition 98.0 3.9E-07 1.3E-11 78.5 -1.5 36 38-73 132-169 (328)
184 2v9p_A Replication protein E1; 98.0 3.2E-06 1.1E-10 71.8 4.1 40 22-63 115-154 (305)
185 4a74_A DNA repair and recombin 98.0 5.2E-06 1.8E-10 67.4 5.1 44 30-75 22-74 (231)
186 3jvv_A Twitching mobility prot 98.0 1.8E-05 6.1E-10 68.9 8.6 46 10-60 103-148 (356)
187 2jeo_A Uridine-cytidine kinase 98.0 2.3E-06 7.8E-11 70.6 2.8 41 18-60 10-50 (245)
188 2oap_1 GSPE-2, type II secreti 98.0 7.4E-06 2.5E-10 74.7 6.3 50 19-70 246-297 (511)
189 2eyu_A Twitching motility prot 98.0 2.9E-06 9.7E-11 70.8 3.1 55 10-69 5-62 (261)
190 1p9r_A General secretion pathw 98.0 1.1E-05 3.9E-10 71.6 7.1 55 11-67 144-202 (418)
191 3thx_B DNA mismatch repair pro 98.0 3E-07 1E-11 89.0 -3.5 48 162-210 752-805 (918)
192 3tr0_A Guanylate kinase, GMP k 98.0 3.7E-06 1.3E-10 67.1 3.2 27 31-59 5-31 (205)
193 1ye8_A Protein THEP1, hypothet 97.9 4.7E-06 1.6E-10 65.3 3.5 63 147-209 74-152 (178)
194 3vkg_A Dynein heavy chain, cyt 97.9 6.6E-05 2.2E-09 80.7 12.8 109 24-134 1295-1471(3245)
195 1lvg_A Guanylate kinase, GMP k 97.9 5.9E-06 2E-10 65.9 3.8 27 32-60 3-29 (198)
196 4eun_A Thermoresistant glucoki 97.9 7.7E-06 2.6E-10 65.2 4.4 34 32-69 28-61 (200)
197 3vaa_A Shikimate kinase, SK; s 97.9 5.4E-06 1.9E-10 66.1 3.4 45 22-68 14-58 (199)
198 3a00_A Guanylate kinase, GMP k 97.9 6.5E-06 2.2E-10 64.9 3.7 23 38-60 4-26 (186)
199 1kgd_A CASK, peripheral plasma 97.9 6.8E-06 2.3E-10 64.4 3.3 26 33-60 5-30 (180)
200 3uie_A Adenylyl-sulfate kinase 97.9 7.7E-06 2.6E-10 65.2 3.4 42 25-68 17-61 (200)
201 2obl_A ESCN; ATPase, hydrolase 97.9 1.1E-05 3.8E-10 70.0 4.6 47 20-69 59-107 (347)
202 3sr0_A Adenylate kinase; phosp 97.8 0.0001 3.4E-09 59.1 9.8 25 38-62 3-27 (206)
203 1kag_A SKI, shikimate kinase I 97.8 1.2E-05 4.2E-10 62.2 4.2 28 38-67 7-34 (173)
204 3c8u_A Fructokinase; YP_612366 97.8 6E-06 2E-10 66.3 2.4 33 38-70 25-62 (208)
205 1z6t_A APAF-1, apoptotic prote 97.8 0.00014 4.9E-09 67.5 11.8 47 10-56 120-168 (591)
206 2dpy_A FLII, flagellum-specifi 97.8 1.4E-05 4.9E-10 71.4 4.8 47 20-69 145-193 (438)
207 2o8b_B DNA mismatch repair pro 97.8 2.4E-06 8E-11 84.0 -0.4 49 161-209 867-921 (1022)
208 1rj9_A FTSY, signal recognitio 97.8 1.4E-05 4.9E-10 68.0 4.3 35 38-72 105-141 (304)
209 2i3b_A HCR-ntpase, human cance 97.8 1.5E-05 5.1E-10 63.1 4.1 26 33-60 1-26 (189)
210 3dl0_A Adenylate kinase; phosp 97.8 0.00035 1.2E-08 56.1 12.3 25 38-62 3-27 (216)
211 3tau_A Guanylate kinase, GMP k 97.8 1.1E-05 3.6E-10 64.9 3.1 28 32-61 7-34 (208)
212 3nwj_A ATSK2; P loop, shikimat 97.8 1.8E-05 6.2E-10 65.4 4.6 40 20-61 32-74 (250)
213 2j41_A Guanylate kinase; GMP, 97.8 1.1E-05 3.8E-10 64.4 3.0 29 31-61 4-32 (207)
214 3exa_A TRNA delta(2)-isopenten 97.8 0.00015 5.3E-09 61.4 10.1 131 38-174 6-178 (322)
215 1knq_A Gluconate kinase; ALFA/ 97.7 1.7E-05 6E-10 61.5 3.7 29 38-68 11-39 (175)
216 2ga8_A Hypothetical 39.9 kDa p 97.7 2.2E-05 7.5E-10 67.8 4.6 39 22-60 11-49 (359)
217 3asz_A Uridine kinase; cytidin 97.7 1.1E-05 3.8E-10 64.7 2.6 28 32-61 5-32 (211)
218 2bdt_A BH3686; alpha-beta prot 97.7 1.7E-05 5.9E-10 62.4 3.5 29 38-67 5-33 (189)
219 1ex7_A Guanylate kinase; subst 97.7 0.00018 6.3E-09 56.5 9.4 23 38-60 4-26 (186)
220 3crm_A TRNA delta(2)-isopenten 97.7 4.5E-05 1.5E-09 65.2 6.1 32 38-69 8-39 (323)
221 1sq5_A Pantothenate kinase; P- 97.7 2.9E-05 9.8E-10 66.3 4.7 28 31-60 78-105 (308)
222 1qhx_A CPT, protein (chloramph 97.7 3.3E-05 1.1E-09 60.0 4.7 28 38-65 6-33 (178)
223 3ctd_A Putative ATPase, AAA fa 97.7 1.6E-05 5.6E-10 62.4 2.8 62 202-285 27-88 (213)
224 2yhs_A FTSY, cell division pro 97.7 3.4E-05 1.2E-09 69.5 5.1 37 38-74 296-334 (503)
225 3lnc_A Guanylate kinase, GMP k 97.7 1.1E-05 3.7E-10 65.9 1.6 29 29-59 23-52 (231)
226 3bge_A Predicted ATPase; struc 97.7 2.9E-05 9.8E-10 60.4 3.8 47 231-285 14-60 (201)
227 1svm_A Large T antigen; AAA+ f 97.7 2.9E-05 9.9E-10 68.0 4.3 31 30-62 166-196 (377)
228 3aez_A Pantothenate kinase; tr 97.7 1.6E-05 5.4E-10 68.0 2.6 24 38-61 93-116 (312)
229 1n0w_A DNA repair protein RAD5 97.7 4E-05 1.4E-09 62.6 4.9 44 30-75 21-73 (243)
230 3fb4_A Adenylate kinase; psych 97.7 0.00036 1.2E-08 55.9 10.5 29 38-66 3-31 (216)
231 3ney_A 55 kDa erythrocyte memb 97.6 2.8E-05 9.5E-10 61.8 3.5 27 32-60 18-44 (197)
232 3foz_A TRNA delta(2)-isopenten 97.6 0.00024 8.2E-09 60.1 9.1 31 38-68 13-43 (316)
233 1cr0_A DNA primase/helicase; R 97.6 1E-05 3.5E-10 68.6 0.8 46 21-68 23-72 (296)
234 2ze6_A Isopentenyl transferase 97.6 4.8E-05 1.6E-09 63.0 4.6 31 38-68 4-34 (253)
235 3llm_A ATP-dependent RNA helic 97.6 0.00016 5.4E-09 59.0 7.6 24 31-56 74-97 (235)
236 2pez_A Bifunctional 3'-phospho 97.6 5.4E-05 1.8E-09 59.0 4.5 31 38-68 8-41 (179)
237 3tqc_A Pantothenate kinase; bi 97.6 5.7E-05 1.9E-09 64.7 4.9 23 38-60 95-117 (321)
238 2qag_B Septin-6, protein NEDD5 97.6 1.5E-05 5.1E-10 70.7 1.1 37 23-59 30-66 (427)
239 2cvh_A DNA repair and recombin 97.6 0.00011 3.7E-09 59.0 6.2 42 31-74 18-59 (220)
240 2bbw_A Adenylate kinase 4, AK4 97.6 4E-05 1.4E-09 63.1 3.7 23 38-60 30-52 (246)
241 2qor_A Guanylate kinase; phosp 97.6 4.5E-05 1.5E-09 60.9 3.9 27 32-60 11-37 (204)
242 3kb2_A SPBC2 prophage-derived 97.6 4.5E-05 1.6E-09 58.8 3.6 25 38-62 4-28 (173)
243 2p5t_B PEZT; postsegregational 97.6 4.6E-05 1.6E-09 63.1 3.8 31 38-68 35-65 (253)
244 1gvn_B Zeta; postsegregational 97.5 0.00012 4.3E-09 61.7 6.4 30 38-67 36-65 (287)
245 3vkg_A Dynein heavy chain, cyt 97.5 0.00074 2.5E-08 72.9 13.5 109 25-138 596-756 (3245)
246 3sfz_A APAF-1, apoptotic pepti 97.5 0.00089 3.1E-08 67.3 13.7 49 10-58 120-170 (1249)
247 3trf_A Shikimate kinase, SK; a 97.5 5.9E-05 2E-09 59.0 4.0 31 37-67 7-37 (185)
248 2f1r_A Molybdopterin-guanine d 97.5 4.1E-05 1.4E-09 59.5 2.8 33 38-70 5-42 (171)
249 1pzn_A RAD51, DNA repair and r 97.5 8.9E-05 3.1E-09 64.4 5.3 40 31-72 129-177 (349)
250 3t61_A Gluconokinase; PSI-biol 97.5 5.8E-05 2E-09 60.0 3.8 24 38-61 21-44 (202)
251 3e1s_A Exodeoxyribonuclease V, 97.5 0.00015 5.3E-09 67.1 7.1 76 19-100 191-316 (574)
252 3d3q_A TRNA delta(2)-isopenten 97.5 0.00053 1.8E-08 58.9 9.8 32 38-69 10-41 (340)
253 1via_A Shikimate kinase; struc 97.5 6.9E-05 2.4E-09 58.2 3.9 25 37-61 6-30 (175)
254 2qm8_A GTPase/ATPase; G protei 97.5 3.4E-05 1.2E-09 66.7 2.2 29 30-60 52-80 (337)
255 1lw7_A Transcriptional regulat 97.5 4.4E-05 1.5E-09 66.7 2.8 28 33-62 170-197 (365)
256 4e22_A Cytidylate kinase; P-lo 97.5 6.2E-05 2.1E-09 62.3 3.6 28 31-60 25-52 (252)
257 3kta_A Chromosome segregation 97.5 6.8E-05 2.3E-09 58.5 3.5 24 38-61 29-52 (182)
258 1cke_A CK, MSSA, protein (cyti 97.4 7.7E-05 2.6E-09 60.3 3.7 24 38-61 8-31 (227)
259 3lw7_A Adenylate kinase relate 97.4 5.8E-05 2E-09 58.2 2.7 26 38-64 4-29 (179)
260 2r9g_A AAA ATPase, central reg 97.4 3.7E-05 1.3E-09 60.0 1.5 46 231-285 21-66 (204)
261 3iij_A Coilin-interacting nucl 97.4 0.00011 3.8E-09 57.2 4.1 25 38-62 14-38 (180)
262 1kht_A Adenylate kinase; phosp 97.4 8.4E-05 2.9E-09 58.3 3.5 23 38-60 6-28 (192)
263 3cm0_A Adenylate kinase; ATP-b 97.4 6.4E-05 2.2E-09 58.8 2.7 24 38-61 7-30 (186)
264 3thx_A DNA mismatch repair pro 97.4 0.00023 7.7E-09 69.3 6.6 24 31-56 660-683 (934)
265 1ly1_A Polynucleotide kinase; 97.4 9.9E-05 3.4E-09 57.3 3.3 21 38-58 5-25 (181)
266 2b8t_A Thymidine kinase; deoxy 97.4 0.00029 9.9E-09 57.0 6.1 27 31-59 10-36 (223)
267 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00037 1.3E-08 59.3 7.0 21 38-58 126-146 (331)
268 1zuh_A Shikimate kinase; alpha 97.4 0.00011 3.8E-09 56.5 3.5 31 37-67 9-39 (168)
269 2rcn_A Probable GTPase ENGC; Y 97.4 3.3E-05 1.1E-09 67.0 0.5 35 23-60 206-240 (358)
270 2iyv_A Shikimate kinase, SK; t 97.4 0.00014 4.8E-09 56.8 4.1 27 38-64 5-31 (184)
271 2ewv_A Twitching motility prot 97.3 7.9E-05 2.7E-09 65.3 2.8 29 30-60 133-161 (372)
272 3euj_A Chromosome partition pr 97.3 9.3E-05 3.2E-09 66.7 3.2 37 31-70 28-66 (483)
273 2vp4_A Deoxynucleoside kinase; 97.3 6.8E-05 2.3E-09 61.1 2.1 29 38-67 23-51 (230)
274 1rz3_A Hypothetical protein rb 97.3 0.00029 9.8E-09 56.0 5.8 29 38-66 25-56 (201)
275 2pbr_A DTMP kinase, thymidylat 97.3 0.00023 7.8E-09 55.9 5.1 32 38-69 3-37 (195)
276 2rhm_A Putative kinase; P-loop 97.3 0.00012 4E-09 57.6 3.4 30 38-67 8-37 (193)
277 1odf_A YGR205W, hypothetical 3 97.3 0.00032 1.1E-08 59.2 6.1 23 38-60 34-56 (290)
278 1nks_A Adenylate kinase; therm 97.3 0.00012 4E-09 57.5 3.2 23 38-60 4-26 (194)
279 2z0h_A DTMP kinase, thymidylat 97.3 0.00024 8.1E-09 56.0 5.0 32 38-69 3-37 (197)
280 1qhl_A Protein (cell division 97.3 3.9E-05 1.3E-09 62.3 0.3 33 38-70 30-64 (227)
281 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 58.0 3.3 30 38-67 23-52 (201)
282 3hr8_A Protein RECA; alpha and 97.3 0.00019 6.7E-09 62.2 4.7 51 24-74 47-103 (356)
283 3lda_A DNA repair protein RAD5 97.3 0.00022 7.5E-09 63.0 5.1 52 31-84 176-236 (400)
284 3cr8_A Sulfate adenylyltranfer 97.3 0.00014 4.9E-09 66.8 4.0 46 21-68 353-406 (552)
285 1vma_A Cell division protein F 97.3 0.0002 7E-09 60.9 4.6 38 38-76 107-147 (306)
286 2c95_A Adenylate kinase 1; tra 97.3 0.00018 6.3E-09 56.6 4.1 24 38-61 12-35 (196)
287 1jjv_A Dephospho-COA kinase; P 97.3 0.00011 3.8E-09 58.5 2.7 20 38-57 5-24 (206)
288 2pt5_A Shikimate kinase, SK; a 97.3 0.00015 5.2E-09 55.7 3.4 31 38-68 3-33 (168)
289 2jaq_A Deoxyguanosine kinase; 97.3 0.00016 5.6E-09 57.2 3.7 24 38-61 3-26 (205)
290 3zvl_A Bifunctional polynucleo 97.3 0.00032 1.1E-08 62.4 5.9 24 38-61 261-284 (416)
291 2yvu_A Probable adenylyl-sulfa 97.3 0.00014 4.7E-09 57.0 3.1 30 38-67 16-48 (186)
292 1y63_A LMAJ004144AAA protein; 97.3 0.00016 5.4E-09 56.7 3.4 22 37-58 12-33 (184)
293 2if2_A Dephospho-COA kinase; a 97.3 0.00013 4.5E-09 58.0 2.9 27 38-65 4-30 (204)
294 1e6c_A Shikimate kinase; phosp 97.2 0.00019 6.6E-09 55.3 3.7 25 38-62 5-29 (173)
295 2plr_A DTMP kinase, probable t 97.2 0.00015 5.2E-09 57.8 3.2 31 38-68 7-39 (213)
296 2v54_A DTMP kinase, thymidylat 97.2 0.00022 7.4E-09 56.6 4.0 33 38-70 7-40 (204)
297 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.9E-09 57.7 3.7 25 38-62 7-31 (220)
298 3tlx_A Adenylate kinase 2; str 97.2 0.00042 1.4E-08 56.9 5.6 24 38-61 32-55 (243)
299 2bwj_A Adenylate kinase 5; pho 97.2 0.00024 8.1E-09 56.1 3.9 24 38-61 15-38 (199)
300 1tev_A UMP-CMP kinase; ploop, 97.2 0.00021 7.3E-09 56.0 3.7 24 38-61 6-29 (196)
301 1xx6_A Thymidine kinase; NESG, 97.2 0.00059 2E-08 53.8 6.1 25 33-59 8-32 (191)
302 1u0l_A Probable GTPase ENGC; p 97.2 0.00011 3.8E-09 62.4 2.0 29 32-62 168-196 (301)
303 2vli_A Antibiotic resistance p 97.2 0.00015 5E-09 56.5 2.4 27 38-64 8-34 (183)
304 2qt1_A Nicotinamide riboside k 97.2 0.0001 3.5E-09 58.9 1.4 22 38-59 24-45 (207)
305 1m7g_A Adenylylsulfate kinase; 97.2 0.00019 6.4E-09 57.6 2.9 35 31-67 23-61 (211)
306 1zak_A Adenylate kinase; ATP:A 97.2 0.00026 8.9E-09 57.1 3.7 24 38-61 8-31 (222)
307 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00038 1.3E-08 57.8 4.8 30 38-67 7-39 (260)
308 2wwf_A Thymidilate kinase, put 97.1 0.00021 7.3E-09 57.0 3.1 32 38-69 13-47 (212)
309 1w4r_A Thymidine kinase; type 97.1 0.00057 1.9E-08 53.8 5.4 26 32-59 19-45 (195)
310 4b3f_X DNA-binding protein smu 97.1 0.00068 2.3E-08 63.8 7.0 39 18-58 190-228 (646)
311 1e4v_A Adenylate kinase; trans 97.1 0.0002 6.9E-09 57.5 2.9 29 38-66 3-31 (214)
312 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00028 9.6E-09 53.4 3.4 23 38-60 26-48 (149)
313 1z0j_A RAB-22, RAS-related pro 97.1 0.0014 4.6E-08 49.8 7.3 22 38-59 9-30 (170)
314 3r20_A Cytidylate kinase; stru 97.1 0.0003 1E-08 57.3 3.7 24 38-61 12-35 (233)
315 1qf9_A UMP/CMP kinase, protein 97.1 0.00026 9E-09 55.4 3.2 24 38-61 9-32 (194)
316 1nn5_A Similar to deoxythymidy 97.1 0.00023 8E-09 56.9 3.0 32 38-69 12-46 (215)
317 3umf_A Adenylate kinase; rossm 97.1 0.00031 1.1E-08 56.6 3.6 24 38-61 32-55 (217)
318 1zd8_A GTP:AMP phosphotransfer 97.1 0.00025 8.7E-09 57.4 3.1 24 38-61 10-33 (227)
319 2yv5_A YJEQ protein; hydrolase 97.1 0.00023 8E-09 60.5 3.0 28 32-62 164-191 (302)
320 3be4_A Adenylate kinase; malar 97.1 0.00023 7.7E-09 57.4 2.7 29 38-66 8-36 (217)
321 3tw8_B RAS-related protein RAB 97.1 0.00068 2.3E-08 52.2 5.4 21 38-58 12-32 (181)
322 2f9l_A RAB11B, member RAS onco 97.1 0.0003 1E-08 55.6 3.3 23 38-60 8-30 (199)
323 4eaq_A DTMP kinase, thymidylat 97.1 0.00028 9.6E-09 57.4 3.1 35 32-68 25-61 (229)
324 1ukz_A Uridylate kinase; trans 97.1 0.00032 1.1E-08 55.6 3.5 24 38-61 18-41 (203)
325 2wsm_A Hydrogenase expression/ 97.1 0.00034 1.2E-08 56.2 3.6 42 19-60 14-55 (221)
326 1w36_D RECD, exodeoxyribonucle 97.1 0.0019 6.4E-08 60.3 9.0 19 38-56 167-185 (608)
327 1oix_A RAS-related protein RAB 97.1 0.00028 9.4E-09 55.5 2.9 24 38-61 32-55 (191)
328 2xb4_A Adenylate kinase; ATP-b 97.0 0.00038 1.3E-08 56.3 3.7 29 38-66 3-31 (223)
329 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.0019 6.3E-08 49.5 7.5 22 38-59 10-31 (177)
330 1z2a_A RAS-related protein RAB 97.0 0.00098 3.4E-08 50.5 5.7 22 38-59 8-29 (168)
331 1np6_A Molybdopterin-guanine d 97.0 0.00044 1.5E-08 53.7 3.7 25 36-60 7-31 (174)
332 1t9h_A YLOQ, probable GTPase E 97.0 8E-05 2.7E-09 63.3 -0.7 28 32-61 172-199 (307)
333 1ak2_A Adenylate kinase isoenz 97.0 0.00042 1.4E-08 56.4 3.7 27 38-64 19-45 (233)
334 1zu4_A FTSY; GTPase, signal re 97.0 0.00069 2.4E-08 58.0 5.0 38 38-75 108-147 (320)
335 1kao_A RAP2A; GTP-binding prot 97.0 0.0063 2.1E-07 45.8 9.9 22 38-59 6-27 (167)
336 3dz8_A RAS-related protein RAB 97.0 0.0018 6.3E-08 50.5 7.0 23 38-60 26-48 (191)
337 1gtv_A TMK, thymidylate kinase 97.0 0.0002 7E-09 57.2 1.4 23 38-60 3-25 (214)
338 4gzl_A RAS-related C3 botulinu 97.0 0.001 3.4E-08 52.8 5.4 41 19-59 14-54 (204)
339 2px0_A Flagellar biosynthesis 97.0 0.00038 1.3E-08 59.0 3.0 30 38-67 108-141 (296)
340 1m7b_A RND3/RHOE small GTP-bin 97.0 0.0013 4.4E-08 51.1 6.0 22 38-59 10-31 (184)
341 3ake_A Cytidylate kinase; CMP 97.0 0.0005 1.7E-08 54.6 3.6 24 38-61 5-28 (208)
342 2grj_A Dephospho-COA kinase; T 96.9 0.00041 1.4E-08 54.8 2.9 26 38-63 15-40 (192)
343 3e2i_A Thymidine kinase; Zn-bi 96.9 0.0018 6.1E-08 51.8 6.5 26 31-58 26-52 (219)
344 2dr3_A UPF0273 protein PH0284; 96.9 0.00035 1.2E-08 57.0 2.5 38 30-69 20-60 (247)
345 1u8z_A RAS-related protein RAL 96.9 0.0017 5.9E-08 49.0 6.3 22 38-59 7-28 (168)
346 2ce2_X GTPase HRAS; signaling 96.9 0.0018 6.1E-08 48.8 6.4 23 38-60 6-28 (166)
347 1xjc_A MOBB protein homolog; s 96.9 0.00068 2.3E-08 52.3 3.8 25 36-60 5-29 (169)
348 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00048 1.6E-08 60.1 3.3 63 147-210 277-354 (365)
349 1ek0_A Protein (GTP-binding pr 96.9 0.0023 8E-08 48.4 6.8 22 38-59 6-27 (170)
350 3reg_A RHO-like small GTPase; 96.9 0.0018 6.2E-08 50.6 6.3 23 38-60 26-48 (194)
351 2hf9_A Probable hydrogenase ni 96.9 0.0011 3.6E-08 53.4 5.1 40 21-60 24-63 (226)
352 1z0f_A RAB14, member RAS oncog 96.9 0.0023 7.8E-08 49.0 6.8 22 38-59 18-39 (179)
353 1q3t_A Cytidylate kinase; nucl 96.9 0.00058 2E-08 55.7 3.4 24 38-61 19-42 (236)
354 3szr_A Interferon-induced GTP- 96.9 0.00031 1.1E-08 65.5 1.9 28 34-61 44-71 (608)
355 3oes_A GTPase rhebl1; small GT 96.9 0.0082 2.8E-07 47.2 10.0 22 38-59 27-48 (201)
356 3q3j_B RHO-related GTP-binding 96.9 0.0023 7.7E-08 51.2 6.8 22 38-59 30-51 (214)
357 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00087 3E-08 59.0 4.6 35 34-68 34-71 (392)
358 2z43_A DNA repair and recombin 96.8 0.0013 4.4E-08 56.4 5.4 38 38-75 110-156 (324)
359 1r2q_A RAS-related protein RAB 96.8 0.0028 9.4E-08 48.0 6.8 22 38-59 9-30 (170)
360 1w1w_A Structural maintenance 96.8 0.00065 2.2E-08 60.6 3.7 29 32-62 25-53 (430)
361 1uj2_A Uridine-cytidine kinase 96.8 0.00069 2.4E-08 55.8 3.5 24 38-61 25-48 (252)
362 1z08_A RAS-related protein RAB 96.8 0.0023 7.9E-08 48.6 6.3 22 38-59 9-30 (170)
363 1vht_A Dephospho-COA kinase; s 96.8 0.00066 2.2E-08 54.5 3.3 22 38-60 7-28 (218)
364 3qks_A DNA double-strand break 96.8 0.00065 2.2E-08 54.1 3.2 24 38-61 26-49 (203)
365 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.002 6.9E-08 49.7 6.0 22 38-59 8-29 (186)
366 1gwn_A RHO-related GTP-binding 96.8 0.0019 6.6E-08 51.3 6.0 22 38-59 31-52 (205)
367 1v5w_A DMC1, meiotic recombina 96.8 0.0013 4.5E-08 56.8 5.3 38 38-75 125-171 (343)
368 3con_A GTPase NRAS; structural 96.8 0.0027 9.2E-08 49.4 6.7 22 38-59 24-45 (190)
369 1uf9_A TT1252 protein; P-loop, 96.8 0.00061 2.1E-08 53.9 2.9 21 38-58 11-31 (203)
370 2j9r_A Thymidine kinase; TK1, 96.8 0.0017 5.7E-08 52.0 5.4 22 38-59 31-52 (214)
371 1wb9_A DNA mismatch repair pro 96.8 0.00059 2E-08 65.5 3.1 48 162-210 686-739 (800)
372 2efe_B Small GTP-binding prote 96.8 0.0038 1.3E-07 47.9 7.3 22 38-59 15-36 (181)
373 3a8t_A Adenylate isopentenyltr 96.8 0.00061 2.1E-08 58.4 2.8 30 38-67 43-72 (339)
374 1g16_A RAS-related protein SEC 96.8 0.0027 9.1E-08 48.2 6.3 22 38-59 6-27 (170)
375 1ewq_A DNA mismatch repair pro 96.8 0.0007 2.4E-08 64.6 3.5 25 33-59 576-600 (765)
376 3bwd_D RAC-like GTP-binding pr 96.8 0.0022 7.7E-08 49.3 5.9 22 38-59 11-32 (182)
377 3t5g_A GTP-binding protein RHE 96.8 0.012 4.2E-07 45.1 10.1 22 38-59 9-30 (181)
378 1ls1_A Signal recognition part 96.7 0.0016 5.5E-08 55.0 5.3 38 38-75 101-140 (295)
379 2a9k_A RAS-related protein RAL 96.7 0.0027 9.2E-08 49.0 6.3 22 38-59 21-42 (187)
380 2zr9_A Protein RECA, recombina 96.7 0.00058 2E-08 59.2 2.6 40 32-73 60-102 (349)
381 2gf9_A RAS-related protein RAB 96.7 0.0033 1.1E-07 48.9 6.7 22 38-59 25-46 (189)
382 3tkl_A RAS-related protein RAB 96.7 0.0032 1.1E-07 49.1 6.7 23 38-60 19-41 (196)
383 2wji_A Ferrous iron transport 96.7 0.00063 2.2E-08 51.9 2.5 21 38-58 6-26 (165)
384 1ky3_A GTP-binding protein YPT 96.7 0.0028 9.4E-08 48.7 6.2 22 38-59 11-32 (182)
385 1nrj_B SR-beta, signal recogni 96.7 0.0011 3.6E-08 53.1 3.8 28 33-60 10-37 (218)
386 2xau_A PRE-mRNA-splicing facto 96.7 0.0039 1.3E-07 59.8 8.3 32 25-58 101-132 (773)
387 1c1y_A RAS-related protein RAP 96.7 0.0031 1.1E-07 47.6 6.3 22 38-59 6-27 (167)
388 2fg5_A RAB-22B, RAS-related pr 96.7 0.0037 1.3E-07 48.8 6.9 22 38-59 26-47 (192)
389 2bov_A RAla, RAS-related prote 96.7 0.0036 1.2E-07 49.2 6.9 22 38-59 17-38 (206)
390 2fz4_A DNA repair protein RAD2 96.7 0.0096 3.3E-07 48.5 9.6 37 20-59 96-132 (237)
391 1pui_A ENGB, probable GTP-bind 96.7 0.00018 6.2E-09 57.3 -0.8 22 38-59 29-50 (210)
392 3q72_A GTP-binding protein RAD 96.7 0.0016 5.4E-08 49.4 4.6 21 38-58 5-25 (166)
393 3q85_A GTP-binding protein REM 96.7 0.0021 7.2E-08 48.8 5.3 20 38-57 5-24 (169)
394 1zbd_A Rabphilin-3A; G protein 96.7 0.0035 1.2E-07 49.3 6.7 22 38-59 11-32 (203)
395 2oil_A CATX-8, RAS-related pro 96.7 0.0033 1.1E-07 49.0 6.5 23 38-60 28-50 (193)
396 1upt_A ARL1, ADP-ribosylation 96.7 0.0096 3.3E-07 45.1 9.0 22 38-59 10-31 (171)
397 1nij_A Hypothetical protein YJ 96.7 0.00057 1.9E-08 58.5 2.1 24 36-59 5-28 (318)
398 3cmu_A Protein RECA, recombina 96.7 0.0018 6.1E-08 67.4 6.0 25 32-58 1426-1450(2050)
399 1ltq_A Polynucleotide kinase; 96.7 0.00093 3.2E-08 56.4 3.3 22 38-59 5-26 (301)
400 2bme_A RAB4A, RAS-related prot 96.7 0.003 1E-07 48.8 6.0 23 38-60 13-35 (186)
401 3lxx_A GTPase IMAP family memb 96.7 0.0043 1.5E-07 50.4 7.2 24 37-60 31-54 (239)
402 2g6b_A RAS-related protein RAB 96.7 0.0042 1.4E-07 47.6 6.7 23 38-60 13-35 (180)
403 3dm5_A SRP54, signal recogniti 96.6 0.0068 2.3E-07 54.0 8.8 23 38-60 103-125 (443)
404 4dsu_A GTPase KRAS, isoform 2B 96.6 0.0046 1.6E-07 47.7 7.0 23 38-60 7-29 (189)
405 1x3s_A RAS-related protein RAB 96.6 0.0041 1.4E-07 48.4 6.6 22 38-59 18-39 (195)
406 1tf7_A KAIC; homohexamer, hexa 96.6 0.00061 2.1E-08 62.5 2.0 30 29-60 277-306 (525)
407 1t6n_A Probable ATP-dependent 96.6 0.023 8E-07 45.2 11.2 19 38-56 54-72 (220)
408 2qnr_A Septin-2, protein NEDD5 96.6 0.00059 2E-08 57.9 1.6 21 38-58 21-41 (301)
409 2zej_A Dardarin, leucine-rich 96.6 0.00072 2.4E-08 52.6 2.0 21 38-58 5-25 (184)
410 1r8s_A ADP-ribosylation factor 96.6 0.012 4.2E-07 44.1 9.1 23 38-60 3-25 (164)
411 2o5v_A DNA replication and rep 96.6 0.0011 3.8E-08 57.6 3.3 22 38-59 29-50 (359)
412 2dyk_A GTP-binding protein; GT 96.6 0.0011 3.9E-08 49.8 2.9 24 36-59 2-25 (161)
413 2www_A Methylmalonic aciduria 96.6 0.0013 4.5E-08 57.0 3.5 22 38-59 77-98 (349)
414 1zd9_A ADP-ribosylation factor 96.6 0.009 3.1E-07 46.4 8.2 23 38-60 25-47 (188)
415 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0052 1.8E-07 48.5 6.8 22 38-59 11-32 (206)
416 2a5j_A RAS-related protein RAB 96.6 0.0052 1.8E-07 47.8 6.7 22 38-59 24-45 (191)
417 2wjg_A FEOB, ferrous iron tran 96.5 0.0011 3.8E-08 51.5 2.7 21 38-58 10-30 (188)
418 2atx_A Small GTP binding prote 96.5 0.0041 1.4E-07 48.5 6.1 22 38-59 21-42 (194)
419 3qkt_A DNA double-strand break 96.5 0.0014 4.6E-08 56.6 3.4 63 147-210 246-323 (339)
420 3kkq_A RAS-related protein M-R 96.5 0.0053 1.8E-07 47.3 6.5 22 38-59 21-42 (183)
421 2j0v_A RAC-like GTP-binding pr 96.5 0.0036 1.2E-07 49.7 5.6 22 38-59 12-33 (212)
422 2qag_C Septin-7; cell cycle, c 96.5 0.00091 3.1E-08 59.3 2.3 23 38-60 34-56 (418)
423 2p67_A LAO/AO transport system 96.5 0.00086 2.9E-08 58.0 2.1 23 38-60 59-81 (341)
424 1vg8_A RAS-related protein RAB 96.5 0.0041 1.4E-07 49.0 5.9 22 38-59 11-32 (207)
425 2j1l_A RHO-related GTP-binding 96.5 0.0028 9.7E-08 50.5 5.0 21 38-58 37-57 (214)
426 2gco_A H9, RHO-related GTP-bin 96.5 0.0038 1.3E-07 49.1 5.7 22 38-59 28-49 (201)
427 2p5s_A RAS and EF-hand domain 96.5 0.0038 1.3E-07 49.1 5.6 22 38-59 31-52 (199)
428 2iwr_A Centaurin gamma 1; ANK 96.5 0.0054 1.8E-07 47.0 6.4 22 38-59 10-31 (178)
429 2qmh_A HPR kinase/phosphorylas 96.5 0.00087 3E-08 52.9 1.7 23 38-60 37-59 (205)
430 2fu5_C RAS-related protein RAB 96.5 0.0034 1.1E-07 48.4 5.2 22 38-59 11-32 (183)
431 2ew1_A RAS-related protein RAB 96.5 0.0045 1.5E-07 49.0 6.0 23 38-60 29-51 (201)
432 2q3h_A RAS homolog gene family 96.5 0.0035 1.2E-07 49.2 5.3 22 38-59 23-44 (201)
433 2fv8_A H6, RHO-related GTP-bin 96.5 0.0039 1.3E-07 49.4 5.6 22 38-59 28-49 (207)
434 2ged_A SR-beta, signal recogni 96.5 0.0017 6E-08 50.6 3.4 23 37-59 50-72 (193)
435 2ffh_A Protein (FFH); SRP54, s 96.5 0.0035 1.2E-07 55.6 5.7 38 38-76 101-141 (425)
436 3kl4_A SRP54, signal recogniti 96.5 0.002 7E-08 57.2 4.2 39 38-77 100-141 (433)
437 2gj8_A MNME, tRNA modification 96.5 0.0012 4E-08 50.9 2.4 22 38-59 7-28 (172)
438 2il1_A RAB12; G-protein, GDP, 96.5 0.003 1E-07 49.3 4.8 22 38-59 29-50 (192)
439 3cph_A RAS-related protein SEC 96.5 0.0061 2.1E-07 48.2 6.7 22 38-59 23-44 (213)
440 4edh_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 52.5 3.0 46 38-85 9-57 (213)
441 1zj6_A ADP-ribosylation factor 96.4 0.017 5.8E-07 44.6 9.1 22 37-58 18-39 (187)
442 3c5c_A RAS-like protein 12; GD 96.4 0.006 2E-07 47.4 6.4 22 38-59 24-45 (187)
443 2h92_A Cytidylate kinase; ross 96.4 0.0023 7.9E-08 51.2 4.1 24 38-61 6-29 (219)
444 3gj0_A GTP-binding nuclear pro 96.4 0.0038 1.3E-07 49.9 5.3 21 38-58 18-39 (221)
445 3cpj_B GTP-binding protein YPT 96.4 0.0065 2.2E-07 48.7 6.8 22 38-59 16-37 (223)
446 3v9p_A DTMP kinase, thymidylat 96.4 0.0013 4.5E-08 53.3 2.5 36 32-69 24-66 (227)
447 3eph_A TRNA isopentenyltransfe 96.4 0.0019 6.5E-08 56.7 3.6 30 38-67 5-34 (409)
448 3gmt_A Adenylate kinase; ssgci 96.4 0.0024 8.1E-08 51.8 3.9 25 38-62 11-35 (230)
449 3llu_A RAS-related GTP-binding 96.4 0.016 5.4E-07 45.3 8.7 21 38-58 23-43 (196)
450 3io5_A Recombination and repai 96.4 0.0082 2.8E-07 51.0 7.3 37 38-74 31-72 (333)
451 2hup_A RAS-related protein RAB 96.4 0.0052 1.8E-07 48.4 5.9 22 38-59 32-53 (201)
452 1a7j_A Phosphoribulokinase; tr 96.4 0.00086 2.9E-08 56.6 1.2 23 38-60 8-30 (290)
453 2f6r_A COA synthase, bifunctio 96.4 0.0015 5.2E-08 54.8 2.8 22 38-60 78-99 (281)
454 1c9k_A COBU, adenosylcobinamid 96.4 0.005 1.7E-07 47.9 5.4 44 38-82 2-45 (180)
455 3tqf_A HPR(Ser) kinase; transf 96.3 0.0015 5.3E-08 50.2 2.3 21 38-58 19-39 (181)
456 3lv8_A DTMP kinase, thymidylat 96.3 0.002 6.7E-08 52.6 3.1 35 33-69 27-65 (236)
457 1u94_A RECA protein, recombina 96.3 0.0017 6E-08 56.3 2.9 36 38-73 66-104 (356)
458 2h17_A ADP-ribosylation factor 96.3 0.0095 3.3E-07 45.9 6.9 22 38-59 24-45 (181)
459 1qde_A EIF4A, translation init 96.3 0.0082 2.8E-07 48.0 6.7 18 32-51 50-67 (224)
460 4tmk_A Protein (thymidylate ki 96.3 0.0022 7.4E-08 51.5 3.2 36 33-70 3-42 (213)
461 3tmk_A Thymidylate kinase; pho 96.3 0.0023 7.7E-08 51.5 3.3 51 32-85 4-54 (216)
462 1ni3_A YCHF GTPase, YCHF GTP-b 96.3 0.0018 6.1E-08 56.9 2.8 21 38-58 23-43 (392)
463 1ksh_A ARF-like protein 2; sma 96.3 0.012 4.2E-07 45.4 7.4 23 37-59 20-42 (186)
464 2nzj_A GTP-binding protein REM 96.3 0.0018 6.3E-08 49.4 2.5 22 38-59 7-28 (175)
465 2lkc_A Translation initiation 96.3 0.0027 9.3E-08 48.6 3.4 23 37-59 10-32 (178)
466 2o52_A RAS-related protein RAB 96.3 0.0054 1.8E-07 48.3 5.2 21 38-58 28-48 (200)
467 2i1q_A DNA repair and recombin 96.2 0.0044 1.5E-07 52.9 5.0 21 38-58 101-121 (322)
468 3k53_A Ferrous iron transport 96.2 0.0018 6.1E-08 53.9 2.4 23 37-59 5-27 (271)
469 2erx_A GTP-binding protein DI- 96.2 0.0023 7.7E-08 48.6 2.8 21 38-58 6-26 (172)
470 2r6a_A DNAB helicase, replicat 96.2 0.0033 1.1E-07 56.5 4.2 35 31-67 201-239 (454)
471 3p32_A Probable GTPase RV1496/ 96.2 0.009 3.1E-07 51.8 6.8 27 33-59 77-103 (355)
472 1ko7_A HPR kinase/phosphatase; 96.2 0.0035 1.2E-07 53.2 4.0 24 33-58 144-167 (314)
473 1x6v_B Bifunctional 3'-phospho 96.2 0.0034 1.2E-07 58.4 4.3 30 38-67 55-87 (630)
474 2a5y_B CED-4; apoptosis; HET: 96.2 0.0044 1.5E-07 57.0 5.0 41 17-57 131-174 (549)
475 2gxq_A Heat resistant RNA depe 96.2 0.011 3.6E-07 46.7 6.6 25 32-58 37-62 (207)
476 1svi_A GTP-binding protein YSX 96.2 0.0023 7.7E-08 50.0 2.6 24 35-58 23-46 (195)
477 3bc1_A RAS-related protein RAB 96.2 0.003 1E-07 49.0 3.3 22 38-59 14-35 (195)
478 1g8f_A Sulfate adenylyltransfe 96.2 0.0045 1.5E-07 56.2 4.7 31 38-68 398-433 (511)
479 3clv_A RAB5 protein, putative; 96.1 0.0032 1.1E-07 49.2 3.3 22 38-59 10-31 (208)
480 2ius_A DNA translocase FTSK; n 96.1 0.0043 1.5E-07 56.3 4.5 24 35-58 167-190 (512)
481 2fn4_A P23, RAS-related protei 96.1 0.0029 9.8E-08 48.5 2.9 22 38-59 12-33 (181)
482 3ld9_A DTMP kinase, thymidylat 96.1 0.0029 9.9E-08 51.1 3.0 33 38-70 24-61 (223)
483 2ocp_A DGK, deoxyguanosine kin 96.1 0.0023 8E-08 52.2 2.5 24 38-61 5-28 (241)
484 3pqc_A Probable GTP-binding pr 96.1 0.0027 9.3E-08 49.4 2.8 24 36-59 24-47 (195)
485 3iby_A Ferrous iron transport 96.1 0.0024 8.2E-08 52.8 2.5 23 36-58 2-24 (256)
486 2hxs_A RAB-26, RAS-related pro 96.1 0.003 1E-07 48.4 2.9 22 38-59 9-30 (178)
487 1ega_A Protein (GTP-binding pr 96.1 0.0026 9E-08 53.9 2.7 22 38-59 11-32 (301)
488 2y8e_A RAB-protein 6, GH09086P 96.1 0.003 1E-07 48.3 2.9 22 38-59 17-38 (179)
489 1m2o_B GTP-binding protein SAR 96.1 0.0032 1.1E-07 49.2 2.9 22 37-58 25-46 (190)
490 3ihw_A Centg3; RAS, centaurin, 96.1 0.0038 1.3E-07 48.5 3.3 22 38-59 23-44 (184)
491 4dkx_A RAS-related protein RAB 96.0 0.012 3.9E-07 47.3 6.2 22 38-59 16-37 (216)
492 1j8m_F SRP54, signal recogniti 96.0 0.0038 1.3E-07 52.7 3.4 37 38-75 101-140 (297)
493 2zts_A Putative uncharacterize 96.0 0.0033 1.1E-07 51.2 2.8 24 32-57 29-52 (251)
494 4djt_A GTP-binding nuclear pro 96.0 0.0034 1.2E-07 50.1 2.8 21 38-58 14-34 (218)
495 1m8p_A Sulfate adenylyltransfe 96.0 0.0066 2.2E-07 56.1 4.9 30 38-67 399-432 (573)
496 1f2t_B RAD50 ABC-ATPase; DNA d 95.9 5E-05 1.7E-09 57.5 -7.7 64 147-211 55-133 (148)
497 3h1t_A Type I site-specific re 95.9 0.025 8.7E-07 52.3 8.9 37 21-58 185-221 (590)
498 2cxx_A Probable GTP-binding pr 95.9 0.0028 9.6E-08 49.1 2.0 23 37-59 3-25 (190)
499 3t1o_A Gliding protein MGLA; G 95.9 0.0047 1.6E-07 48.1 3.3 22 38-59 17-38 (198)
500 3b1v_A Ferrous iron uptake tra 95.9 0.0035 1.2E-07 52.3 2.5 21 38-58 6-26 (272)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.3e-41 Score=299.63 Aligned_cols=275 Identities=43% Similarity=0.745 Sum_probs=247.2
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHH-hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-------------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLL-KEGDFPHLLFYGPSGAGKKTRIMALLKELY------------------- 60 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~------------------- 60 (287)
||+|++||||++|++++|+..+.+.++.++ ..|..||++|+||||+||||+++++++.+.
T Consensus 1 m~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp ---CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred CCcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 889999999999999999999999999999 888888999999999999999999998421
Q ss_pred ------------------------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHh
Q psy2281 61 ------------------------------------------------------GPVIILNETDHLTREAQQALRRTMEK 86 (287)
Q Consensus 61 ------------------------------------------------------~~~i~ide~d~l~~~~~~~l~~~i~~ 86 (287)
+.++++||++.++...++.+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 81 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 01788999999999999999999999
Q ss_pred ccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281 87 YITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEAS 165 (287)
Q Consensus 87 ~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~al~~l~~~ 165 (287)
+++++.++++++..+.+.++++|||..++|++++.+++.+++..+++++|+.++ +++.+.+++.++|++|++++.++.+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred hhcCC-CcccccCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hCChHHHHH
Q psy2281 166 KVQQY-PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSDLKSK 242 (287)
Q Consensus 166 ~~~de-p~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~ 242 (287)
..... +++..+......+.+.++++.+.++.......+..+.+.+++++..|+++..++.+++.++.+ +++...+.+
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l~~ 320 (354)
T 1sxj_E 241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSS 320 (354)
T ss_dssp HHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHH
T ss_pred HHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 88765 566555555566777888999988887777888889999999999999999999999998887 789999999
Q ss_pred HHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 243 ~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
+++.+++++++++.|.++.+|||.++++++..+
T Consensus 321 ~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 321 IIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998754
No 2
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.5e-38 Score=274.32 Aligned_cols=272 Identities=27% Similarity=0.434 Sum_probs=230.8
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------------------- 61 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------- 61 (287)
.+|++||||++|++++|+..+++.++..+++|+.||++|+||||+||||+++++++.+.+
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDV 92 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHH
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHH
Confidence 489999999999999999999999999999999999999999999999999999987521
Q ss_pred -------------------CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281 62 -------------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122 (287)
Q Consensus 62 -------------------~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~ 122 (287)
.++++||+|.++..++++|++.++.++.++.++++++....+.++++|||..+.|.+++.+
T Consensus 93 ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~ 172 (340)
T 1sxj_C 93 VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQE 172 (340)
T ss_dssp HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHH
T ss_pred HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHH
Confidence 1889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-----Cccccc--CccCccHHHHHHHHHHHHH
Q psy2281 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-----PFQIDQ--QIVEPDWKIYIRDTAKLII 195 (287)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-----p~~~~d--~~~~~~~~~~i~~l~~~i~ 195 (287)
++.+++..+++.+++.+++++.+.++++|+|++|++++.++.+..... +++..+ ..........+.++.+.+.
T Consensus 173 ~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~ 252 (340)
T 1sxj_C 173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSIL 252 (340)
T ss_dssp HHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999988898899999999999999999999999988776533 222211 1111122345666666665
Q ss_pred hccChhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH-hCC-hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHH
Q psy2281 196 SEQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCD-SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~ 272 (287)
.. ++..+.+.+.+++. .|+++..++..+...+.+ .++ ...+..+++.+++++.+++.|+++.++||.++++++
T Consensus 253 ~~----~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~ 328 (340)
T 1sxj_C 253 ED----DWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIK 328 (340)
T ss_dssp TS----CHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 42 34455566667776 899999999988777654 466 788999999999999999999999999999999998
Q ss_pred HHHHH
Q psy2281 273 AMYLQ 277 (287)
Q Consensus 273 ~~~~~ 277 (287)
..++.
T Consensus 329 ~~~~~ 333 (340)
T 1sxj_C 329 ASFEN 333 (340)
T ss_dssp HHCCC
T ss_pred HHhhh
Confidence 76554
No 3
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=1.9e-36 Score=263.67 Aligned_cols=265 Identities=21% Similarity=0.340 Sum_probs=220.1
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
.+|++||||++|++++|+..++..+..++..|..|+ ++++||||+||||+++++++.+..+
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~ 93 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPL 93 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHH
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHH
Confidence 389999999999999999999999999999999888 6788889999999999999887432
Q ss_pred --------------EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHH----
Q psy2281 63 --------------VIILNETDHLT-REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE---- 123 (287)
Q Consensus 63 --------------~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~---- 123 (287)
+++|||+|.++ .+.++.|++.++.++.++.+|++++....+.++++|||.++.|++|+.++
T Consensus 94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 173 (324)
T 3u61_B 94 TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEM 173 (324)
T ss_dssp HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHH
T ss_pred HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHH
Confidence 89999999999 88999999999998888999999999999999999999999999999877
Q ss_pred ---HHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccC
Q psy2281 124 ---IVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS 199 (287)
Q Consensus 124 ---~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~ 199 (287)
+.+++..++..+++.+++ ++.+.+++.++||+|++++.++.+. ..++++..+........+.+.++.+.+...
T Consensus 174 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~~-- 250 (324)
T 3u61_B 174 MKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKNK-- 250 (324)
T ss_dssp HHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC------------CHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHcC--
Confidence 455667777888999888 9999999999999999999999988 334443332111111112344555544332
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 200 PKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+...+...+++++. +|..++.+++.++.+.++...+.++++.+++.+++++.|.++.+|||.|+++++..
T Consensus 251 --~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 320 (324)
T 3u61_B 251 --DVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACE 320 (324)
T ss_dssp --CHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 44455556666655 89999999999999999999999999999999999999999999999999999875
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=2.2e-34 Score=249.60 Aligned_cols=270 Identities=30% Similarity=0.515 Sum_probs=228.5
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
+.+|++||||++|++++|+...++.+...+..+..||++|+||+|+|||++++++++.+.+.
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence 35899999999999999999999999999999998889999999999999999999875211
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH 121 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~ 121 (287)
++++||+|.++...++.|++.++.++.++.++++++..+.+.+++++||..+.|.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~ 163 (319)
T 2chq_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163 (319)
T ss_dssp TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCH
T ss_pred HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCH
Confidence 89999999999999999999999988888999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccC
Q psy2281 122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQS 199 (287)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~ 199 (287)
+++..++...++..|+.+++++.+.+++.++|++|++++.++.+...++.++..+ ..........+.++.+.+...
T Consensus 164 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~-- 241 (319)
T 2chq_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKG-- 241 (319)
T ss_dssp HHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHhC--
Confidence 9999999999999999999999999999999999999999999887755444322 111122233566666666543
Q ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 200 PKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 200 ~~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
+.....+.+.+++. .|.++..++..+...+.+ .++...+.+++..+++++.+++.|+++.+++|.++++++..
T Consensus 242 --~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 242 --NFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL 316 (319)
T ss_dssp --CHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33444555666766 899999999888777654 47888899999999999999999999999999999998754
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.7e-34 Score=247.79 Aligned_cols=270 Identities=30% Similarity=0.488 Sum_probs=228.1
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.+|++||+|.+|++++|+..+++.+...+..|..||++|+||+|+||||+++++++.+.+.
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 92 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV 92 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH
Confidence 4899999999999999999999999999999998899999999999999999998874211
Q ss_pred --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281 63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122 (287)
Q Consensus 63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~ 122 (287)
++++||++.++...++.|++.++.++.++.++++++..+.+.+++++||..+.|++++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~ 172 (327)
T 1iqp_A 93 IREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 172 (327)
T ss_dssp THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHH
T ss_pred HHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHH
Confidence 899999999999999999999999888889999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccCh
Q psy2281 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSP 200 (287)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~ 200 (287)
++..++..+++..|+.+++++.+.+++.++|++|.+++.++.+....+.++..+ ..........++++.+.++.. +.
T Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~-~~ 251 (327)
T 1iqp_A 173 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKG-NF 251 (327)
T ss_dssp HHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcC-CH
Confidence 999999999999998889999999999999999999999998876654433222 111122234556666655443 33
Q ss_pred hHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281 201 KKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275 (287)
Q Consensus 201 ~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~ 275 (287)
....+.+.+++ ..|.++..++..+...+.+ .++...+..++..+++++.+++.|+++.+++|.++++++...
T Consensus 252 ---~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 325 (327)
T 1iqp_A 252 ---LKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIG 325 (327)
T ss_dssp ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 33444556666 7799999999988877765 588899999999999999999999999999999999987653
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.2e-33 Score=248.42 Aligned_cols=268 Identities=27% Similarity=0.446 Sum_probs=223.1
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------------------- 61 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------- 61 (287)
.+|++||||++|++++|+.++++.+...+..|..+|++|+||||+||||+++++++.+.+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS 104 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH
Confidence 389999999999999999999999999999998888999999999999999999877421
Q ss_pred ----------------------------C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhccc
Q psy2281 62 ----------------------------P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC 111 (287)
Q Consensus 62 ----------------------------~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~ 111 (287)
. ++++||++.++...++.|++.++.++++.+++++++....+.+++++||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 105 IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 0 7889999999999999999999998888899999998889999999999
Q ss_pred ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC------CcccccC--ccCccH
Q psy2281 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY------PFQIDQQ--IVEPDW 183 (287)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de------p~~~~d~--~~~~~~ 183 (287)
..+.|.+++.+++..++..++...++.+++++.+.++++++|++|.+++.++.+....+ .++..+. ......
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999998776532 2222110 000111
Q ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHhhHHhcCCChH
Q psy2281 184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRIHKGSKPI 261 (287)
Q Consensus 184 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 261 (287)
.+.+.++.+.+... +.......+.+++..|.++..++..+..++.. .++...+..++..+++.+.+++.|.++.
T Consensus 265 ~~~~~~l~~~~~~~----~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~ 340 (353)
T 1sxj_D 265 HDILIEIVEKVKSG----DFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEH 340 (353)
T ss_dssp SHHHHHHHHHHHSC----CHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 12344454444322 23444455667788899999999988888765 5788899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2281 262 FHIEAYVASFMA 273 (287)
Q Consensus 262 ~~l~~~i~~~~~ 273 (287)
++++.++++++.
T Consensus 341 l~l~~~~~~~~~ 352 (353)
T 1sxj_D 341 IQLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.2e-31 Score=232.63 Aligned_cols=265 Identities=23% Similarity=0.347 Sum_probs=219.5
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
.+|.+||+|..+++++|+...++.+...+..+..||++|+||+|+||||+++++++.+.+.
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 88 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV 88 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH
Confidence 3899999999999999999999999999999998899999999999999999998764110
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH 121 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~ 121 (287)
+++|||++.++...++.|++.++.++.++.++++++..+.+.++++|||..+.|++++.
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~ 168 (323)
T 1sxj_B 89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 168 (323)
T ss_dssp HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred HHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCH
Confidence 89999999999999999999999988889999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHH----HHHHHHHhc
Q psy2281 122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIR----DTAKLIISE 197 (287)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~----~l~~~i~~~ 197 (287)
+++.+++...++..|+.+++++.+.+++.++|+.|++++.++.+....+.++. ..+.+.+. .-..+++..
T Consensus 169 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~------~~v~~~~~~~~~~~i~~~~~~ 242 (323)
T 1sxj_B 169 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNA------DNVFKIVDSPHPLIVKKMLLA 242 (323)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCH------HHHHHHHTSCCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCH------HHHHHHHCCCCHHHHHHHHhc
Confidence 99999999999999998999999999999999999999999988754332221 11111111 011112222
Q ss_pred cChhHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH-h-CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281 198 QSPKKLLEVRTRLYE-LLVHSIPVNVLFKYLLEGLLA-N-CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~ 274 (287)
.+...+...+.. ++..|.++..+...+..++.+ . ++...+..+++.+.+.+.+++.|.++.+++|.++.+++..
T Consensus 243 ---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~ 319 (323)
T 1sxj_B 243 ---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKL 319 (323)
T ss_dssp ---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhh
Confidence 334445555565 777899999998887765544 1 7888999999999999999999999999999999998765
Q ss_pred H
Q psy2281 275 Y 275 (287)
Q Consensus 275 ~ 275 (287)
.
T Consensus 320 ~ 320 (323)
T 1sxj_B 320 N 320 (323)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.97 E-value=2.4e-28 Score=216.16 Aligned_cols=268 Identities=19% Similarity=0.212 Sum_probs=210.0
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------- 61 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------- 61 (287)
.+|.+||||++|++++|+....+.+...+..|..+| ++|+||+|+||||+++++++.+.+
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 579999999999999999999999999999999888 899999999999999999987632
Q ss_pred -----C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 62 -----P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 62 -----~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
+ +++|||+|.++...++.|++.++.++.++.++++++..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0 899999999999999999999999888889999999888899
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP 181 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~ 181 (287)
+++++||..+.|++++.+++..++...++..|+.+++++.+.+++.++|+.|.+.+.++++..+.. +++..+ .....
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTTC
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999988776532 222211 00111
Q ss_pred cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------------------HHh
Q psy2281 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL---------------------------LAN 234 (287)
Q Consensus 182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---------------------------~~~ 234 (287)
.....+.++.+.+... +...+ ...+..+...|.++..++..+..++ .+.
T Consensus 244 ~~~~~~~~l~~~~~~~-~~~~~---~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 319 (373)
T 1jr3_A 244 LDDDQALSLVEAMVEA-NGERV---MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 (373)
T ss_dssp CCHHHHHHHHHHHHHT-CHHHH---HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CHHHH---HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHHh
Confidence 1123344555554433 22222 2233344455666655444333222 223
Q ss_pred CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281 235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273 (287)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~ 273 (287)
++......++..+.+.+.+++.+.++.+.+|.++.++..
T Consensus 320 ~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~ 358 (373)
T 1jr3_A 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 555667778888999999999999999999999988754
No 9
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.97 E-value=2.9e-30 Score=232.68 Aligned_cols=251 Identities=18% Similarity=0.228 Sum_probs=188.0
Q ss_pred CccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
.+|+++|||++|++++|+.+++ ..+...+..|..++++|+|||||||||+++++++.....
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~ 93 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIRE 93 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHH
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHH
Confidence 4899999999999999999998 889999999998889999999999999999999987543
Q ss_pred ---------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC--CCCcHHHhcccceeecCCCCHHHHH
Q psy2281 63 ---------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM--SQVIPAIRSRCLCIRIPAPTHEEIV 125 (287)
Q Consensus 63 ---------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~--~~l~~~l~sr~~~~~~~~~~~~~~~ 125 (287)
+++|||++.++...++.|++.++. ....+|.+++.. ..+.+++.|||.++.|.+++.+++.
T Consensus 94 ~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~ 171 (447)
T 3pvs_A 94 AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIE 171 (447)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHH
T ss_pred HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHH
Confidence 999999999999889999999996 345666666543 3688999999999999999999999
Q ss_pred HHHHHHHHH-------hCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc-cccCccCccHHHHHHHHHHHHHhc
Q psy2281 126 SVLTNICKK-------EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQQIVEPDWKIYIRDTAKLIISE 197 (287)
Q Consensus 126 ~~l~~~~~~-------~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~-~~d~~~~~~~~~~i~~l~~~i~~~ 197 (287)
.++...+.. .++.+++++.+.+++.++||+|++++.++.+........ +...++ .+.+.++ +..
T Consensus 172 ~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It----~e~v~~~----l~~ 243 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK----PELLTEI----AGE 243 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECC----HHHHHHH----HTC
T ss_pred HHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccC----HHHHHHH----Hhh
Confidence 999999987 556689999999999999999999999999887654210 111111 1222222 221
Q ss_pred cChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHH
Q psy2281 198 QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ 277 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~ 277 (287)
......+-.+.+|++++ .+.+.+ +....+.+.+|..+|..++.++. ++++.+.++++
T Consensus 244 -~~~~~dk~gd~~yd~is--------------al~ksi----rgsd~daAl~~la~ml~~Gedp~----~i~rrl~~~a~ 300 (447)
T 3pvs_A 244 -RSARFDNKGDRFYDLIS--------------ALHKSV----RGSAPDAALYWYARIITAGGDPL----YVARRCLAIAS 300 (447)
T ss_dssp -CCCC---CCHHHHHHHH--------------HHHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHH
T ss_pred -hhhccCCccchHHHHHH--------------HHHHHH----hCCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence 11112222333444332 133333 34445567788889999998887 89999999999
Q ss_pred HHHhhhhc
Q psy2281 278 FMEDTLSN 285 (287)
Q Consensus 278 ~~~~~~~~ 285 (287)
+|||+||.
T Consensus 301 edig~a~p 308 (447)
T 3pvs_A 301 EDVGNADP 308 (447)
T ss_dssp HTTGGGCT
T ss_pred hcccCCCh
Confidence 99999984
No 10
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.94 E-value=5.3e-26 Score=195.24 Aligned_cols=239 Identities=12% Similarity=0.144 Sum_probs=181.7
Q ss_pred CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh------CCC-----------------------------
Q psy2281 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL------YGP----------------------------- 62 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~------~~~----------------------------- 62 (287)
||+++++.|+..+++|+.|+++|+||+|+||||+++++++.. .++
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~ 80 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 80 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcccc
Confidence 577888999999999985569999999999999999998852 111
Q ss_pred ----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC
Q psy2281 63 ----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138 (287)
Q Consensus 63 ----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (287)
+++|||+|.++..++++|++++|.+++++.|+++++.++++.++++|| +++|++++.+++.+++.+.+ ++
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~---~i- 154 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI---GD- 154 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH---TT-
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh---CC-
Confidence 999999999999999999999999999999999999999999999999 89999999999999999887 44
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHHh-----------hcCCCcccccCccCccHHH--HHHHHHHHHHhccChhHHHH
Q psy2281 139 IPPEFALRLAQQSDRNLRRAILMCEASK-----------VQQYPFQIDQQIVEPDWKI--YIRDTAKLIISEQSPKKLLE 205 (287)
Q Consensus 139 ~~~~~~~~l~~~s~G~~r~al~~l~~~~-----------~~dep~~~~d~~~~~~~~~--~i~~l~~~i~~~~~~~~~~~ 205 (287)
+++++ .++.|++|+|++.++... .+. .-...+........+ .++++.+.+... +...+.
T Consensus 155 -~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~~~~~~~~v~~l~~ai~~~-~~~~a~- 226 (305)
T 2gno_A 155 -LWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLE-TEKLLKKVLSKGLEGYLACRELLERFSKV-ESKEFF- 226 (305)
T ss_dssp -HHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHTTTTTCSHHHHHHHHHHHHHHHHHS-CGGGHH-
T ss_pred -CHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHccCCcchHHHHHHHHHHHCC-CHHHHH-
Confidence 55544 668999999988775211 111 001112222233333 578888887665 333333
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhc---CCChHHHHHHHHHHHHH
Q psy2281 206 VRTRLYELLV--HSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHK---GSKPIFHIEAYVASFMA 273 (287)
Q Consensus 206 ~~~~~~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---g~~~~~~l~~~i~~~~~ 273 (287)
+.+.+++. .|.++..++..++..+... ....+...++.++..+.++.. |.++.+||+.++++++.
T Consensus 227 --~~~~~l~~~~~g~~~~~~i~~~~r~l~~~-~~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~ 296 (305)
T 2gno_A 227 --ALFDQVTNTITGKDAFLLIQRLTRIILHE-NTWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRE 296 (305)
T ss_dssp --HHHHHHHHHSCTHHHHHHHHHHHHHHHHT-SCCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhcCCCHHHHHHHHHHHHHhh-chhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33344554 7888877777777766642 233346777899999999999 99999999999999874
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.93 E-value=5.6e-25 Score=180.16 Aligned_cols=169 Identities=37% Similarity=0.654 Sum_probs=154.3
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
+.+|.++|+|..+++++|+....+.+...+..+..++++|+||+|+|||++++.+++.+...
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence 46899999999999999999999999999988877779999999999999999998864110
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH 121 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~ 121 (287)
+++|||++.+....++.+++.++....+..++++++..+.+.+++.+|+..+.|++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~ 163 (226)
T 2chg_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK 163 (226)
T ss_dssp HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCH
Confidence 89999999999888899999999887788899999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q psy2281 122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d 169 (287)
++...++...+...++.+++++.+.+++.++|+.|.+++.++.+....
T Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (226)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 999999999999999988999999999999999999999999988765
No 12
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.93 E-value=1.7e-23 Score=182.56 Aligned_cols=238 Identities=17% Similarity=0.171 Sum_probs=178.0
Q ss_pred cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-----------------------------------C
Q psy2281 19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-----------------------------------P 62 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-----------------------------------~ 62 (287)
+.+..+.+...+++|+.|| ++|+||+|+|||++++++++.+.+ .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 5677888999999999999 999999999999999999987531 1
Q ss_pred ------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCC
Q psy2281 63 ------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPA 118 (287)
Q Consensus 63 ------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 118 (287)
+++|||+|.++.+++++|+++++.++.++.++++++..+++.++++|||+.+.|++
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~ 166 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP 166 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHH-------
Q psy2281 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA------- 191 (287)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~------- 191 (287)
++.+++.+++...+ .+++++.+.+++.++|++|+|++.++....... ..+.+.+..+.
T Consensus 167 ~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 231 (334)
T 1a5t_A 167 PPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQAR----------ETLCQALAYSVPSGDWYS 231 (334)
T ss_dssp CCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHH----------HHHHHHHHHHHHHCCCGG
T ss_pred CCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHH----------HHHHHHHHHHHhChHHHH
Confidence 99999999988764 458899999999999999999988876442110 01111111111
Q ss_pred --HHHHhccChhHH-HHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHh--cCCCh
Q psy2281 192 --KLIISEQSPKKL-LEVRTRLYELLVHS------IPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIH--KGSKP 260 (287)
Q Consensus 192 --~~i~~~~~~~~~-~~~~~~~~~l~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~ 260 (287)
+.+ ...+...+ ..+...+.+++..+ +.++. . .......+.++...+..+++.+.+.+.+++ .+.++
T Consensus 232 ~~~~l-~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~-~-~~~~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~~~n~ 308 (334)
T 1a5t_A 232 LLAAL-NHEQAPARLHWLATLLMDALKRHHGAAQVTNVDV-P-GLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINR 308 (334)
T ss_dssp GHHHH-CSTTHHHHHHHHHHHHHHHTCC------CCCTTC-H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHH-hcccHHHHHHHHHHHHHHHHHhccCCccccCHHH-H-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 111 11111111 22222223333221 11211 1 222334457888889999999999999999 89999
Q ss_pred HHHHHHHHHHHHHH
Q psy2281 261 IFHIEAYVASFMAM 274 (287)
Q Consensus 261 ~~~l~~~i~~~~~~ 274 (287)
.+++|.++.++...
T Consensus 309 ~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 309 ELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
No 13
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=3.6e-24 Score=197.09 Aligned_cols=171 Identities=28% Similarity=0.410 Sum_probs=141.7
Q ss_pred CCccccccCCCCCCCccCcHHHHHHHHHHHhc-----------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-
Q psy2281 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62 (287)
Q Consensus 1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~- 62 (287)
|.+|++||||++|++++|+...++.+..++.. +..++++|+||+|+||||+++++++.+...
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 46899999999999999999999999888854 122349999999999999999999865211
Q ss_pred ---------------------------------------------EEEEeCCCCCCHHHH---HHHHHHHHhccCCcEEE
Q psy2281 63 ---------------------------------------------VIILNETDHLTREAQ---QALRRTMEKYITTCRLI 94 (287)
Q Consensus 63 ---------------------------------------------~i~ide~d~l~~~~~---~~l~~~i~~~~~~~~~i 94 (287)
+++|||+|.+....+ ..+.+.++.. ...++
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iI 183 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLI 183 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEE
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEE
Confidence 789999998876433 6677777653 45577
Q ss_pred EEeCCCC-CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc
Q psy2281 95 LCANSMS-QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173 (287)
Q Consensus 95 ~~~~~~~-~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~ 173 (287)
++++... ...+++++||..+.|++++.+++.+++..++..+++.+++++++.+++.++||+|++++.++.+.....+++
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It 263 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTIN 263 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCC
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCc
Confidence 7777654 455678999999999999999999999999999999999999999999999999999999998877555443
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.91 E-value=6.4e-23 Score=169.96 Aligned_cols=168 Identities=26% Similarity=0.351 Sum_probs=151.8
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------- 61 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------- 61 (287)
.+|.++|+|..+++++|+....+.+...+..+..++ ++|+||+|+||||+++.+++.+..
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999998888766 899999999999999999876521
Q ss_pred -----C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281 62 -----P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104 (287)
Q Consensus 62 -----~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~ 104 (287)
. ++++||++.+....++.+.+.++..+....++++++..+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0 899999999998889999999998777788899988888899
Q ss_pred HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q psy2281 105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d 169 (287)
+++.+|+..+.+++++.+++.+++...+...+..++++..+.+++.++|+.|.+.+.++.++...
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~ 235 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG 235 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999989888999999999999999999999998887554
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=7.3e-21 Score=166.11 Aligned_cols=164 Identities=21% Similarity=0.301 Sum_probs=138.4
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc-----CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----GDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
.|.+||+|.+|++++|+......+..++.. ...++++|+||+|||||++++++++....+
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDL 97 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHH
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHH
Confidence 699999999999999999998888888753 333459999999999999999999887543
Q ss_pred -----------EEEEeCCCCCCHHHHHHHHHHHHhccC------------------CcEEEEEeCCCCCCcHHHhccc-c
Q psy2281 63 -----------VIILNETDHLTREAQQALRRTMEKYIT------------------TCRLILCANSMSQVIPAIRSRC-L 112 (287)
Q Consensus 63 -----------~i~ide~d~l~~~~~~~l~~~i~~~~~------------------~~~~i~~~~~~~~l~~~l~sr~-~ 112 (287)
++++||++.+....+..|++.++...- ...++.++|....+.+++++|| .
T Consensus 98 ~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~ 177 (338)
T 3pfi_A 98 AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGM 177 (338)
T ss_dssp HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCE
Confidence 899999999999999999988876321 2467777887788999999999 6
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~ 166 (287)
.+.|++++.+++..++...+...++.+++++.+.+++.++|+.|.+.+.++.+.
T Consensus 178 ~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 178 QFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred EeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 899999999999999999999999888999999999999999999998888754
No 16
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.87 E-value=1.6e-21 Score=170.66 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=174.4
Q ss_pred HHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhC--C--C-----------------------------EEEEeCCCC
Q psy2281 26 LRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELY--G--P-----------------------------VIILNETDH 71 (287)
Q Consensus 26 l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~--~--~-----------------------------~i~ide~d~ 71 (287)
+...++ ++.+| ++|+||+|+||++.++.+++.+. + + +|+|||++.
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 334445 45666 99999999999999999877542 1 0 999999999
Q ss_pred -CCHHHHHHHHHHHHhccCCcEEEEEeCCC------CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2281 72 -LTREAQQALRRTMEKYITTCRLILCANSM------SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144 (287)
Q Consensus 72 -l~~~~~~~l~~~i~~~~~~~~~i~~~~~~------~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 144 (287)
++.+.+++|+++++.+++++.++++++.. .++.++++|||.++.|.+++.+++..++..+++.+|+.+++++.
T Consensus 88 kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~ 167 (343)
T 1jr3_D 88 GPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN 167 (343)
T ss_dssp CCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHH
T ss_pred CCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888999999999999999999988764 34888999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhcC--CCccccc------CccCccHHHHHHHHHHHHHhc----------------cCh
Q psy2281 145 LRLAQQSDRNLRRAILMCEASKVQQ--YPFQIDQ------QIVEPDWKIYIRDTAKLIISE----------------QSP 200 (287)
Q Consensus 145 ~~l~~~s~G~~r~al~~l~~~~~~d--ep~~~~d------~~~~~~~~~~i~~l~~~i~~~----------------~~~ 200 (287)
+.+++.++||++.+.+.++++.++. ++++..+ ...... ++++.+.+... .++
T Consensus 168 ~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~----if~l~~ai~~~d~~~al~~l~~l~~~g~~~ 243 (343)
T 1jr3_D 168 QVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFT----PFHWVDALLMGKSKRALHILQQLRLEGSEP 243 (343)
T ss_dssp HHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCC----HHHHHHHHTTSCHHHHHHHHTSSTTTTCCH
T ss_pred HHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCC----HHHHHHHHHCCCHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999998863 3333222 011122 23333332221 111
Q ss_pred hHHH-HHHHHHHHHH--h----cCCCHHHHHHH---------HHHHHHHhCChHHHHHHHHHHHHHhhHHhcCC--ChHH
Q psy2281 201 KKLL-EVRTRLYELL--V----HSIPVNVLFKY---------LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS--KPIF 262 (287)
Q Consensus 201 ~~~~-~~~~~~~~l~--~----~~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~~~~ 262 (287)
..+. .+...+..++ . .| ++..+.+. ......+.++......++..+.+.+.+++.|. ++++
T Consensus 244 ~~il~~l~~~~r~l~~~~~~~~~g-~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~ 322 (343)
T 1jr3_D 244 VILLRTLQRELLLLVNLKRQSAHT-PLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWA 322 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSS-CHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 1111 1111122221 1 23 44444432 11222346777888899999999999999874 5678
Q ss_pred HHHHHHHHHHH
Q psy2281 263 HIEAYVASFMA 273 (287)
Q Consensus 263 ~l~~~i~~~~~ 273 (287)
.||.++.+++.
T Consensus 323 ~le~l~l~l~~ 333 (343)
T 1jr3_D 323 ELEGLSLLLCH 333 (343)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHcC
Confidence 99999988753
No 17
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.86 E-value=1.6e-20 Score=163.65 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=135.3
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhcC----CC-CcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEG----DF-PHLLFYGPSGAGKKTRIMALLKELYGP---------------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g----~~-~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------- 62 (287)
|+++++|++|++++|+..+++.++..+..| +. .+++|+||||+||||+++++++.+...
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 499999999999999999999998888654 22 349999999999999999999987321
Q ss_pred ----------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccc-e
Q psy2281 63 ----------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCL-C 113 (287)
Q Consensus 63 ----------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~-~ 113 (287)
++++||++.+....++.+...++... +...++..++....+..++++||. .
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred HHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce
Confidence 89999999998877777766665421 123455566667789999999996 5
Q ss_pred eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q psy2281 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV 167 (287)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~ 167 (287)
+.|.+++.+++.+++++.++..++.+++++...+++.+.|+.|.+++.+..+..
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 789999999999999999998999999999999999999999999998886643
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=8.8e-20 Score=158.17 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=139.0
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc----C-CCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE----G-DFPHLLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~----g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
+|.+||+|.+|++++|+......+...+.. + ..++++|+||+|+|||++++++++....+
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL 80 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHH
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHH
Confidence 478999999999999999888877777642 2 22349999999999999999998876432
Q ss_pred ------------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhccc-
Q psy2281 63 ------------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRC- 111 (287)
Q Consensus 63 ------------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~- 111 (287)
++++||++.+....+..+++.++... .+..++.+++....+.+++.+||
T Consensus 81 ~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~ 160 (324)
T 1hqc_A 81 AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG 160 (324)
T ss_dssp HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCS
T ss_pred HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhccc
Confidence 99999999999988998988888642 23567888888888889999999
Q ss_pred ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q psy2281 112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d 169 (287)
.++.+.+++.+++..++...+...++.+++++.+.+++.++|+.|.+.+.+..+....
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999889889999999999999999999998888776543
No 19
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=3.8e-20 Score=163.33 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=138.6
Q ss_pred cccccCCCC-CCCccCcHHHHHH---HHHHHhcCCCC--cEEEeCCCCCcHHHHHHHHHHHhCC----------------
Q psy2281 4 WVDKYRPNN-LQKLDFHCKQANH---LRNLLKEGDFP--HLLFYGPSGAGKKTRIMALLKELYG---------------- 61 (287)
Q Consensus 4 w~~k~~p~~-~~~~~~~~~~~~~---l~~~~~~g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~---------------- 61 (287)
+.++++|.. |++++|+...... +...+..|..+ +++|+||||+|||++++++++.+..
T Consensus 33 l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 33 LDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 567899999 9999999988665 45555667665 4999999999999999999987642
Q ss_pred ------------------------------------------------------------------------------CE
Q psy2281 62 ------------------------------------------------------------------------------PV 63 (287)
Q Consensus 62 ------------------------------------------------------------------------------~~ 63 (287)
.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 18
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC------------CCCCCcHHHhcccceeecCCCCHHHHHHHHHHH
Q psy2281 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCAN------------SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131 (287)
Q Consensus 64 i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~------------~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~ 131 (287)
++|||++.+..+.++.|++.++..... .+++.++ ....+.+++++||..+.|++++.+++..++...
T Consensus 193 l~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 193 LFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp EEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHH
T ss_pred EEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHH
Confidence 999999999999999999999876543 3444443 145688999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhhc
Q psy2281 132 CKKEGLTIPPEFALRLAQQSD-RNLRRAILMCEASKVQ 168 (287)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~s~-G~~r~al~~l~~~~~~ 168 (287)
+...++.+++++++.+++++. |+.|.+++.+..+...
T Consensus 272 ~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~ 309 (368)
T 3uk6_A 272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLV 309 (368)
T ss_dssp HHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999887654
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.83 E-value=1.8e-19 Score=149.25 Aligned_cols=166 Identities=16% Similarity=0.226 Sum_probs=136.8
Q ss_pred ccccccCC-CCCCCccC---cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q psy2281 3 LWVDKYRP-NNLQKLDF---HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------------- 61 (287)
Q Consensus 3 ~w~~k~~p-~~~~~~~~---~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------------- 61 (287)
+|..+++| .+|+++++ +..+...+..+...+..++++|+||+|+||||+++++++....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS 95 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 58889998 78999986 3477888888887655555999999999999999999887641
Q ss_pred ----------CEEEEeCCCCCCHHH--HHHHHHHHHhccCCc--EEEEEeCCCC----CCcHHHhccc---ceeecCCCC
Q psy2281 62 ----------PVIILNETDHLTREA--QQALRRTMEKYITTC--RLILCANSMS----QVIPAIRSRC---LCIRIPAPT 120 (287)
Q Consensus 62 ----------~~i~ide~d~l~~~~--~~~l~~~i~~~~~~~--~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~ 120 (287)
.++++||++.+.... +..+...++...... .++++++... .+.+.+.+|| ..+.|++++
T Consensus 96 ~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~ 175 (242)
T 3bos_A 96 TALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMM 175 (242)
T ss_dssp GGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCC
T ss_pred HHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCC
Confidence 189999999886544 677777777654333 4777776543 3568999999 789999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281 121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168 (287)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~ 168 (287)
.++..+++...++..++.+++++.+.+++.++|++|.+.+.++.+...
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877654
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.82 E-value=3.3e-23 Score=180.31 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=145.1
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCAN 98 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~~ 98 (287)
++.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+. ++......+++.+++++|+..++...+
T Consensus 44 L~~vsl~i~~Gei--~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 44 LNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EEeeEEEEcCCCE--EEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 3444555578999 9999999999999999999998876 788887653 344444455677888999877665556
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
+.+++..++. +...+.++..+++.+.++..|+ ++...+++.++|+|+.|| |+...|+++++||||+
T Consensus 122 V~env~~~~~-------~~~~~~~~~~~~v~~lL~~vgL--~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs 192 (366)
T 3tui_C 122 VFGNVALPLE-------LDNTPKDEVKRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS 192 (366)
T ss_dssp HHHHHHHHHH-------HSCCCHHHHHHHHHHHHHHHTC--GGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred HHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 6677766654 3455677888889999999998 555667788999999988 6777789999999999
Q ss_pred cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++.++ ++++|+.+.+..++|+++.|
T Consensus 193 ~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 193 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 237 (366)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999765 78999999999999988744
No 22
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=4.3e-19 Score=160.89 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=93.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe---------CC----CCCCcHHHhcccceeecCCCCHHHHHHHHH
Q psy2281 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCA---------NS----MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT 129 (287)
Q Consensus 63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~---------~~----~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~ 129 (287)
+++|||++.++.+++++|++.++.++.. .+++.+ +. +..+.++++|||..+.|++++.+++.+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 5789999999999999999999998877 577677 44 567999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q psy2281 130 NICKKEGLTIPPEFALRLAQQS-DRNLRRAILMCEASKV 167 (287)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~ 167 (287)
..++.+++.+++++...++.++ .|+.|.|+..++....
T Consensus 377 ~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~ 415 (456)
T 2c9o_A 377 IRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANL 415 (456)
T ss_dssp HHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999987643
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.80 E-value=1.1e-22 Score=178.06 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=141.7
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+....... .+.+++++|+..+++..++.+
T Consensus 20 ~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~---~r~ig~VfQ~~~l~p~ltV~e 94 (381)
T 3rlf_A 20 KDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA---ERGVGMVFQSYALYPHLSVAE 94 (381)
T ss_dssp EEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG---GSCEEEECTTCCCCTTSCHHH
T ss_pred eeeEEEECCCCE--EEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH---HCCEEEEecCCcCCCCCCHHH
Confidence 344445578998 9999999999999999999998876 788887653211111 244778888877766667778
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
|+..+++ ....+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++|
T Consensus 95 ni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD 165 (381)
T 3rlf_A 95 NMSFGLK-------LAGAKKEVINQRVNQVAEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (381)
T ss_dssp HHTHHHH-------HTTCCHHHHHHHHHHHHHHTTC--GGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 8877765 3456778888899999999888 556667888999999988 7788899999999999999
Q ss_pred CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
......+.+.+.++.++ |+++|+.+.+..++|++..|
T Consensus 166 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl 207 (381)
T 3rlf_A 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999999998765 78999999999999988744
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.79 E-value=9.1e-22 Score=165.45 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC------------CCHHHHHHHHHHHHhccC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH------------LTREAQQALRRTMEKYIT 89 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~------------l~~~~~~~l~~~i~~~~~ 89 (287)
+.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+. .+......+++.+.+++|
T Consensus 23 ~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q 100 (262)
T 1b0u_A 23 KGVSLQARAGDV--ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 100 (262)
T ss_dssp EEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred EeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence 344445578888 9999999999999999999998766 788887553 222222345667888888
Q ss_pred CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHH
Q psy2281 90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCE 163 (287)
Q Consensus 90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~ 163 (287)
+..++...++.+++..+... +...+.++..+.+.++++..|+ ++. ..+.+.++|+|+.|| |+...|
T Consensus 101 ~~~l~~~ltv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 172 (262)
T 1b0u_A 101 HFNLWSHMTVLENVMEAPIQ------VLGLSKHDARERALKYLAKVGI--DERAQGKYPVHLSGGQQQRVSIARALAMEP 172 (262)
T ss_dssp SCCCCTTSCHHHHHHHHHHH------TTCCCHHHHHHHHHHHHHHTTC--CHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CcccCCCCcHHHHHHhhHHH------hcCCCHHHHHHHHHHHHHHcCC--CchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 76554434444555442210 2233455566778888888888 666 677888999999988 667778
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
.++++|||++++|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 173 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 173 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226 (262)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999888764 77999999999999887644
No 25
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.79 E-value=2.1e-22 Score=170.01 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=138.8
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCAN 98 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~~ 98 (287)
++.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+.- .......+++.+++++|++. .++..+
T Consensus 24 L~~isl~i~~Ge~--~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 24 LKGINMNIKRGEV--TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEETTSE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred EEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 3344455578999 9999999999999999999988766 7888886642 33334456677888888752 223345
Q ss_pred CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281 99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ 173 (287)
Q Consensus 99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~ 173 (287)
+.+++..+.. ....+.++..+.+..+++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++
T Consensus 102 v~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts 172 (275)
T 3gfo_A 102 VYQDVSFGAV-------NMKLPEDEIRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172 (275)
T ss_dssp HHHHHHHHHH-------TSCCCHHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 5566655443 2345677788888999999888 455567788999999988 6677789999999999
Q ss_pred cccCccCccHHHHHHHHH-HH----HHhccChhHHHHHHHHHHHH
Q psy2281 174 IDQQIVEPDWKIYIRDTA-KL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 174 ~~d~~~~~~~~~~i~~l~-~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
++|+.....+.+.+.++. +. ++++|+.+.+..++|+++.+
T Consensus 173 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 173 GLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999999987 43 78999999999999987644
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.78 E-value=6.9e-18 Score=150.06 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=130.4
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GD-FPHLLFYGPSGAGKKTRIMALLKELYGP-------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------- 62 (287)
.|+++|+|.+|++++|+..+++.+...+.. +. ..+++|+||+|||||+++++++.....+
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 599999999999999999999888887721 11 2349999999999999999999886533
Q ss_pred --------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhcc----CCcEEEEEeCCCC
Q psy2281 63 --------------------------VIILNETDHLT-----------REAQQALRRTMEKYI----TTCRLILCANSMS 101 (287)
Q Consensus 63 --------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~~----~~~~~i~~~~~~~ 101 (287)
+|+|||+|.+. ...+..++..++... ....+|.++|..+
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 89999999873 233455666666432 2345667777778
Q ss_pred CCcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q psy2281 102 QVIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164 (287)
Q Consensus 102 ~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~ 164 (287)
.+.+++++||. .+.|..|+.++...++...+...+..+++..+..++..+.|..++.+..+-.
T Consensus 264 ~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 264 ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 89999999995 6889999999999999999999888889999999999999988776655543
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=2.7e-18 Score=154.80 Aligned_cols=161 Identities=18% Similarity=0.252 Sum_probs=127.0
Q ss_pred cCCC-CCCCcc-C--cHHHHHHHHHHHhcC-CCCcEEEeCCCCCcHHHHHHHHHHHh-----CC----------------
Q psy2281 8 YRPN-NLQKLD-F--HCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL-----YG---------------- 61 (287)
Q Consensus 8 ~~p~-~~~~~~-~--~~~~~~~l~~~~~~g-~~~~~~l~Gp~G~GKTtl~~~l~~~~-----~~---------------- 61 (287)
..|. +|++++ | +..+...+..+.... ..++++|+||||+||||+++++++.+ ..
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~ 177 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD 177 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 3444 688877 4 444556666666543 34459999999999999999998866 11
Q ss_pred ------------------CEEEEeCCCCCCH--HHHHHHHHHHHhccC-CcEEEEEeCCCC----CCcHHHhccc---ce
Q psy2281 62 ------------------PVIILNETDHLTR--EAQQALRRTMEKYIT-TCRLILCANSMS----QVIPAIRSRC---LC 113 (287)
Q Consensus 62 ------------------~~i~ide~d~l~~--~~~~~l~~~i~~~~~-~~~~i~~~~~~~----~l~~~l~sr~---~~ 113 (287)
.+++|||++.+.. ..+..+...++.... ...++++++... .+.++++||| ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~ 257 (440)
T 2z4s_A 178 SMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLV 257 (440)
T ss_dssp HHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBC
T ss_pred HHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeE
Confidence 1899999998875 567888888776543 345666666543 3789999999 57
Q ss_pred eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168 (287)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~ 168 (287)
+.+.+|+.+++..++...++..++.+++++.++++..++|+.|.+.+.+..+...
T Consensus 258 i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 258 AKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVY 312 (440)
T ss_dssp CBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999988877654
No 28
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.77 E-value=7e-22 Score=165.89 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=131.7
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+.- .......+++.+.+++|+..++...++.
T Consensus 41 ~~vsl~i~~Gei--~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 118 (263)
T 2olj_A 41 KGINVHIREGEV--VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118 (263)
T ss_dssp EEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EeeEEEEcCCCE--EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHH
Confidence 344444578888 9999999999999999999998766 7888875531 1111233456788888876544333444
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++..+.. .+...+.++..+.+.++++..++ ++...+.+.++|+|+.|| |+...|+++++|||++++
T Consensus 119 e~l~~~~~------~~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~L 190 (263)
T 2olj_A 119 NNITLAPM------KVRKWPREKAEAKAMELLDKVGL--KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190 (263)
T ss_dssp HHHHHHHH------HTSCCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred HHHHHHHH------HHcCCCHHHHHHHHHHHHHHCCC--chHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence 55543221 02233455566777888888887 455566788999999888 666668899999999999
Q ss_pred cCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 191 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 999999999999988764 77999999999988887644
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.77 E-value=8.4e-23 Score=177.69 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=136.0
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE-AQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
++.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+..... .....++.+++++|+..++...++
T Consensus 20 L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 20 LNDISLSLDPGEI--LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EEeeEEEEcCCCE--EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 3344445578999 9999999999999999999998877 7888876531100 001123457778887766665666
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+|+..+++ ....+.++..+++.++++..++ ++...+++.++|+|+.|| |+...|+++++|||+++
T Consensus 98 ~eni~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~ 168 (359)
T 3fvq_A 98 YRNIAYGLG-------NGKGRTAQERQRIEAMLELTGI--SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168 (359)
T ss_dssp HHHHHTTST-------TSSCCSHHHHHHHHHHHHHHTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHH-------HcCCChHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 666655543 2234456677788888999888 566677889999999998 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ |+++|+.+.+..++|+++.|
T Consensus 169 LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl 212 (359)
T 3fvq_A 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVM 212 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence 9999888888777777654 78999999999999988744
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=1.2e-17 Score=143.16 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=127.9
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~------- 62 (287)
..|.++++|.+|++++|+..+++.+...+.. +..+ +++|+|||||||||+++++++....+
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 4689999999999999999999888877622 1122 39999999999999999999887532
Q ss_pred ---------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhccC-----CcEEEEEeCC
Q psy2281 63 ---------------------------VIILNETDHLT-----------REAQQALRRTMEKYIT-----TCRLILCANS 99 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~~~-----~~~~i~~~~~ 99 (287)
++++||+|.+. ...+..++..++.... ...++.+++.
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 89999998763 2345566777776543 2456667777
Q ss_pred CCCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281 100 MSQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162 (287)
Q Consensus 100 ~~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l 162 (287)
++.+.+++++|| ..+.++.|+.++...++...++..+..+++...+.+++.+.|..++.+..+
T Consensus 169 ~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 169 PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp GGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 778999999999 467888899999999999999888888899999999999999777655433
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.77 E-value=9.4e-22 Score=172.33 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=131.1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|++ +.|.||||||||||+++|++...++ .|.+|+.+...... ..+.+++++|+..++...++.+
T Consensus 28 ~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 28 NKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---KDRNISMVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGGTEEEEEC------CCCHHH
T ss_pred eeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh---hhCcEEEEecCcccCCCCCHHH
Confidence 334444578888 9999999999999999999998776 78888755311110 1245778888877776667767
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
++..+++ ....+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++|
T Consensus 103 ni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 173 (372)
T 1v43_A 103 NIAFPLK-------IKKFPKDEIDKRVRWAAELLQI--EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173 (372)
T ss_dssp HHHTTCC---------CCCHHHHHHHHHHHHHHTTC--GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred HHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 7655432 2344566777888889998888 555667788999999999 6677789999999999999
Q ss_pred CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
......+.+.+.++.++ |+++|+...+..++|+++.+
T Consensus 174 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 215 (372)
T 1v43_A 174 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 215 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999988764 77999999999999987644
No 32
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.77 E-value=2.3e-21 Score=160.48 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=130.8
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHH-HHHHHhccCCcEEEEEeCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQAL-RRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l-~~~i~~~~~~~~~i~~~~~~ 100 (287)
++..+.+|++ ++|.||||||||||+++|++...+. .|.+++.+. ++......+ ++.+.+++|+..++...++.
T Consensus 24 isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 101 (235)
T 3tif_A 24 VNLNIKEGEF--VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL 101 (235)
T ss_dssp EEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHH
T ss_pred eeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHH
Confidence 3444578888 9999999999999999999998876 788887543 344333333 34588888887655544555
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
+++..+...+. ....+.++..+.+...++..++ .+.. .+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 102 enl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 175 (235)
T 3tif_A 102 ENVELPLIFKY----RGAMSGEERRKRALECLKMAEL--EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWA 175 (235)
T ss_dssp HHHHHHHHTCS----SSCCCHHHHHHHHHHHHHHTTC--CGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhhh----ccCCCHHHHHHHHHHHHHHCCC--ChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 66655443110 1234566777788888888887 4432 56688999999998 66677899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~ 211 (287)
+|+.....+.+.+.++.++ ++++|+.+. ...+|+++
T Consensus 176 LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~ 216 (235)
T 3tif_A 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERII 216 (235)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEE
Confidence 9999999999999998754 789999874 45677654
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.77 E-value=5.2e-22 Score=172.76 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=135.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+..... ..++.+.+++|+..++...++.+
T Consensus 32 ~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 32 RGVSFQIREGEM--VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP---PQKRNVGLVFQNYALFQHMTVYD 106 (355)
T ss_dssp EEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGGSSEEEECGGGCCCTTSCHHH
T ss_pred eeeEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---hhhCcEEEEecCcccCCCCCHHH
Confidence 344444578999 9999999999999999999998776 7888875531100 11345677777766655556667
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
++..+++ ....+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++|
T Consensus 107 ni~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD 177 (355)
T 1z47_A 107 NVSFGLR-------EKRVPKDEMDARVRELLRFMRL--ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177 (355)
T ss_dssp HHHHHHH-------HTTCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSS
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 7766654 2344566777888889998888 555667788999999988 6677789999999999999
Q ss_pred CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
......+.+.+.++.++ |+++|+.+.+..++|+++.+
T Consensus 178 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 219 (355)
T 1z47_A 178 TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVL 219 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999999988754 77999999999999987644
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.76 E-value=7.8e-22 Score=172.23 Aligned_cols=187 Identities=15% Similarity=0.186 Sum_probs=140.1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+...... ..+.+.+++|+..++...++.++
T Consensus 21 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv~en 95 (362)
T 2it1_A 21 NINLKIKDGEF--MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---KDRNVGLVFQNWALYPHMTVYKN 95 (362)
T ss_dssp EEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEEECTTCCCCTTSCHHHH
T ss_pred eeEEEECCCCE--EEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH---hHCcEEEEecCcccCCCCCHHHH
Confidence 34444578888 9999999999999999999998776 78888755321111 12457777887766655566677
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..+++ ....+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++|.
T Consensus 96 i~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 166 (362)
T 2it1_A 96 IAFPLE-------LRKAPREEIDKKVREVAKMLHI--DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166 (362)
T ss_dssp HHHHHH-------HTTCCHHHHHHHHHHHHHHTTC--TTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCH
T ss_pred HHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 766654 2344566777888889998888 455567788999999888 66777899999999999999
Q ss_pred ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK 225 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~ 225 (287)
.....+.+.+.++.++ |+++|+.+.+..++|+++.+-.+.+ +++++..
T Consensus 167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 167 LLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999998754 7799999999999998764422222 5555543
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.76 E-value=1.3e-21 Score=164.62 Aligned_cols=177 Identities=14% Similarity=0.036 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++.++..+.+|++ +.|.||||||||||++++++...+. .|.+++.+..... ...+++.+.+++|+..+.+..++.
T Consensus 27 L~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~ 103 (266)
T 4g1u_C 27 INDVSLHIASGEM--VAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-PKALARTRAVMRQYSELAFPFSVS 103 (266)
T ss_dssp EEEEEEEEETTCE--EEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC-HHHHHHHEEEECSCCCCCSCCBHH
T ss_pred EEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC-HHHHhheEEEEecCCccCCCCCHH
Confidence 3444455578999 9999999999999999999988765 7888886532211 223455677777766544433444
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH------HHHHhhcC
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM------CEASKVQQ 169 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~------l~~~~~~d 169 (287)
+++..+.. .....+..+.+..+++..++ .+...+.+.++|+|+.|| |+.. .|+++++|
T Consensus 104 e~l~~~~~---------~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD 172 (266)
T 4g1u_C 104 EVIQMGRA---------PYGGSQDRQALQQVMAQTDC--LALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD 172 (266)
T ss_dssp HHHHGGGT---------TSCSTTHHHHHHHHHHHTTC--STTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred HHHHhhhh---------hcCcHHHHHHHHHHHHHcCC--hhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 44433211 11222344566777888887 444556678899999998 6666 68889999
Q ss_pred CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
||++++|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 173 EPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 173 EPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 999999999999999999998765 77999999999999988744
No 36
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.76 E-value=1.9e-21 Score=159.82 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=125.7
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEEeCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILCANS 99 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~~~~ 99 (287)
.++..+++|++ +.|.||||||||||++++++...+. .|.+++.+. ........++ +.+.+++|+..++...+.
T Consensus 22 ~vsl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (224)
T 2pcj_A 22 GISLSVKKGEF--VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA 99 (224)
T ss_dssp EEEEEEETTCE--EEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence 34444578888 9999999999999999999988766 788887553 2332222333 567888887655443444
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+.. +...+.++..+.+.++++..++ ++...+.+.++|+|+.|| |+...|.++++|||+++
T Consensus 100 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 170 (224)
T 2pcj_A 100 LENVIVPML-------KMGKPKKEAKERGEYLLSELGL--GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGN 170 (224)
T ss_dssp HHHHHHHHH-------HTTCCHHHHHHHHHHHHHHTTC--TTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred HHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 455544332 2233445556677888888887 444556678999999888 55666789999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
+|+.....+.+.+.++.++ ++++|+...+ .++|+++
T Consensus 171 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~ 210 (224)
T 2pcj_A 171 LDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTL 210 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEE
Confidence 9999999999999888754 7799998765 5566543
No 37
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.75 E-value=2e-21 Score=170.59 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=135.0
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHH---HHHHHHHHHhccCCcEEEEEeCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREA---QQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~---~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+...... .....+.+++++|+..++...++
T Consensus 21 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 98 (372)
T 1g29_1 21 EMSLEVKDGEF--MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV 98 (372)
T ss_dssp EEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred eeEEEEcCCCE--EEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence 33444578888 9999999999999999999998776 77888754311000 00012457777777766555566
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+++ ....+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||+++
T Consensus 99 ~eni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 169 (372)
T 1g29_1 99 YDNIAFPLK-------LRKVPRQEIDQRVREVAELLGL--TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169 (372)
T ss_dssp HHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHTC--GGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--chHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCcc
Confidence 677766654 2345666777788889998888 555667788999999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|......+.+.+.++.++ |+++|+.+.+..++|+++.+
T Consensus 170 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 213 (372)
T 1g29_1 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM 213 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9999999999999988764 77999999999999987644
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.75 E-value=7.2e-22 Score=172.27 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=131.9
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ +.|.||||||||||+++|++...++ .|.+|+.+...... ..+.+.+++|+..++...++.++
T Consensus 21 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv~en 95 (359)
T 2yyz_A 21 GVSFEVKDGEF--VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---KYREVGMVFQNYALYPHMTVFEN 95 (359)
T ss_dssp EEEEEECTTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEEECSSCCCCTTSCHHHH
T ss_pred eeEEEEcCCCE--EEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh---hhCcEEEEecCcccCCCCCHHHH
Confidence 34444578888 9999999999999999999998776 78888755311110 12457777777665555555566
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..+++ +...+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++|.
T Consensus 96 i~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 166 (359)
T 2yyz_A 96 IAFPLR-------ARRISKDEVEKRVVEIARKLLI--DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166 (359)
T ss_dssp HHGGGS-------SSCSHHHHTTHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred HHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 654433 2234455566778888888887 555667788999999888 67777899999999999999
Q ss_pred ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 207 (359)
T 2yyz_A 167 NLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVF 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 9999999999988764 77999999999999987644
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.75 E-value=1.9e-21 Score=169.71 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=132.3
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH--HHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE--AQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~--~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+..... .....++.+.+++|+..++...++.
T Consensus 23 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~ 100 (353)
T 1oxx_K 23 NVNINIENGER--FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF 100 (353)
T ss_dssp EEEEEECTTCE--EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred ceEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence 34444578888 9999999999999999999998776 7788875421100 0001124466677766555444555
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
+++..+++ ....+.++..+.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++
T Consensus 101 eni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~L 171 (353)
T 1oxx_K 101 ENIAFPLT-------NMKMSKEEIRKRVEEVAKILDI--HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171 (353)
T ss_dssp HHHHGGGT-------TSSCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 56554433 2234566777788889998888 555667788999999988 667778999999999999
Q ss_pred cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
|......+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 172 D~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 214 (353)
T 1oxx_K 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL 214 (353)
T ss_dssp CGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999998754 77999999999999987644
No 40
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=1.5e-21 Score=163.25 Aligned_cols=176 Identities=13% Similarity=0.182 Sum_probs=127.1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+.+|++ +.|.||||||||||+++|++...+. .|.+++.+.-. . ...+++.+.+++|+..++...+..++
T Consensus 33 ~vsl~i~~Gei--~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~-~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 33 GISFEIEEGEI--FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-E-PHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-C-HHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred eeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-c-HHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 33444578888 9999999999999999999998766 78888765322 1 22344557777776654333334444
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..... +...+.++..+.+..+++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++++|+
T Consensus 109 l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 179 (256)
T 1vpl_A 109 LRFVAG-------FYASSSSEIEEMVERATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179 (256)
T ss_dssp HHHHHH-------HHCCCHHHHHHHHHHHHHHHCC--GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred HHHHHH-------HcCCChHHHHHHHHHHHHHCCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence 433221 2233445555667788888887 455556678899999888 66666889999999999999
Q ss_pred ccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 180 ~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l 219 (256)
T 1vpl_A 180 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219 (256)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence 9999999999888654 77999999988888877644
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.74 E-value=8.8e-17 Score=141.09 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=115.5
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHh----------cC-CCC-cEEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK----------EG-DFP-HLLFYGPSGAGKKTRIMALLKELYGP-------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~----------~g-~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-------- 62 (287)
.|..++.+.+|++++|...+++.+...+. .+ ..+ +++|+||||||||++++++++.+..+
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 46678899999999999999888887762 12 222 39999999999999999999887543
Q ss_pred --------------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhc---cCCcEEEEEeCCCCC
Q psy2281 63 --------------------------VIILNETDHLTRE-----------AQQALRRTMEKY---ITTCRLILCANSMSQ 102 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~---~~~~~~i~~~~~~~~ 102 (287)
+|+|||+|.+... .++.++..++.. .....++.++|.++.
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 8999999987632 355666666644 234456667777788
Q ss_pred CcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281 103 VIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153 (287)
Q Consensus 103 l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G 153 (287)
+.+++++|| ..+.++.|+.++...++...+...+..+++..+..+++.+.|
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G 251 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence 999999999 568899999999999999999888776788899999999888
No 42
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.74 E-value=9.7e-22 Score=164.96 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|++ +.|.||||||||||++++++.+.+. .|.+++.+.-........++.+.+++|+..++...++.+
T Consensus 24 ~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 24 DGVSISVNKGDV--TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEECCEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred eeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 344445578888 9999999999999999999998766 788887553211112233455777777765443334445
Q ss_pred CCcHHHhc-cccee--ecC---CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 102 QVIPAIRS-RCLCI--RIP---APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 102 ~l~~~l~s-r~~~~--~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
++..+... +...+ .|. ..+..+..+.+.++++..|+ ++...+.+.++|+|+.|| |+...|+++++||
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE 179 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL--SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC--chhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 54332211 00000 000 02223455667788888887 455566788999999988 6667789999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 180 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 180 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999988764 77999999998888887644
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.74 E-value=9e-17 Score=139.27 Aligned_cols=152 Identities=19% Similarity=0.193 Sum_probs=122.7
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHH----------hcCCC-C-cEEEeCCCCCcHHHHHHHHHHHhCCC-------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLL----------KEGDF-P-HLLFYGPSGAGKKTRIMALLKELYGP------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~----------~~g~~-~-~~~l~Gp~G~GKTtl~~~l~~~~~~~------- 62 (287)
..|..++.+.+|++++|...+++.+...+ ..+.. + +++|+||||||||++++++++....+
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 35889999999999999999999998877 12222 2 39999999999999999999887543
Q ss_pred ---------------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhc---cCCcEEEEEeCCCC
Q psy2281 63 ---------------------------VIILNETDHLTR-----------EAQQALRRTMEKY---ITTCRLILCANSMS 101 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~---~~~~~~i~~~~~~~ 101 (287)
+|+|||+|.+.. ..+..++..++.. .....++.++|.++
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence 899999998743 2355666677654 23345566777778
Q ss_pred CCcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281 102 QVIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153 (287)
Q Consensus 102 ~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G 153 (287)
.+.+++++||. .+.++.|+.++...+++..+...+..+++.....+++.+.|
T Consensus 166 ~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g 218 (322)
T 3eie_A 166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 218 (322)
T ss_dssp GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT
T ss_pred hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Confidence 89999999994 68899999999999999999888877789999999998877
No 44
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=2e-17 Score=142.37 Aligned_cols=153 Identities=23% Similarity=0.257 Sum_probs=124.7
Q ss_pred CccCcHHHHHHHHHHHh---------------cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------C----------
Q psy2281 15 KLDFHCKQANHLRNLLK---------------EGDFPHLLFYGPSGAGKKTRIMALLKELYG-------P---------- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~---------------~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~---------- 62 (287)
+++|+..+++.+...+. .....+++|+||||||||++++++++.+.. +
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 58888888887776653 222334999999999999999999887621 1
Q ss_pred ---------------------EEEEeCCCCC---------CHHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHHH
Q psy2281 63 ---------------------VIILNETDHL---------TREAQQALRRTMEKYITTCRLILCANSMS-----QVIPAI 107 (287)
Q Consensus 63 ---------------------~i~ide~d~l---------~~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~l 107 (287)
+++|||+|.+ +...++.|++.++....+..++++++... .+.+++
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 9999999977 67788899999998776777777765432 245899
Q ss_pred hccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q psy2281 108 RSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ--------SDRNLRRAILMCEASKV 167 (287)
Q Consensus 108 ~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~G~~r~al~~l~~~~~ 167 (287)
++|| ..+.|++++.+++..++...++..++.+++++.+.+.+. ..|+.|.+.+.++.++.
T Consensus 192 ~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 9999 789999999999999999999999999999999999886 34889998888887764
No 45
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.73 E-value=2.8e-21 Score=168.01 Aligned_cols=171 Identities=12% Similarity=0.110 Sum_probs=130.4
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
++..+++|++ +.|.||||||||||+++|++...++ .|.+++.+.... ...++.+.+++|+..++...++.+++
T Consensus 19 vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 19 LSLKVESGEY--FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---SPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEECTTCE--EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS---CHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred eEEEEcCCCE--EEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC---chhhCcEEEEecCcccCCCCCHHHHH
Confidence 3444578888 9999999999999999999998776 788887553211 11245688888887766666667777
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI 178 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~ 178 (287)
..+++.+ ..+.+ +.+.++++..++ ++...+++.++|+|+.|| |+...|+++++|||++++|..
T Consensus 94 ~~~~~~~-------~~~~~---~~v~~~l~~~~L--~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 161 (348)
T 3d31_A 94 EFGMRMK-------KIKDP---KRVLDTARDLKI--EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161 (348)
T ss_dssp HHHHHHH-------CCCCH---HHHHHHHHHTTC--TTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHH
T ss_pred HHHHHHc-------CCCHH---HHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 6665421 11112 556777787787 455567788999999988 666668999999999999999
Q ss_pred cCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 179 VEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 179 ~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
....+.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 162 ~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl 201 (348)
T 3d31_A 162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201 (348)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999998764 77999999999999987644
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=2.7e-16 Score=136.35 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=124.2
Q ss_pred CCCCCcc-C--cHHHHHHHHHHHhcC--CCCcEEEeCCCCCcHHHHHHHHHHHh---CCC--------------------
Q psy2281 11 NNLQKLD-F--HCKQANHLRNLLKEG--DFPHLLFYGPSGAGKKTRIMALLKEL---YGP-------------------- 62 (287)
Q Consensus 11 ~~~~~~~-~--~~~~~~~l~~~~~~g--~~~~~~l~Gp~G~GKTtl~~~l~~~~---~~~-------------------- 62 (287)
.+|++++ | +......+...+... ..++++|+||||+||||+++++++.+ ...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG 87 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC
Confidence 3677776 3 445566677776553 23459999999999999999999876 222
Q ss_pred -------------EEEEeCCCCCCH--HHHHHHHHHHHhcc-CCcEEEEEeCCCC----CCcHHHhccc---ceeecCCC
Q psy2281 63 -------------VIILNETDHLTR--EAQQALRRTMEKYI-TTCRLILCANSMS----QVIPAIRSRC---LCIRIPAP 119 (287)
Q Consensus 63 -------------~i~ide~d~l~~--~~~~~l~~~i~~~~-~~~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~ 119 (287)
++++||++.+.. ..+..+...+.... ....++++++... .+.+.+.+|+ ..+.+++
T Consensus 88 ~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 88 TINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp CHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred cHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 899999998875 56777777776543 3456777776542 5889999999 6789999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ 168 (287)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~ 168 (287)
+.++...++...++..++.+++++.+++++.+ |+.|.+.+.+..+...
T Consensus 167 ~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 9999999998887765
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=7.8e-17 Score=140.15 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=118.5
Q ss_pred CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------- 62 (287)
..|+++++|..+++++|+..++..+...+..|.. ++|+||||+|||++++++++.+..+
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~--vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGGH--ILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTCC--EEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCCe--EEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce
Confidence 3699999999999999999999988888877765 9999999999999999999865321
Q ss_pred -------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCC-----CCcHHH
Q psy2281 63 -------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMS-----QVIPAI 107 (287)
Q Consensus 63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~-----~l~~~l 107 (287)
++++||++.++...++.|+..++.. +....++.++|..+ .+.+++
T Consensus 93 ~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l 172 (331)
T 2r44_A 93 IYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQ 172 (331)
T ss_dssp EEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHH
T ss_pred eecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHH
Confidence 8999999999999999999988852 22333443444222 288999
Q ss_pred hcccc-eeecCCCCHHHHHHHHHHHHHHh----------------------CCCCCHHHHHHHHHHc
Q psy2281 108 RSRCL-CIRIPAPTHEEIVSVLTNICKKE----------------------GLTIPPEFALRLAQQS 151 (287)
Q Consensus 108 ~sr~~-~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~l~~~s 151 (287)
++||. .+.+..|+.++..+++...+... ++.+++++.+++++++
T Consensus 173 ~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~ 239 (331)
T 2r44_A 173 VDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELV 239 (331)
T ss_dssp HTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 99997 48999999999999988876542 5667888888887654
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.71 E-value=2.2e-16 Score=138.76 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=121.1
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP--------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~--------- 62 (287)
+.++++|.+|++++|+..+++.+...+.. +..+ +++|+||+|||||++++++++....+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 56789999999999999999888887732 2223 39999999999999999999887533
Q ss_pred -------------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhc----cCCcEEEEEeCCCCC
Q psy2281 63 -------------------------VIILNETDHLTR-----------EAQQALRRTMEKY----ITTCRLILCANSMSQ 102 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~----~~~~~~i~~~~~~~~ 102 (287)
+|+|||+|.+.. ..+..++..++.. ..+..++.++|..+.
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 899999987621 2344556666543 233456667777778
Q ss_pred CcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281 103 VIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157 (287)
Q Consensus 103 l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~ 157 (287)
+.+++++||. .+.++.|+.++...++...++..++.+++...+.+++.+.|-..+
T Consensus 234 l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~ 289 (357)
T 3d8b_A 234 IDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGA 289 (357)
T ss_dssp BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHH
T ss_pred CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHH
Confidence 9999999996 678999999999999999999888888999999999988884333
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.71 E-value=8.9e-17 Score=146.00 Aligned_cols=158 Identities=15% Similarity=0.230 Sum_probs=119.6
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P---------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~---------- 62 (287)
.|.++|||..+++++|+...+..+...+..+..+|++|+||||+|||+++++++..+.. .
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~ 248 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY 248 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc
Confidence 58899999999999999999999999988777778999999999999999999988611 0
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHHHhcccceeec
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS-----QVIPAIRSRCLCIRI 116 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~ 116 (287)
++++| .+.+.++.|.+.++. ....+|.++|..+ .+.+++++||..+.|
T Consensus 249 ~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 249 RGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp ----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 66666 223344555544442 2456666666665 478999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHh
Q psy2281 117 PAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNLR------RAILMCEASK 166 (287)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~r------~al~~l~~~~ 166 (287)
..|+.++...++..++.. .++.+++++...++.++.+.++ +++..++...
T Consensus 323 ~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 323 DQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (468)
T ss_dssp CCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHH
Confidence 999999999999988766 6788899999999988765432 4666665443
No 50
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.3e-15 Score=133.84 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=113.1
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC----------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP---------- 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~---------- 62 (287)
++-...+|+++.|..++++.|+..+. -|-.|+ ++|+||||||||++++++|++...+
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 33444689999999999988887762 143333 9999999999999999999998654
Q ss_pred ------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCCC
Q psy2281 63 ------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMSQ 102 (287)
Q Consensus 63 ------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~~ 102 (287)
+|+|||+|.+.. . ....|+..|+.... +..++.++|.++.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 999999998632 1 23345556665433 3346677888899
Q ss_pred CcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHHHH
Q psy2281 103 VIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAILMC 162 (287)
Q Consensus 103 l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~~l 162 (287)
+++++++ |+ ..+.|+.|+.++..++++..+++.++. ++..++.+++.+ |.|++..+...
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA 365 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEA 365 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999987 77 468999999999999998888776653 222356666654 44666655443
No 51
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.1e-15 Score=132.44 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=117.4
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHh----------cCCCC--cEEEeCCCCCcHHHHHHHHHHHh-CCC---------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLK----------EGDFP--HLLFYGPSGAGKKTRIMALLKEL-YGP--------- 62 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~----------~g~~~--~~~l~Gp~G~GKTtl~~~l~~~~-~~~--------- 62 (287)
+.++.+.+|+++.|...+++.+...+. .+..| +++|+||||||||++++++++.. ...
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 345677899999999999998887762 11222 39999999999999999999987 221
Q ss_pred -------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc---cCCcEEEEEeCCCCCC
Q psy2281 63 -------------------------VIILNETDHLT-----------REAQQALRRTMEKY---ITTCRLILCANSMSQV 103 (287)
Q Consensus 63 -------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~---~~~~~~i~~~~~~~~l 103 (287)
+|+|||+|.+. ....+.++..++.. .....++.++|.++.+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 89999999872 12345566666654 2334566677778889
Q ss_pred cHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281 104 IPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN 154 (287)
Q Consensus 104 ~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~ 154 (287)
.+++++|| ..+.++.|+.++...+++..+...+..+++...+.+++.+.|-
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGY 214 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTC
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 99999999 5688999999999999999988877777888999999988774
No 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=4.7e-21 Score=159.13 Aligned_cols=177 Identities=18% Similarity=0.105 Sum_probs=119.7
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ +.|.||||||||||+++|++...+. .|.+++.+.-........++.+.+++|+..++...+..++
T Consensus 24 ~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 24 GIDLKVPRGQI--VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp EEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence 34444578888 9999999999999999999988766 7888875532111111122336777776544333333344
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG-LTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ 176 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d 176 (287)
+..+.. ...+.++..+.+..+++..+ + ++...+.+.++|+|+.|| |+...|+++++|||++++|
T Consensus 102 l~~~~~--------~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 171 (240)
T 1ji0_A 102 LMMGAY--------NRKDKEGIKRDLEWIFSLFPRL--KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171 (240)
T ss_dssp HHGGGT--------TCCCSSHHHHHHHHHHHHCHHH--HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred HHHhhh--------cCCCHHHHHHHHHHHHHHcccH--hhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 432210 11122344455666666653 4 222334566799998888 6666788999999999999
Q ss_pred CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+.....+.+.+.++.+. ++++|+.+.+..++|+++.+
T Consensus 172 ~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 172 PILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999888654 77999999999988887644
No 53
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.2e-16 Score=131.38 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=116.2
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP-------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-------- 62 (287)
+|.+++++..|++++|...+++.+...+.. ...| +++|+|||||||||+++++++....+
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 599999999999999999888777665521 2233 39999999999999999999987533
Q ss_pred --------------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhcc--CCcEEEEEeCCC
Q psy2281 63 --------------------------VIILNETDHLTR--------------EAQQALRRTMEKYI--TTCRLILCANSM 100 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~--~~~~~i~~~~~~ 100 (287)
++++||+|.+.. .....++..++... ....++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 788999865421 22344555565432 234566677777
Q ss_pred CCCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHh
Q psy2281 101 SQVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR-NLRRAILMCEASK 166 (287)
Q Consensus 101 ~~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G-~~r~al~~l~~~~ 166 (287)
+.+.+++.+ |+. .+.++.|+.++..++++..++...+. ++.....++..+.| +.|...+....+.
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 888888877 764 57888999999999888887765542 22235677888888 6666555544443
No 54
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.69 E-value=9.1e-21 Score=157.15 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=116.5
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
++ ++ +.|.||||||||||++++++...+. .|.+++.+.-.. ...++.+.+++|+..++...+..+++..+..
T Consensus 23 ~~-e~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 96 (240)
T 2onk_A 23 GR-DY--CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL---PPERRGIGFVPQDYALFPHLSVYRNIAYGLR 96 (240)
T ss_dssp CS-SE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---CTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred CC-EE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC---chhhCcEEEEcCCCccCCCCcHHHHHHHHHH
Confidence 55 66 9999999999999999999998766 788887543110 1112346666666543322233333322111
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW 183 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~ 183 (287)
+. ......+.+.++++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++++|+.....+
T Consensus 97 -------~~--~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~ 165 (240)
T 2onk_A 97 -------NV--ERVERDRRVREMAEKLGI--AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165 (240)
T ss_dssp -------TS--CHHHHHHHHHHHHHTTTC--TTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH
T ss_pred -------Hc--CCchHHHHHHHHHHHcCC--HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 111225567777887777 444556678999999888 66667899999999999999999999
Q ss_pred HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 166 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l 200 (240)
T 2onk_A 166 MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200 (240)
T ss_dssp HHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999988653 77999999999988887644
No 55
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=1.2e-15 Score=135.22 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=131.3
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc---C---CCCcEEEeCCCCCcHHHHHHHHHHHhCC----C----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE---G---DFPHLLFYGPSGAGKKTRIMALLKELYG----P---------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g---~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~---------- 62 (287)
+|.++|+| ++++|+......+...+.. | ..|+++|+||+|+||||+++++++.+.. .
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 46778888 7789998888777777743 2 2235999999999999999999887621 0
Q ss_pred ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc----CCcEEEEE
Q psy2281 63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYI----TTCRLILC 96 (287)
Q Consensus 63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~----~~~~~i~~ 96 (287)
++++||++.++...+..|.+.++... .+..++++
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 78999999998888888888877654 36677888
Q ss_pred eCCC---CCCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHc---------CCcHHHHHH
Q psy2281 97 ANSM---SQVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKKE--GLTIPPEFALRLAQQS---------DRNLRRAIL 160 (287)
Q Consensus 97 ~~~~---~~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---------~G~~r~al~ 160 (287)
++.. +.+.+.+.+|+. .+.|++++.+++..++...+... ...+++++.+.+++.+ +|+.|.++.
T Consensus 166 ~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 166 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred ECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 7776 568888999986 69999999999999999988762 2356899999999999 899999999
Q ss_pred HHHHHhhc
Q psy2281 161 MCEASKVQ 168 (287)
Q Consensus 161 ~l~~~~~~ 168 (287)
.+..+...
T Consensus 246 ~l~~a~~~ 253 (389)
T 1fnn_A 246 ILYRSAYA 253 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876653
No 56
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.69 E-value=1.1e-20 Score=159.29 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=123.3
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc-EEEEEeCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC-RLILCANSMS 101 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~-~~i~~~~~~~ 101 (287)
.++..+.+|++ +.|.||||||||||+++|++...+. .|.+++.+. ... .+++.+.+++|++ ..++..+..+
T Consensus 25 ~vsl~i~~Ge~--~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-~~~---~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 25 NVSLVINEGEC--LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK-KGY---EIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC-CHH---HHGGGEEEECSSGGGGCCCSSHHH
T ss_pred eeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC-chH---HhhhhEEEEeccchhhcCCCcHHH
Confidence 34444578888 9999999999999999999988766 788887653 321 3445567777764 2333334444
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP--PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
++..+.. .. .+.++..+.+...++..|+ + +...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 99 nl~~~~~-------~~-~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 99 EVAFAVK-------NF-YPDRDPVPLVKKAMEFVGL--DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHTTT-------TT-CTTSCSHHHHHHHHHHTTC--CHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHH-------hc-CCHHHHHHHHHHHHHHcCc--CCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 4433211 00 1222233456677777787 6 55566778999999988 66667889999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 211 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999888654 77999999988888877644
No 57
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.68 E-value=8.5e-16 Score=138.65 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=118.5
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHh----------cC-CCC-cEEEeCCCCCcHHHHHHHHHHHh-CCC--------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLK----------EG-DFP-HLLFYGPSGAGKKTRIMALLKEL-YGP-------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~----------~g-~~~-~~~l~Gp~G~GKTtl~~~l~~~~-~~~-------- 62 (287)
+..++.+.+|++++|...++..|...+. .+ ..+ +++|+||||||||++++++++.+ ..+
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 5567888999999999999998887762 11 222 39999999999999999999987 211
Q ss_pred --------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc---cCCcEEEEEeCCCCC
Q psy2281 63 --------------------------VIILNETDHLT-----------REAQQALRRTMEKY---ITTCRLILCANSMSQ 102 (287)
Q Consensus 63 --------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~---~~~~~~i~~~~~~~~ 102 (287)
+|+|||+|.+. ...++.++..++.. .....++.++|.++.
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 89999999873 23345555555543 334567777888888
Q ss_pred CcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281 103 VIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153 (287)
Q Consensus 103 l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G 153 (287)
+.+++++||. .+.++.|+.++...++...+...+..+++..+..++..+.|
T Consensus 284 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G 335 (444)
T 2zan_A 284 LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG 335 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTT
T ss_pred cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 9999999995 78899999999999999988877766788899999998888
No 58
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.68 E-value=6.6e-21 Score=155.11 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=116.2
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
++..+++|++ ++|.||||||||||++++++...+. .|.+++.+. . ..++.+.+++|+..++...+..+++
T Consensus 28 vsl~i~~Ge~--~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~-~-----~~~~~i~~v~q~~~~~~~~tv~enl 99 (214)
T 1sgw_A 28 ITMTIEKGNV--VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-T-----KVKGKIFFLPEEIIVPRKISVEDYL 99 (214)
T ss_dssp EEEEEETTCC--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG-G-----GGGGGEEEECSSCCCCTTSBHHHHH
T ss_pred eEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh-h-----hhcCcEEEEeCCCcCCCCCCHHHHH
Confidence 3344578999 9999999999999999999988766 788887553 2 1234466666665443222333444
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI 178 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~ 178 (287)
..... +.... .+ .+.+..+++..|+. +. .+.+.++|+|+.|| |+...|.++++|||++++|+.
T Consensus 100 ~~~~~-------~~~~~-~~-~~~~~~~l~~~gl~--~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 100 KAVAS-------LYGVK-VN-KNEIMDALESVEVL--DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHHH-------HTTCC-CC-HHHHHHHHHHTTCC--CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHHH-------hcCCc-hH-HHHHHHHHHHcCCC--cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 33221 11111 11 34456667777873 33 56678899999888 555567899999999999999
Q ss_pred cCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 179 VEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 179 ~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
....+.+.+.++.+. ++++|+.+.+..++++++
T Consensus 168 ~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 168 SKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999888754 779999988877777655
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=6.9e-16 Score=136.58 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=125.8
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc---CC-CCcEEEeCCCCCcHHHHHHHHHHHh-----------CC------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE---GD-FPHLLFYGPSGAGKKTRIMALLKEL-----------YG------ 61 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~-~~~~~l~Gp~G~GKTtl~~~l~~~~-----------~~------ 61 (287)
.|..+|+| ++++|+....+.+...+.. +. .++++|+||+|+||||+++++++.+ ..
T Consensus 12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 57888999 7889998887777766532 33 3349999999999999999998753 10
Q ss_pred ---------------------------------------------C-EEEEeCCCCCCHHH-HHH-HHHHHHhccCCcEE
Q psy2281 62 ---------------------------------------------P-VIILNETDHLTREA-QQA-LRRTMEKYITTCRL 93 (287)
Q Consensus 62 ---------------------------------------------~-~i~ide~d~l~~~~-~~~-l~~~i~~~~~~~~~ 93 (287)
. +++|||+|.+.... ++. +...+... .+..+
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~i 167 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISV 167 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEE
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEE
Confidence 0 78999998765432 344 44444433 56677
Q ss_pred EEEeCCC---CCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcC---CcHHHHHHHHHH
Q psy2281 94 ILCANSM---SQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKK--EGLTIPPEFALRLAQQSD---RNLRRAILMCEA 164 (287)
Q Consensus 94 i~~~~~~---~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~s~---G~~r~al~~l~~ 164 (287)
+++++.. +.+.+++++|+ ..+.|++++.+++..++...++. .+..+++++.+.+++.++ |+.|.+++.++.
T Consensus 168 I~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 168 IMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp EEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 8887766 56888999995 68999999999999999998875 345668899999999998 999999999988
Q ss_pred HhhcCC
Q psy2281 165 SKVQQY 170 (287)
Q Consensus 165 ~~~~de 170 (287)
+....+
T Consensus 248 a~~~a~ 253 (384)
T 2qby_B 248 AAQLAS 253 (384)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 776544
No 60
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=6.2e-15 Score=123.66 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCCCCCccCcHHHHHHHHHHHhc------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKE------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
+.+|++++|...+++.+...+.. ...++++|+||||||||++++++++....+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 35789999999888888776521 112238999999999999999999887533
Q ss_pred -------------------EEEEeCCCCCCH------------HHHHH---HHHHHHhc--cCCcEEEEEeCCCCCCcHH
Q psy2281 63 -------------------VIILNETDHLTR------------EAQQA---LRRTMEKY--ITTCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 -------------------~i~ide~d~l~~------------~~~~~---l~~~i~~~--~~~~~~i~~~~~~~~l~~~ 106 (287)
+++|||+|.+.. ..+.. +...++.. .....++.++|..+.+.++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 899999998732 22223 33334332 2234566667777778888
Q ss_pred Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCc
Q psy2281 107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRN 154 (287)
Q Consensus 107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~ 154 (287)
+++ |+ ..+.++.|+.++..++++..++..++..+... ...++..+.|-
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~ 213 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGF 213 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCC
Confidence 888 88 56889999999999999999999888766553 47788777664
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=5.7e-16 Score=136.98 Aligned_cols=162 Identities=21% Similarity=0.301 Sum_probs=126.6
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhc----CCCCcEEEeCCCCCcHHHHHHHHHHHh---------CCC--------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE----GDFPHLLFYGPSGAGKKTRIMALLKEL---------YGP-------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~l~Gp~G~GKTtl~~~l~~~~---------~~~-------- 62 (287)
|..+|+| ++++|+......+..++.. +..++++|+||+|+||||+++.+++.+ ...
T Consensus 12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 4556777 7789999888888887743 334459999999999999999998765 100
Q ss_pred --------------------------------------------EEEEeCCCCCCHH--HHHHHHHHHHhc-----cCCc
Q psy2281 63 --------------------------------------------VIILNETDHLTRE--AQQALRRTMEKY-----ITTC 91 (287)
Q Consensus 63 --------------------------------------------~i~ide~d~l~~~--~~~~l~~~i~~~-----~~~~ 91 (287)
++++||++.+... .+..+...+... ....
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~ 168 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWV 168 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----C
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceE
Confidence 8999999988665 566666666544 3345
Q ss_pred EEEEEeCCC---CCCcHHHhccc--ceeecCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcC---CcHHHHHHH
Q psy2281 92 RLILCANSM---SQVIPAIRSRC--LCIRIPAPTHEEIVSVLTNICKK--EGLTIPPEFALRLAQQSD---RNLRRAILM 161 (287)
Q Consensus 92 ~~i~~~~~~---~~l~~~l~sr~--~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~s~---G~~r~al~~ 161 (287)
.++.+++.. +.+.+.+++|+ ..+.|++++.+++..++...+.. .+..+++++.+.+++.++ |+.|.+++.
T Consensus 169 ~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 169 SLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHH
Confidence 677777766 56888999999 57999999999999999998876 455678889999999998 999999999
Q ss_pred HHHHhhc
Q psy2281 162 CEASKVQ 168 (287)
Q Consensus 162 l~~~~~~ 168 (287)
+..+...
T Consensus 249 l~~a~~~ 255 (387)
T 2v1u_A 249 LRVAGEI 255 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 62
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.68 E-value=1e-19 Score=151.61 Aligned_cols=168 Identities=14% Similarity=0.132 Sum_probs=119.6
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHH
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI 107 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l 107 (287)
.+.+|++ ++|.||||+|||||+++|++.+.+. .|.+++.+.- ......+++.+.+++|+..++...+..+++..+
T Consensus 22 ~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~-~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~- 97 (249)
T 2qi9_C 22 EVRAGEI--LHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE-AWSATKLALHRAYLSQQQTPPFATPVWHYLTLH- 97 (249)
T ss_dssp EEETTCE--EEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGG-GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT-
T ss_pred EEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECC-cCCHHHHhceEEEECCCCccCCCCcHHHHHHHh-
Confidence 3467888 9999999999999999999987653 6778875421 111233556677887776543222333333211
Q ss_pred hcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH-------HhhcCCCcccc
Q psy2281 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA-------SKVQQYPFQID 175 (287)
Q Consensus 108 ~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~-------~~~~dep~~~~ 175 (287)
+ ....+ .+.+..+++..|+ ++...+.+.++|+|+.|| |+...|. ++++|||++++
T Consensus 98 --~-----~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 98 --Q-----HDKTR----TELLNDVAGALAL--DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp --C-----SSTTC----HHHHHHHHHHTTC--GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred --h-----ccCCc----HHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence 0 11112 3445667777777 444556678899999888 7777889 99999999999
Q ss_pred cCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 165 D~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l 206 (249)
T 2qi9_C 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL 206 (249)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999888654 77999999998888887644
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=1.4e-15 Score=129.30 Aligned_cols=162 Identities=22% Similarity=0.306 Sum_probs=115.4
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHhc-------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLKE-------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP--------- 62 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~-------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------- 62 (287)
.....+..|++++|...+++.+...+.. ....+++|+||||||||++++++++.+..+
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3445567899999999998888877632 122339999999999999999999887543
Q ss_pred -------------------------EEEEeCCCCC-----------CHHHHHHHHHHHHhc-----cCCcEEEEEeCCCC
Q psy2281 63 -------------------------VIILNETDHL-----------TREAQQALRRTMEKY-----ITTCRLILCANSMS 101 (287)
Q Consensus 63 -------------------------~i~ide~d~l-----------~~~~~~~l~~~i~~~-----~~~~~~i~~~~~~~ 101 (287)
+++|||+|.+ ....+..+...+... ..+..++.+++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 8999999876 334455555554432 22445667777777
Q ss_pred CCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHhh
Q psy2281 102 QVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILMCEASKV 167 (287)
Q Consensus 102 ~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l~~~~~ 167 (287)
.+.+++++ |+. .+.++.|+.++..++++..+...++. .+.....++..+.| +++.++........
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 89999988 774 68999999999999999888776653 22335667766665 55555554444443
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.67 E-value=1.2e-15 Score=131.12 Aligned_cols=152 Identities=19% Similarity=0.298 Sum_probs=115.5
Q ss_pred CccCcHHHHHHHHHHHhc-------------CC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 15 KLDFHCKQANHLRNLLKE-------------GD-FPHLLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~-------------g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
+++|+..++..+...+.. +. .++++|+||||+|||++++++++.+..+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 478999888888776643 22 3349999999999999999998876321
Q ss_pred -----------------------EEEEeCCCCCCHHH------------HHHHHHHHHhc----------cCCcEEEEEe
Q psy2281 63 -----------------------VIILNETDHLTREA------------QQALRRTMEKY----------ITTCRLILCA 97 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~~~------------~~~l~~~i~~~----------~~~~~~i~~~ 97 (287)
++++||+|.+.... ++.|++.++.. .....++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 89999999886543 67788888853 1234455553
Q ss_pred ----CCCCCCcHHHhcccc-eeecCCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHHc--------
Q psy2281 98 ----NSMSQVIPAIRSRCL-CIRIPAPTHEEIVSVLTN-----------ICKKEGL--TIPPEFALRLAQQS-------- 151 (287)
Q Consensus 98 ----~~~~~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s-------- 151 (287)
+....+.+++.+||. .+.|++++.+++..++.. .+...+. .+++++.+.+++.+
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 234568899999996 599999999999888872 2333453 57999999999988
Q ss_pred CCcHHHHHHHHHHHh
Q psy2281 152 DRNLRRAILMCEASK 166 (287)
Q Consensus 152 ~G~~r~al~~l~~~~ 166 (287)
.|+.|.+.+.++.++
T Consensus 256 ~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 256 NIGARRLHTVMERLM 270 (310)
T ss_dssp CCTTHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHH
Confidence 799999999988765
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=8.2e-16 Score=131.81 Aligned_cols=145 Identities=12% Similarity=0.114 Sum_probs=111.1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--------C---------------------------------
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------P--------------------------------- 62 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------~--------------------------------- 62 (287)
..|...+..+..++++|+||||||||++++.+++.+.. .
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~ 113 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGD 113 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CC
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCch
Confidence 34555556677777999999999999999999887720 0
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhcc---CCcEEEEEeCCCCC----CcHHHhccc--c
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKYI---TTCRLILCANSMSQ----VIPAIRSRC--L 112 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~---~~~~~i~~~~~~~~----l~~~l~sr~--~ 112 (287)
+|++||+|.+. .|+.|...++... ....+|.++|..+. +.+.++||+ .
T Consensus 114 ~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~ 191 (318)
T 3te6_A 114 ISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFT 191 (318)
T ss_dssp CCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEE
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCce
Confidence 89999999987 5666766665432 23456666777654 344568898 4
Q ss_pred eeecCCCCHHHHHHHHHHHHHHhC-----------------------------------CCCCHHHHHHHHH---HcCCc
Q psy2281 113 CIRIPAPTHEEIVSVLTNICKKEG-----------------------------------LTIPPEFALRLAQ---QSDRN 154 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~-----------------------------------~~~~~~~~~~l~~---~s~G~ 154 (287)
.+.|++++.+++..+++..++... +.+++++++.+++ .+.||
T Consensus 192 ~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD 271 (318)
T 3te6_A 192 EIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS 271 (318)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCCh
Confidence 699999999999999999887742 1368999999998 57999
Q ss_pred HHHHHHHHHHHhhcCC
Q psy2281 155 LRRAILMCEASKVQQY 170 (287)
Q Consensus 155 ~r~al~~l~~~~~~de 170 (287)
+|+|+..+.......|
T Consensus 272 ~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 272 TEKAFKICEAAVEISK 287 (318)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776543
No 66
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.65 E-value=3.1e-20 Score=157.24 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=121.1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEE--eCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT-REAQQALRRTMEKYITTCRLILC--ANS 99 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~--~~~ 99 (287)
.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+.-. ......+++.+.+++|+..+.+. .++
T Consensus 39 ~isl~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv 116 (279)
T 2ihy_A 39 KISWQIAKGDK--WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV 116 (279)
T ss_dssp EEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred eeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence 34444578888 9999999999999999999998766 78888865320 10112234446666655422111 122
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
.+++..+...+ ..+.....++..+.+.++++..|+ ++...+.+.++|+|+.|| |+...|+++++|||+++
T Consensus 117 ~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~ 191 (279)
T 2ihy_A 117 IDVVISGAFKS---IGVYQDIDDEIRNEAHQLLKLVGM--SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAG 191 (279)
T ss_dssp HHHHHTTC------------CCHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HHHHHhhhhhc---cccccCCcHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 23332211000 001111123445667778888887 455566788999999888 66777889999999999
Q ss_pred ccCccCccHHHHHHHHHHH------HHhccChhHHHHHHHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL------IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~------i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l 236 (279)
T 2ihy_A 192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL 236 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999988764 46899999888888887644
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.65 E-value=2.9e-15 Score=130.95 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=117.5
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC------------------------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------------ 61 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------ 61 (287)
..-+|.+|++++|+..++..+......+..++++|+||+|||||++++++++.+..
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 34567889999999887776655544333345999999999999999999876531
Q ss_pred --------------------------------------------------CEEEEeCCCCCCHHHHHHHHHHHHhc----
Q psy2281 62 --------------------------------------------------PVIILNETDHLTREAQQALRRTMEKY---- 87 (287)
Q Consensus 62 --------------------------------------------------~~i~ide~d~l~~~~~~~l~~~i~~~---- 87 (287)
.+++|||++.++...++.|++.++.-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~ 175 (350)
T 1g8p_A 96 STNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV 175 (350)
T ss_dssp CCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred ccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEE
Confidence 18999999999999999999988862
Q ss_pred ---------cCCcEEEEEeCCCC-CCcHHHhcccce-eecCCCC-HHHHHHHHHHH------------------------
Q psy2281 88 ---------ITTCRLILCANSMS-QVIPAIRSRCLC-IRIPAPT-HEEIVSVLTNI------------------------ 131 (287)
Q Consensus 88 ---------~~~~~~i~~~~~~~-~l~~~l~sr~~~-~~~~~~~-~~~~~~~l~~~------------------------ 131 (287)
+.+..++.++|..+ .+.+++.+||.. +.+++++ .++...++...
T Consensus 176 ~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (350)
T 1g8p_A 176 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ 255 (350)
T ss_dssp CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHH
Confidence 12344555555434 789999999975 8898884 44443444331
Q ss_pred -----HHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHhh
Q psy2281 132 -----CKKEGLTIPPEFALRLAQQSDR----NLRRAILMCEASKV 167 (287)
Q Consensus 132 -----~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l~~~~~ 167 (287)
....++.+++++.+++.+.+.+ +.|.+.+.+..+..
T Consensus 256 i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 256 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 1223457799999999988776 78988877765443
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-14 Score=129.86 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=111.7
Q ss_pred CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
..+|+++.|..++++.|...+. -|-.|+ ++||||||||||++++++|++...+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 4579999999988888877761 243333 9999999999999999999998654
Q ss_pred --------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCCCCcHH
Q psy2281 63 --------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 --------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~~ 106 (287)
+|||||+|.+.. . ....|+..|+.... +..+|.++|.++.++++
T Consensus 257 Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 257 GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHH
Confidence 999999997631 1 23345666665433 34577788888999999
Q ss_pred Hhcc--c-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHHHHHHH
Q psy2281 107 IRSR--C-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAILMCEAS 165 (287)
Q Consensus 107 l~sr--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~~l~~~ 165 (287)
++++ + ..+.|+.|+.++..++++..+....+. ++..+..+++.+ |.|++.++......
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (437)
T 4b4t_L 337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFF 401 (437)
T ss_dssp TTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred HhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9875 4 358899999999999999888776542 222356666654 44777655544333
No 69
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.6e-15 Score=129.35 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=112.4
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCC-c-EEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFP-H-LLFYGPSGAGKKTRIMALLKELYGP--------- 62 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~-~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------- 62 (287)
+++-...+|+++.|..++++.|+..+. -|-.| . ++|+||||||||++++++|++...+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 344455689999999998888877661 23333 3 9999999999999999999988644
Q ss_pred -------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCC
Q psy2281 63 -------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMS 101 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~ 101 (287)
+|+|||+|.+.. . ....++..++.... +..+|.++|.++
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 999999997631 1 22345555554432 335677788889
Q ss_pred CCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHHHH
Q psy2281 102 QVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----SDRNLRRAILMCE 163 (287)
Q Consensus 102 ~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~G~~r~al~~l~ 163 (287)
.+++++++ |+. .+.|+.|+.++..++++..+++..+. ++..++.+++. ||.|++.++....
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999987 773 58899999999999999888776553 12235566654 4557766554443
No 70
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.4e-14 Score=128.85 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=108.6
Q ss_pred CCCCCCCccCcHHHHHHHHHHH-----------hcCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281 9 RPNNLQKLDFHCKQANHLRNLL-----------KEGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP------------- 62 (287)
Q Consensus 9 ~p~~~~~~~~~~~~~~~l~~~~-----------~~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------- 62 (287)
..-+|+++.|..++++.|+..+ .-|- .|. ++|+||||||||++++++|++...+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence 3468999999999988888765 1243 333 9999999999999999999988654
Q ss_pred ---------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCCCCcH
Q psy2281 63 ---------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMSQVIP 105 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~ 105 (287)
+|++||+|.+.. . ....++..|+.... ...++.++|.++.+.+
T Consensus 284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDp 363 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDP 363 (467)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCH
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCCh
Confidence 999999997631 1 12334445554332 2345667777889999
Q ss_pred HHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Q psy2281 106 AIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILMC 162 (287)
Q Consensus 106 ~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l 162 (287)
++++ |+ ..+.|+.|+.+++.++++..++...+. .+..++.+++.+.| |++.++...
T Consensus 364 ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 364 ALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp HHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred hhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9987 78 468999999999999998888766553 12235566665544 666654443
No 71
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=1.9e-15 Score=130.11 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=117.2
Q ss_pred CCccCcHHHHHHHHHHHhcCC--------CC-cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKEGD--------FP-HLLFYGPSGAGKKTRIMALLKELYGP---------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~g~--------~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------- 62 (287)
++++|+..+++.+...+..+. .. +++|+|||||||||+++++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 357899998888888875431 12 39999999999999999999876211
Q ss_pred -------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCC-------
Q psy2281 63 -------------------------VIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANS------- 99 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~------- 99 (287)
++++||++.++...++.|++.++... .++.+|+++|.
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred CCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence 89999999999999999999998643 24447777776
Q ss_pred -------------------CCCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281 100 -------------------MSQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ 150 (287)
Q Consensus 100 -------------------~~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~ 150 (287)
...+.+++.+|| .++.|.+++.+++..++...+++. .+.+++++.+.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (311)
T 4fcw_A 177 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAER 256 (311)
T ss_dssp TTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHh
Confidence 235778899999 578899999999999888876653 345689999999987
Q ss_pred cC---CcHHHHHHHHHHHh
Q psy2281 151 SD---RNLRRAILMCEASK 166 (287)
Q Consensus 151 s~---G~~r~al~~l~~~~ 166 (287)
+- |+.|..-+.++.++
T Consensus 257 ~~~~~gn~R~L~~~i~~~~ 275 (311)
T 4fcw_A 257 GYDPVFGARPLRRVIQREL 275 (311)
T ss_dssp SCBTTTBTTTHHHHHHHHT
T ss_pred CCCccCCchhHHHHHHHHH
Confidence 54 77776555555443
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.7e-15 Score=132.00 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=110.0
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHH-----------hcCCC-Cc-EEEeCCCCCcHHHHHHHHHHHhCCC----------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLL-----------KEGDF-PH-LLFYGPSGAGKKTRIMALLKELYGP---------- 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~-----------~~g~~-~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------- 62 (287)
++-.+.+|+++.|...+++.|...+ .-|-. |. ++||||||||||++++++|++...+
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 3344568999999999988887765 12433 32 9999999999999999999998654
Q ss_pred ------------------------EEEEeCCCCCC-----------HHH---HHHHHHHHHhccCC--cEEEEEeCCCCC
Q psy2281 63 ------------------------VIILNETDHLT-----------REA---QQALRRTMEKYITT--CRLILCANSMSQ 102 (287)
Q Consensus 63 ------------------------~i~ide~d~l~-----------~~~---~~~l~~~i~~~~~~--~~~i~~~~~~~~ 102 (287)
+|+|||+|.+. ... ...|+..|+..... ..++.++|.++.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 99999998641 111 23455566655332 345567777889
Q ss_pred CcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHHH
Q psy2281 103 VIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAILM 161 (287)
Q Consensus 103 l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~~ 161 (287)
+++++++ |+ ..+.|+.|+.++..++++..+++..+. ++..++.+++.+ |.|++.++..
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVE 397 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999977 77 468999999999999999888876653 111255566554 4466665544
No 73
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.63 E-value=1.3e-18 Score=145.27 Aligned_cols=181 Identities=11% Similarity=0.025 Sum_probs=116.1
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH--hCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE--LYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~--~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
++..+++|++ +.|.||||+|||||+++|++. ..+. .|.+++.+.-........+..+.+++|+..++...+..+
T Consensus 22 vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (250)
T 2d2e_A 22 VNLVVPKGEV--HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIAN 99 (250)
T ss_dssp EEEEEETTCE--EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHH
T ss_pred eEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHH
Confidence 3444578888 999999999999999999997 3332 788887553211111111223556677765544334444
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ-QSDRNLRR-----AILMCEASKVQQYPFQID 175 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~s~G~~r~-----al~~l~~~~~~dep~~~~ 175 (287)
++..+..... -......+..+.+.++++..|+. ++...+.+.+ +|+|+.|| |+...|+++++|||++++
T Consensus 100 ~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 174 (250)
T 2d2e_A 100 FLRLALQAKL----GREVGVAEFWTKVKKALELLDWD-ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174 (250)
T ss_dssp HHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHTCC-GGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred HHHHHHHhhc----cccCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 4433221100 00123344556677788888872 1223445667 99999988 777778999999999999
Q ss_pred cCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281 176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL 213 (287)
Q Consensus 176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l 213 (287)
|+.....+.+.+.++.+. ++++|+...+..+ +|+++.+
T Consensus 175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp CHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 999988888888887543 7799999888776 4776543
No 74
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=6.6e-16 Score=122.93 Aligned_cols=124 Identities=12% Similarity=0.212 Sum_probs=98.4
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------C-----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------P----------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------~----------- 62 (287)
+|.++|+|..+++++|+......+...+..+..++++|+||+|+|||++++++++.+.. .
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV 90 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh
Confidence 58899999999999999999999988887776666999999999999999999887521 0
Q ss_pred ---------------------------EEEEeCCCCCCHH--------HHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281 63 ---------------------------VIILNETDHLTRE--------AQQALRRTMEKYITTCRLILCANSMS-----Q 102 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~~~--------~~~~l~~~i~~~~~~~~~i~~~~~~~-----~ 102 (287)
+++|||++.+... .++.+...++. .+..++.+++..+ .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~ 168 (195)
T 1jbk_A 91 AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIE 168 (195)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTT
T ss_pred ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHh
Confidence 7999999987532 24455555543 3456777777654 5
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHH
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVL 128 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l 128 (287)
+.+++++||..+.+.+|+.++..+++
T Consensus 169 ~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 169 KDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred cCHHHHHHhceeecCCCCHHHHHHHh
Confidence 78999999988999999988876543
No 75
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.62 E-value=4.8e-19 Score=147.98 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=115.8
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ +.|.||||+|||||++++++.+.+. .|. +++.+.+++|+..++...+..++
T Consensus 23 ~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------------~~~~i~~v~q~~~~~~~~tv~en 86 (253)
T 2nq2_C 23 QLNFDLNKGDI--LAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VYQSIGFVPQFFSSPFAYSVLDI 86 (253)
T ss_dssp EEEEEEETTCE--EEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------------ECSCEEEECSCCCCSSCCBHHHH
T ss_pred EEEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------------EeccEEEEcCCCccCCCCCHHHH
Confidence 33444578888 9999999999999999999988765 333 11235555555443322333344
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
+..+...+... +.... .+..+.+..+++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++++|+
T Consensus 87 l~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 87 VLMGRSTHINT--FAKPK-SHDYQVAMQALDYLNL--THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161 (253)
T ss_dssp HHGGGGGGSCT--TCCCC-HHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred HHHhhhhhccc--ccCCC-HHHHHHHHHHHHHcCC--hHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 33221100000 00112 2334566777888787 444556678999999888 77777899999999999999
Q ss_pred ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.++.++ ++++|+.+.+..++|+++.+
T Consensus 162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l 202 (253)
T 2nq2_C 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL 202 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999888763 77999999999888887644
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=5.4e-15 Score=142.03 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=119.0
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh----------CCC----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL----------YGP---------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~----------~~~---------- 62 (287)
.|.+++||..+++++|+...+..+...+..+..+|++|+||||||||+++++++..+ ...
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~ 248 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY 248 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccc
Confidence 588999999999999999999999999887777789999999999999999999886 110
Q ss_pred ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHHHhcccceeec
Q psy2281 63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS-----QVIPAIRSRCLCIRI 116 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~ 116 (287)
++++| ...+.++.|+..++ .....+|.++|..+ .+.+++++||..+.|
T Consensus 249 ~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v 322 (758)
T 3pxi_A 249 RGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (758)
T ss_dssp ----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred cchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEe
Confidence 67777 22334555555555 23456677776666 588999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHH
Q psy2281 117 PAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNL------RRAILMCEAS 165 (287)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~------r~al~~l~~~ 165 (287)
+.|+.++...++..++.. .++.+++.++..+++++.+.+ .+++..+...
T Consensus 323 ~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 323 DQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp CCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence 999999999999977665 577889999999988765432 3466555543
No 77
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.61 E-value=1.6e-19 Score=152.11 Aligned_cols=186 Identities=10% Similarity=-0.044 Sum_probs=117.4
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.++..+++|++ ++|.||||||||||+++|++.. .+. .|.+++.+.-........+..+.+++|+..++...+..
T Consensus 38 ~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (267)
T 2zu0_C 38 GLSLDVHPGEV--HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQ 115 (267)
T ss_dssp EEEEEECTTCE--EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHH
T ss_pred eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHH
Confidence 34444578888 9999999999999999999974 222 78888755311111111122355666665443222222
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA-QQSDRNLRR-----AILMCEASKVQQYPFQI 174 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~s~G~~r~-----al~~l~~~~~~dep~~~ 174 (287)
+++................+.++..+.+.++++..|+. +....+.+. ++|+|+.|| |+...|+++++|||+++
T Consensus 116 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~ 194 (267)
T 2zu0_C 116 FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP-EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 194 (267)
T ss_dssp HHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC-TTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 33322211000000111234555566778888888873 112233444 499999888 77777899999999999
Q ss_pred ccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281 175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL 213 (287)
Q Consensus 175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l 213 (287)
+|+.....+.+.+.++.+. ++++|+.+.+..+ +|+++.+
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 9999888888888777543 7799999887765 6776543
No 78
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.60 E-value=1.8e-18 Score=147.91 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=117.3
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|+. +.|+||||||||||+++|++.+.+. .|.+|+.+.-.. ....+++.+.+++|++.++ ..+..+|
T Consensus 72 ~isl~i~~Ge~--vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~-~~~~~r~~i~~v~Q~~~lf-~~Tv~eN 147 (306)
T 3nh6_A 72 DVSFTVMPGQT--LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV-TQASLRSHIGVVPQDTVLF-NDTIADN 147 (306)
T ss_dssp EEEEEECTTCE--EEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB-CHHHHHHTEEEECSSCCCC-SEEHHHH
T ss_pred eeeEEEcCCCE--EEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC-CHHHHhcceEEEecCCccC-cccHHHH
Confidence 34444578888 9999999999999999999998776 788898664221 2345677899999987554 3345555
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-----------HHHHcCCcHHH-----HHHHHHHHh
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-----------LAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+..+. ...+.+++ ...++..++ .+..... ..++|+|+.|| |+...+.++
T Consensus 148 i~~~~---------~~~~~~~~----~~~~~~~~l--~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 148 IRYGR---------VTAGNDEV----EAAAQAAGI--HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp HHTTS---------TTCCHHHH----HHHHHHHTC--HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred HHhhc---------ccCCHHHH----HHHHHHhCc--HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 43321 12233333 333444444 2222111 13588888877 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|+.....+.+.+.++.+. |+++|+...+.. +|+++.+
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl 261 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVI 261 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEE
Confidence 999999999999888888888877544 779999998876 7877644
No 79
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.9e-14 Score=126.00 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=107.9
Q ss_pred CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-------------- 62 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-------------- 62 (287)
..+|+++.|...+++.|...+. -|-.|+ ++|+||||||||++++++|+.+..+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 3579999999988888877661 243333 9999999999999999999988644
Q ss_pred --------------------EEEEeCCCCCC--------------HHHHHHHHHHHHhccC--CcEEEEEeCCCCCCcHH
Q psy2281 63 --------------------VIILNETDHLT--------------REAQQALRRTMEKYIT--TCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 --------------------~i~ide~d~l~--------------~~~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~~ 106 (287)
++++||+|.+. ......|+..|+.... +..+|.++|.++.++++
T Consensus 248 Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~A 327 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPA 327 (428)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHH
T ss_pred chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChh
Confidence 99999998531 1123456666665433 33566778888999999
Q ss_pred Hhc--ccc-eeecC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHHH
Q psy2281 107 IRS--RCL-CIRIP-APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----SDRNLRRAILMC 162 (287)
Q Consensus 107 l~s--r~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~G~~r~al~~l 162 (287)
+++ |+. .+.|+ .|+.++...+++..+++..+. ++..++.++.. ||.|++..+...
T Consensus 328 llRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 328 LLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp HHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 987 664 58885 678888888998888776652 22235566654 444666655443
No 80
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.59 E-value=6.6e-15 Score=135.92 Aligned_cols=144 Identities=21% Similarity=0.269 Sum_probs=102.4
Q ss_pred CccCcHHHHHHHHHHH------hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------------
Q psy2281 15 KLDFHCKQANHLRNLL------KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------------- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~------~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------------- 62 (287)
+++|...++..+...+ .....++++|+|||||||||+++++++.+..+
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 3677777776665443 12222349999999999999999999887432
Q ss_pred ----------------EEEEeCCCCCCHHH----HHHHHHHHHhcc---------------CCcEEEEEeCCCCCCcHHH
Q psy2281 63 ----------------VIILNETDHLTREA----QQALRRTMEKYI---------------TTCRLILCANSMSQVIPAI 107 (287)
Q Consensus 63 ----------------~i~ide~d~l~~~~----~~~l~~~i~~~~---------------~~~~~i~~~~~~~~l~~~l 107 (287)
++++||++.+.... ++.|++.++... .+..++.++|..+.+.+++
T Consensus 162 ~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL 241 (543)
T 3m6a_A 162 PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241 (543)
T ss_dssp --CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHH
Confidence 88999999988763 466666665321 3456777778888899999
Q ss_pred hcccceeecCCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHHcC--CcHHHH
Q psy2281 108 RSRCLCIRIPAPTHEEIVSVLTNIC-----KKE-----GLTIPPEFALRLAQQSD--RNLRRA 158 (287)
Q Consensus 108 ~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~s~--G~~r~a 158 (287)
++||.++.|+.++.++...++...+ +.. ++.++++++..+.+... |+.|..
T Consensus 242 ~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L 304 (543)
T 3m6a_A 242 RDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSL 304 (543)
T ss_dssp HHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHH
T ss_pred HhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHH
Confidence 9999999999999999988887755 233 34568888888776433 455553
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.58 E-value=4.6e-15 Score=144.10 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=118.8
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------CC----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------GP---------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------~~---------- 62 (287)
.|.+++||..|++++|+...+..+...+..+..++++|+||||+||||+++++++.+. ..
T Consensus 159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~ 238 (854)
T 1qvr_A 159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL 238 (854)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh
Confidence 5889999999999999999988888888777777799999999999999999998761 11
Q ss_pred ---------------------------EEEEeCCCCCC--------HHHHHHHHHHHHhccCCcEEEEEeCCCC----CC
Q psy2281 63 ---------------------------VIILNETDHLT--------REAQQALRRTMEKYITTCRLILCANSMS----QV 103 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~--------~~~~~~l~~~i~~~~~~~~~i~~~~~~~----~l 103 (287)
+++|||++.+. .+..+.+...++. ....+|.+++..+ .+
T Consensus 239 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~ 316 (854)
T 1qvr_A 239 AGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEK 316 (854)
T ss_dssp -------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhcc
Confidence 88899999876 2234456666653 2345666666543 36
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCc------HHHHHHHHHHH
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRN------LRRAILMCEAS 165 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~------~r~al~~l~~~ 165 (287)
.+++.+||..+.++.|+.++...+++.++.. .++.++++++..+++++.|. ..+++..++..
T Consensus 317 d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea 388 (854)
T 1qvr_A 317 DPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 388 (854)
T ss_dssp CTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred CHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHH
Confidence 7889999999999999999999999877664 37778999999999887543 34455555443
No 82
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.58 E-value=6.9e-18 Score=140.52 Aligned_cols=169 Identities=16% Similarity=0.115 Sum_probs=113.0
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+.-.. ....+++.+.+++|+..++. .+..++
T Consensus 27 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~l~~-~tv~en 102 (247)
T 2ff7_A 27 NINLSIKQGEV--IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA-DPNWLRRQVGVVLQDNVLLN-RSIIDN 102 (247)
T ss_dssp EEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS-CHHHHHHHEEEECSSCCCTT-SBHHHH
T ss_pred eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC-CHHHHHhcEEEEeCCCcccc-ccHHHH
Confidence 34444578888 9999999999999999999998766 788888653211 12235566888887764431 233333
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----------HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-----------RLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+..+ ....+.+ .+...++..++ .+...+ ...++|+|+.|| |+...|+++
T Consensus 103 l~~~---------~~~~~~~----~~~~~l~~~~l--~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 103 ISLA---------NPGMSVE----KVIYAAKLAGA--HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp HTTT---------CTTCCHH----HHHHHHHHHTC--HHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred Hhcc---------CCCCCHH----HHHHHHHHhCh--HHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3221 0112332 23344555565 222221 235799998888 666668899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|+.....+.+.+.++.+. |+++|+...+.. +|+++.+
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l 216 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVM 216 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 999999999999998888888887432 779999887754 7776543
No 83
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.58 E-value=2.3e-14 Score=122.90 Aligned_cols=133 Identities=23% Similarity=0.320 Sum_probs=102.1
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLKE-----------G-DFPH-LLFYGPSGAGKKTRIMALLKELYGP--------- 62 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------- 62 (287)
..+..+.+|+++.|...+++.+...+.. | ..+. ++|+||||||||++++++++....+
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 3456778999999999998888877632 2 2222 9999999999999999999876432
Q ss_pred -------------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhcc--CCcEEEEEeCCCC
Q psy2281 63 -------------------------VIILNETDHLTRE--------------AQQALRRTMEKYI--TTCRLILCANSMS 101 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~--~~~~~i~~~~~~~ 101 (287)
++++||+|.+... .+..++..++... .+..++.++|..+
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 8999999976433 2466777777542 2456677777777
Q ss_pred CCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCC
Q psy2281 102 QVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGL 137 (287)
Q Consensus 102 ~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (287)
.+.+++++ |+. .+.++.|+.++..++++..++..++
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~ 204 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV 204 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC
Confidence 88888887 784 6889999999999999988877665
No 84
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=3.2e-14 Score=125.59 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=120.1
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhc---CC-CCcEEEeCCCCCcHHHHHHHHHHHh------CCC-----------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE---GD-FPHLLFYGPSGAGKKTRIMALLKEL------YGP----------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~-~~~~~l~Gp~G~GKTtl~~~l~~~~------~~~----------- 62 (287)
|..+|+| ++++|.....+.+...+.. +. ..+++|+||+|+||||+++.+++.+ ...
T Consensus 13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 4556777 6789999888888887753 33 3349999999999999999998755 111
Q ss_pred -----------------------------------------EEEEeCCCCCCH----HHHHHHHHHHHhc-cCCcEEEEE
Q psy2281 63 -----------------------------------------VIILNETDHLTR----EAQQALRRTMEKY-ITTCRLILC 96 (287)
Q Consensus 63 -----------------------------------------~i~ide~d~l~~----~~~~~l~~~i~~~-~~~~~~i~~ 96 (287)
++++||++.+.. .....+.+.++.. ..+..++++
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 789999887542 2344455555432 234556777
Q ss_pred eCCC---CCCcHHHhccc--ceeecCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcC---CcHHHHHHHHHHHh
Q psy2281 97 ANSM---SQVIPAIRSRC--LCIRIPAPTHEEIVSVLTNICKKEG--LTIPPEFALRLAQQSD---RNLRRAILMCEASK 166 (287)
Q Consensus 97 ~~~~---~~l~~~l~sr~--~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~s~---G~~r~al~~l~~~~ 166 (287)
++.. +.+.+.+++|+ ..+.|++++.+++.+++...+.... ..+++++.+.+++.++ |+.|.++..+....
T Consensus 170 ~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 170 TNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp ESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7665 35777889999 5799999999999999998876532 4568999999999998 99999998887765
Q ss_pred hc
Q psy2281 167 VQ 168 (287)
Q Consensus 167 ~~ 168 (287)
..
T Consensus 250 ~~ 251 (386)
T 2qby_A 250 EI 251 (386)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=3e-15 Score=118.69 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=90.7
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C----------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P---------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~---------- 62 (287)
.|.++|+|..+++++|+......+...+..+..++++|+||+|+||||+++++++.+.. .
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI 90 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh
Confidence 58899999999999999999888888887766667999999999999999999987621 1
Q ss_pred ---------------------------EEEEeCCCCCC---------HHHHHHHHHHHHhccCCcEEEEEeCCCC-----
Q psy2281 63 ---------------------------VIILNETDHLT---------REAQQALRRTMEKYITTCRLILCANSMS----- 101 (287)
Q Consensus 63 ---------------------------~i~ide~d~l~---------~~~~~~l~~~i~~~~~~~~~i~~~~~~~----- 101 (287)
+++|||++.+. ....+.+...++. ....++.+++..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~~~ 168 (187)
T 2p65_A 91 AGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQFI 168 (187)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHHHT
T ss_pred cCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHHHH
Confidence 88999999875 2334455555543 3455677666543
Q ss_pred CCcHHHhcccceeecCCCC
Q psy2281 102 QVIPAIRSRCLCIRIPAPT 120 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~ 120 (287)
.+.+++++||..+.+..|+
T Consensus 169 ~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 169 EKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TTCHHHHHHEEEEECCSCC
T ss_pred hccHHHHHhcCcccCCCCC
Confidence 5789999999888887664
No 86
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.56 E-value=1.8e-18 Score=146.02 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+.-. .....+++.+.+++|+..++. .+..+
T Consensus 36 ~~vsl~i~~Ge~--~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (271)
T 2ixe_A 36 QGLTFTLYPGKV--TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFG-RSFRE 111 (271)
T ss_dssp EEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-BCHHHHHHHEEEECSSCCCCS-SBHHH
T ss_pred EeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEccc-CCHHHHhccEEEEecCCcccc-ccHHH
Confidence 334444578888 9999999999999999999998766 78888865311 112235667888888765432 23334
Q ss_pred CCcHHHhcccceeecCCCCHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVS-----VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
++..+.. . ....++... .+...++..+..++....+.+.++|+|+.|| |+...|.++++|||
T Consensus 112 nl~~~~~-------~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 112 NIAYGLT-------R-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHTTCS-------S-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHhhhcc-------c-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4322110 0 011122211 1223333331111222234566899998888 66666889999999
Q ss_pred cccccCccCccHHHHHHHHHH--H---HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIRDTAK--L---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~~l~~--~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|+.....+.+.+.++.+ . |+++|+...+.. +|+++.+
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l 229 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFL 229 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 999999998888888888754 2 779999887764 7776644
No 87
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.55 E-value=2.5e-17 Score=153.50 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=122.6
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+.++..+++|+. +.+.||||+||||+++++++...+. .|.+|+.+. .......+++.+.+++|++.++. .+.
T Consensus 358 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~v~Q~~~l~~-~tv 433 (582)
T 3b5x_A 358 ALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV-RDYKLTNLRRHFALVSQNVHLFN-DTI 433 (582)
T ss_pred ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh-hhCCHHHHhcCeEEEcCCCcccc-ccH
Confidence 45666666688999 9999999999999999999998765 788898763 22123456777888998876554 466
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
.+|+..+. .+..+++++ .+.++..++. ++....+...++|||+.|| |+...|++
T Consensus 434 ~eni~~~~--------~~~~~~~~~----~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i 501 (582)
T 3b5x_A 434 ANNIAYAA--------EGEYTREQI----EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501 (582)
T ss_pred HHHHhccC--------CCCCCHHHH----HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 66654321 012334333 3444444441 1111222335799999888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|+.....+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l 551 (582)
T 3b5x_A 502 LILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVV 551 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 9999999999999888888888877543 77999998776 57877644
No 88
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.54 E-value=1.3e-13 Score=124.51 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=110.3
Q ss_pred cccc-cCCCCCCCccCcHHHHHHHHHHHhc-----------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281 4 WVDK-YRPNNLQKLDFHCKQANHLRNLLKE-----------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------- 62 (287)
Q Consensus 4 w~~k-~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------- 62 (287)
|.++ ....+|+++.|...++..++..+.. ...|. ++|+|||||||||+++++++....+
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~ 84 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD 84 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence 3444 4455899999999888777776521 23443 9999999999999999999987543
Q ss_pred --------------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhcc--CCcEEEEEeCCC
Q psy2281 63 --------------------------VIILNETDHLTR--------------EAQQALRRTMEKYI--TTCRLILCANSM 100 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~--~~~~~i~~~~~~ 100 (287)
+++|||+|.+.. ..++.|+..++... ....++.++|.+
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 899999988642 12445555565432 234566666666
Q ss_pred CCCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH-HHHHHHHH
Q psy2281 101 SQVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNL-RRAILMCE 163 (287)
Q Consensus 101 ~~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~-r~al~~l~ 163 (287)
+.+.+++.+ ||. .+.+..|+.++..++++..++...+. ++.....++..+.|.. +...+.+.
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHH
Confidence 778888775 774 68899999999999888877765542 2223677888888865 33333333
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.54 E-value=1.3e-13 Score=121.92 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=110.2
Q ss_pred CccCcHHHHHHHHHHHh-------cC-----------------------CCCcEEEeCCCCCcHHHHHHHHHHHhCCC--
Q psy2281 15 KLDFHCKQANHLRNLLK-------EG-----------------------DFPHLLFYGPSGAGKKTRIMALLKELYGP-- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~-------~g-----------------------~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-- 62 (287)
.++|+..+++.+...+. .| ..++++|+||||||||++++++++.+..+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46899988887776651 10 12349999999999999999999876422
Q ss_pred --------------------------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhcc--
Q psy2281 63 --------------------------------------VIILNETDHLTRE--------------AQQALRRTMEKYI-- 88 (287)
Q Consensus 63 --------------------------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~-- 88 (287)
++++||++.+... .++.|++.++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 8999999998876 7889999998431
Q ss_pred -------------------CCcEEEEEeCC-----------------------------------------CCCCcHHHh
Q psy2281 89 -------------------TTCRLILCANS-----------------------------------------MSQVIPAIR 108 (287)
Q Consensus 89 -------------------~~~~~i~~~~~-----------------------------------------~~~l~~~l~ 108 (287)
.+..++.+++. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 33445555441 012568899
Q ss_pred ccc-ceeecCCCCHHHHHHHHHH----HHH----H-----hCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q psy2281 109 SRC-LCIRIPAPTHEEIVSVLTN----ICK----K-----EGLTIPPEFALRLAQQSD---RNLRRAILMCEASKV 167 (287)
Q Consensus 109 sr~-~~~~~~~~~~~~~~~~l~~----~~~----~-----~~~~~~~~~~~~l~~~s~---G~~r~al~~l~~~~~ 167 (287)
+|+ .++.|++++.+++..++.. +++ . .++.+++++.+++++.+. |+.|.+.+.++.++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999 6799999999999888862 222 1 134578999999998865 888888887777654
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.54 E-value=6.2e-14 Score=131.21 Aligned_cols=160 Identities=17% Similarity=0.167 Sum_probs=121.8
Q ss_pred ccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----------------------
Q psy2281 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------------------- 61 (287)
Q Consensus 5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------------------- 61 (287)
..+|||+.+++++|+..+++.+...+..|.. ++|+|||||||||+++++++.+.+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~~--vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKRH--VLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTCC--EEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCCCE--EEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 4689999999999999999999999999977 999999999999999999876520
Q ss_pred --------------------------------------------------------------------------------
Q psy2281 62 -------------------------------------------------------------------------------- 61 (287)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (287)
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence
Q ss_pred -------------CEEEEeCCCCCCHHHHHHHHHHHHhc---------------------cCCcEEEEEeCCC--CCCcH
Q psy2281 62 -------------PVIILNETDHLTREAQQALRRTMEKY---------------------ITTCRLILCANSM--SQVIP 105 (287)
Q Consensus 62 -------------~~i~ide~d~l~~~~~~~l~~~i~~~---------------------~~~~~~i~~~~~~--~~l~~ 105 (287)
.++++||++.++...++.|++.|+.- +.+.++|.++|.. ..+.+
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 07899999999999999999998831 2245677777654 46899
Q ss_pred HHhcccc----eeecCC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHc---CC-------cHHHHHHHHH
Q psy2281 106 AIRSRCL----CIRIPA---PTHEEIVSVLTNICKKEG-----LTIPPEFALRLAQQS---DR-------NLRRAILMCE 163 (287)
Q Consensus 106 ~l~sr~~----~~~~~~---~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~s---~G-------~~r~al~~l~ 163 (287)
++++||. .+.|+. -..+.+...+..+.+..+ ..+++++...+.+.+ .| +.|.+.+.+.
T Consensus 270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 9999994 345543 244556656555544322 467899999988765 55 4777666665
Q ss_pred HHh
Q psy2281 164 ASK 166 (287)
Q Consensus 164 ~~~ 166 (287)
...
T Consensus 350 ~A~ 352 (604)
T 3k1j_A 350 AAG 352 (604)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 91
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=3e-13 Score=113.70 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=108.9
Q ss_pred CCCCccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhC-----------------------------
Q psy2281 12 NLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELY----------------------------- 60 (287)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------------------------- 60 (287)
+|++++|+......+...+.. ....+++|+||+|||||+++++++....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~ 83 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAG 83 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC--
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCccc
Confidence 678899987766655544421 1123399999999999999999986542
Q ss_pred -----------------CCEEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCcH
Q psy2281 61 -----------------GPVIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVIP 105 (287)
Q Consensus 61 -----------------~~~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~~ 105 (287)
+.++++||++.++...|..|++.++.. ..+.++|.++|.. ..+.+
T Consensus 84 ~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~ 163 (265)
T 2bjv_A 84 AFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRA 163 (265)
T ss_dssp -------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCH
T ss_pred ccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccH
Confidence 018999999999999999999998853 2356778877764 24678
Q ss_pred HHhcccc--eeecCCCCH--HHHHHHHHH----HHHHhCC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q psy2281 106 AIRSRCL--CIRIPAPTH--EEIVSVLTN----ICKKEGL----TIPPEFALRLAQQS-DRNLRRAILMCEASKVQ 168 (287)
Q Consensus 106 ~l~sr~~--~~~~~~~~~--~~~~~~l~~----~~~~~~~----~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~ 168 (287)
.+.+|+. .+.++++.. +++...+.. ..+..+. .+++++.+.+...+ .|++|...+.++.++..
T Consensus 164 ~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 164 DLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 8999985 366776654 555554443 3444554 57899999998776 89999988888877654
No 92
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.53 E-value=1.7e-17 Score=146.20 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=117.4
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+++.++..+++|++ +.|.||||||||||+++|++... + .|.+|+.+.-.. ....+++.+.+++|+..++. .+.
T Consensus 36 ~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~-~~~~~rr~ig~v~Q~~~lf~-~tv 110 (390)
T 3gd7_A 36 ILENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI-TLEQWRKAFGVIPQKVFIFS-GTF 110 (390)
T ss_dssp SEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS-CHHHHHHTEEEESCCCCCCS-EEH
T ss_pred EeeceeEEEcCCCE--EEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC-ChHHHhCCEEEEcCCcccCc-cCH
Confidence 34445555678999 99999999999999999999876 4 788898764221 12345677888888875543 233
Q ss_pred CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----------HcCCcHHH-----HHHHHH
Q psy2281 100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ-----------QSDRNLRR-----AILMCE 163 (287)
Q Consensus 100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-----------~s~G~~r~-----al~~l~ 163 (287)
.+|+.. +..... +.+.+.++..++ .+...+++.+ +|+|+.|| |+...|
T Consensus 111 ~enl~~----------~~~~~~----~~v~~~l~~~~L--~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 111 RKNLDP----------NAAHSD----QEIWKVADEVGL--RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp HHHHCT----------TCCSCH----HHHHHHHHHTTC--HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHhhh----------ccccCH----HHHHHHHHHhCC--HHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 343321 122233 234456666676 4444555555 89998888 777788
Q ss_pred HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++++|||++++|......+.+.+.++... ++++|+.+.+. .+|+++.|
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl 226 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVI 226 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEE
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEE
Confidence 999999999999988877777777665433 77899986654 47877644
No 93
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.52 E-value=2e-18 Score=144.81 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=112.9
Q ss_pred HHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHH-hccCCcEEEEEeCCCCCC
Q psy2281 27 RNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTME-KYITTCRLILCANSMSQV 103 (287)
Q Consensus 27 ~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~-~~~~~~~~i~~~~~~~~l 103 (287)
+..++ |+. ++|.||||+|||||++++++.. +. .|.+++.+. ... .. ++.+. +++|+..+ ..+..+++
T Consensus 25 sl~i~-Ge~--~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~-~~~--~~-~~~i~~~v~Q~~~l--~~tv~enl 94 (263)
T 2pjz_A 25 NLEVN-GEK--VIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV-RKI--RN-YIRYSTNLPEAYEI--GVTVNDIV 94 (263)
T ss_dssp EEEEC-SSE--EEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG-GGC--SC-CTTEEECCGGGSCT--TSBHHHHH
T ss_pred eEEEC-CEE--EEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC-cch--HH-hhheEEEeCCCCcc--CCcHHHHH
Confidence 33457 888 9999999999999999999998 76 778887542 110 11 23456 66666543 22333444
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
..... +..... +.+.+.++..++ + +...+.+.++|+|+.|| |+...|.++++|||++++|+
T Consensus 95 ~~~~~-------~~~~~~----~~~~~~l~~~gl--~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 161 (263)
T 2pjz_A 95 YLYEE-------LKGLDR----DLFLEMLKALKL--GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161 (263)
T ss_dssp HHHHH-------HTCCCH----HHHHHHHHHTTC--CGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCH
T ss_pred HHhhh-------hcchHH----HHHHHHHHHcCC--ChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCH
Confidence 33211 112222 345566677777 5 55556688999999888 66667889999999999999
Q ss_pred ccCccHHHHHHHHHHH-HHhccChhHHHHHHH-HHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL-IISEQSPKKLLEVRT-RLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~-~~~~l 213 (287)
.....+.+.+.++.+. ++++|+.+.+..+++ +++.+
T Consensus 162 ~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l 199 (263)
T 2pjz_A 162 ARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFL 199 (263)
T ss_dssp HHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEE
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEE
Confidence 8887777777665433 669999998888888 76543
No 94
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.52 E-value=3.6e-15 Score=125.69 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=100.9
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------- 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------- 62 (287)
.++.+..|++++|+..+++.+...+. ....+. ++|+||||||||++++++++....+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46778899999999887777776653 122333 9999999999999999999876422
Q ss_pred -----------------------EEEEeCCCCCCHHH---------------HHHHHHHHHhccC---CcEEEEEeCCCC
Q psy2281 63 -----------------------VIILNETDHLTREA---------------QQALRRTMEKYIT---TCRLILCANSMS 101 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~~~---------------~~~l~~~i~~~~~---~~~~i~~~~~~~ 101 (287)
+++|||+|.+.... +..++..++.... ...++.+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 89999999875432 2234444443322 134555566666
Q ss_pred CCcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281 102 QVIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153 (287)
Q Consensus 102 ~l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G 153 (287)
.+.+++.+ |+ ..+.|+.|+.++..++++..++..++. ++.....++..+.|
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g 216 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAG 216 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCC
Confidence 78888887 55 458899999999999998887655442 22224556666655
No 95
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=6.6e-14 Score=134.56 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=114.7
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------------------- 61 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------------------- 61 (287)
.|.++++|..|++++|+...+..+...+.....++++|+||||||||++++++++.+..
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~ 254 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh
Confidence 58899999999999999999888888887766667999999999999999999987610
Q ss_pred -------------------------CEEEEeCCCCCC---------HHHHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281 62 -------------------------PVIILNETDHLT---------REAQQALRRTMEKYITTCRLILCANSMS-----Q 102 (287)
Q Consensus 62 -------------------------~~i~ide~d~l~---------~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~ 102 (287)
.+++|||++.+. .+..+.|...++. ....++.+++..+ .
T Consensus 255 ~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~ 332 (758)
T 1r6b_X 255 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFE 332 (758)
T ss_dssp CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCC
T ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhh
Confidence 189999999872 2223333322221 2345566655432 3
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDR 153 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G 153 (287)
+.+++.+||..+.|..|+.++..+++..+++. .++.++++++..++.++.|
T Consensus 333 ~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 333 KDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp CTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 56789999999999999999999998887765 5778899999998887765
No 96
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.51 E-value=2.3e-13 Score=130.76 Aligned_cols=137 Identities=15% Similarity=0.302 Sum_probs=107.6
Q ss_pred CCccCcHHHHHHHHHHHhcC-------CCC--cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKEG-------DFP--HLLFYGPSGAGKKTRIMALLKELYGP---------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~g-------~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------- 62 (287)
+.++|+..++..+...+... ..| +++|+||||||||+++++++..+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence 45788888887777777421 112 49999999999999999999986221
Q ss_pred -----------EEEEeCCCCCCHHHHHHHHHHHHh-----------ccCCcEEEEEeCCCCC------------CcHHHh
Q psy2281 63 -----------VIILNETDHLTREAQQALRRTMEK-----------YITTCRLILCANSMSQ------------VIPAIR 108 (287)
Q Consensus 63 -----------~i~ide~d~l~~~~~~~l~~~i~~-----------~~~~~~~i~~~~~~~~------------l~~~l~ 108 (287)
++++||++.++.+.++.|++.++. .+.++.+|+++|.... +.+.+.
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 899999999999999999999987 3456788888886443 778899
Q ss_pred ccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281 109 SRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ 150 (287)
Q Consensus 109 sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~ 150 (287)
+|+ .++.|++++.+++..++...+... .+.+++++.+++++.
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 702 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEE 702 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGG
T ss_pred hhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHh
Confidence 999 689999999999999888877653 345689999999764
No 97
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.50 E-value=4e-17 Score=136.95 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=110.6
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++.+.-. .....+++.+.+++|++.++. .+..+++
T Consensus 38 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl 113 (260)
T 2ghi_A 38 SINFFIPSGTT--CALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNK-YNRNSIRSIIGIVPQDTILFN-ETIKYNI 113 (260)
T ss_dssp EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGG-BCHHHHHTTEEEECSSCCCCS-EEHHHHH
T ss_pred eeEEEECCCCE--EEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhh-cCHHHHhccEEEEcCCCcccc-cCHHHHH
Confidence 34444578888 9999999999999999999987533 78888765311 112234556777777765432 2444443
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
..+. ...+.++ +...++..++ .+... +...++|+|+.|| |+...|.+++
T Consensus 114 ~~~~---------~~~~~~~----~~~~l~~~~l--~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 114 LYGK---------LDATDEE----VIKATKSAQL--YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HTTC---------TTCCHHH----HHHHHHHTTC--HHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred hccC---------CCCCHHH----HHHHHHHhCC--HHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2210 1122322 2334444444 12110 1235789998888 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|+.....+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~-~d~i~~l 226 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS-AESIILL 226 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT-CSEEEEE
T ss_pred EECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEE
Confidence 99999999999888888888877543 779999887754 7776643
No 98
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.49 E-value=1.9e-12 Score=110.97 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=112.0
Q ss_pred CccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------------
Q psy2281 15 KLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELYG------------------------------- 61 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------------- 61 (287)
+++|+......+...+.. ....+++|+||+|+|||+++++++.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~t 82 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFT 82 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccC
Confidence 567776665555555432 22233999999999999999999875310
Q ss_pred ---------------CEEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCCC-------CCCcHHHh
Q psy2281 62 ---------------PVIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANSM-------SQVIPAIR 108 (287)
Q Consensus 62 ---------------~~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~~-------~~l~~~l~ 108 (287)
.++++||++.++...|..|++.++... .+.++|.++|.. ..+.+.+.
T Consensus 83 g~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~ 162 (304)
T 1ojl_A 83 GADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp ---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred chhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence 089999999999999999999988642 346777777664 13566788
Q ss_pred cccce--eecCCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281 109 SRCLC--IRIPAPT--HEEIVSVLTNICK----KEG---LTIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 109 sr~~~--~~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d 169 (287)
+|+.. +.++++. .+++...+...++ ..+ ..+++++.+.+..++ .|++|...+.++.++...
T Consensus 163 ~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 163 YRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred hhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 88754 5566665 4566555555443 333 457999999999998 999999999999877654
No 99
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.48 E-value=1.5e-13 Score=124.98 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=110.2
Q ss_pred ccCCCCCCCccCcHHHHHHHHHHHhc------------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281 7 KYRPNNLQKLDFHCKQANHLRNLLKE------------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP----------- 62 (287)
Q Consensus 7 k~~p~~~~~~~~~~~~~~~l~~~~~~------------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~----------- 62 (287)
..++..+++++|.......+...+.. ...+ +++|+||||||||++++++++....+
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence 45677899999999888888777632 1233 39999999999999999999876433
Q ss_pred -----------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhccC--CcEEEEEeCCCCCCcHH
Q psy2281 63 -----------------------VIILNETDHLTR-----------EAQQALRRTMEKYIT--TCRLILCANSMSQVIPA 106 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~~ 106 (287)
++++||+|.+.. ..+..|++.++.... +..++.++|..+.+.++
T Consensus 277 ~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 899999975532 456778888886533 34566667777778999
Q ss_pred Hhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281 107 IRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157 (287)
Q Consensus 107 l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~ 157 (287)
+++ |+. .+.+..|+.++..+++...++...+. .+..+..++..+.|...+
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~ 409 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGA 409 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHH
Confidence 988 553 58899999999999999888766654 222356667666664333
No 100
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=4.3e-13 Score=128.89 Aligned_cols=138 Identities=23% Similarity=0.273 Sum_probs=108.1
Q ss_pred CCccCcHHHHHHHHHHHhc---CC----CC--cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKE---GD----FP--HLLFYGPSGAGKKTRIMALLKELYGP---------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~---g~----~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------- 62 (287)
+.++|+..++..+...+.. |- .| +++|+||+|||||+++++++..+..+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 3577888888777666632 21 12 49999999999999999999876411
Q ss_pred ----------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCC--------
Q psy2281 63 ----------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMS-------- 101 (287)
Q Consensus 63 ----------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~-------- 101 (287)
++++||++.++++.++.|++.++.. +.++.+|+++|...
T Consensus 538 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~ 617 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_dssp SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-------
T ss_pred CCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhccc
Confidence 8999999999999999999999853 24556777777632
Q ss_pred -----------------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHc
Q psy2281 102 -----------------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQS 151 (287)
Q Consensus 102 -----------------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~s 151 (287)
.+.+++.+|| .++.|++++.+++..++...+.+. .+.+++++.+++++.+
T Consensus 618 g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 618 GLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp ----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhC
Confidence 4678899999 679999999999999998877643 3456899999999866
No 101
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.48 E-value=2.5e-16 Score=130.90 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=111.8
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l 103 (287)
++..+++|+. ++|.||||||||||+++|++...+. .|.+++.+.-... ...+++.+.+++|+..++. .+..+++
T Consensus 21 vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~l~~-~tv~enl 96 (243)
T 1mv5_A 21 ISFEAQPNSI--IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS-LENWRSQIGFVSQDSAIMA-GTIRENL 96 (243)
T ss_dssp EEEEECTTEE--EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTS-CSCCTTTCCEECCSSCCCC-EEHHHHT
T ss_pred eEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHHHhhEEEEcCCCcccc-ccHHHHH
Confidence 3444577888 9999999999999999999988765 6778875421100 1123445777777765433 2444444
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----------HHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----------ALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
..+.. ...+.+. +...++..++. +.. .+...++|+|+.|| |+...|++++
T Consensus 97 ~~~~~--------~~~~~~~----~~~~l~~~~l~--~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll 162 (243)
T 1mv5_A 97 TYGLE--------GDYTDED----LWQVLDLAFAR--SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162 (243)
T ss_dssp TSCTT--------SCSCHHH----HHHHHHHHTCT--TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred hhhcc--------CCCCHHH----HHHHHHHhChH--HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 32211 1123332 34445555551 111 12245789998888 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|+.....+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 163 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 210 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFI 210 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEE
Confidence 99999999999999999999888633 77999988765 47776543
No 102
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.46 E-value=1e-16 Score=149.79 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=117.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|+. +.+.||||+||||+++++++...+. .|.+|+.+.- .-....+++.+.+++|++.++ ..+..+
T Consensus 372 ~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~-~~~~~~~r~~i~~v~Q~~~lf-~~tv~e 447 (598)
T 3qf4_B 372 KDITFHIKPGQK--VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLRSSIGIVLQDTILF-STTVKE 447 (598)
T ss_dssp CSEEEECCTTCE--EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGG-GSCHHHHHHHEEEECTTCCCC-SSBHHH
T ss_pred cceEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhh-hCCHHHHHhceEEEeCCCccc-cccHHH
Confidence 344444577888 9999999999999999999998876 8889987642 212346778899999987543 234444
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL---------TIPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
|+..+ -+..+++++.+ .++..++ .++....+...++|||+.|| |+...|++++
T Consensus 448 ni~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill 514 (598)
T 3qf4_B 448 NLKYG---------NPGATDEEIKE----AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514 (598)
T ss_dssp HHHSS---------STTCCTTHHHH----HTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHhcC---------CCCCCHHHHHH----HHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44221 11223333333 2222222 01111223446789998888 6667789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|+.....+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 515 lDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 562 (598)
T 3qf4_B 515 LDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVL 562 (598)
T ss_dssp ECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEE
T ss_pred EECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 99999999999888888888877544 779999998765 7877644
No 103
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.46 E-value=1.3e-12 Score=109.07 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred ccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------- 62 (287)
Q Consensus 3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------- 62 (287)
.+.....+.+|++++|...++..++..... -..|. ++|+|||||||||+++++++.....
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 345667788999999988877666655421 12232 8999999999999999999876422
Q ss_pred --------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC-CcEE-EEEeCCC
Q psy2281 63 --------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT-TCRL-ILCANSM 100 (287)
Q Consensus 63 --------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~-~~~~-i~~~~~~ 100 (287)
++++||+|.+.. . ..+.+...++...+ ...+ +.+++.+
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p 164 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 164 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence 888999875421 1 12233334443322 2333 3455566
Q ss_pred CCCcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcH
Q psy2281 101 SQVIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNL 155 (287)
Q Consensus 101 ~~l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~ 155 (287)
+.+.+++++ |+ ..+.++.|+.++..++++..++... ++++ ....++..+.|..
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCC
Confidence 778888888 44 3588999999999998887765433 3433 3677888887744
No 104
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.45 E-value=1.7e-16 Score=148.26 Aligned_cols=172 Identities=15% Similarity=0.066 Sum_probs=115.3
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|+. +.|.|||||||||+++++++...+. .|.+|+.+.-. -....+++.+.+++|++.++. .+..+|
T Consensus 362 ~isl~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~en 437 (595)
T 2yl4_A 362 DFSLSIPSGSV--TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ-LNPVWLRSKIGTVSQEPILFS-CSIAEN 437 (595)
T ss_dssp EEEEEECTTCE--EEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTT-BCHHHHHHSEEEECSSCCCCS-SBHHHH
T ss_pred ceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhh-CCHHHHHhceEEEccCCcccC-CCHHHH
Confidence 34444578888 9999999999999999999998766 78899866321 112346677888888875532 344444
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----------HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-----------RLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+..+... ....+++++ .+.++..++ .+...+ ...++|||+.|| |+...|+++
T Consensus 438 i~~~~~~------~~~~~~~~~----~~~~~~~~l--~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 438 IAYGADD------PSSVTAEEI----QRVAEVANA--VAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp HHTTSSS------TTTSCHHHH----HHHHHHTTC--HHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred HhhcCCC------ccccCHHHH----HHHHHHcCC--HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 4322100 011334333 344454554 221111 115688898888 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|+.....+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 506 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l 554 (595)
T 2yl4_A 506 LLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVL 554 (595)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEE
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEE
Confidence 999999999999888888888887654 779999887754 7776643
No 105
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.45 E-value=6.6e-16 Score=143.96 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|+. +.+.|||||||||+++++++...+. .|.+|+.+.-. .....+++.+.+++|++.++. .+..+
T Consensus 360 ~~v~~~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~e 435 (582)
T 3b60_A 360 RNINLKIPAGKT--VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE-YTLASLRNQVALVSQNVHLFN-DTVAN 435 (582)
T ss_dssp EEEEEEECTTCE--EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT-BCHHHHHHTEEEECSSCCCCS-SBHHH
T ss_pred cceeEEEcCCCE--EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc-cCHHHHHhhCeEEccCCcCCC-CCHHH
Confidence 334444578888 9999999999999999999998776 78899866321 113446677888888875532 34444
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----------HHHHHcCCcHHH-----HHHHHHHH
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-----------RLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~l~~~s~G~~r~-----al~~l~~~ 165 (287)
|+..+. .+..++++ +.+.++..++ .+...+ ...++|||+.|| |+...|++
T Consensus 436 ni~~~~--------~~~~~~~~----~~~~l~~~~l--~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i 501 (582)
T 3b60_A 436 NIAYAR--------TEEYSREQ----IEEAARMAYA--MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_dssp HHHTTT--------TSCCCHHH----HHHHHHTTTC--HHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred HHhccC--------CCCCCHHH----HHHHHHHcCC--HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 443221 01233433 3444555555 222222 124689998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|+.....+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l 551 (582)
T 3b60_A 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVV 551 (582)
T ss_dssp EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEE
Confidence 9999999999999888888888887544 77999998775 47776644
No 106
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.44 E-value=6.1e-13 Score=112.28 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=86.6
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------EEEEeCCCCC---------
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKELYGP-----------------------------------VIILNETDHL--------- 72 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------~i~ide~d~l--------- 72 (287)
+++|+||+|||||++++++++....+ ++++||+|.+
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~ 145 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR 145 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChh
Confidence 39999999999999999999876433 8999998875
Q ss_pred -CHHHHHHHHHHHHhcc--CCcE-EEEEeCCCCCCcH-HHhccc-ceeecCCCCH-HHHHHHHHHHHHHhCCCCCHHHHH
Q psy2281 73 -TREAQQALRRTMEKYI--TTCR-LILCANSMSQVIP-AIRSRC-LCIRIPAPTH-EEIVSVLTNICKKEGLTIPPEFAL 145 (287)
Q Consensus 73 -~~~~~~~l~~~i~~~~--~~~~-~i~~~~~~~~l~~-~l~sr~-~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 145 (287)
....++.|...++... .... ++.+++..+.+.+ .+++|+ ..+.+++++. +++...+.. ..+ ++++...
T Consensus 146 ~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~~~--~~~~~~~ 220 (272)
T 1d2n_A 146 FSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---LGN--FKDKERT 220 (272)
T ss_dssp CCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---HTC--SCHHHHH
T ss_pred HHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh---cCC--CCHHHHH
Confidence 3334455555555421 1223 3444444443444 467885 5688877765 555544443 223 4888999
Q ss_pred HHHHHcCC-----cHHHHHHHHHHHhh
Q psy2281 146 RLAQQSDR-----NLRRAILMCEASKV 167 (287)
Q Consensus 146 ~l~~~s~G-----~~r~al~~l~~~~~ 167 (287)
.+++.+.| ++|++++.++....
T Consensus 221 ~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 221 TIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 99999988 89999999987754
No 107
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.42 E-value=3.7e-12 Score=115.73 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=104.8
Q ss_pred cccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------- 62 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------- 62 (287)
|.+. .+.+|+++.|..+++..++..+.. ...|. ++|+|||||||||+++++++....+
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 3344 678899999999888777766521 22343 9999999999999999999876422
Q ss_pred -------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC-CcEEEE-EeCCCC
Q psy2281 63 -------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT-TCRLIL-CANSMS 101 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~-~~~~i~-~~~~~~ 101 (287)
++++||+|.+.. . ..+.++..++.... ...+++ +++.++
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~ 180 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 180 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGG
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChh
Confidence 899999987531 1 12333333433222 233444 444455
Q ss_pred CCcHHHhccc---ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcH-HHHHHHHHHH
Q psy2281 102 QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNL-RRAILMCEAS 165 (287)
Q Consensus 102 ~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~-r~al~~l~~~ 165 (287)
.+.+++.+++ ..+.+..|+.++..++++..++. +.++++ ....++..+.|.. +..-+.+..+
T Consensus 181 ~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred hcCcccccccccceEEecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6788888744 36889999999998888766543 333433 3677888888865 4444444443
No 108
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.42 E-value=3e-16 Score=146.16 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=115.5
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|+. +.++||||+||||+++++++...+. .|.+|+.+. ..-....+++.+.+++|++.++ ..+..+
T Consensus 358 ~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~-~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e 433 (578)
T 4a82_A 358 KDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI-KDFLTGSLRNQIGLVQQDNILF-SDTVKE 433 (578)
T ss_dssp EEEEEEECTTCE--EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG-GGSCHHHHHHTEEEECSSCCCC-SSBHHH
T ss_pred eeeEEEECCCCE--EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh-hhCCHHHHhhheEEEeCCCccC-cccHHH
Confidence 344444578888 9999999999999999999998876 888998763 2212345677888888887543 234445
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHHH
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~~ 165 (287)
|+..+ .+..+++++. +.++..++ .+... +...++|||+.|| |+...|++
T Consensus 434 ni~~~---------~~~~~~~~~~----~~~~~~~~--~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i 498 (578)
T 4a82_A 434 NILLG---------RPTATDEEVV----EAAKMANA--HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498 (578)
T ss_dssp HHGGG---------CSSCCHHHHH----HHHHHTTC--HHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred HHhcC---------CCCCCHHHHH----HHHHHhCc--HHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 54322 1123344433 33333343 11111 2224688998888 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|||++++|+.....+.+.+.++.+. ++++|+...+.. +|+++.+
T Consensus 499 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 548 (578)
T 4a82_A 499 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVI 548 (578)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 9999999999988877777777766543 779999988765 7777644
No 109
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.39 E-value=2.5e-16 Score=144.71 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=102.6
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
.+|++ +.|.||||||||||+++|++...+. .|.+++.. +.+.+++....+..+..+++.. ..
T Consensus 292 ~~Gei--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------i~~~~q~~~~~~~~tv~~~l~~-~~ 355 (538)
T 3ozx_A 292 KEGEI--IGILGPNGIGKTTFARILVGEITADEGSVTPEKQI-------------LSYKPQRIFPNYDGTVQQYLEN-AS 355 (538)
T ss_dssp ETTCE--EEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCC-------------EEEECSSCCCCCSSBHHHHHHH-HC
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCee-------------eEeechhcccccCCCHHHHHHH-hh
Confidence 46777 9999999999999999999988765 34443321 2222222110000011111111 00
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW 183 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~ 183 (287)
. .+.... ...+.++++..++ .+...+.+.++|||+.|| |+...|.++++||||+++|......+
T Consensus 356 ~-----~~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 356 K-----DALSTS----SWFFEEVTKRLNL--HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp S-----STTCTT----SHHHHHTTTTTTG--GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred h-----hccchh----HHHHHHHHHHcCC--HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 0 010011 1234455555555 444556778899999998 66667889999999999999999999
Q ss_pred HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 425 AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998764 77999999999999988744
No 110
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.39 E-value=1.3e-11 Score=104.47 Aligned_cols=146 Identities=20% Similarity=0.279 Sum_probs=97.8
Q ss_pred cCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281 8 YRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP------------- 62 (287)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~------------- 62 (287)
..+.+|++++|..+++..++..... -..+ +++|+|||||||||+++++++.....
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 3567899999998887766665521 1223 38999999999999999999876422
Q ss_pred ---------------------EEEEeCCCCCC-----------HHHHHHHHHH---HHhcc-CCc-EEEEEeCCCCCCcH
Q psy2281 63 ---------------------VIILNETDHLT-----------REAQQALRRT---MEKYI-TTC-RLILCANSMSQVIP 105 (287)
Q Consensus 63 ---------------------~i~ide~d~l~-----------~~~~~~l~~~---i~~~~-~~~-~~i~~~~~~~~l~~ 105 (287)
++++||++.+. ......+.+. ++... +.. .++.+++.++.+.+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 78899987531 1112222233 33222 222 34445666777888
Q ss_pred HHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcH
Q psy2281 106 AIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNL 155 (287)
Q Consensus 106 ~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~ 155 (287)
++.+ |+ ..+.++.|+.++..++++..++... ++++ ....++..+.|..
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC--CCcccCHHHHHHHcCCCC
Confidence 9887 44 3688999999999999887765433 3433 3677888888755
No 111
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=1.4e-12 Score=126.75 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=114.1
Q ss_pred CCccCcHHHHHHHHHHHhcCC-------C--CcEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKEGD-------F--PHLLFYGPSGAGKKTRIMALLKELYGP---------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~g~-------~--~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------- 62 (287)
+.++|+..++..+...+.... . .+++|+||+|||||+++++++..+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~ 637 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 637 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHc
Confidence 457888888888877774321 1 249999999999999999999876210
Q ss_pred -------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCCC------
Q psy2281 63 -------------------------VIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANSM------ 100 (287)
Q Consensus 63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~~------ 100 (287)
++++||++.++.+.++.|++.++... .++.+|+++|..
T Consensus 638 g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~ 717 (854)
T 1qvr_A 638 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 717 (854)
T ss_dssp -------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHH
T ss_pred CCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhh
Confidence 89999999999999999999998542 345577777651
Q ss_pred --------------------CCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281 101 --------------------SQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ 150 (287)
Q Consensus 101 --------------------~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~ 150 (287)
..+.+.+.+|+ .++.|.+++.+++..++...++.. .+.+++++.+++++.
T Consensus 718 ~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~ 797 (854)
T 1qvr_A 718 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER 797 (854)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHc
Confidence 23567788999 567889999999998888776532 245799999999987
Q ss_pred cC---CcHHHHHHHHHHH
Q psy2281 151 SD---RNLRRAILMCEAS 165 (287)
Q Consensus 151 s~---G~~r~al~~l~~~ 165 (287)
+. |+.|..-+.++..
T Consensus 798 ~~~~~gn~R~L~~~i~~~ 815 (854)
T 1qvr_A 798 GYDPVFGARPLRRVIQRE 815 (854)
T ss_dssp HCBTTTBTSTHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHH
Confidence 65 7777655555543
No 112
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.39 E-value=2.9e-16 Score=129.34 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=96.1
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ ++|.||||||||||++++++.+.+. .|.+++ .+.+++|+..++. .+..++
T Consensus 26 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------~i~~v~q~~~~~~-~tv~en 88 (229)
T 2pze_A 26 DINFKIERGQL--LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RISFCSQFSWIMP-GTIKEN 88 (229)
T ss_dssp EEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------------CEEEECSSCCCCS-BCHHHH
T ss_pred eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------------EEEEEecCCcccC-CCHHHH
Confidence 34444578888 9999999999999999999998766 677776 1556666554322 233333
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+..+ ....... ....++..++ .+... +...++|+|+.|| |+...|+++
T Consensus 89 l~~~----------~~~~~~~----~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 89 IIFG----------VSYDEYR----YRSVIKACQL--EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp HHTT----------SCCCHHH----HHHHHHHTTC--HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhcc----------CCcChHH----HHHHHHHhCc--HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 3211 0112211 1222233333 11110 1135789998888 666668899
Q ss_pred hcCCCcccccCccCccHHHH-HHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIY-IRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~-i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++|||++++|+.....+.+. +.++.+. ++++|+...+. .+|+++.+
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 99999999998877666654 2333222 67999987765 47766533
No 113
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.36 E-value=1.6e-12 Score=123.64 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=100.6
Q ss_pred CCCCCccCcHHHHHHHHHHHh-----------cCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLK-----------EGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~-----------~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
-+|+++.|....++.|+..+. -|- .|. ++|+||||||||++++++|+++...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 468889998877777776651 132 233 9999999999999999999887644
Q ss_pred -------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhccCC--cEEEEEeCCCCCCcHHHhc-
Q psy2281 63 -------------------VIILNETDHLTR-----------EAQQALRRTMEKYITT--CRLILCANSMSQVIPAIRS- 109 (287)
Q Consensus 63 -------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~l~s- 109 (287)
+|+|||+|.+.+ ...+.|+..|+....+ ..++.++|.++.+.+++++
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~ 360 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTST
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCC
Confidence 999999998742 1234566666665433 3455666777889999988
Q ss_pred -ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281 110 -RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153 (287)
Q Consensus 110 -r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G 153 (287)
|+. .+.++.|+.++..++++..++...+. ++..+..++..+.|
T Consensus 361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 405 (806)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCS
T ss_pred cccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCC
Confidence 774 68999999999999988776554432 22235556665443
No 114
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=2.9e-12 Score=101.30 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=70.8
Q ss_pred ccccCCCCCCCccC----cHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CC----------
Q psy2281 5 VDKYRPNNLQKLDF----HCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELY---GP---------- 62 (287)
Q Consensus 5 ~~k~~p~~~~~~~~----~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~---------- 62 (287)
++||++.+|+++++ +..+...+..+++ +|+. ++|+||||+||||+++++++.+. +.
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKG--LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCE--EEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCE--EEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 46899999999986 3455666666664 3444 99999999999999999998873 21
Q ss_pred ------------------------EEEEeCCC--CCCHHHHHHHHHHHHhcc-CCcEEEEEeCCCCC
Q psy2281 63 ------------------------VIILNETD--HLTREAQQALRRTMEKYI-TTCRLILCANSMSQ 102 (287)
Q Consensus 63 ------------------------~i~ide~d--~l~~~~~~~l~~~i~~~~-~~~~~i~~~~~~~~ 102 (287)
++++||++ .++...+..+...+.... +...++++++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 89999998 456666667777776553 45567777766544
No 115
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.35 E-value=6.3e-12 Score=110.50 Aligned_cols=135 Identities=21% Similarity=0.296 Sum_probs=94.5
Q ss_pred ccCcHHHHHHHHHHHh-------------cC--CCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281 16 LDFHCKQANHLRNLLK-------------EG--DFPHLLFYGPSGAGKKTRIMALLKELYGP------------------ 62 (287)
Q Consensus 16 ~~~~~~~~~~l~~~~~-------------~g--~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------ 62 (287)
++|+..+++.+...+. .. ...+++|+||||||||++++++++.+..+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 5888888888777662 11 12349999999999999999999876433
Q ss_pred ----------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhc-------------------
Q psy2281 63 ----------------------VIILNETDHLTRE--------------AQQALRRTMEKY------------------- 87 (287)
Q Consensus 63 ----------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~------------------- 87 (287)
++++||+|.+... .++.|++.|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 8999999976643 688899988821
Q ss_pred --cCCcEEEEEeCCC----------CC-----------------------------------CcHHHhcccce-eecCCC
Q psy2281 88 --ITTCRLILCANSM----------SQ-----------------------------------VIPAIRSRCLC-IRIPAP 119 (287)
Q Consensus 88 --~~~~~~i~~~~~~----------~~-----------------------------------l~~~l~sr~~~-~~~~~~ 119 (287)
..+..++++++.. .. +.+.+.+|+.. +.|.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 1223344444421 11 57888999964 568999
Q ss_pred CHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHH
Q psy2281 120 THEEIVSVLTN----ICK-------KEG--LTIPPEFALRLAQQ 150 (287)
Q Consensus 120 ~~~~~~~~l~~----~~~-------~~~--~~~~~~~~~~l~~~ 150 (287)
+.+++.+++.. +++ ..+ +.+++++.+.+++.
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~ 300 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 300 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHh
Confidence 99888877765 322 123 34688898888864
No 116
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.35 E-value=2.9e-11 Score=103.14 Aligned_cols=117 Identities=16% Similarity=0.249 Sum_probs=79.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--------------------------------------EEEEeCCCCCCHH----
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--------------------------------------VIILNETDHLTRE---- 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------------------~i~ide~d~l~~~---- 75 (287)
++|+||||||||++++++++.+..+ +++|||+|.+...
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~ 118 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 118 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCC
Confidence 8899999999999999999887533 8999999876541
Q ss_pred ---------HHHHHHHHHHhc-------------cCCcEEEEEeCCCCCCcHHHhc--ccceeecCCCCHHHHHHHHHHH
Q psy2281 76 ---------AQQALRRTMEKY-------------ITTCRLILCANSMSQVIPAIRS--RCLCIRIPAPTHEEIVSVLTNI 131 (287)
Q Consensus 76 ---------~~~~l~~~i~~~-------------~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~~~~~~~~~~l~~~ 131 (287)
.+..|+..++.. ..+..+|.++|..+.+.+++++ |+...-+ .|+.++..++++..
T Consensus 119 ~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~ 197 (293)
T 3t15_A 119 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGI 197 (293)
T ss_dssp -----CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHh
Confidence 235666666521 2345677888888889999885 6643223 46999999999988
Q ss_pred HHHhCCCCCHHHHHHHHHHcCCcHH
Q psy2281 132 CKKEGLTIPPEFALRLAQQSDRNLR 156 (287)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~s~G~~r 156 (287)
+...++. .+...+.....++.++.
T Consensus 198 ~~~~~~~-~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 198 FRTDNVP-AEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HGGGCCC-HHHHHHHHHHSCSCCHH
T ss_pred ccCCCCC-HHHHHHHhCCCCcccHH
Confidence 8877774 23334445556776664
No 117
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.34 E-value=1e-15 Score=142.54 Aligned_cols=154 Identities=16% Similarity=0.090 Sum_probs=104.6
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
..|++ +.|.||||+|||||+++|++.+.+. .|.++ ..+.+++|+....+..++.+.+.....
T Consensus 380 ~~Gei--~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~--------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~ 443 (607)
T 3bk7_A 380 RKGEV--IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------------LTVAYKPQYIKAEYEGTVYELLSKIDS 443 (607)
T ss_dssp ETTCE--EEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC--------------CCEEEECSSCCCCCSSBHHHHHHHHHH
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEEe--------------eEEEEEecCccCCCCCcHHHHHHhhhc
Confidence 46888 9999999999999999999987654 22210 124445554322111111111100000
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW 183 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~ 183 (287)
.. + ...+.+.++++..++ .+...+.+.++|||+.|| |+...+.++++|||++++|......+
T Consensus 444 ~~-----~------~~~~~~~~~l~~~~l--~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l 510 (607)
T 3bk7_A 444 SK-----L------NSNFYKTELLKPLGI--IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510 (607)
T ss_dssp HH-----H------HCHHHHHHTHHHHTC--TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred cC-----C------CHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHH
Confidence 00 0 112345566777777 445566788999999998 55566789999999999999999999
Q ss_pred HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 511 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl 545 (607)
T 3bk7_A 511 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545 (607)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998653 78999999999999987644
No 118
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.34 E-value=2.4e-14 Score=133.42 Aligned_cols=172 Identities=16% Similarity=0.100 Sum_probs=116.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|+. +.+.|||||||||+++++++.+.+. .|.+|+.+.- .-....+++.+.+++|++.++ ..+..+
T Consensus 360 ~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf-~~tv~e 435 (587)
T 3qf4_A 360 SGVNFSVKPGSL--VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR-TVKLKDLRGHISAVPQETVLF-SGTIKE 435 (587)
T ss_dssp EEEEEEECTTCE--EEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG-GBCHHHHHHHEEEECSSCCCC-SEEHHH
T ss_pred eceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc-cCCHHHHHhheEEECCCCcCc-CccHHH
Confidence 344444577888 9999999999999999999998776 8899988742 222445778899999987654 334555
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEASKV 167 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~ 167 (287)
|+..+ .+..+++++.+.+ +..++. ++....+...++|||+.|| |+...|++++
T Consensus 436 ni~~~---------~~~~~~~~~~~~~----~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill 502 (587)
T 3qf4_A 436 NLKWG---------REDATDDEIVEAA----KIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI 502 (587)
T ss_dssp HHTTT---------CSSCCHHHHHHHH----HHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHhcc---------CCCCCHHHHHHHH----HHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence 54321 1123444443333 222320 0001112234678888777 7777789999
Q ss_pred cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|||++++|+.+...+.+.+.++.+. ++++|+...+. .+|+++.+
T Consensus 503 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl 550 (587)
T 3qf4_A 503 LDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVL 550 (587)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEE
Confidence 99999999999888888877776443 77999998775 57777644
No 119
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.31 E-value=1.2e-15 Score=140.60 Aligned_cols=154 Identities=17% Similarity=0.103 Sum_probs=103.2
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
..|++ +.|.||||||||||+++|++...+. .|.++ ..+.+++|+....+..+ +..-+.
T Consensus 310 ~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~--------------~~i~~v~Q~~~~~~~~t----v~~~~~ 369 (538)
T 1yqt_A 310 KKGEV--IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--------------LTVAYKPQYIKADYEGT----VYELLS 369 (538)
T ss_dssp ETTCE--EEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC--------------CCEEEECSSCCCCCSSB----HHHHHH
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC--------------ceEEEEecCCcCCCCCc----HHHHHH
Confidence 46888 9999999999999999999987654 22210 11444444432211111 111111
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW 183 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~ 183 (287)
. ...-.+ .. .+.+..+++..++ .+...+.+.++|||+.|| ++...+.++++||||+++|......+
T Consensus 370 ~-~~~~~~--~~----~~~~~~~l~~~~l--~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i 440 (538)
T 1yqt_A 370 K-IDASKL--NS----NFYKTELLKPLGI--IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440 (538)
T ss_dssp H-HHHHHH--TC----HHHHHHTTTTTTC--GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred h-hhccCC--CH----HHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 0 000000 01 2344556666666 455567788999999998 55556789999999999999999999
Q ss_pred HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
.+.+.++.++ ++++|+...+..++|+++.+
T Consensus 441 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl 475 (538)
T 1yqt_A 441 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475 (538)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998643 78999999999999987754
No 120
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.31 E-value=2.7e-12 Score=122.20 Aligned_cols=150 Identities=24% Similarity=0.281 Sum_probs=93.0
Q ss_pred CCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP--------------- 62 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~--------------- 62 (287)
.+++++.|..++++.|...+. -|..|+ ++|+||||||||.++++++++...+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence 457788888888888887762 122222 9999999999999999999988654
Q ss_pred -------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhccCC-cEEE-EEeCCCCCCcHHH
Q psy2281 63 -------------------VIILNETDHLTRE--------------AQQALRRTMEKYITT-CRLI-LCANSMSQVIPAI 107 (287)
Q Consensus 63 -------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~~~-~~~i-~~~~~~~~l~~~l 107 (287)
+|+|||+|.+... ..+.|+..|+..... ..++ .++|.++.+++++
T Consensus 554 ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~Al 633 (806)
T 3cf2_A 554 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHH
T ss_pred hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhH
Confidence 9999999987421 134567777765443 3344 4556678899999
Q ss_pred hc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHHHHHH
Q psy2281 108 RS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRRAILM 161 (287)
Q Consensus 108 ~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~al~~ 161 (287)
++ |+ ..+.++.|+.++..++++..+++..+. ++..+..++ .+||.|+...+..
T Consensus 634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp HSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHH
T ss_pred cCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 87 77 468899899888888888776655442 112233333 4778888875443
No 121
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.30 E-value=4e-14 Score=131.60 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=105.0
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC-------CC-HHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH-------LT-REAQQALRRTMEKYITTCRLILCANS 99 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~-------l~-~~~~~~l~~~i~~~~~~~~~i~~~~~ 99 (287)
+.+|++ +.|.||||+|||||+++|++.+.++ .+ +.... +. ...+..+..... ++...+.....
T Consensus 100 ~~~Gei--~~LvGpNGaGKSTLLkiL~Gll~P~~G~i--~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~ 172 (608)
T 3j16_B 100 PRPGQV--LGLVGTNGIGKSTALKILAGKQKPNLGRF--DDPPEWQEIIKYFRGSELQNYFTKMLE---DDIKAIIKPQY 172 (608)
T ss_dssp CCTTSE--EEEECCTTSSHHHHHHHHHTSSCCCTTTT--CCSSCHHHHHHHTTTSTHHHHHHHHHH---TSCCCEEECCC
T ss_pred CCCCCE--EEEECCCCChHHHHHHHHhcCCCCCCceE--ecccchhhhhheecChhhhhhhhHHHH---Hhhhhhhchhh
Confidence 357888 9999999999999999999988654 11 10000 00 001111111111 12222222222
Q ss_pred CCCCcHHHhccc----ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281 100 MSQVIPAIRSRC----LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY 170 (287)
Q Consensus 100 ~~~l~~~l~sr~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de 170 (287)
.+++........ ..+.... +...+.+.++++..|+ +....+.+.++|+|+.|| |+...+.++++||
T Consensus 173 ~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE 247 (608)
T 3j16_B 173 VDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQL--ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247 (608)
T ss_dssp TTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTC--TGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred hhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCC--cchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 233221111000 0000000 0112456667777787 555667788899999888 6666688999999
Q ss_pred CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281 171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l 213 (287)
|++++|+.....+.+.+.++.+. ++++|+...+..++|+++.+
T Consensus 248 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999998888888888887654 77999999999998887644
No 122
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=2e-11 Score=108.69 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=107.9
Q ss_pred cccCCCCCCCccCcHHHHHHHHHHH-h---cC---CCCcEEE--eCCCCCcHHHHHHHHHHHhCC-------C-------
Q psy2281 6 DKYRPNNLQKLDFHCKQANHLRNLL-K---EG---DFPHLLF--YGPSGAGKKTRIMALLKELYG-------P------- 62 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~~~~~~l~~~~-~---~g---~~~~~~l--~Gp~G~GKTtl~~~l~~~~~~-------~------- 62 (287)
.+|.| +.++|.....+.+...+ . .| ..++++| +||+|+||||+++.+++.... .
T Consensus 17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 34555 56888887777776665 3 23 3334888 999999999999998765310 0
Q ss_pred -----------------------------------------------EEEEeCCCCCCH------HHHHHHHHHHHhcc-
Q psy2281 63 -----------------------------------------------VIILNETDHLTR------EAQQALRRTMEKYI- 88 (287)
Q Consensus 63 -----------------------------------------------~i~ide~d~l~~------~~~~~l~~~i~~~~- 88 (287)
+|+|||++.+.. +....+.+.+....
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 789999987632 44444555555443
Q ss_pred ----CCcEEEEEeCCCC---CCc---HHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcC---
Q psy2281 89 ----TTCRLILCANSMS---QVI---PAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGL--TIPPEFALRLAQQSD--- 152 (287)
Q Consensus 89 ----~~~~~i~~~~~~~---~l~---~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~--- 152 (287)
....++++++..+ .+. +.+.+++. .+.+++++.++..+.+...+...+. .++++..+.+.+.++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 2334555554433 233 45556653 3889999999999999887765332 458899999999999
Q ss_pred ---CcHHHHHHHHHHHh
Q psy2281 153 ---RNLRRAILMCEASK 166 (287)
Q Consensus 153 ---G~~r~al~~l~~~~ 166 (287)
|+.+.++..+....
T Consensus 254 ~~~G~p~~~~~l~~~a~ 270 (412)
T 1w5s_A 254 GGDGSARRAIVALKMAC 270 (412)
T ss_dssp TSCCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 99999888776544
No 123
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.28 E-value=1.1e-15 Score=129.98 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=90.9
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR 108 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~ 108 (287)
++|++ ++|.||||||||||+++|++...+. .|.+++ .+.+++|+..++. .+..+++. +
T Consensus 62 ~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l~~-~tv~enl~-~-- 121 (290)
T 2bbs_A 62 ERGQL--LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RISFCSQNSWIMP-GTIKENII-G-- 121 (290)
T ss_dssp CTTCE--EEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------CEEEECSSCCCCS-SBHHHHHH-T--
T ss_pred cCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------EEEEEeCCCccCc-ccHHHHhh-C--
Confidence 56777 9999999999999999999987654 666765 1555666554322 13333332 1
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----------HHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281 109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----------ALRLAQQSDRNLRR-----AILMCEASKVQQYPF 172 (287)
Q Consensus 109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~l~~~s~G~~r~-----al~~l~~~~~~dep~ 172 (287)
+ ...... ....++..++ .+.. .+...++|+|+.|| |+...++++++|||+
T Consensus 122 -------~-~~~~~~----~~~~~~~~~l--~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 122 -------V-SYDEYR----YRSVIKACQL--EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp -------T-CCCHHH----HHHHHHHTTC--HHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred -------c-ccchHH----HHHHHHHhCh--HHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 1 011111 1222233333 1111 12245789998888 666668899999999
Q ss_pred ccccCccCccHHHHH-HHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 173 QIDQQIVEPDWKIYI-RDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 173 ~~~d~~~~~~~~~~i-~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+++|+.....+.+.+ .++.+. ++++|+...+. .+|+++.+
T Consensus 188 s~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l 231 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 231 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEE
Confidence 999988776665542 233222 77999987765 47776543
No 124
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.28 E-value=5.8e-11 Score=107.97 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=97.6
Q ss_pred CCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------- 62 (287)
..++|+..+++.+...+..|.. ++|+||||+|||++++++++.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~--VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~ 99 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRY 99 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCE--EEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------
T ss_pred hhhHHHHHHHHHHHHHHhcCCe--eEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhH
Confidence 3578999999888888877765 9999999999999999998755210
Q ss_pred ------------EEEEeCCCCCCHHHHHHHHHHHHhc---------cCCcEE-EEEeCCCCC---CcHHHhcccc-eeec
Q psy2281 63 ------------VIILNETDHLTREAQQALRRTMEKY---------ITTCRL-ILCANSMSQ---VIPAIRSRCL-CIRI 116 (287)
Q Consensus 63 ------------~i~ide~d~l~~~~~~~l~~~i~~~---------~~~~~~-i~~~~~~~~---l~~~l~sr~~-~~~~ 116 (287)
++++||++.++...++.|+..|+.- ....++ +.++|..+. ..+++.+|+. .+.+
T Consensus 100 ~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 100 ERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEEC
T ss_pred HhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHH
Confidence 5999999999999999999999731 112234 555554322 4568999985 3677
Q ss_pred CCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHHHc
Q psy2281 117 PAPTH-EEIVSVLTNIC-----------------------KKEGLTIPPEFALRLAQQS 151 (287)
Q Consensus 117 ~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~l~~~s 151 (287)
+.|+. ++...++.... ...++.++++..++++++.
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~ 238 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLR 238 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHH
Confidence 77765 45555554322 1125667888888888765
No 125
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.27 E-value=1.7e-14 Score=144.97 Aligned_cols=170 Identities=14% Similarity=0.062 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.+.++..+++|+. +.|+||+||||||++++|++...+. .|.+|+.+.- .-....+++.+.+++|++.++ ..+..
T Consensus 406 L~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~-~~~~~~~r~~i~~v~Q~~~l~-~~ti~ 481 (1284)
T 3g5u_A 406 LKGLNLKVKSGQT--VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLREIIGVVSQEPVLF-ATTIA 481 (1284)
T ss_dssp EEEEEEEECTTCE--EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGG-GSCHHHHHHHEEEECSSCCCC-SSCHH
T ss_pred eecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHH-hCCHHHHHhheEEEcCCCccC-CccHH
Confidence 3344444578888 9999999999999999999998776 8899987632 222456778899999988544 33555
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHH
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEA 164 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~ 164 (287)
+|+..+ ....+.+++.+.++ ..++ .+... +...++|||+.|| |+...++
T Consensus 482 eNi~~g---------~~~~~~~~~~~~~~----~~~~--~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 482 ENIRYG---------REDVTMDEIEKAVK----EANA--YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp HHHHHH---------CSSCCHHHHHHHHH----HTTC--HHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhcC---------CCCCCHHHHHHHHH----HhCc--HHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 555433 12345555444433 2222 11111 1123578887777 7777889
Q ss_pred HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281 165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE 212 (287)
Q Consensus 165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~ 212 (287)
++++|||++++|..+...+.+.+..+.+. ++++|+...+.. +|+++.
T Consensus 547 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~v 596 (1284)
T 3g5u_A 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAG 596 (1284)
T ss_dssp EEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEE
Confidence 99999999999988776666666655433 778999888765 666553
No 126
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.24 E-value=2.6e-14 Score=132.93 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=95.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP 117 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~ 117 (287)
+.|.||||+|||||+++|++...+. .+.+ +. ...+.+.+++....+.. .+..-+..+. .-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~----~G~~-~~-------~~~i~~~~q~~~~~~~~----tv~e~~~~~~---~~~ 441 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPD----EGQD-IP-------KLNVSMKPQKIAPKFPG----TVRQLFFKKI---RGQ 441 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCS----BCCC-CC-------SCCEEEECSSCCCCCCS----BHHHHHHHHC---SST
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC----CCcC-cc-------CCcEEEecccccccCCc----cHHHHHHHHh---hcc
Confidence 8999999999999999999987653 1110 00 00122222221110000 0111111110 000
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH
Q psy2281 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK 192 (287)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~ 192 (287)
.... .....+++..++ .+...+.+.++|||+.|| |+...|.++++||||+++|......+.+.+.++.+
T Consensus 442 ~~~~----~~~~~~l~~l~l--~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~ 515 (608)
T 3j16_B 442 FLNP----QFQTDVVKPLRI--DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515 (608)
T ss_dssp TTSH----HHHHHTHHHHTS--TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccH----HHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 1111 233455666676 344456677899999988 55556889999999999999998889999998864
Q ss_pred H-----HHhccChhHHHHHHHHHHHH
Q psy2281 193 L-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 193 ~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
+ ++++|+.+.+..++|+++.+
T Consensus 516 ~~g~tviivtHdl~~~~~~aDrvivl 541 (608)
T 3j16_B 516 HNKKTAFIVEHDFIMATYLADKVIVF 541 (608)
T ss_dssp HHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3 78999999999999988744
No 127
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.3e-10 Score=98.02 Aligned_cols=126 Identities=22% Similarity=0.253 Sum_probs=82.8
Q ss_pred CCCCCCCccCcHHHHHHHHHHH----------hc-C-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281 9 RPNNLQKLDFHCKQANHLRNLL----------KE-G-DFPH-LLFYGPSGAGKKTRIMALLKELYGP------------- 62 (287)
Q Consensus 9 ~p~~~~~~~~~~~~~~~l~~~~----------~~-g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------- 62 (287)
...+|+++.|..++++.+...+ +. + ..|. ++|+|||||||||+++++++.....
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 4467899999888888887654 11 1 2233 9999999999999999999987532
Q ss_pred ---------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhcc-CCcE-EEEEeCCCCCCcHHHh
Q psy2281 63 ---------------------VIILNETDHLTRE-----------AQQALRRTMEKYI-TTCR-LILCANSMSQVIPAIR 108 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~-~~~~-~i~~~~~~~~l~~~l~ 108 (287)
++++||++.+... ..+.+...+.... +... ++.+++.++.+.++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 7889999875311 1223333444322 2233 3445666777888888
Q ss_pred c--ccc-eeecCCCCHHHHHHHHHHHHHH
Q psy2281 109 S--RCL-CIRIPAPTHEEIVSVLTNICKK 134 (287)
Q Consensus 109 s--r~~-~~~~~~~~~~~~~~~l~~~~~~ 134 (287)
+ |+. .+.++.|+.++..++++..++.
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 6 774 5889999999999999887653
No 128
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.22 E-value=3.8e-13 Score=135.61 Aligned_cols=162 Identities=17% Similarity=0.080 Sum_probs=110.6
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS 101 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~ 101 (287)
+.++..+++|+. +.++||+||||||++++|.++..+. .|.+|+.|. ..-....+++.+.+++|++. ++..|..+
T Consensus 435 ~~isl~i~~G~~--vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i-~~~~~~~lr~~i~~v~Q~~~-Lf~~TI~e 510 (1321)
T 4f4c_A 435 RGMNLRVNAGQT--VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDV-RDINLEFLRKNVAVVSQEPA-LFNCTIEE 510 (1321)
T ss_dssp EEEEEEECTTCE--EEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEET-TTSCHHHHHHHEEEECSSCC-CCSEEHHH
T ss_pred eceEEeecCCcE--EEEEecCCCcHHHHHHHhccccccccCcccCCCccc-hhccHHHHhhcccccCCcce-eeCCchhH
Confidence 344444578888 9999999999999999999998877 899998763 22235678889999999874 45556667
Q ss_pred CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-----------HHHHcCCcHHH-----HHHHHHHH
Q psy2281 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-----------LAQQSDRNLRR-----AILMCEAS 165 (287)
Q Consensus 102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------l~~~s~G~~r~-----al~~l~~~ 165 (287)
|+..+ -+..+++++.+.++ ..++ .+..... =..+|||+.|| |+...+.+
T Consensus 511 NI~~g---------~~~~~~~~v~~a~~----~a~l--~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 511 NISLG---------KEGITREEMVAACK----MANA--EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp HHHTT---------CTTCCHHHHHHHHH----HTTC--HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred HHhhh---------cccchHHHHHHHHH----Hccc--hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE
Confidence 76432 12345555554443 3332 1111110 02356666555 77777899
Q ss_pred hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHH
Q psy2281 166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLL 204 (287)
Q Consensus 166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~ 204 (287)
+++|||++++|..+...+.+.+.++.+. |+++|....+.
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR 617 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH
Confidence 9999999999998877777777776554 67888765443
No 129
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.22 E-value=3.5e-13 Score=124.09 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhc
Q psy2281 127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISE 197 (287)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~ 197 (287)
.+.++++..|+ +....+.+.++|+|+.|| |+...|+++++||||+++|+.....+.+.+.++.+. |+++
T Consensus 138 ~~~~~l~~lgl--~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vs 215 (538)
T 1yqt_A 138 KLEEVVKALEL--ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215 (538)
T ss_dssp CHHHHHHHTTC--TTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCC--ChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45667777787 444556788999999888 666778999999999999999888888889888764 7899
Q ss_pred cChhHHHHHHHHHHHH
Q psy2281 198 QSPKKLLEVRTRLYEL 213 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~l 213 (287)
|+...+..++|+++.+
T Consensus 216 Hd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 216 HDLAVLDYLSDIIHVV 231 (538)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999999988887643
No 130
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.21 E-value=3.2e-13 Score=125.70 Aligned_cols=85 Identities=18% Similarity=0.062 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhc
Q psy2281 127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISE 197 (287)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~ 197 (287)
.+.++++..|+ ++...+.+.++|+|+.|| |+...|+++++|||++++|......+.+.+.++.+. |+++
T Consensus 208 ~~~~~L~~lgL--~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivs 285 (607)
T 3bk7_A 208 KFEEVVKELEL--ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285 (607)
T ss_dssp CHHHHHHHTTC--TTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCC--CchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45567777777 455566788999999998 677778999999999999999988888999988764 7899
Q ss_pred cChhHHHHHHHHHHHH
Q psy2281 198 QSPKKLLEVRTRLYEL 213 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~l 213 (287)
|+...+..++|+++.+
T Consensus 286 Hdl~~~~~~adri~vl 301 (607)
T 3bk7_A 286 HDLAVLDYLSDVIHVV 301 (607)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred cChHHHHhhCCEEEEE
Confidence 9999988888877543
No 131
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.21 E-value=1.8e-14 Score=144.80 Aligned_cols=175 Identities=15% Similarity=0.090 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.+.++..+++|+. +.|+||+|+||||++++|++...+. .|.+|+.+.-. -....+++.+.+++|++.+ +..+..
T Consensus 1049 l~~vsl~i~~Ge~--v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l-~~~ti~ 1124 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQT--LALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ-LNVQWLRAQLGIVSQEPIL-FDCSIA 1124 (1284)
T ss_dssp BSSCCEEECSSSE--EEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS-SCHHHHTTSCEEEESSCCC-CSSBHH
T ss_pred ecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc-CCHHHHHhceEEECCCCcc-ccccHH
Confidence 4445555578888 9999999999999999999988776 89999987432 1234567778888888743 333334
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHH----HHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPE----FALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~----~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+|+..+.. ....+.+++.+.++. .++ .+++. .-+.-.++|||+.|| |+...++++
T Consensus 1125 eNi~~~~~-------~~~~~~~~i~~~~~~----~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iL 1193 (1284)
T 3g5u_A 1125 ENIAYGDN-------SRVVSYEEIVRAAKE----ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193 (1284)
T ss_dssp HHHTCCCS-------SCCCCHHHHHHHHHH----HTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSE
T ss_pred HHHhccCC-------CCCCCHHHHHHHHHH----hCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEE
Confidence 44432110 112355555544433 222 00100 011123578888887 777778999
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++||||+++|..+...+.+.+.+..+. ++++|+...+.. +|+++.+
T Consensus 1194 iLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl 1242 (1284)
T 3g5u_A 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVI 1242 (1284)
T ss_dssp EEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 999999999988877777777664332 779999988755 7877644
No 132
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.21 E-value=2.9e-13 Score=124.36 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhcc
Q psy2281 127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQ 198 (287)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~ 198 (287)
.+..+++..++ .....+.+.++|+|+.|| |+...|+++++|||++++|......+.+.+.++.+. |+++|
T Consensus 118 ~~~~~l~~l~l--~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsH 195 (538)
T 3ozx_A 118 KKDEVKELLNM--TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195 (538)
T ss_dssp CHHHHHHHTTC--GGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred HHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 34556666676 444556678899999888 666778999999999999998888888888877533 77999
Q ss_pred ChhHHHHHHHHHHH
Q psy2281 199 SPKKLLEVRTRLYE 212 (287)
Q Consensus 199 ~~~~~~~~~~~~~~ 212 (287)
+...+..++|++..
T Consensus 196 dl~~~~~~~d~i~v 209 (538)
T 3ozx_A 196 DLIVLDYLTDLIHI 209 (538)
T ss_dssp CHHHHHHHCSEEEE
T ss_pred ChHHHHhhCCEEEE
Confidence 99999998887653
No 133
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.20 E-value=3.2e-14 Score=117.63 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=96.4
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~ 102 (287)
.++..+++|++ ++|.||||||||||+++|++.+.+. .|.+++ .+.+++|++.+ +..+..++
T Consensus 23 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~~-~~~tv~en 85 (237)
T 2cbz_A 23 GITFSIPEGAL--VAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------------SVAYVPQQAWI-QNDSLREN 85 (237)
T ss_dssp EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--------------CEEEECSSCCC-CSEEHHHH
T ss_pred eeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------------EEEEEcCCCcC-CCcCHHHH
Confidence 34444578888 9999999999999999999987654 677776 15556665432 22233333
Q ss_pred CcHHHhcccceeecCCCCHHHHHHHHHH--HHHHhCCCCCH----HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTN--ICKKEGLTIPP----EFALRLAQQSDRNLRR-----AILMCEASKVQQYP 171 (287)
Q Consensus 103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~----~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep 171 (287)
+..+ .....+...+.++. ..+..+.. +. ...+.+.++|+|+.|| |+...|+++++|||
T Consensus 86 l~~~----------~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 86 ILFG----------CQLEEPYYRSVIQACALLPDLEIL-PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHTT----------SCCCTTHHHHHHHHTTCHHHHTTS-TTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred hhCc----------cccCHHHHHHHHHHHhhHHHHHhc-cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3211 01111111111111 11111110 00 0123356788888888 77777899999999
Q ss_pred cccccCccCccHHHHHH---HHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 172 FQIDQQIVEPDWKIYIR---DTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 172 ~~~~d~~~~~~~~~~i~---~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++++|+.....+.+.+. ++.+. ++++|+...+. .+|+++.+
T Consensus 155 ts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l 201 (237)
T 2cbz_A 155 LSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVM 201 (237)
T ss_dssp TTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEE
Confidence 99999888777766663 22222 67899988765 57776543
No 134
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.20 E-value=9.4e-11 Score=89.30 Aligned_cols=86 Identities=24% Similarity=0.254 Sum_probs=64.4
Q ss_pred CccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------CEEE
Q psy2281 15 KLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------PVII 65 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------~~i~ 65 (287)
+++|+......+...++. ....+++|+||+|||||+++++++..... .+++
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g~l~ 81 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLV 81 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTSCEE
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCcEEE
Confidence 467777666655555521 12233999999999999999999886411 1899
Q ss_pred EeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 66 LNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 66 ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+||++.++.+.|..|++.+.....+.+++.++|..
T Consensus 82 ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 82 LSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp EECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred EcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 99999999999999999997776677888887764
No 135
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.19 E-value=3.2e-13 Score=127.87 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=60.4
Q ss_pred HHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHHH--HhhcCCCcccccCccCccHHHHHHHHHHH----HHhcc
Q psy2281 131 ICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCEA--SKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQ 198 (287)
Q Consensus 131 ~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~~--~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~ 198 (287)
.++..|+. +. ..+.+.++|+|+.|| |+...|+ ++++|||++++|+.....+.+.+.++.+. |+++|
T Consensus 185 ~l~~~gL~--~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 185 FLQNVGLD--YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HHHHTTCT--TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHcCCc--hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35556662 22 245677899999988 4444556 99999999999999999999999998754 78999
Q ss_pred ChhHHHHHHHHHHHH
Q psy2281 199 SPKKLLEVRTRLYEL 213 (287)
Q Consensus 199 ~~~~~~~~~~~~~~l 213 (287)
+.+.+. .+|+++.+
T Consensus 263 d~~~~~-~~d~ii~l 276 (670)
T 3ux8_A 263 DEDTML-AADYLIDI 276 (670)
T ss_dssp CHHHHH-HCSEEEEE
T ss_pred CHHHHh-hCCEEEEe
Confidence 998654 47776644
No 136
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.19 E-value=1.3e-10 Score=96.59 Aligned_cols=114 Identities=15% Similarity=0.232 Sum_probs=79.3
Q ss_pred HHHHHHHhcC-C-CCcEEEeCCCCCcHHHHHHHHHHHhC--C----------------C-EEEEeCCCCCCHHHHHHHHH
Q psy2281 24 NHLRNLLKEG-D-FPHLLFYGPSGAGKKTRIMALLKELY--G----------------P-VIILNETDHLTREAQQALRR 82 (287)
Q Consensus 24 ~~l~~~~~~g-~-~~~~~l~Gp~G~GKTtl~~~l~~~~~--~----------------~-~i~ide~d~l~~~~~~~l~~ 82 (287)
..+..+++.. . ..+++|+||||||||++++++++... + . +++.||.. +..+.+..+++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~-~~~d~~~~lr~ 169 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGK-MTAKVVESAKA 169 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCC-EETTTHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEecccc-chhHHHHHHHH
Confidence 3455555432 1 22499999999999999999998631 0 0 55555554 55566677777
Q ss_pred HHH--------hcc-----CCcEEEEEeCCC-----------CCCcHHHhcccceeecC--------CCCHHHHHHHHHH
Q psy2281 83 TME--------KYI-----TTCRLILCANSM-----------SQVIPAIRSRCLCIRIP--------APTHEEIVSVLTN 130 (287)
Q Consensus 83 ~i~--------~~~-----~~~~~i~~~~~~-----------~~l~~~l~sr~~~~~~~--------~~~~~~~~~~l~~ 130 (287)
.++ ... +.+++++++|.. +...++|+|||.+++|. +++.++....+..
T Consensus 170 i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 170 ILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRW 249 (267)
T ss_dssp HHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHH
T ss_pred HhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHH
Confidence 777 322 556788888872 24668999999999998 7889999999885
Q ss_pred HHHHhCCCC
Q psy2281 131 ICKKEGLTI 139 (287)
Q Consensus 131 ~~~~~~~~~ 139 (287)
. +.++.++
T Consensus 250 ~-~~~~~~~ 257 (267)
T 1u0j_A 250 A-KDHVVEV 257 (267)
T ss_dssp H-HHTCCCC
T ss_pred H-HHcCCCC
Confidence 5 6665544
No 137
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=4.9e-11 Score=111.09 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=87.2
Q ss_pred CCccCcHHHHHHHHHHHhcCCC-----------CcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281 14 QKLDFHCKQANHLRNLLKEGDF-----------PHLLFYGPSGAGKKTRIMALLKELYGP-------------------- 62 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~g~~-----------~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------- 62 (287)
..++|++.++..+...+..|.. .|++|+||||+|||++++++++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 4578888888887766665531 159999999999999999998765310
Q ss_pred -------------------EEEEeCCCCCCHHHHHHHHHHHHhc-------------cCCcEEEEEeCCCC---------
Q psy2281 63 -------------------VIILNETDHLTREAQQALRRTMEKY-------------ITTCRLILCANSMS--------- 101 (287)
Q Consensus 63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~-------------~~~~~~i~~~~~~~--------- 101 (287)
+++|||++.++.+.+..|+..|+.- +.++.++.++|...
T Consensus 375 ~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~ 454 (595)
T 3f9v_A 375 KGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPV 454 (595)
T ss_dssp GGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCS
T ss_pred cccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCc
Confidence 8999999999999999999999852 12344666666543
Q ss_pred ----CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHH
Q psy2281 102 ----QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKK 134 (287)
Q Consensus 102 ----~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~ 134 (287)
.+.+++.+|| .++.+..++..+...++..++..
T Consensus 455 ~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~ 492 (595)
T 3f9v_A 455 SDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDV 492 (595)
T ss_dssp CTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTT
T ss_pred hhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 7888999999 44445555444455555555543
No 138
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.18 E-value=9.4e-11 Score=112.90 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=101.7
Q ss_pred ccCCCCCCCccCcHHHHHHHHHHHhc-----------C-CCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281 7 KYRPNNLQKLDFHCKQANHLRNLLKE-----------G-DFP-HLLFYGPSGAGKKTRIMALLKELYGP----------- 62 (287)
Q Consensus 7 k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g-~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~----------- 62 (287)
.+.+..|++++|....++.+...+.. + ..+ +++|+|||||||||+++++++.+...
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 35567889999988777777766632 1 122 29999999999999999999886533
Q ss_pred -----------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhccCC--cEEEEEeCCCCCCcHH
Q psy2281 63 -----------------------VIILNETDHLTR-----------EAQQALRRTMEKYITT--CRLILCANSMSQVIPA 106 (287)
Q Consensus 63 -----------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~ 106 (287)
++++||++.+.. ..+..++..++...+. ..++.+++..+.+.+.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHH
Confidence 899999976532 2345566667655443 4556666677788888
Q ss_pred Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281 107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN 154 (287)
Q Consensus 107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~ 154 (287)
+++ |+ ..+.+..|+.++..+++...+....+. .+.....++..+.|.
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSC
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCc
Confidence 877 67 357888899999999888776655442 222244455555553
No 139
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.13 E-value=2.1e-13 Score=137.49 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=116.1
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.+.++..+++|+. +.|+||+||||||++++|.+...+. .|.||+.|. ..-..+.+|+.+..++|++.+ +..|..
T Consensus 1095 L~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di-~~i~~~~lR~~i~~V~Qdp~L-F~gTIr 1170 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQT--LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI-KTLNPEHTRSQIAIVSQEPTL-FDCSIA 1170 (1321)
T ss_dssp EEEEEEEECTTCE--EEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET-TTBCHHHHHTTEEEECSSCCC-CSEEHH
T ss_pred ccceeEEECCCCE--EEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh-hhCCHHHHHhheEEECCCCEe-eCccHH
Confidence 3444455578888 9999999999999999999988765 899999874 222356788899999998754 445566
Q ss_pred CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC-----C----CHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281 101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT-----I----PPEFALRLAQQSDRNLRR-----AILMCEASK 166 (287)
Q Consensus 101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~ 166 (287)
+|+..++- -...+++++.+.++. .++. + +...-+.=.++|+|+.|| |+...++++
T Consensus 1171 eNI~~gld-------~~~~sd~ei~~Al~~----a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1171 ENIIYGLD-------PSSVTMAQVEEAARL----ANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp HHHSSSSC-------TTTSCHHHHHHHHHH----TTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHHhccCC-------CCCCCHHHHHHHHHH----hCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 66533211 023456666555443 3330 0 000000012367776666 677778899
Q ss_pred hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
++||||+++|..+...+.+.++++.+. |+++|....+.. +|+++.+
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vl 1288 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVV 1288 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEE
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEE
Confidence 999999999988877666666655433 678898877665 4666543
No 140
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.12 E-value=2e-10 Score=91.38 Aligned_cols=94 Identities=22% Similarity=0.372 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCCC---cEEEeCCCCCcHHHHHHHHHHHhCCC--------------------EEEEeCCCCCCHHH-HH
Q psy2281 23 ANHLRNLLKEGDFP---HLLFYGPSGAGKKTRIMALLKELYGP--------------------VIILNETDHLTREA-QQ 78 (287)
Q Consensus 23 ~~~l~~~~~~g~~~---~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------~i~ide~d~l~~~~-~~ 78 (287)
...++.+++. .| +++|+||||+||||++.++++.+.+. ++++||++.-..+. ..
T Consensus 45 ~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~~~~~~~d~ 122 (212)
T 1tue_A 45 LGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDT 122 (212)
T ss_dssp HHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCchhHHHHHH
Confidence 5566666653 44 49999999999999999999987533 88999988321111 22
Q ss_pred HHHHHHHhcc-------------CCcEEEEEeCCC---CCCcHHHhcccceeecCC
Q psy2281 79 ALRRTMEKYI-------------TTCRLILCANSM---SQVIPAIRSRCLCIRIPA 118 (287)
Q Consensus 79 ~l~~~i~~~~-------------~~~~~i~~~~~~---~~l~~~l~sr~~~~~~~~ 118 (287)
.++..++..+ ..+++++++|.. +.....+.||+..+.|+.
T Consensus 123 ~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~ 178 (212)
T 1tue_A 123 YMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPN 178 (212)
T ss_dssp HCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCS
T ss_pred HHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCC
Confidence 3444454421 124788888873 446678999998887764
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.12 E-value=9.9e-11 Score=88.96 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=66.5
Q ss_pred CccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhC-----------------------CCEEEEeCC
Q psy2281 15 KLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELY-----------------------GPVIILNET 69 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----------------------~~~i~ide~ 69 (287)
+++|+......+...+.. ....+++|+||+|||||+++++++.... +.++++||+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei 84 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDI 84 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEEC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeCh
Confidence 467776666655555432 2223499999999999999999875432 128999999
Q ss_pred CCCCHHHHHHHHHHHHhc-cCCcEEEEEeCCC-CC----CcHHHhcccc
Q psy2281 70 DHLTREAQQALRRTMEKY-ITTCRLILCANSM-SQ----VIPAIRSRCL 112 (287)
Q Consensus 70 d~l~~~~~~~l~~~i~~~-~~~~~~i~~~~~~-~~----l~~~l~sr~~ 112 (287)
+.++.+.|..+.+.++.. ..+.+++.++|.. +. +.+.+..|+.
T Consensus 85 ~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~ 133 (143)
T 3co5_A 85 AQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFS 133 (143)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSS
T ss_pred HHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhc
Confidence 999999999999888865 3456778777654 22 3344555543
No 142
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.11 E-value=1.1e-09 Score=97.67 Aligned_cols=88 Identities=18% Similarity=0.355 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCH------------HHHHHHHHHHHhc----------cCCcEEEEEe----CCCCCCcHHHhcccce-ee
Q psy2281 63 VIILNETDHLTR------------EAQQALRRTMEKY----------ITTCRLILCA----NSMSQVIPAIRSRCLC-IR 115 (287)
Q Consensus 63 ~i~ide~d~l~~------------~~~~~l~~~i~~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~~-~~ 115 (287)
++++||+|.+.. ..|++|++.++-. ..+..||.++ +.+..+.+++++|+.+ +.
T Consensus 253 il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 253 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 466777776542 1466788888741 1222344443 1344577999999976 89
Q ss_pred cCCCCHHHHHHHHHH-----------HHHHhC--CCCCHHHHHHHHHH
Q psy2281 116 IPAPTHEEIVSVLTN-----------ICKKEG--LTIPPEFALRLAQQ 150 (287)
Q Consensus 116 ~~~~~~~~~~~~l~~-----------~~~~~~--~~~~~~~~~~l~~~ 150 (287)
|++++.++..+++.. .+...| +.+++++++.+++.
T Consensus 333 l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~ 380 (444)
T 1g41_A 333 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEA 380 (444)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHH
Confidence 999999999988831 222223 35689999888864
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=2.3e-10 Score=87.47 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=66.4
Q ss_pred CCCCccC--cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------------------CCEEEEe
Q psy2281 12 NLQKLDF--HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------------------GPVIILN 67 (287)
Q Consensus 12 ~~~~~~~--~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------------------~~~i~id 67 (287)
++++++. +......+..+ .|+. ++|+||+|+|||||++++++... ++++++|
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~--~g~~--~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilD 90 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK--HGQF--IYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVD 90 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC--CCSE--EEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEE
T ss_pred chhhcCcCccHHHHHHHHhc--CCCE--EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEe
Confidence 3444432 44455555544 5555 99999999999999999998762 1288999
Q ss_pred CCCCCCHHHHHHHHHHHHhccCC-cE-EEEEeCCCCC-C--cHHHhcccc
Q psy2281 68 ETDHLTREAQQALRRTMEKYITT-CR-LILCANSMSQ-V--IPAIRSRCL 112 (287)
Q Consensus 68 e~d~l~~~~~~~l~~~i~~~~~~-~~-~i~~~~~~~~-l--~~~l~sr~~ 112 (287)
|++.+....+..+...+...... .. ++++++.... + .+.++||+.
T Consensus 91 E~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 91 QVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp STTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred CccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 99988766677777777765333 33 6777765432 1 288999984
No 144
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.04 E-value=2.5e-12 Score=123.81 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=99.0
Q ss_pred CCCCCCCccCcHHHHHHHHHHHhc-----------CC--CCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281 9 RPNNLQKLDFHCKQANHLRNLLKE-----------GD--FPHLLFYGPSGAGKKTRIMALLKELYGP------------- 62 (287)
Q Consensus 9 ~p~~~~~~~~~~~~~~~l~~~~~~-----------g~--~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------- 62 (287)
....++++.|...+++.+...+.. +- ..+++|+|||||||||+++++++.+...
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 345688889988888888877631 11 1239999999999999999999987533
Q ss_pred ---------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhcc--CCcEEEEEeCCCCCCcH
Q psy2281 63 ---------------------VIILNETDHLTR--------------EAQQALRRTMEKYI--TTCRLILCANSMSQVIP 105 (287)
Q Consensus 63 ---------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~--~~~~~i~~~~~~~~l~~ 105 (287)
++++||+|.+.. ...+.|+..|+... .+..++.++|.++.+.+
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~ 631 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 631 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSC
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCH
Confidence 899999887521 11233343343322 23345556666778899
Q ss_pred HHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHHHHHHHHHHh
Q psy2281 106 AIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRRAILMCEASK 166 (287)
Q Consensus 106 ~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~al~~l~~~~ 166 (287)
++++ ||. .+.|+.|+.++...+++..++...+. .+..+..++ .+|+++++.++.......
T Consensus 632 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a 698 (806)
T 1ypw_A 632 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp TTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHH
T ss_pred HHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHH
Confidence 9988 885 78888999988888888766543321 000112222 245556666555444433
No 145
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.9e-12 Score=116.74 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=95.4
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe---
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-PVIILNETDHLTREAQQALRRTMEKYITTCRLILCA--- 97 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~--- 97 (287)
.++..++.|+. ++|.||||||||||+++|++... + ..|++|+ + .++.+.+++++..++...
T Consensus 130 ~vsl~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~---------~~~~i~~vpq~~~l~~~~~~~ 197 (460)
T 2npi_A 130 KIRMSNFEGPR--VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D---------PQQPIFTVPGCISATPISDIL 197 (460)
T ss_dssp HHHHHSSSCCC--EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C---------TTSCSSSCSSCCEEEECCSCC
T ss_pred cCceEeCCCCE--EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C---------ccCCeeeeccchhhccccccc
Confidence 45666678988 99999999999999999999864 3 3377886 2 123466777776544332
Q ss_pred CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----H--HHHHHHH----h
Q psy2281 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----A--ILMCEAS----K 166 (287)
Q Consensus 98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----a--l~~l~~~----~ 166 (287)
+..+++ .+... ...... ...+..+++..|+ ++.. . ..++|+|+.|| + +...+++ +
T Consensus 198 tv~eni-~~~~~------~~~~~~---~~~~~~ll~~~gl--~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 198 DAQLPT-WGQSL------TSGATL---LHNKQPMVKNFGL--ERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp CTTCTT-CSCBC------BSSCCS---SCCBCCEECCCCS--SSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred chhhhh-ccccc------ccCcch---HHHHHHHHHHhCC--Cccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 333344 21110 000000 0111222333344 2221 2 67889998888 5 6677889 9
Q ss_pred hcCC-CcccccCccCccHHHHHHHHHHH-----HHhccChh------HHHHHHHH
Q psy2281 167 VQQY-PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPK------KLLEVRTR 209 (287)
Q Consensus 167 ~~de-p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~------~~~~~~~~ 209 (287)
++|| |++++|.. .. .+.++.+. ++++|+.. .+..++++
T Consensus 264 lLDEpPts~LD~~-~~----~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 264 IVDTPSISQLDEN-LA----ELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp EEECCCGGGSCSS-CH----HHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred EEeCCcccccChh-HH----HHHHHHHHhCCCEEEEEccCchhhhHHHHHHhccc
Confidence 9999 99999987 33 34444433 66788877 66678887
No 146
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.02 E-value=3.2e-14 Score=115.33 Aligned_cols=56 Identities=7% Similarity=-0.068 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcCCCccccc----CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281 158 AILMCEASKVQQYPFQIDQ----QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 158 al~~l~~~~~~dep~~~~d----~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l 213 (287)
++...+.+.++|||+++++ ......+.+.+.++.+. ++++|+.+.+..++++++.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 4444566677788888764 33445556666666532 77999999999999998754
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.00 E-value=3.2e-11 Score=116.68 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=97.4
Q ss_pred HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC--C
Q psy2281 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ--V 103 (287)
Q Consensus 26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~--l 103 (287)
++..+.+|+. +.|.||||+|||||+++|++ +.+ ++.+. ... . + +.+.+++.. ..... +
T Consensus 454 vsl~I~~Ge~--v~LiGpNGsGKSTLLk~Lag---G~i---~g~~~-~~~----~-~-~~~v~q~~~-----~~~~~ltv 513 (986)
T 2iw3_A 454 TQLRLKRARR--YGICGPNGCGKSTLMRAIAN---GQV---DGFPT-QEE----C-R-TVYVEHDID-----GTHSDTSV 513 (986)
T ss_dssp EEEEEETTCE--EEEECSTTSSHHHHHHHHHH---TCS---TTCCC-TTT----S-C-EEETTCCCC-----CCCTTSBH
T ss_pred ceEEEcCCCE--EEEECCCCCCHHHHHHHHhC---CCc---CCCcc-ccc----e-e-EEEEccccc-----ccccCCcH
Confidence 3334467888 99999999999999999996 211 22211 000 0 0 011111100 00000 1
Q ss_pred cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281 104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ 177 (287)
Q Consensus 104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~ 177 (287)
..-+.. .+... .+.+...++..|+ + +...+.+.++|+|+.|| |+...+.++++|||++++|.
T Consensus 514 ~e~l~~-----~~~~~-----~~~v~~~L~~lgL--~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 514 LDFVFE-----SGVGT-----KEAIKDKLIEFGF--TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp HHHHHT-----TCSSC-----HHHHHHHHHHTTC--CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred HHHHHH-----hhcCH-----HHHHHHHHHHcCC--ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 111110 01111 3456667777787 4 34456678999999888 67777899999999999999
Q ss_pred ccCccHHHHHHHHHHH--HHhccChhHHHHHHHHHHHH
Q psy2281 178 IVEPDWKIYIRDTAKL--IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 178 ~~~~~~~~~i~~l~~~--i~~~~~~~~~~~~~~~~~~l 213 (287)
.....+.+.+.+ ... |+++|+...+..++++++.+
T Consensus 582 ~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L 618 (986)
T 2iw3_A 582 VNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINY 618 (986)
T ss_dssp HHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEE
Confidence 888877777766 211 77999999999998887644
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.98 E-value=1.1e-12 Score=126.74 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCCCCHH--HHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhc
Q psy2281 126 SVLTNICKKEGLTIPPE--FALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISE 197 (287)
Q Consensus 126 ~~l~~~~~~~~~~~~~~--~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~ 197 (287)
+.+.+.++..|+ +.. ..+.+.++|||+.|| ++...|.++++|||++++|......+.+.+.++... |+++
T Consensus 878 ~~i~~~Le~lGL--~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiIS 955 (986)
T 2iw3_A 878 KEIEEHCSMLGL--DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT 955 (986)
T ss_dssp HHHHHHHHHTTC--CHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEEC
T ss_pred HHHHHHHHHcCC--CchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 345667777787 543 345678999999998 566668899999999999977655554444433111 7799
Q ss_pred cChhHHHHHHHHHHHH
Q psy2281 198 QSPKKLLEVRTRLYEL 213 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~l 213 (287)
|+.+.+..++++++.+
T Consensus 956 HD~e~v~~l~DrVivL 971 (986)
T 2iw3_A 956 HSAEFTKNLTEEVWAV 971 (986)
T ss_dssp SCHHHHTTTCCEEECC
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9999888888877654
No 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.95 E-value=4.5e-08 Score=84.85 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=103.7
Q ss_pred CCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh------------------------------
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL------------------------------ 59 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~------------------------------ 59 (287)
|..-+.++|.....+.+...+..|.. ++++||+|+||||+++.+++..
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~~~--v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENYPL--TLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTI 85 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHCSE--EEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHS
T ss_pred CCChHhcCChHHHHHHHHHHHhcCCe--EEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHH
Confidence 33456789999999999988877744 9999999999999998765320
Q ss_pred ------------------------------------------CCCEEEEeCCCCCCH-------HHHHHHHHHHHhccCC
Q psy2281 60 ------------------------------------------YGPVIILNETDHLTR-------EAQQALRRTMEKYITT 90 (287)
Q Consensus 60 ------------------------------------------~~~~i~ide~d~l~~-------~~~~~l~~~i~~~~~~ 90 (287)
.+.+|++||++.+.. .....+...++.. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~ 164 (350)
T 2qen_A 86 SPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PN 164 (350)
T ss_dssp CSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TT
T ss_pred HHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CC
Confidence 011789999998653 3334444444433 35
Q ss_pred cEEEEEeCCCC---------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281 91 CRLILCANSMS---------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157 (287)
Q Consensus 91 ~~~i~~~~~~~---------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~ 157 (287)
..++++++... ....++..|. ..+.+.+++.++..+.+...+...|..++++....+...++|...-
T Consensus 165 ~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 165 LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 66777765421 1112233344 3788999999999999988887778777889999999999998764
No 150
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.95 E-value=1.9e-09 Score=97.67 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=63.7
Q ss_pred CccccccCCCCCCCcc-CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-C--------------
Q psy2281 2 SLWVDKYRPNNLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-P-------------- 62 (287)
Q Consensus 2 ~~w~~k~~p~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~-------------- 62 (287)
++|.+||||.+|+++. .|..++..+...+..+.. +++|.||+||||||++.+++..+. . .
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKIL 90 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHH
Confidence 4899999999999987 577777777777766552 499999999999999988876541 1 0
Q ss_pred ----------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 63 ----------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 63 ----------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
++++||+..++...+..+.+.+. ....+++.....
T Consensus 91 ~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~ 165 (459)
T 3upu_A 91 SKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNK 165 (459)
T ss_dssp HHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTT
T ss_pred HhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHH
Confidence 78999999888776666665543 456677766443
No 151
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.90 E-value=7e-08 Score=84.71 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=108.0
Q ss_pred CccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------------------
Q psy2281 15 KLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------- 62 (287)
Q Consensus 15 ~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------- 62 (287)
.++|.......+...+ ..... ++++|++|+||+++++++.......
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~--vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~ 207 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAP--VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAF 207 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSC--EEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSS
T ss_pred cccccchHHHHHHhhhhhhhccchh--heEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccccc
Confidence 4566554443333333 33333 9999999999999999987654210
Q ss_pred -----------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCcHHH
Q psy2281 63 -----------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVIPAI 107 (287)
Q Consensus 63 -----------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~~~l 107 (287)
++++||++.++...|..|++.++.- .-+.++|.+++.. ..+.+.+
T Consensus 208 tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL 287 (368)
T 3dzd_A 208 TGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDL 287 (368)
T ss_dssp SSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence 7999999999999999999999852 1245677776643 1345567
Q ss_pred hcccce--eecCCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281 108 RSRCLC--IRIPAPTH--EEIVSVLTNICKK----EG---LTIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 108 ~sr~~~--~~~~~~~~--~~~~~~l~~~~~~----~~---~~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d 169 (287)
..|+.. +.++++.+ +++...+...+++ .+ ..+++++.+.+..++ .|++|...+.++.++...
T Consensus 288 ~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 288 YYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 777764 55666655 5666655555443 33 347999999999988 999999999999887764
No 152
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.88 E-value=2.1e-10 Score=101.75 Aligned_cols=163 Identities=15% Similarity=0.035 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCC--------------------CCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHH
Q psy2281 20 CKQANHLRNLLKEGD--------------------FPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQ 77 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~--------------------~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~ 77 (287)
..+++.++..+++|+ . +.|.||||+|||||+++|++...+. .+.+++.+. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~--valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~-t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLN--VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV-T---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEE--EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeE--EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec-c----
Confidence 467788888888888 6 9999999999999999999976543 333443221 0
Q ss_pred HHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC--cH
Q psy2281 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR--NL 155 (287)
Q Consensus 78 ~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G--~~ 155 (287)
+ . .+++.....+++ .++....+... ...+.+.++..++. +. ...+. +|+| +.
T Consensus 109 ----~-------~-~~v~q~~~~~~l--------tv~D~~g~~~~--~~~~~~~L~~~~L~--~~-~~~~~-lS~G~~~k 162 (413)
T 1tq4_A 109 ----M-------E-RHPYKHPNIPNV--------VFWDLPGIGST--NFPPDTYLEKMKFY--EY-DFFII-ISATRFKK 162 (413)
T ss_dssp ----C-------C-CEEEECSSCTTE--------EEEECCCGGGS--SCCHHHHHHHTTGG--GC-SEEEE-EESSCCCH
T ss_pred ----e-------e-EEeccccccCCe--------eehHhhcccch--HHHHHHHHHHcCCC--cc-CCeEE-eCCCCccH
Confidence 0 1 112211111110 01111111000 11234455555542 11 11222 7888 76
Q ss_pred HH-----HHHH----------HHHHhhcCCCcccccCccCccHHHHHHHHHH----H---------HHhccChhH--HHH
Q psy2281 156 RR-----AILM----------CEASKVQQYPFQIDQQIVEPDWKIYIRDTAK----L---------IISEQSPKK--LLE 205 (287)
Q Consensus 156 r~-----al~~----------l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~----~---------i~~~~~~~~--~~~ 205 (287)
++ ++.. .+.++++|||++++|+.....+.+.+.++.. . ++++|.... +++
T Consensus 163 qrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~ 242 (413)
T 1tq4_A 163 NDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV 242 (413)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH
Confidence 66 4555 5678899999999999988888888888752 1 236776666 999
Q ss_pred HHHHHHHHHh
Q psy2281 206 VRTRLYELLV 215 (287)
Q Consensus 206 ~~~~~~~l~~ 215 (287)
+++.+...+.
T Consensus 243 L~d~I~~~Lp 252 (413)
T 1tq4_A 243 LMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhCc
Confidence 9998876653
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.85 E-value=6.3e-09 Score=83.43 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=41.7
Q ss_pred cccccCCCCCCCccCcH----HHHHHHHHHHhcCC---C-CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 4 WVDKYRPNNLQKLDFHC----KQANHLRNLLKEGD---F-PHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 4 w~~k~~p~~~~~~~~~~----~~~~~l~~~~~~g~---~-~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+..+|++.+|+++++.. .+...+..++.... . .+++|+||+|+||||+++++++..
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999998743 34556666665431 1 349999999999999999998876
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.80 E-value=3.9e-10 Score=88.28 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCcccccCccC----------------ccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281 158 AILMCEASKVQQYPFQIDQQIVE----------------PDWKIYIRDTAKL----IISEQSPKKLLE 205 (287)
Q Consensus 158 al~~l~~~~~~dep~~~~d~~~~----------------~~~~~~i~~l~~~----i~~~~~~~~~~~ 205 (287)
++...+.++++|||++++|+... ..+.+.+.++.++ ++++|+.+.+..
T Consensus 97 al~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 97 DYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 55556778889999999997632 4444555555544 678888877654
No 155
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.77 E-value=1.4e-10 Score=109.75 Aligned_cols=83 Identities=10% Similarity=-0.015 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH--H---HHhhcCCCcccccCccCccHHHHHHHHHHH----HHh
Q psy2281 129 TNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC--E---ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IIS 196 (287)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l--~---~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~ 196 (287)
...+...++.. ....+.+.++|+|+.|| |.... + +++++|||++++|+.....+.+.+.++.+. |++
T Consensus 524 ~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~v 602 (670)
T 3ux8_A 524 LETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 602 (670)
T ss_dssp HHHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34455566631 12245677899999998 22222 3 489999999999999999999999998764 789
Q ss_pred ccChhHHHHHHHHHHHH
Q psy2281 197 EQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~~l 213 (287)
+|+...+. .+|+++.+
T Consensus 603 tHd~~~~~-~~d~i~~l 618 (670)
T 3ux8_A 603 EHNLDVIK-TADYIIDL 618 (670)
T ss_dssp CCCHHHHT-TCSEEEEE
T ss_pred eCCHHHHH-hCCEEEEe
Confidence 99998764 57887654
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.73 E-value=1.3e-08 Score=87.11 Aligned_cols=55 Identities=24% Similarity=0.406 Sum_probs=39.8
Q ss_pred cccCCCCCCCccCcH----HHHHHHHHHHhcC---CCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 6 DKYRPNNLQKLDFHC----KQANHLRNLLKEG---DFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 6 ~k~~p~~~~~~~~~~----~~~~~l~~~~~~g---~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
..+++.+|+++.+.. .+...+..++... ...+++|+||+|+|||+++++++..+.
T Consensus 116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456778999998632 3455566666542 123499999999999999999987654
No 157
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.69 E-value=5.8e-07 Score=79.42 Aligned_cols=155 Identities=20% Similarity=0.191 Sum_probs=105.1
Q ss_pred CCCccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------
Q psy2281 13 LQKLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------------------------- 61 (287)
Q Consensus 13 ~~~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------------------------- 61 (287)
+..++++......+...+ .... +++++|++|+||+++++++......
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~--~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~ 213 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAEC--PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 213 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCS--CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCT
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCC--CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCC
Confidence 345666654444443333 2222 2899999999999999998765320
Q ss_pred -------------------CEEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCc
Q psy2281 62 -------------------PVIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVI 104 (287)
Q Consensus 62 -------------------~~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~ 104 (287)
.++++||++.++...|..|++.++.- ..+.+++.++|.. ..+.
T Consensus 214 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr 293 (387)
T 1ny5_A 214 GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFR 293 (387)
T ss_dssp TSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred CCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCcc
Confidence 08999999999999999999998852 1245677776653 2244
Q ss_pred HHHhcccce--eecCCCC--HHHHHHHHHHHHH----HhCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281 105 PAIRSRCLC--IRIPAPT--HEEIVSVLTNICK----KEGL---TIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ 169 (287)
Q Consensus 105 ~~l~sr~~~--~~~~~~~--~~~~~~~l~~~~~----~~~~---~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d 169 (287)
+.+-.|+.. +.++++. .+++...+...++ +.+. .+++++.+.+..++ .|++|..-+.++..++..
T Consensus 294 ~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 294 EDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 555556543 4555553 3566655555443 3343 36899999998876 899999999998877654
No 158
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.68 E-value=3.5e-08 Score=85.27 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD 70 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d 70 (287)
+.+.++..++.|+. +++.||+|+||||+++++++.+.+. .|.+++.+
T Consensus 160 ~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 56778888899999 9999999999999999999988765 78888764
No 159
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.64 E-value=6.1e-07 Score=77.79 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=94.7
Q ss_pred CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----------------------------
Q psy2281 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------------------------- 61 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------------------------- 61 (287)
...+.++|.....+.+.. +.. +.++|+||+|+||||+++.+++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 345678899888888888 765 44999999999999999888654211
Q ss_pred ----------------------------------------------------C-EEEEeCCCCCCH----HHHHHHHHHH
Q psy2281 62 ----------------------------------------------------P-VIILNETDHLTR----EAQQALRRTM 84 (287)
Q Consensus 62 ----------------------------------------------------~-~i~ide~d~l~~----~~~~~l~~~i 84 (287)
+ +++|||++.+.. +....+.+..
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 1 577888776532 1223333333
Q ss_pred HhccCCcEEEEEeCCCC---------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281 85 EKYITTCRLILCANSMS---------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN 154 (287)
Q Consensus 85 ~~~~~~~~~i~~~~~~~---------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~ 154 (287)
+.. .+..++++++... ....++..|. ..+.+.+++.++..+.+...+...+...++. ..+...++|.
T Consensus 166 ~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G~ 242 (357)
T 2fna_A 166 DNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKIGGI 242 (357)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHHCSC
T ss_pred HcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHhCCC
Confidence 332 2456677665432 1112234454 5788999999999999988877677765543 7888999998
Q ss_pred HHHH
Q psy2281 155 LRRA 158 (287)
Q Consensus 155 ~r~a 158 (287)
..-.
T Consensus 243 P~~l 246 (357)
T 2fna_A 243 PGWL 246 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 160
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.60 E-value=3.8e-07 Score=96.66 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------------
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------------------------------- 62 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------------- 62 (287)
..+...+..|.. ++|+||||||||++++.++......
T Consensus 1258 ~ll~~~l~~~~~--vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1258 KIFYDLLNSKRG--IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp HHHHHHHHHTCE--EEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred HHHHHHHHCCCe--EEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCC
Confidence 345556667755 9999999999999995544322100
Q ss_pred ---EEEEeCCCCCCH------HHHHHHHHHHHhc----c--------CCcEEEEEeCCCC-----CCcHHHhcccceeec
Q psy2281 63 ---VIILNETDHLTR------EAQQALRRTMEKY----I--------TTCRLILCANSMS-----QVIPAIRSRCLCIRI 116 (287)
Q Consensus 63 ---~i~ide~d~l~~------~~~~~l~~~i~~~----~--------~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~ 116 (287)
++++||++.... ...+.+++.++.- . .+..++.++|.+. .+.+++.+||.++.+
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Confidence 888999775322 3456677777741 0 1245666666553 599999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy2281 117 PAPTHEEIVSVLTNICKK 134 (287)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~ 134 (287)
+.|+.+++..++..++..
T Consensus 1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887754
No 161
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.59 E-value=1.7e-06 Score=77.19 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=74.2
Q ss_pred ccCcHHHHHHHHHHHhcCC-----CCcEEEeCCCCCcHHHHHHHH-HHHh----------------C-------------
Q psy2281 16 LDFHCKQANHLRNLLKEGD-----FPHLLFYGPSGAGKKTRIMAL-LKEL----------------Y------------- 60 (287)
Q Consensus 16 ~~~~~~~~~~l~~~~~~g~-----~~~~~l~Gp~G~GKTtl~~~l-~~~~----------------~------------- 60 (287)
++|++.++..+...+-.|. --|++|.|+||+ ||++++++ ++.. .
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~ 293 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRA 293 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCC
Confidence 7889888888888776664 114999999999 99999999 4421 0
Q ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHh---------ccCCcEEEEEeCCCC-----------CCcHHHhcccc
Q psy2281 61 -------GPVIILNETDHLTREAQQALRRTMEK---------YITTCRLILCANSMS-----------QVIPAIRSRCL 112 (287)
Q Consensus 61 -------~~~i~ide~d~l~~~~~~~l~~~i~~---------~~~~~~~i~~~~~~~-----------~l~~~l~sr~~ 112 (287)
+.++++||++.++...|.+|++.|+. .+..+.++-++|-.+ ++.+++.+||.
T Consensus 294 G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFD 372 (506)
T 3f8t_A 294 GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFD 372 (506)
T ss_dssp CHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCS
T ss_pred CeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhhee
Confidence 12999999999999999999999995 334455666655433 68889999994
No 162
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.54 E-value=4.7e-10 Score=107.45 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=64.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----H
Q psy2281 127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----I 194 (287)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i 194 (287)
.+.+.++..|+... ...+.+..+|+|+.|| |..+. +.++++||||+++|......+.+.+.++.+. |
T Consensus 709 ~~~~~L~~~gL~~~-~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 709 RALDTLREVGLGYL-RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCcc-cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 45667777887421 2345678899999999 22222 3688999999999999988898899888765 7
Q ss_pred HhccChhHHHHHHHHHHHH
Q psy2281 195 ISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l 213 (287)
+++|+.+.+ ..+|+++.+
T Consensus 788 visHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp EECCCHHHH-TTCSEEEEE
T ss_pred EEcCCHHHH-HhCCEEEEE
Confidence 799999888 678887765
No 163
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.48 E-value=2.2e-08 Score=82.74 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=29.2
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHH--HH-hC-CCEEEEeCC
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALL--KE-LY-GPVIILNET 69 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~--~~-~~-~~~i~ide~ 69 (287)
-+.+|++ ++|.||||+|||||+++++ +. .. ...++++.-
T Consensus 26 gi~~G~~--~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTT--VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCE--EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCcE--EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 3467888 9999999999999999999 44 22 226666643
No 164
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.44 E-value=3.7e-08 Score=94.92 Aligned_cols=83 Identities=10% Similarity=-0.001 Sum_probs=62.2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----HHh
Q psy2281 129 TNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IIS 196 (287)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~ 196 (287)
...++..|+.. ....+.+..+|+|+.|| |..+. +.++++||||+++|......+.+.+.++.+. |++
T Consensus 826 ~~~L~~~gL~~-~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 826 LETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHTTCSS-SBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCc-ccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45677777731 12345678899999998 33232 2688999999999999988888899888765 779
Q ss_pred ccChhHHHHHHHHHHHH
Q psy2281 197 EQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~~l 213 (287)
+|+.+.+ ..+|+++.+
T Consensus 905 sHdl~~i-~~aDrIivL 920 (972)
T 2r6f_A 905 EHNLDVI-KTADYIIDL 920 (972)
T ss_dssp CCCHHHH-TTCSEEEEE
T ss_pred cCCHHHH-HhCCEEEEE
Confidence 9999876 467877655
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.43 E-value=8.3e-10 Score=101.59 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=90.1
Q ss_pred CCccCcHHHHHHHHH-HHhcCCCCcEEEeCCCCCcHHHHHHH--HHHHhCC--CEEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281 14 QKLDFHCKQANHLRN-LLKEGDFPHLLFYGPSGAGKKTRIMA--LLKELYG--PVIILNETDHLTREAQQALRRTMEKYI 88 (287)
Q Consensus 14 ~~~~~~~~~~~~l~~-~~~~g~~~~~~l~Gp~G~GKTtl~~~--l~~~~~~--~~i~ide~d~l~~~~~~~l~~~i~~~~ 88 (287)
..+.+...+++.+.. -+.+|++ ++|.||||||||||+++ +++...+ ..+++++.+ .........+.+++.+
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~--~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~--~~~~~~~~~~~~g~~~ 94 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRS--TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE--TPQDIIKNARSFGWDL 94 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSE--EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHGGGTCCH
T ss_pred ccccCCchhHHHhcCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC--CHHHHHHHHHHcCCCh
Confidence 334434445666666 6678888 99999999999999999 5677652 278888766 2222222233344444
Q ss_pred CCcE----EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q psy2281 89 TTCR----LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164 (287)
Q Consensus 89 ~~~~----~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~ 164 (287)
|+.. ++.. +..+. .+. .. +++..++ ++...+.+..+|+|+ ++
T Consensus 95 q~~~~~~~l~~~-~~~~~------~~~----~~-------------~l~~~~l--~~~~~~~~~~LS~g~--------~~ 140 (525)
T 1tf7_A 95 AKLVDEGKLFIL-DASPD------PEG----QE-------------VVGGFDL--SALIERINYAIQKYR--------AR 140 (525)
T ss_dssp HHHHHTTSEEEE-ECCCC------SSC----CS-------------CCSSHHH--HHHHHHHHHHHHHHT--------CS
T ss_pred HHhhccCcEEEE-ecCcc------cch----hh-------------hhcccCH--HHHHHHHHHHHHHcC--------CC
Confidence 3321 2221 11110 000 00 0011111 222334445566654 45
Q ss_pred HhhcCCCcccc-----cCccCccHHHHHHHHHHH----HHhccChhHH---------HHHHHHHH
Q psy2281 165 SKVQQYPFQID-----QQIVEPDWKIYIRDTAKL----IISEQSPKKL---------LEVRTRLY 211 (287)
Q Consensus 165 ~~~~dep~~~~-----d~~~~~~~~~~i~~l~~~----i~~~~~~~~~---------~~~~~~~~ 211 (287)
.+++|+|++.. |+.....+.+.+..+.+. ++++|+...+ ..++|+++
T Consensus 141 ~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 141 RVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp EEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred EEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 67889997754 445555666777777655 7788998773 45567655
No 166
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.43 E-value=1.7e-08 Score=97.62 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----HH
Q psy2281 128 LTNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----II 195 (287)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~ 195 (287)
....++..|+.. ....+...++|||+.|| |-.+. +.++++||||+++|......+.+.+.++.+. |+
T Consensus 785 ~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 785 TLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 345566666621 01224456799999999 22221 2588999999999999999999999998765 78
Q ss_pred hccChhHHHHHHHHHHHH
Q psy2281 196 SEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l 213 (287)
++|+.+.+.. +|+++.|
T Consensus 864 I~HdL~~i~~-ADrIivL 880 (916)
T 3pih_A 864 IEHNLDVIKN-ADHIIDL 880 (916)
T ss_dssp ECCCHHHHTT-CSEEEEE
T ss_pred EeCCHHHHHh-CCEEEEe
Confidence 9999987765 7887755
No 167
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.42 E-value=3.9e-08 Score=75.73 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE 68 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide 68 (287)
+...++..+.+|++ ++|.||||+|||||++++++.+ +. .|.+++
T Consensus 22 ~l~~vsl~i~~Ge~--v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 22 AEILLKLHTEKAIM--VYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp HHHHHHHCCSSCEE--EEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred HHhccccccCCCCE--EEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 34445555578888 9999999999999999999998 54 344444
No 168
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.38 E-value=9.3e-08 Score=92.51 Aligned_cols=82 Identities=12% Similarity=0.003 Sum_probs=61.6
Q ss_pred HHHHHHhCCCCCH-HHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----HH
Q psy2281 129 TNICKKEGLTIPP-EFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----II 195 (287)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~ 195 (287)
...++..|+. . ...+.+..+|+|+.|| |..+. +.++++||||+++|......+.+.+.++.+. |+
T Consensus 844 ~~~L~~lgL~--~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 844 LRTLVDVGLG--YVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHTTGG--GSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCC--cccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4566777763 2 2345577899999998 33333 3688999999999999888888889888765 77
Q ss_pred hccChhHHHHHHHHHHHH
Q psy2281 196 SEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l 213 (287)
++|+.+.+ ..+|+++.|
T Consensus 922 isHdl~~i-~~aDrIivL 938 (993)
T 2ygr_A 922 IEHNLDVI-KTSDWIIDL 938 (993)
T ss_dssp ECCCHHHH-TTCSEEEEE
T ss_pred EcCCHHHH-HhCCEEEEE
Confidence 99999876 468887655
No 169
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.37 E-value=2.9e-09 Score=89.44 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=56.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceee
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR 115 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 115 (287)
+++.||||+|||||+++|++...+. .+.+++.+. ... ..++.+..++++..+....+..+++..+...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i-~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~------ 74 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI-PKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI------ 74 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------C-CCC---CSCCEEEESCC----CCEEEEECCCC--CCS------
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc-Ccc---eeeeeeEEEeecCCCcCCceEEechhhhhhc------
Confidence 7899999999999999999988754 455554332 100 0112233344443333333333433222110
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH-H-HHHHHHhhcCCCcccccCcc
Q psy2281 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA-I-LMCEASKVQQYPFQIDQQIV 179 (287)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~a-l-~~l~~~~~~dep~~~~d~~~ 179 (287)
......+.+...+. .........++|+|+.|+. + ..+..+++.|+|+.++++..
T Consensus 75 ~~~~~~~~i~~~~~----------~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD 130 (270)
T 3sop_A 75 NNENCWEPIEKYIN----------EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD 130 (270)
T ss_dssp BCTTCSHHHHHHHH----------HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH
T ss_pred ccHHHHHHHHHHHH----------HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH
Confidence 00111122222222 1223344567899987761 0 01123677899988887554
No 170
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.36 E-value=7e-08 Score=86.08 Aligned_cols=63 Identities=11% Similarity=-0.012 Sum_probs=48.0
Q ss_pred HcCCcHHH-----HHHHHH--HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281 150 QSDRNLRR-----AILMCE--ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL 213 (287)
Q Consensus 150 ~s~G~~r~-----al~~l~--~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l 213 (287)
+|+|+.++ ++...+ .++++|||++++|......+.+.+.++.+. ++++|+...+ ..+|+++.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKV 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEE
Confidence 59998888 344445 788899999999999888888888887522 6799998554 557776644
No 171
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.33 E-value=1.6e-08 Score=86.29 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=30.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~ 75 (287)
++|.||||+||||+++.|++.+.+. -|.+++.|.....
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~ 142 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA 142 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchh
Confidence 8899999999999999999987533 5677777765543
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.29 E-value=4.4e-07 Score=73.91 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=28.2
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELY---GPVIILN 67 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~id 67 (287)
+..|+. ++|+||||+||||+++.+++... +.+++++
T Consensus 20 i~~G~~--~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFF--IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCE--EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCE--EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345666 99999999999999999997653 3366665
No 173
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.28 E-value=5.9e-09 Score=89.96 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHcCCcHHH---HHHH------HHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHH
Q psy2281 147 LAQQSDRNLRR---AILM------CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRL 210 (287)
Q Consensus 147 l~~~s~G~~r~---al~~------l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~ 210 (287)
+..+|+|+.|+ |... .+.++++|||++++|+.....+.+.+.++.+. ++++|+.. +...+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 45789998888 2222 14688899999999988888888777776432 67888854 44455643
No 174
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.26 E-value=3.7e-08 Score=85.79 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=31.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~ 75 (287)
++|+||||+||||+++.|++.+.+. -|.+++.|.....
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~ 199 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA 199 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH
T ss_pred EEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccc
Confidence 8899999999999999999987533 6777777765543
No 175
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.25 E-value=4.2e-06 Score=67.88 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=25.6
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
..+|++ ++|.||||+|||||+++|++...+
T Consensus 13 ~~~G~i--i~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTL--YIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCE--EEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcE--EEEECCCCCCHHHHHHHHhccCCC
Confidence 367777 999999999999999999998764
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.20 E-value=6.3e-07 Score=72.15 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=32.1
Q ss_pred ccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 7 k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
..+|+++. +..+ ++. +.+|++ +.|.||||||||||++++++.
T Consensus 4 ~i~pk~~g----~~~~---l~~-i~~Ge~--~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLG----QKHY---VDA-IDTNTI--VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHH----HHHH---HHH-HHHCSE--EEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHh----HHHH---HHh-ccCCCE--EEEECCCCCCHHHHHHHHhcC
Confidence 45676653 2333 333 378998 999999999999999999997
No 177
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.18 E-value=3.6e-05 Score=81.96 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------EEEEeCCCCCCHHH
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------VIILNETDHLTREA 76 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------~i~ide~d~l~~~~ 76 (287)
..+...+..+.. .++.||+|+|||++++.+++.++.. .+++||++.+..+.
T Consensus 636 ~tl~~Al~~~~~--~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~ev 713 (2695)
T 4akg_A 636 ATLTDSLHQKYG--GCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKV 713 (2695)
T ss_dssp HHHHHHHHTTCE--EEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHH
T ss_pred HHHHHHHHhCCC--CcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHH
Confidence 344445555555 8899999999999999999988644 78999999999887
Q ss_pred HHHHHHHHHh--------------------ccCCcEEEEEeC----CCCCCcHHHhcccceeecCCCCHHHHHHHHH
Q psy2281 77 QQALRRTMEK--------------------YITTCRLILCAN----SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLT 129 (287)
Q Consensus 77 ~~~l~~~i~~--------------------~~~~~~~i~~~~----~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~ 129 (287)
...+...+.. ..+++.++.+.| ....+.+.+++||..+.+..|+.+.+.+++.
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHH
Confidence 6665332221 123455666666 3356899999999999998898877766643
No 178
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.13 E-value=1.3e-06 Score=70.78 Aligned_cols=38 Identities=34% Similarity=0.368 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
..++.++..+.+|++ ++|+|||||||||++++|++...
T Consensus 11 ~~l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -----------CCCC--EEEECSTTSSHHHHHHHHHHHST
T ss_pred ccccCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence 345677777889999 99999999999999999999874
No 179
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.08 E-value=5.3e-07 Score=76.01 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=24.5
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+..|++ ++|+||||+|||||++.++..+
T Consensus 27 l~~G~i--~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTV--GALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSE--EEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCE--EEEEcCCCCCHHHHHHHHHHHH
Confidence 456777 9999999999999999998755
No 180
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.07 E-value=5e-06 Score=72.68 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD 70 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d 70 (287)
+.++..+++|+. ++|.||+|+||||+++++++...+. .|.+++..
T Consensus 166 ~~l~~~i~~G~~--i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~ 212 (361)
T 2gza_A 166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP 212 (361)
T ss_dssp HHHHHHHHTTCC--EEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS
T ss_pred HHHHHHHhcCCE--EEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc
Confidence 777888899999 9999999999999999999987655 78888653
No 181
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.05 E-value=1.4e-06 Score=68.89 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=29.1
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
.+|+. ++|.|||||||||++++|++......+++|+
T Consensus 7 ~~g~~--i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 7 LGGNI--LLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CTTEE--EEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCeE--EEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 45666 9999999999999999999975434677764
No 182
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.03 E-value=6.1e-06 Score=65.03 Aligned_cols=60 Identities=10% Similarity=0.271 Sum_probs=40.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC------------------------------------------------CCEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY------------------------------------------------GPVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~------------------------------------------------~~~i~ide~ 69 (287)
++++||+|+||||++..++.... .++|+|||+
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~ 85 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEV 85 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECc
Confidence 88999999999999854443210 017999999
Q ss_pred CCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 70 DHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 70 d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
+.++++....+....+. +..+++++...
T Consensus 86 Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~ 113 (184)
T 2orw_A 86 QFFNPSLFEVVKDLLDR---GIDVFCAGLDL 113 (184)
T ss_dssp GGSCTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred ccCCHHHHHHHHHHHHC---CCCEEEEeecc
Confidence 98876655555555443 45566655543
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.02 E-value=3.9e-07 Score=78.48 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=28.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT 73 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~ 73 (287)
++|.||||+||||+++.|++.+.+. -|.+++.|...
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 8999999999999999999987543 45556656443
No 184
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.02 E-value=3.2e-06 Score=71.84 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCE
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~ 63 (287)
+++.++..+++|++ ++|+||||+|||||+++|++.+.+.+
T Consensus 115 vL~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 115 ALKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HHHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred hhccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhcCceE
Confidence 45556666688988 99999999999999999999985533
No 185
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.01 E-value=5.2e-06 Score=67.42 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=34.0
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------EEEEeCCCCCCHH
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------VIILNETDHLTRE 75 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------~i~ide~d~l~~~ 75 (287)
+..|++ ++|.|||||||||+++++++....+ +++++..+.....
T Consensus 22 i~~G~~--~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 22 IETQAI--TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp EESSEE--EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCCCcE--EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 456666 9999999999999999999965431 7888876644443
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.00 E-value=1.8e-05 Score=68.88 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=32.6
Q ss_pred CCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.+++++.... ....+ ...+|+. +++.||+||||||+++++++.+.
T Consensus 103 ~~~l~~lg~~~-~l~~l--~~~~~g~--i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 103 VLTMEELGMGE-VFKRV--SDVPRGL--VLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCCTTTTTCCH-HHHHH--HHCSSEE--EEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHcCChH-HHHHH--HhCCCCE--EEEECCCCCCHHHHHHHHHhccc
Confidence 34566665443 33333 3345556 99999999999999999999874
No 187
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.00 E-value=2.3e-06 Score=70.64 Aligned_cols=41 Identities=15% Similarity=-0.037 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
|...+++.++..+.+|.+ +.|.||+||||||++++|++.+.
T Consensus 10 ~~~~~l~~isl~i~~g~i--igI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFL--IGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -------------CCSEE--EEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCceeecceeccCCCCEE--EEEECCCCCCHHHHHHHHHHHhc
Confidence 344566777777788888 99999999999999999999774
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.00 E-value=7.4e-06 Score=74.74 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD 70 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d 70 (287)
...+...++..++.|.. +++.||+||||||+++++++.+.+. ++.+++..
T Consensus 246 ~~~~l~~l~~~v~~g~~--i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFS--AIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CHHHHHHHHHHHHTTCC--EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CHHHHHHHHHHHhCCCE--EEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 45667888888899988 9999999999999999999988765 77777654
No 189
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.98 E-value=2.9e-06 Score=70.78 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=38.3
Q ss_pred CCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCC
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---PVIILNET 69 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~ 69 (287)
+-+++++... .+++.+. +.+|+. ++|+|||||||||+++++++.+.+ ..|+++|.
T Consensus 5 ~~~l~~l~~~-~vl~~i~--i~~g~~--v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 5 IPEFKKLGLP-DKVLELC--HRKMGL--ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp -CCGGGSSCC-THHHHGG--GCSSEE--EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCChHHCCCH-HHHHHHh--hCCCCE--EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3455555443 3555555 677777 999999999999999999998743 24555553
No 190
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.98 E-value=1.1e-05 Score=71.62 Aligned_cols=55 Identities=27% Similarity=0.556 Sum_probs=40.0
Q ss_pred CCCCCccCcHHHHHHHHHHH-hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---EEEEe
Q psy2281 11 NNLQKLDFHCKQANHLRNLL-KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---VIILN 67 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~id 67 (287)
-.++++...+.....++..+ .+|+. ++++||+||||||+++++++.+.+. +++++
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~~~ggi--i~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIKRPHGI--ILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHTSSSEE--EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcCCe--EEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 35666665665555666654 34555 8999999999999999999998754 55544
No 191
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.97 E-value=3e-07 Score=89.02 Aligned_cols=48 Identities=4% Similarity=-0.116 Sum_probs=34.1
Q ss_pred HHHHhhcCCCcccccCccCccHH-HHHHHHHHH-----HHhccChhHHHHHHHHH
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDWK-IYIRDTAKL-----IISEQSPKKLLEVRTRL 210 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~~-~~i~~l~~~-----i~~~~~~~~~~~~~~~~ 210 (287)
.+.++++|||++++|+.....+. .++..+.+. ++++|+.+.. .++++.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 36789999999999987666654 566666552 7799997544 445543
No 192
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.96 E-value=3.7e-06 Score=67.10 Aligned_cols=27 Identities=37% Similarity=0.690 Sum_probs=24.2
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.+|++ ++|.|||||||||++++|++..
T Consensus 5 ~~g~i--i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANL--FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCE--EEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcE--EEEECcCCCCHHHHHHHHHhhC
Confidence 45677 9999999999999999999985
No 193
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=4.7e-06 Score=65.32 Aligned_cols=63 Identities=5% Similarity=-0.112 Sum_probs=38.8
Q ss_pred HHHHcCCcHHH-----H-----HHHHHHHhhcCC--CcccccCccCccHHHHHHHHHH-HHHhc---cChhHHHHHHHH
Q psy2281 147 LAQQSDRNLRR-----A-----ILMCEASKVQQY--PFQIDQQIVEPDWKIYIRDTAK-LIISE---QSPKKLLEVRTR 209 (287)
Q Consensus 147 l~~~s~G~~r~-----a-----l~~l~~~~~~de--p~~~~d~~~~~~~~~~i~~l~~-~i~~~---~~~~~~~~~~~~ 209 (287)
...+|+|+.++ + +...+.++++|| |++.+|+.....+.+.+.+... -++.+ |+...+..++++
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 44578887666 2 344567889999 9999996655444444433111 14455 466777766664
No 194
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.93 E-value=6.6e-05 Score=80.70 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------------------------------CC-------
Q psy2281 24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------------------------------GP------- 62 (287)
Q Consensus 24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------------------------------~~------- 62 (287)
..+..++..|.. ++|+||+|||||.++......+. +.
T Consensus 1295 ~ll~~ll~~~~p--vLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A 1295 DVLHAWLSEHRP--LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp HHHHHHHHTTCC--CEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred HHHHHHHHCCCc--EEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcC
Confidence 455666677766 99999999999988755332211 10
Q ss_pred ----EEEEeCCCCCCH------HHHHHHHHHHHhc------------cCCcEEEEEeCCC-----CCCcHHHhcccceee
Q psy2281 63 ----VIILNETDHLTR------EAQQALRRTMEKY------------ITTCRLILCANSM-----SQVIPAIRSRCLCIR 115 (287)
Q Consensus 63 ----~i~ide~d~l~~------~~~~~l~~~i~~~------------~~~~~~i~~~~~~-----~~l~~~l~sr~~~~~ 115 (287)
++++||++.-.. ...+.|++.+++- -.+..++.+++.+ ..+.+.+.+||.++.
T Consensus 1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence 788999875432 2456677777741 1234566666654 348899999999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy2281 116 IPAPTHEEIVSVLTNICKK 134 (287)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~ 134 (287)
+..|+.+++..+...++..
T Consensus 1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999998887766543
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.93 E-value=5.9e-06 Score=65.89 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=22.9
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+|+. ++|+||||+||||++++|++...
T Consensus 3 ~g~~--i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRP--VVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CC--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCE--EEEECCCCCCHHHHHHHHHhhCc
Confidence 4566 99999999999999999999764
No 196
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.91 E-value=7.7e-06 Score=65.21 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=28.0
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNET 69 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~ 69 (287)
+|++ ++|.|||||||||++++|++.+. .+++|+-
T Consensus 28 ~g~~--i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d 61 (200)
T 4eun_A 28 PTRH--VVVMGVSGSGKTTIAHGVADETG--LEFAEAD 61 (200)
T ss_dssp CCCE--EEEECCTTSCHHHHHHHHHHHHC--CEEEEGG
T ss_pred CCcE--EEEECCCCCCHHHHHHHHHHhhC--CeEEccc
Confidence 4555 99999999999999999999884 4666653
No 197
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=5.4e-06 Score=66.05 Aligned_cols=45 Identities=27% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
..+.++..+.++.. ++|.||+||||||+++.|++.+....+-.|+
T Consensus 14 ~~~~~~~~~~~~~~--i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 14 GTENLYFQSNAMVR--IFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp ----------CCCE--EEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCceeEecCCCCE--EEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 34556666667776 9999999999999999999998765444443
No 198
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.91 E-value=6.5e-06 Score=64.90 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.|||||||||++++|++.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999875
No 199
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.88 E-value=6.8e-06 Score=64.43 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
|+. ++|.|||||||||++++|++...
T Consensus 5 g~~--i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKT--LVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCE--EEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence 445 89999999999999999999764
No 200
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.85 E-value=7.7e-06 Score=65.22 Aligned_cols=42 Identities=38% Similarity=0.472 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--CC-EEEEeC
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--GP-VIILNE 68 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~~-~i~ide 68 (287)
.......+|.. ++|.|||||||||++++|++.+. +. .+++|+
T Consensus 17 ~~~~~~~~g~~--i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 17 RQRLLDQKGCV--IWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp HHHHHTSCCEE--EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred HHHhcCCCCeE--EEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 33333455666 99999999999999999999874 22 347774
No 201
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.85 E-value=1.1e-05 Score=69.96 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET 69 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~ 69 (287)
..+++.+ ..+.+|+. +.|.||||+|||||+++|++...++ ++.+.+.
T Consensus 59 ~~ald~l-l~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQR--IGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CHHHHHH-SCEETTCE--EEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CEEEEee-eeecCCCE--EEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 3456666 55688988 9999999999999999999998877 4555553
No 202
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.84 E-value=0.0001 Score=59.05 Aligned_cols=25 Identities=48% Similarity=0.571 Sum_probs=22.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
++|.|||||||+|.++.|+..+...
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 6899999999999999999887543
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.83 E-value=1.2e-05 Score=62.21 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|+|||||||||++++|++.+.. .++|
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~~--~~id 34 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLNM--EFYD 34 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTC--EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--CEEe
Confidence 999999999999999999998774 4555
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.83 E-value=6e-06 Score=66.32 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG---P--VIILNETD 70 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d 70 (287)
+.|.||||||||||+++|++.+.+ . .|.+|+.+
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 899999999999999999998862 2 56666644
No 205
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.81 E-value=0.00014 Score=67.54 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCCCCCccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALL 56 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~ 56 (287)
|.....++|.......+...+.. +..+.+.|+||.|+|||||+..++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence 66677899999999999888853 222238999999999999998886
No 206
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.81 E-value=1.4e-05 Score=71.45 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET 69 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~ 69 (287)
..+++.+ ..+.+|+. +.|.||||||||||+++|++...++ .+.+++.
T Consensus 145 ~~vld~v-l~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQR--MGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBTTCE--EEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeee-EEecCCCE--EEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 3466666 66688888 9999999999999999999998776 6666664
No 207
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.81 E-value=2.4e-06 Score=84.02 Aligned_cols=49 Identities=4% Similarity=-0.087 Sum_probs=36.4
Q ss_pred HHHHHhhcCCCcccccCccC-ccHHHHHHHHHHH-----HHhccChhHHHHHHHH
Q psy2281 161 MCEASKVQQYPFQIDQQIVE-PDWKIYIRDTAKL-----IISEQSPKKLLEVRTR 209 (287)
Q Consensus 161 ~l~~~~~~dep~~~~d~~~~-~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~ 209 (287)
..+.++++|||++++|+... ......+..+.+. +++||+.+.+...+++
T Consensus 867 ~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 867 TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 34688999999999997653 4456777777654 7799998887766554
No 208
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.80 E-value=1.4e-05 Score=68.00 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=29.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL 72 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l 72 (287)
++|.|||||||||+++++++.+.+. -|.+++.|..
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 8999999999999999999998654 6677777754
No 209
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.79 E-value=1.5e-05 Score=63.06 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
|+. ++|+||||+||||+++++++.+.
T Consensus 1 G~~--i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARH--VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCC--EEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCE--EEEECCCCChHHHHHHHHHhhcc
Confidence 455 89999999999999999999873
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.79 E-value=0.00035 Score=56.05 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
++|.||+||||||+++.|+..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999877644
No 211
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.78 E-value=1.1e-05 Score=64.88 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.5
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+|.+ ++|.||||+||||+++.|++.+.+
T Consensus 7 ~g~~--i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLL--IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCE--EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcE--EEEECcCCCCHHHHHHHHHhhCCC
Confidence 4555 999999999999999999998754
No 212
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.78 E-value=1.8e-05 Score=65.38 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 20 CKQANHLRNLLKE---GDFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 20 ~~~~~~l~~~~~~---g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
..+++.++..+.+ |+. ++|+||+||||||+++.|++.+..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~--i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRS--MYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCC--EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhhhhcCCCE--EEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567777777777 888 999999999999999999998875
No 213
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.77 E-value=1.1e-05 Score=64.36 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=24.9
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
.+|.. ++|.|||||||||+++.|++.+.+
T Consensus 4 ~~g~~--i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 4 EKGLL--IVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CCCCE--EEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHHHhhCC
Confidence 45666 999999999999999999998743
No 214
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.77 E-value=0.00015 Score=61.41 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=68.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC------CC--------------------------CCH-HHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNET------DH--------------------------LTR-EAQQALRRTM 84 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~------d~--------------------------l~~-~~~~~l~~~i 84 (287)
++|.||+|+||||++..++..+.+.+|-.|.. +. .+. .-+....+.+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i 85 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI 85 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence 78999999999999999998876433333321 11 111 1122334455
Q ss_pred HhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHH--------HHcCCcH
Q psy2281 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLA--------QQSDRNL 155 (287)
Q Consensus 85 ~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--------~~s~G~~ 155 (287)
+.......+.+.+....--..++..- +.+.+. .+.++++.+...++..|. +...+.+. .....|.
T Consensus 86 ~~i~~~gk~pIlVGGTglYi~aLl~g---~~~~~~~~~~~~R~~l~~~~~~~g~---~~L~~~L~~~DP~~A~~i~pnd~ 159 (322)
T 3exa_A 86 TEIHERGRLPFLVGGTGLYVNAVIHQ---FNLGDIRADEDYRHELEAFVNSYGV---QALHDKLSKIDPKAAAAIHPNNY 159 (322)
T ss_dssp HHHHHTTCEEEEESCCHHHHHHHHHT---CCCCCCBCCHHHHHHHHHHHHHSCH---HHHHHHHHTTCHHHHTTSCTTCH
T ss_pred HHHHhCCCcEEEEcCcHHHHHHHHcC---CcCCCCCCCHHHHHHHHHHHHhcCH---HHHHHHHHhhCHHHHhhcCcccH
Confidence 55433333332222221111222211 124333 344677777777777664 22333332 3467899
Q ss_pred HHHHHHHHHHhhcCCCccc
Q psy2281 156 RRAILMCEASKVQQYPFQI 174 (287)
Q Consensus 156 r~al~~l~~~~~~dep~~~ 174 (287)
+|.+..++-+.....|.+.
T Consensus 160 ~Ri~RALEV~~~TG~~~S~ 178 (322)
T 3exa_A 160 RRVIRALEIIKLTGKTVTE 178 (322)
T ss_dssp HHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHCCCHHH
Confidence 9988888877766666544
No 215
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.74 E-value=1.7e-05 Score=61.55 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=24.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
++|.|||||||||+++++++.+. .+++|.
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~ 39 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLH--AAFLDG 39 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT--CEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHhhC--cEEEeC
Confidence 89999999999999999999875 455554
No 216
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.74 E-value=2.2e-05 Score=67.77 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+...+...+++|+.++++|+||+|+||||++++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445556666788888899999999999999999998875
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.74 E-value=1.1e-05 Score=64.72 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=24.3
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+|.. +.|.||+||||||++++|++.+.+
T Consensus 5 ~~~~--i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 5 KPFV--IGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CCEE--EEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CcEE--EEEECCCCCCHHHHHHHHHHHhCC
Confidence 4455 899999999999999999998763
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.73 E-value=1.7e-05 Score=62.43 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|.|||||||||++++|++...+ .+++|
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~ 33 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIE 33 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred EEEECCCCCcHHHHHHHHhcccCC-eEEEc
Confidence 789999999999999999986544 45555
No 219
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.73 E-value=0.00018 Score=56.50 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.||||+||||+++.|.....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999987753
No 220
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.72 E-value=4.5e-05 Score=65.17 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=27.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~ 69 (287)
++|+||+||||||+++.|++.+...++-.|..
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 89999999999999999999987655555543
No 221
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.70 E-value=2.9e-05 Score=66.33 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.1
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
.+|.+ +.|.|||||||||++++|++.+.
T Consensus 78 ~~g~i--igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYI--ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEE--EEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEE--EEEECCCCCCHHHHHHHHHHHHh
Confidence 34445 89999999999999999999876
No 222
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.70 E-value=3.3e-05 Score=60.02 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVII 65 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ 65 (287)
++++|+|||||||+++.|+..+....+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 8999999999999999999988654443
No 223
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=97.69 E-value=1.6e-05 Score=62.45 Aligned_cols=62 Identities=0% Similarity=-0.029 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHh
Q psy2281 202 KLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281 (287)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~ 281 (287)
...+-.+..|++++. +.|++ +.+..+++.+|.+||..|+.++. ||+|++.+++++|||
T Consensus 27 ~yDk~Gd~HYd~ISA--------------f~KSi----RGSDpDAALywLaRMl~~GEDp~----~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 27 VYDKNGQNHFDVISA--------------FIKSI----RGSDPDATLYWLANMVEAGEDPN----FIFRRLLISACEDIG 84 (213)
T ss_dssp -------CHHHHHHH--------------HHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHTTG
T ss_pred ccCCCchHHHHHHHH--------------HHHHH----hcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhcc
Confidence 344555666766654 66766 88889999999999999998887 999999999999999
Q ss_pred hhhc
Q psy2281 282 TLSN 285 (287)
Q Consensus 282 ~~~~ 285 (287)
|||.
T Consensus 85 lAdP 88 (213)
T 3ctd_A 85 LADP 88 (213)
T ss_dssp GGST
T ss_pred CCCH
Confidence 9984
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.69 E-value=3.4e-05 Score=69.50 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=29.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR 74 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~ 74 (287)
++|+|||||||||++++|++.+.+. -|.+++.|....
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 334 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH
T ss_pred EEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch
Confidence 8999999999999999999987533 566666675543
No 225
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.68 E-value=1.1e-05 Score=65.89 Aligned_cols=29 Identities=41% Similarity=0.527 Sum_probs=19.2
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHH-HHh
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALL-KEL 59 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~-~~~ 59 (287)
.+.+|++ ++|+|||||||||++++|+ +..
T Consensus 23 ~v~~G~i--i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVI--LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCE--EEEECSCC----CHHHHHHC---
T ss_pred ccCCCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence 3466777 9999999999999999999 876
No 226
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=97.67 E-value=2.9e-05 Score=60.44 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285 (287)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 285 (287)
+.|++ +.+..+.+.+|.+||..|+.++. ||+|++.+++++||||||.
T Consensus 14 f~KSi----RGSDpDAAly~LaRMl~~GEDp~----~IaRRLvi~AsEDIGlAdP 60 (201)
T 3bge_A 14 LHKSV----RGSAPDAALYWYARILTAGGDPL----YVARRLLAIASEDVGNADP 60 (201)
T ss_dssp HHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHTTGGGCT
T ss_pred HHHHH----hCCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhccCCCH
Confidence 66666 88889999999999999998887 9999999999999999984
No 227
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=2.9e-05 Score=68.02 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=26.4
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
+..|+. ++|+||||+||||+++++++...+.
T Consensus 166 i~~~~~--i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 166 IPKKRY--WLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp CTTCCE--EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred cCCCCE--EEEECCCCCCHHHHHHHHHhhcCCc
Confidence 355665 9999999999999999999988664
No 228
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.67 E-value=1.6e-05 Score=68.02 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+.|.||||||||||+++|++.+.+
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 899999999999999999998764
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=4e-05 Score=62.65 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=33.1
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHH--hC-------CCEEEEeCCCCCCHH
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKE--LY-------GPVIILNETDHLTRE 75 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~--~~-------~~~i~ide~d~l~~~ 75 (287)
+..|+. ++|+||||+||||+++.++.. .. ..+++++..+.+...
T Consensus 21 i~~G~~--~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 73 (243)
T 1n0w_A 21 IETGSI--TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE 73 (243)
T ss_dssp EETTSE--EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred CcCCeE--EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence 345666 999999999999999999995 31 228888876644444
No 230
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.66 E-value=0.00036 Score=55.94 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIIL 66 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i 66 (287)
++|.||+||||||+++.|+..+....+-.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999998876543333
No 231
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.64 E-value=2.8e-05 Score=61.76 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.3
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+|+. ++|.||+|+|||||+++|++...
T Consensus 18 ~g~~--ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKT--LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCE--EEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCE--EEEECcCCCCHHHHHHHHHhhCC
Confidence 3445 89999999999999999998764
No 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.62 E-value=0.00024 Score=60.12 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
++|.||+|+||||++..++..+.+.+|-.|.
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 7899999999999999999988754444443
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.62 E-value=1e-05 Score=68.57 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEeC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-PVIILNE 68 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~ide 68 (287)
..++.+..-+..|++ ++|.||||+||||+++.+++... + .+++++.
T Consensus 23 ~~Ld~i~~~l~~G~~--~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 23 TGINDKTLGARGGEV--IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTHHHHHCSBCTTCE--EEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHHhcCCCCCeE--EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 345555555677888 99999999999999999998874 3 3666653
No 234
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.60 E-value=4.8e-05 Score=63.02 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=26.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
++|.|||||||||+++.|++.+...++-.|+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999988766555554
No 235
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.00016 Score=59.04 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=19.2
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALL 56 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~ 56 (287)
.+|+. +++.||+||||||++..++
T Consensus 74 ~~g~~--~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSV--VIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSE--EEEECCTTSSHHHHHHHHH
T ss_pred hcCCE--EEEEeCCCCCcHHhHHHHH
Confidence 35666 9999999999999776554
No 236
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.59 E-value=5.4e-05 Score=59.02 Aligned_cols=31 Identities=42% Similarity=0.419 Sum_probs=26.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide 68 (287)
++|.|++||||||+++.+++.+ ..+.+.+|+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 8999999999999999999987 444666763
No 237
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.59 E-value=5.7e-05 Score=64.65 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=21.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.|.|||||||||++++|.+.+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999876
No 238
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.58 E-value=1.5e-05 Score=70.73 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
...++..+..|+.++++|+||||+|||||+++|++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 6677777788988779999999999999999999864
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.58 E-value=0.00011 Score=59.02 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=31.3
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR 74 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~ 74 (287)
..|+. ++|+||||+||||+++.++......+++++..+.++.
T Consensus 18 ~~G~~--~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~ 59 (220)
T 2cvh_A 18 APGVL--TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSP 59 (220)
T ss_dssp CTTSE--EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCH
T ss_pred cCCEE--EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCH
Confidence 34555 8999999999999999999833334888886543443
No 240
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=4e-05 Score=63.08 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.|||||||||++++|+..+.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999997664
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.57 E-value=4.5e-05 Score=60.89 Aligned_cols=27 Identities=41% Similarity=0.488 Sum_probs=23.5
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
.|.. ++|.|||||||||+++.|+..+.
T Consensus 11 ~~~~--i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPP--LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCC--EEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCE--EEEECCCCCCHHHHHHHHHHhCc
Confidence 4555 99999999999999999998774
No 242
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.56 E-value=4.5e-05 Score=58.77 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
++|.||+||||||+++.|+..+...
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999988754
No 243
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.56 E-value=4.6e-05 Score=63.06 Aligned_cols=31 Identities=39% Similarity=0.551 Sum_probs=26.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
++|.|||||||||+++.|++.+....+++|.
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 8899999999999999999988654566664
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.55 E-value=0.00012 Score=61.67 Aligned_cols=30 Identities=33% Similarity=0.602 Sum_probs=25.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|.|||||||||+++.++..+....+.|+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 889999999999999999988743356665
No 245
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.55 E-value=0.00074 Score=72.88 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=76.8
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------EEEEeCCCCCCHHHH
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------VIILNETDHLTREAQ 77 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------~i~ide~d~l~~~~~ 77 (287)
.+...+..+-. ..+.||.|+|||++++.+++.++-. -.++||++++..+..
T Consensus 596 tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vL 673 (3245)
T 3vkg_A 596 TLTQALESRMG--GNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERIL 673 (3245)
T ss_dssp HHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHH
T ss_pred HHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHH
Confidence 34444454444 6789999999999999999988644 568999999988765
Q ss_pred HHHHHHHHh---------------------ccCCcEEEEEeCC----CCCCcHHHhcccceeecCCCCHHHHHHHHHHHH
Q psy2281 78 QALRRTMEK---------------------YITTCRLILCANS----MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132 (287)
Q Consensus 78 ~~l~~~i~~---------------------~~~~~~~i~~~~~----~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~ 132 (287)
..+...+.. ..+++.+++++|. ...+.+.+++||..+.+..|+.+.+.+++ +
T Consensus 674 Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L 750 (3245)
T 3vkg_A 674 SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---L 750 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH---H
Confidence 554443320 1234566666663 35699999999999999999887766654 2
Q ss_pred HHhCCC
Q psy2281 133 KKEGLT 138 (287)
Q Consensus 133 ~~~~~~ 138 (287)
-..|+.
T Consensus 751 ~s~Gf~ 756 (3245)
T 3vkg_A 751 YSQGFK 756 (3245)
T ss_dssp HTTTCS
T ss_pred HHcccc
Confidence 344553
No 246
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.54 E-value=0.00089 Score=67.29 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=38.3
Q ss_pred CCCCCCccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 10 PNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 10 p~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
|.....++|....++.|...+.. +....+.|+|+.|+|||||++.++..
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 55667789999999999888843 22223889999999999999887654
No 247
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.53 E-value=5.9e-05 Score=59.00 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=25.5
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
.++|+||+||||||+++.|+..+....+-.|
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3899999999999999999998875444333
No 248
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.52 E-value=4.1e-05 Score=59.47 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=25.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP-----VIILNETD 70 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d 70 (287)
+.|+||+||||||+++.|++.+.+. .|.+|+.+
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 8899999999999999999997643 67888765
No 249
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.52 E-value=8.9e-05 Score=64.37 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=32.2
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---------CCEEEEeCCCCC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY---------GPVIILNETDHL 72 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---------~~~i~ide~d~l 72 (287)
..|++ +.|+||||+|||||++.++.... +.++++|..+.+
T Consensus 129 ~~G~i--~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 129 ETQAI--TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp ESSEE--EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CCCeE--EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 44555 89999999999999999999872 336999986654
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.52 E-value=5.8e-05 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|++.+..
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998864
No 251
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.51 E-value=0.00015 Score=67.05 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--------------------------------------
Q psy2281 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-------------------------------------- 60 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------------------------------------- 60 (287)
+......+..... +.. +++.|||||||||++.+++..+.
T Consensus 191 ~~~Q~~Av~~~~~-~~~--~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~ 267 (574)
T 3e1s_A 191 SEEQASVLDQLAG-HRL--VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGP 267 (574)
T ss_dssp CHHHHHHHHHHTT-CSE--EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEET
T ss_pred CHHHHHHHHHHHh-CCE--EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCc
Confidence 3455566665553 333 89999999999999998876431
Q ss_pred ------------CCEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281 61 ------------GPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM 100 (287)
Q Consensus 61 ------------~~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~ 100 (287)
.++++|||+..++......+ +...+...++++.....
T Consensus 268 ~~~~~~~~~~~~~dvlIIDEasml~~~~~~~L---l~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 268 QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSL---LAAVPPGARVLLVGDTD 316 (574)
T ss_dssp TEESCSSSSCCSCSEEEECCGGGCCHHHHHHH---HTTSCTTCEEEEEECTT
T ss_pred chhhhhhcccccCCEEEEcCccCCCHHHHHHH---HHhCcCCCEEEEEeccc
Confidence 01799999998876644444 44445567777776543
No 252
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.50 E-value=0.00053 Score=58.91 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=26.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~ 69 (287)
++|.||+||||||+++.|+..+...+|-.|..
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 88999999999999999999887544444443
No 253
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.50 E-value=6.9e-05 Score=58.17 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.9
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
.++|.|||||||||+++.|++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3899999999999999999998874
No 254
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.49 E-value=3.4e-05 Score=66.71 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=24.9
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.+|.. +.|.||||+|||||++++++.+.
T Consensus 52 ~~~g~~--v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIR--VGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEE--EEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeE--EEEECCCCCCHHHHHHHHHHhhh
Confidence 355666 99999999999999999998874
No 255
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.47 E-value=4.4e-05 Score=66.72 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
|+. ++|+||||||||||+++|++.+.+.
T Consensus 170 g~k--~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKT--VAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEE--EEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCe--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555 9999999999999999999998753
No 256
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.47 E-value=6.2e-05 Score=62.25 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=24.0
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
..|.. +.|.||+||||||++++|+..+.
T Consensus 25 ~~g~~--I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPV--ITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcE--EEEECCCCCCHHHHHHHHHHhcC
Confidence 44555 99999999999999999997765
No 257
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.46 E-value=6.8e-05 Score=58.55 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=22.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
.+|+||||+||||++++|...+.+
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999998765
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.44 E-value=7.7e-05 Score=60.34 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+.|.||+||||||+++.|++.+..
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998763
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.43 E-value=5.8e-05 Score=58.16 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVI 64 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i 64 (287)
++|.||+||||||+++.| ..+....+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 789999999999999999 65554333
No 260
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=97.43 E-value=3.7e-05 Score=59.96 Aligned_cols=46 Identities=4% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285 (287)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 285 (287)
+.|++ +.+..+++.+|.+||..|+ ++. ||+|++.+++++||||||.
T Consensus 21 f~KSi----RGSDpDAAly~LaRml~~G-Dp~----~IaRRLvi~AsEDIGlAdP 66 (204)
T 2r9g_A 21 FQKSI----RGSDVDAALHYLARLVEAG-DLA----SICRRLMVIGYEDIGLGNP 66 (204)
T ss_dssp HHHHH----HTTCHHHHHHHHHHHHHHT-CHH----HHHHHHHHHHHHTTGGGCH
T ss_pred HHHHH----hcCCHHHHHHHHHHHHHcC-CHH----HHHHHHHHHHHhhccCCCH
Confidence 56666 7888899999999999999 766 8999999999999999974
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.41 E-value=0.00011 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
++|+|++||||||+++.++..+...
T Consensus 14 i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 9999999999999999999887654
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.41 E-value=8.4e-05 Score=58.27 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.||+||||||+++.|+..+.
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999775
No 263
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.41 E-value=6.4e-05 Score=58.84 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=22.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999987753
No 264
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.38 E-value=0.00023 Score=69.34 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.8
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALL 56 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~ 56 (287)
..|++ ++|+||||+||||+++.++
T Consensus 660 ~~g~i--~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMF--HIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCE--EEEECCTTSSHHHHHHHHH
T ss_pred CCCeE--EEEECCCCCCHHHHHHHHH
Confidence 34666 9999999999999999984
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.36 E-value=9.9e-05 Score=57.27 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
++|.|||||||||+++.|+..
T Consensus 5 I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 789999999999999999983
No 266
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.36 E-value=0.00029 Score=57.02 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=20.8
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
..|.+ ++++||+|+||||++..++...
T Consensus 10 ~~G~i--~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWI--EFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEE--EEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEE--EEEECCCCCcHHHHHHHHHHHH
Confidence 34555 8999999999999887766554
No 267
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.36 E-value=0.00037 Score=59.33 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
++|+||||+||||++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999864
No 268
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.36 E-value=0.00011 Score=56.54 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=25.8
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
+++|.|++||||||+++.|+..+..+++-.|
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4899999999999999999998876544333
No 269
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.36 E-value=3.3e-05 Score=67.04 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++.|.... .|+. ++|.||||+|||||+++|++...
T Consensus 206 l~~L~~~~-~G~~--~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEAL-TGRI--SIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHH-TTSE--EEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhc-CCCE--EEEECCCCccHHHHHHHHhcccc
Confidence 44555443 5777 99999999999999999998765
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.35 E-value=0.00014 Score=56.80 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVI 64 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i 64 (287)
++|.|++||||||+++.|+..+...++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 899999999999999999998875433
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.35 E-value=7.9e-05 Score=65.27 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=25.2
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.+|+. ++++||+||||||+++++++.+.
T Consensus 133 ~~~g~~--i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGL--ILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEE--EEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCE--EEEECCCCCCHHHHHHHHHhhcC
Confidence 355666 99999999999999999999875
No 272
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.34 E-value=9.3e-05 Score=66.71 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=30.3
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD 70 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d 70 (287)
.+ ++ +.|.||||||||||+++|++.+.+. .|.+++.+
T Consensus 28 ~~-e~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 28 DE-LV--TTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp CS-SE--EEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred cc-ce--EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 44 55 8999999999999999999998765 56666654
No 273
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.34 E-value=6.8e-05 Score=61.09 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
+.|.||+||||||++++|++. .+.+++..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~ 51 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLLT 51 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEEe
Confidence 899999999999999999987 55455444
No 274
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.33 E-value=0.00029 Score=56.03 Aligned_cols=29 Identities=31% Similarity=0.209 Sum_probs=24.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---CCCEEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---YGPVIIL 66 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~i 66 (287)
+.+.||+||||||+++.+++.+ .+.++++
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 8999999999999999999976 3335555
No 275
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.33 E-value=0.00023 Score=55.90 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=27.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide~ 69 (287)
++|.|++||||||+++.|+..+ ...++..|+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~ 37 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREP 37 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899999999999999999987 4446777764
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.33 E-value=0.00012 Score=57.61 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=24.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|.|++||||||+++.++..+....+-.|
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 899999999999999999998765444333
No 277
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.31 E-value=0.00032 Score=59.22 Aligned_cols=23 Identities=30% Similarity=0.693 Sum_probs=21.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.|.||+||||||+++.|++.+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998875
No 278
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=0.00012 Score=57.49 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.|++||||||+++.|+..+.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999875
No 279
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.31 E-value=0.00024 Score=55.98 Aligned_cols=32 Identities=38% Similarity=0.477 Sum_probs=26.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide~ 69 (287)
++|.|++||||||+++.|+..+ ..+++..++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 37 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCC
Confidence 7899999999999999999987 5557766663
No 280
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.30 E-value=3.9e-05 Score=62.35 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=24.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETD 70 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d 70 (287)
++|+|||||||||++++|++.+.+. .|.+++.+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 6899999999999999999999866 45666654
No 281
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00013 Score=57.98 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=25.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|.|++||||||+++.|+..+....+-.|
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999998865444443
No 282
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.30 E-value=0.00019 Score=62.20 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCc---EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCH
Q psy2281 24 NHLRNLLKEGDFPH---LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTR 74 (287)
Q Consensus 24 ~~l~~~~~~g~~~~---~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~ 74 (287)
..|...+..|.+|. ++|+||||+|||||+..++.... +.++++|.-+....
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence 35555554233332 89999999999999999988753 34888987665543
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.30 E-value=0.00022 Score=62.97 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=34.3
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHh-C--------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKEL-Y--------GPVIILNETDHLTREAQQALRRTM 84 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~-~--------~~~i~ide~d~l~~~~~~~l~~~i 84 (287)
..|++ +.|+||||+|||||++.++-.. . ..++++|.-+.+.......+.+.+
T Consensus 176 ~~Gei--~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~ 236 (400)
T 3lda_A 176 ETGSI--TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRF 236 (400)
T ss_dssp ETTSE--EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCCcE--EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHc
Confidence 34555 9999999999999999765332 2 128899977655554333333333
No 284
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.29 E-value=0.00014 Score=66.77 Aligned_cols=46 Identities=33% Similarity=0.375 Sum_probs=33.8
Q ss_pred HHHHHHHHH----HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----CEEEEeC
Q psy2281 21 KQANHLRNL----LKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----PVIILNE 68 (287)
Q Consensus 21 ~~~~~l~~~----~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~~i~ide 68 (287)
++...++.. +.+|.. ++|+|+|||||||++++|++.+.+ .+.++|+
T Consensus 353 eV~~vLR~~~~~~~~~G~i--I~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 353 EVLAELHRQTPPRERQGFT--VFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp HHHHHHHHHSCCGGGSCEE--EEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred chhhhhhhhcccccccceE--EEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 344444443 345666 999999999999999999999863 2556775
No 285
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.29 E-value=0.0002 Score=60.86 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=28.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCCCCCCHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNETDHLTREA 76 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~d~l~~~~ 76 (287)
++++||||+||||++..+++.+... ++++| .|......
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~-~D~~r~~a 147 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA-ADTFRAAA 147 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-ECTTCHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc-cccccHHH
Confidence 7899999999999999999887432 44444 55444443
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.29 E-value=0.00018 Score=56.58 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998764
No 287
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=58.55 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLK 57 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~ 57 (287)
++|+||+||||||+++.|++
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 288
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.27 E-value=0.00015 Score=55.65 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=25.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide 68 (287)
++|.|++||||||+++.|+..+...++-.|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 33 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE 33 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence 7899999999999999999987754444343
No 289
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.27 E-value=0.00016 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|++.+..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEECCCccCHHHHHHHHHHhcCC
Confidence 789999999999999999998874
No 290
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.27 E-value=0.00032 Score=62.38 Aligned_cols=24 Identities=33% Similarity=0.224 Sum_probs=21.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++++|+|||||||+++.++..+..
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCc
Confidence 889999999999999999987753
No 291
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00014 Score=57.04 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG---PVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~id 67 (287)
++|.|++||||||+++.++..+.. .++++|
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 899999999999999999988742 255665
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.26 E-value=0.00016 Score=56.69 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.8
Q ss_pred cEEEeCCCCCcHHHHHHHHHHH
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.++|+|++||||||+++.|+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999998
No 293
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.25 E-value=0.00013 Score=57.98 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVII 65 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ 65 (287)
++|+|++||||||+++.|++ +...++-
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 78999999999999999999 5433333
No 294
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00019 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
++|.|++||||||+++.|+..+...
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8999999999999999999987643
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.24 E-value=0.00015 Score=57.81 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=25.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC--CEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG--PVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~--~~i~ide 68 (287)
++|.|++||||||+++.|+..+.. +++..++
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 39 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW 39 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC
Confidence 899999999999999999998764 3555544
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.23 E-value=0.00022 Score=56.61 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC-CCEEEEeCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY-GPVIILNETD 70 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~-~~~i~ide~d 70 (287)
++|.|++||||||+++.|+..+. .+++.+++..
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~ 40 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ 40 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 89999999999999999999873 3366677654
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.22 E-value=0.0002 Score=57.72 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
++|.|++||||||+++.|+..+...
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCce
Confidence 8999999999999999999988743
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.21 E-value=0.00042 Score=56.89 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|||||||||+++.|+..+..
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999988764
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.21 E-value=0.00024 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=22.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998764
No 300
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00021 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999988764
No 301
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.20 E-value=0.00059 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.2
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
|.+ .+++||.|+||||.+.-++...
T Consensus 8 g~i--~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWV--EVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred CEE--EEEECCCCCcHHHHHHHHHHHH
Confidence 444 8999999999999987776554
No 302
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=0.00011 Score=62.40 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=25.4
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
.|+. +.|.||||+|||||+++|++...+.
T Consensus 168 ~gei--v~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 168 KGKI--STMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp SSSE--EEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred cCCe--EEEECCCCCcHHHHHHHhccccccc
Confidence 4666 8999999999999999999987654
No 303
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00015 Score=56.52 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVI 64 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i 64 (287)
++|.|++||||||+++.|+..+...++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 899999999999999999988775433
No 304
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.0001 Score=58.87 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
++|.||+||||||+++.|++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999976
No 305
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=0.00019 Score=57.57 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=27.8
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CCEEEEe
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY----GPVIILN 67 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~~i~id 67 (287)
..|.+ ++|.|++||||||+++.|++.+. ...+++|
T Consensus 23 ~~~~~--i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLT--IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEE--EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44555 89999999999999999998775 2266675
No 306
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.15 E-value=0.00026 Score=57.13 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=22.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.||+||||||+++.|+..+..
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998863
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.15 E-value=0.00038 Score=57.76 Aligned_cols=30 Identities=33% Similarity=0.350 Sum_probs=24.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH---hCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE---LYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~---~~~~~i~id 67 (287)
++|.|+|||||||+++.|+.. ....++++|
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 899999999999999999987 333345454
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.14 E-value=0.00021 Score=57.01 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=24.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG---PVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~ 69 (287)
++|.|++||||||+++.|+..+.. ++.++.+.
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~ 47 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFP 47 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 899999999999999999987542 24445543
No 309
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.14 E-value=0.00057 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=20.7
Q ss_pred cCCCCcEEEeCCCCCcHH-HHHHHHHHHh
Q psy2281 32 EGDFPHLLFYGPSGAGKK-TRIMALLKEL 59 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKT-tl~~~l~~~~ 59 (287)
.|.+ ++++||.|+||| .|++++.+..
T Consensus 19 ~g~l--~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 19 RGQI--QVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp CCEE--EEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEE--EEEECCCCCcHHHHHHHHHHHHH
Confidence 3555 899999999999 7788876654
No 310
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.14 E-value=0.00068 Score=63.77 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
-+....+++...+....+ .+|.||||||||+++-.+...
T Consensus 190 LN~~Q~~AV~~al~~~~~--~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKEL--AIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CCHHHHHHHHHHHHCSSE--EEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCc--eEEECCCCCCHHHHHHHHHHH
Confidence 366777888888766555 899999999999876544433
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.14 E-value=0.0002 Score=57.46 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIIL 66 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i 66 (287)
++|.||+||||||+++.|+..+....+-.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999876444433
No 312
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.12 E-value=0.00028 Score=53.36 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
.+|+||||+||||++.+|.-.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999999987653
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.0014 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998865
No 314
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.11 E-value=0.0003 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+.|.||+||||||+++.|++.+..
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999988763
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.11 E-value=0.00026 Score=55.43 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999998764
No 316
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.11 E-value=0.00023 Score=56.86 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNET 69 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~ 69 (287)
++|.|++||||||+++.|+..+. .++..+++.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~ 46 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP 46 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 89999999999999999998753 225555543
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.10 E-value=0.00031 Score=56.63 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|||||||+|.++.|+..+..
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 788999999999999999998863
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.10 E-value=0.00025 Score=57.43 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 899999999999999999988764
No 319
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.10 E-value=0.00023 Score=60.45 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.6
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
.|+. +.|.||||+|||||+++|+ ...+.
T Consensus 164 ~G~i--~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 164 EGFI--CILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp TTCE--EEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred cCcE--EEEECCCCCCHHHHHHHHH-HhhCc
Confidence 3566 8999999999999999999 66543
No 320
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.00023 Score=57.35 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIIL 66 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i 66 (287)
++|.|++||||||+++.|+..+....+-.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 89999999999999999999886543333
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00068 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 322
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.07 E-value=0.0003 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.||+|+|||||++.+++...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 79999999999999999998753
No 323
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.07 E-value=0.00028 Score=57.41 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=27.1
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhC--CCEEEEeC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELY--GPVIILNE 68 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~~~i~ide 68 (287)
.|.+ ++|.||+||||||+++.|+..+. ..++...+
T Consensus 25 ~g~~--i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 61 (229)
T 4eaq_A 25 MSAF--ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE 61 (229)
T ss_dssp CCEE--EEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT
T ss_pred CCeE--EEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC
Confidence 3444 89999999999999999999886 24554443
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.07 E-value=0.00032 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCc
Confidence 889999999999999999988753
No 325
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.00034 Score=56.15 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+......+......+..+.+++.|++|+||||+++.+++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 445566666666555666699999999999999999998753
No 326
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.06 E-value=0.0019 Score=60.27 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.9
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALL 56 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~ 56 (287)
+++.||+||||||++..+.
T Consensus 167 ~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 167 SVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp EEEECCTTSTHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 8999999999999977654
No 327
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.06 E-value=0.00028 Score=55.52 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+++.||+|+|||||++.+++...+
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCCC
Confidence 799999999999999999997653
No 328
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.04 E-value=0.00038 Score=56.30 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=23.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIIL 66 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i 66 (287)
++|.||+||||||+++.|+..+....+..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999876433333
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.04 E-value=0.0019 Score=49.53 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998654
No 330
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.02 E-value=0.00098 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 331
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.02 E-value=0.00044 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 36 PHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 36 ~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+-++|.||+|+||||+++.+++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 3389999999999999999998753
No 332
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=8e-05 Score=63.31 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=21.7
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+|+. +.|.||||+|||||+++|++...+
T Consensus 172 ~G~~--~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 172 QDKT--TVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp TTSE--EEEEESHHHHHHHHHHHHCC----
T ss_pred CCCE--EEEECCCCCCHHHHHHHhcccccc
Confidence 4566 999999999999999999886543
No 333
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.01 E-value=0.00042 Score=56.42 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVI 64 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i 64 (287)
++|.|++||||||+++.|+..+....+
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 899999999999999999998874333
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.99 E-value=0.00069 Score=57.97 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=27.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~ 75 (287)
++++||+|+||||++..|++.+... -+.+.+.|.....
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG 147 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 7899999999999999999887532 3344445655444
No 335
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.97 E-value=0.0063 Score=45.75 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 336
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.0018 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHhcCCC
Confidence 89999999999999999998764
No 337
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.96 E-value=0.0002 Score=57.19 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.|++||||||+++.|+..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998875
No 338
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.96 E-value=0.001 Score=52.81 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+....+.+.........-.+++.|++|+|||||++.+++..
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33344444444433333238999999999999999998654
No 339
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.96 E-value=0.00038 Score=58.96 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=24.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY---G-PVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~id 67 (287)
++|+||+|+||||++..|++.+. + .+.++|
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 89999999999999999998774 2 255555
No 340
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.96 E-value=0.0013 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 341
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.95 E-value=0.0005 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+.|.|++||||||+++.+++.+..
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 889999999999999999998764
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.94 E-value=0.00041 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCE
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPV 63 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~ 63 (287)
+.|+|++||||||+++.++..+..++
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~v 40 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHV 40 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 78999999999999999999866433
No 343
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.92 E-value=0.0018 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=19.0
Q ss_pred hcCCCCcEEEeCCCCCcHHH-HHHHHHHH
Q psy2281 31 KEGDFPHLLFYGPSGAGKKT-RIMALLKE 58 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTt-l~~~l~~~ 58 (287)
..|.+ .+++||-|+|||| +++.+-+.
T Consensus 26 ~~G~I--~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 26 HSGWI--ECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp -CCEE--EEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceE--EEEECCCCCCHHHHHHHHHHHH
Confidence 34555 7999999999999 56665443
No 344
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00035 Score=57.01 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=27.9
Q ss_pred HhcCCCCcEEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeCC
Q psy2281 30 LKEGDFPHLLFYGPSGAGKKTRIMALLKEL---YGPVIILNET 69 (287)
Q Consensus 30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide~ 69 (287)
+..|+. ++++||||+||||++..++... ...+++++.-
T Consensus 20 l~~G~~--~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNV--VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCE--EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcE--EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 356666 9999999999999987776543 2337777743
No 345
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.92 E-value=0.0017 Score=49.02 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998764
No 346
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.92 E-value=0.0018 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+||||+++.+.+...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCcC
Confidence 89999999999999999987643
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.90 E-value=0.00068 Score=52.30 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 36 PHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 36 ~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+-+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3388999999999999999998763
No 348
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.90 E-value=0.00048 Score=60.14 Aligned_cols=63 Identities=10% Similarity=-0.059 Sum_probs=46.0
Q ss_pred HHHHcCCcHHH-----HHH------HHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHH
Q psy2281 147 LAQQSDRNLRR-----AIL------MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRL 210 (287)
Q Consensus 147 l~~~s~G~~r~-----al~------~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~ 210 (287)
+.++|+|+.|+ |+. ..|.++++|||++++|+.....+.+.+.++.+. ++++|+.+. ...+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEE
Confidence 34689998888 222 245678899999999998888888888877543 679999875 3344443
No 349
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.89 E-value=0.0023 Score=48.43 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998765
No 350
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.89 E-value=0.0018 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999988653
No 351
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.89 E-value=0.0011 Score=53.40 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
...+.++........+.+++.|++|+||||++..++....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3455666666555555589999999999999999998764
No 352
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.88 E-value=0.0023 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998765
No 353
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.87 E-value=0.00058 Score=55.66 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+.|.|++||||||+++.|++.+..
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 899999999999999999998763
No 354
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.86 E-value=0.00031 Score=65.49 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 34 DFPHLLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
..|.++++|||||||||++++|++...+
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 3455999999999999999999998644
No 355
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.86 E-value=0.0082 Score=47.17 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999998765
No 356
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.86 E-value=0.0023 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 357
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.85 E-value=0.00087 Score=59.00 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=27.8
Q ss_pred CCCcEEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeC
Q psy2281 34 DFPHLLFYGPSGAGKKTRIMALLKELYG---PVIILNE 68 (287)
Q Consensus 34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide 68 (287)
..+|+++.||+|+||||+++.++..... .++++|-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3456999999999999999999876543 2777773
No 358
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.84 E-value=0.0013 Score=56.41 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---------CCCEEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---------YGPVIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---------~~~~i~ide~d~l~~~ 75 (287)
+.|+||||+||||++..++... ...+++++--+.+...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~ 156 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWE 156 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence 8999999999999999998764 2238888865544444
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.83 E-value=0.0028 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+++..
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998743
No 360
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.83 E-value=0.00065 Score=60.63 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=24.2
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
.|++ .+|+||||+||||++.+++..+.+.
T Consensus 25 ~~~~--~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNF--TSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSE--EEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCE--EEEECCCCCCHHHHHHHHHhhhccc
Confidence 3455 8999999999999999999987653
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.83 E-value=0.00069 Score=55.82 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|++||||||+++.|+..+..
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 889999999999999999997664
No 362
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.83 E-value=0.0023 Score=48.57 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+.+..
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 363
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.82 E-value=0.00066 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.|++||||||+++.|+. +.
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TT
T ss_pred EEEECCCCCCHHHHHHHHHH-cC
Confidence 88999999999999999988 44
No 364
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.82 E-value=0.00065 Score=54.15 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
.+|+||||+||||++.+|.-.+.+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 799999999999999999877765
No 365
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.82 E-value=0.002 Score=49.71 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998654
No 366
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.81 E-value=0.0019 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998864
No 367
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.0013 Score=56.85 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=29.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---------CCCEEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---------YGPVIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---------~~~~i~ide~d~l~~~ 75 (287)
+.|+||||+||||++..++... ...+++||--+.+...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~ 171 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD 171 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence 8999999999999999998863 2238888865544444
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.81 E-value=0.0027 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 369
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.80 E-value=0.00061 Score=53.85 Aligned_cols=21 Identities=29% Similarity=0.231 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
++|.|++||||||+++.|++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 899999999999999999997
No 370
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.80 E-value=0.0017 Score=51.96 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=17.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.+++||-|+||||.+.-++...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999887665443
No 371
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.78 E-value=0.00059 Score=65.49 Aligned_cols=48 Identities=2% Similarity=-0.164 Sum_probs=34.4
Q ss_pred HHHHhhcCCCcccccCccCccH-HHHHHHHHHH-----HHhccChhHHHHHHHHH
Q psy2281 162 CEASKVQQYPFQIDQQIVEPDW-KIYIRDTAKL-----IISEQSPKKLLEVRTRL 210 (287)
Q Consensus 162 l~~~~~~dep~~~~d~~~~~~~-~~~i~~l~~~-----i~~~~~~~~~~~~~~~~ 210 (287)
.+.++++|||++++|+.....+ ...+..+.+. ++++|+.+.. .+++++
T Consensus 686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~ 739 (800)
T 1wb9_A 686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKM 739 (800)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHS
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhh
Confidence 4688899999999887765543 5667777662 7789998654 466654
No 372
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.77 E-value=0.0038 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 373
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.77 E-value=0.00061 Score=58.42 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=25.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|.||+|+||||++..|++.+.+.+|-.|
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 899999999999999999998875433333
No 374
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.77 E-value=0.0027 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 8999999999999999998654
No 375
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.76 E-value=0.0007 Score=64.61 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.4
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
|++ ++|+||||+||||+++++++..
T Consensus 576 g~i--~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HEL--VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCE--EEEESCSSSSHHHHHHHHHHHH
T ss_pred CcE--EEEECCCCCChHHHHHHHHhhh
Confidence 566 8999999999999999999864
No 376
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.76 E-value=0.0022 Score=49.29 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+.+..
T Consensus 11 i~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998654
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.75 E-value=0.012 Score=45.08 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 9 i~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998543
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.75 E-value=0.0016 Score=55.03 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=27.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~ 75 (287)
+.++|++|+||||++..+++.+... -+.+.+.|.....
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~ 140 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh
Confidence 7889999999999999999887522 3444445654433
No 379
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.75 E-value=0.0027 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 8999999999999999998754
No 380
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.74 E-value=0.00058 Score=59.18 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=29.5
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLT 73 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~ 73 (287)
.|+. ++|+||||+||||++..++.... ..++++|--+...
T Consensus 60 ~G~i--v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~ 102 (349)
T 2zr9_A 60 RGRV--IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD 102 (349)
T ss_dssp TTSE--EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC
Confidence 4444 89999999999999988886542 3478888544343
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.74 E-value=0.0033 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998765
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.74 E-value=0.0032 Score=49.06 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
No 383
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.74 E-value=0.00063 Score=51.94 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
No 384
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.73 E-value=0.0028 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998754
No 385
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.72 E-value=0.0011 Score=53.07 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+..++++++|++|+||||+++.+++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445699999999999999999998653
No 386
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.72 E-value=0.0039 Score=59.77 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.+...+..|+. +++.||+|+||||++..++..
T Consensus 101 ~i~~~l~~~~~--vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNNQI--MVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 44444566666 999999999999987776543
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.72 E-value=0.0031 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.0037 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 389
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.71 E-value=0.0036 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 17 i~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998754
No 390
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.71 E-value=0.0096 Score=48.46 Aligned_cols=37 Identities=30% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
......+..+.+. .. +++.||+|+|||.++.+++...
T Consensus 96 ~~Q~~ai~~~~~~-~~--~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 96 DYQEKALERWLVD-KR--GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHHHHHTTT-SE--EEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC-CC--EEEEeCCCCCHHHHHHHHHHHc
Confidence 3445555555543 33 8999999999999987776554
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.71 E-value=0.00018 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++++++..
T Consensus 29 v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 29 VAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998755
No 392
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.71 E-value=0.0016 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 899999999999999998653
No 393
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.71 E-value=0.0021 Score=48.81 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLK 57 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~ 57 (287)
+++.|++|+|||||++.+++
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 79999999999999999964
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.71 E-value=0.0035 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 395
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.70 E-value=0.0033 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+++...
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.70 E-value=0.0096 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998654
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.69 E-value=0.00057 Score=58.49 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 36 PHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 36 ~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
|-++|+|++|+||||+++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 348999999999999999999875
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.69 E-value=0.0018 Score=67.41 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=21.0
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.|+. ++|+||||||||||+.+++..
T Consensus 1426 ~g~~--vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A 1426 MGRI--VEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp TTSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHH
Confidence 4444 999999999999999888655
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.67 E-value=0.00093 Score=56.44 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
++|.|+|||||||+++.|+...
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999864
No 400
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.67 E-value=0.003 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.66 E-value=0.0043 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
.++|.|++|+|||||++++++...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 389999999999999999987543
No 402
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0042 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 13 i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987654
No 403
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.65 E-value=0.0068 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.||+|+||||++..|+..+.
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHHH
Confidence 88999999999999999987664
No 404
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.65 E-value=0.0046 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987643
No 405
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.0041 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 406
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.63 E-value=0.00061 Score=62.45 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
-+.+|+. ++|.||||+|||||++.+++...
T Consensus 277 ~i~~G~i--~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSI--ILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCE--EEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence 3466777 99999999999999999998764
No 407
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.62 E-value=0.023 Score=45.21 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.5
Q ss_pred EEEeCCCCCcHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALL 56 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~ 56 (287)
+++.+|.|+|||..+-..+
T Consensus 54 ~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCchhhhhhHHH
Confidence 9999999999998654433
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.61 E-value=0.00059 Score=57.92 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.||||+|||||+++|++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999998875
No 409
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.61 E-value=0.00072 Score=52.64 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999873
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.61 E-value=0.012 Score=44.13 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHcCCc
Confidence 78999999999999999987543
No 411
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.60 E-value=0.0011 Score=57.60 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.+|+||||+||||++.++....
T Consensus 29 ~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 29 TGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHhc
Confidence 8999999999999999998754
No 412
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.57 E-value=0.0011 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 36 PHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 36 ~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+.+++.|++|+||||+++.+++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348999999999999999998754
No 413
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.56 E-value=0.0013 Score=56.99 Aligned_cols=22 Identities=45% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+.|.|+||+|||||++++++..
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999865
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.56 E-value=0.009 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+++...
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.56 E-value=0.0052 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 416
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.55 E-value=0.0052 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 417
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.55 E-value=0.0011 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
No 418
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0041 Score=48.51 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+||||+++.+.+..
T Consensus 21 i~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 419
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.53 E-value=0.0014 Score=56.63 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=44.3
Q ss_pred HHHHcCCcHHH-----HHHH------HHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHH
Q psy2281 147 LAQQSDRNLRR-----AILM------CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRL 210 (287)
Q Consensus 147 l~~~s~G~~r~-----al~~------l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~ 210 (287)
+..+|+|+.++ .+.. .|.++++|||++++|+.....+.+.+.++.+. ++++|+.. +...++++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCEE
Confidence 35688998775 1222 36788899999999988887777777776543 67899854 44555543
No 420
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.53 E-value=0.0053 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999998764
No 421
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0036 Score=49.68 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 422
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.52 E-value=0.00091 Score=59.33 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|+||||+|||||++++++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999999999998754
No 423
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.52 E-value=0.00086 Score=57.95 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.+.|+||+||||+++.+++.+.
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998763
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.51 E-value=0.0041 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 425
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.51 E-value=0.0028 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+.+.
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999854
No 426
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.50 E-value=0.0038 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998754
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.49 E-value=0.0038 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 31 i~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 8999999999999999998654
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.49 E-value=0.0054 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 10 i~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998754
No 429
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.49 E-value=0.00087 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.||+|+||||++..++....
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999988654
No 430
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.49 E-value=0.0034 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=8.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999987654
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0045 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+++.|++|+|||||++.+++...
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEECcCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.48 E-value=0.0035 Score=49.21 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=18.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 23 i~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999997543
No 433
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0039 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 434
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0017 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.8
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.++++|++|+||||+++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998854
No 435
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.46 E-value=0.0035 Score=55.64 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=28.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCCCCCCHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNETDHLTREA 76 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~d~l~~~~ 76 (287)
+++.||+|+||||++..+++.+... +.++| +|...+.+
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd-~D~~r~aa 141 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA-ADTQRPAA 141 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE-CCSSCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee-ccccCchh
Confidence 7889999999999999999887543 54444 57555444
No 436
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.46 E-value=0.002 Score=57.24 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=27.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCCCCCCHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNETDHLTREAQ 77 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~d~l~~~~~ 77 (287)
+++.||+|+||||++..|+..+... +++++ +|.....+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~-~D~~r~~a~ 141 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA-ADVYRPAAY 141 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE-ECCSCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe-cCccchhHH
Confidence 7899999999999999999876422 55544 344444433
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.46 E-value=0.0012 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999753
No 438
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.003 Score=49.35 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999997543
No 439
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.46 E-value=0.0061 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
++++|++|+|||||++.+++.-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998654
No 440
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.46 E-value=0.0015 Score=52.47 Aligned_cols=46 Identities=28% Similarity=0.322 Sum_probs=31.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCCCCCCHHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG---PVIILNETDHLTREAQQALRRTME 85 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~d~l~~~~~~~l~~~i~ 85 (287)
++|.|++|+||||+++.++..+.. .++...+.. -++ .-..++..+.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~-~~~-~g~~i~~~l~ 57 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTP-LAERIRELLL 57 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC-SSH-HHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC-CCH-HHHHHHHHHh
Confidence 889999999999999999988753 266666653 222 2234455544
No 441
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.017 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.8
Q ss_pred cEEEeCCCCCcHHHHHHHHHHH
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.+++.|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999853
No 442
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.44 E-value=0.006 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 8999999999999999998754
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.43 E-value=0.0023 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
+.|.|++||||||+++.++..+..
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC
Confidence 899999999999999999998763
No 444
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.43 E-value=0.0038 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEeCCCCCcHHHHHHH-HHHH
Q psy2281 38 LLFYGPSGAGKKTRIMA-LLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~-l~~~ 58 (287)
+++.|++|+|||||++. +.+.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 89999999999999998 4444
No 445
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0065 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 16 i~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.43 E-value=0.0013 Score=53.33 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=25.1
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhC-------CCEEEEeCC
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELY-------GPVIILNET 69 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------~~~i~ide~ 69 (287)
+|.+ ++|.||+|+||||+++.++..+. .++++..+.
T Consensus 24 ~g~~--I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 24 RGKF--ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCE--EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 4555 89999999999999999988763 235666665
No 447
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.42 E-value=0.0019 Score=56.67 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=24.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id 67 (287)
++|.||+|+||||++..|+..+.+.+|-.|
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 789999999999999999998875444333
No 448
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.41 E-value=0.0024 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGP 62 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~ 62 (287)
+.|.|||||||||.++.|+..+...
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999988643
No 449
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.41 E-value=0.016 Score=45.33 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+.+.
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 999999999999999988764
No 450
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.40 E-value=0.0082 Score=50.96 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=27.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh-----CCCEEEEeCCCCCCH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL-----YGPVIILNETDHLTR 74 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~-----~~~~i~ide~d~l~~ 74 (287)
+.++||||+|||||+..++... ...++++|.-+.+..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 7899999999999976655443 233889997766654
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.40 E-value=0.0052 Score=48.43 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 8999999999999999998654
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.39 E-value=0.00086 Score=56.58 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
+.|.||+||||||+++.|+..+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998654
No 453
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.38 E-value=0.0015 Score=54.76 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY 60 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~ 60 (287)
++|.|++||||||+++.|+. +.
T Consensus 78 I~I~G~~GSGKSTva~~La~-lg 99 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN-LG 99 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH-HT
T ss_pred EEEECCCCCCHHHHHHHHHH-CC
Confidence 78999999999999999994 44
No 454
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.37 E-value=0.005 Score=47.88 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=28.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRR 82 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~ 82 (287)
++++|++||||||++..++.. ..++++++=......+-+..+.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHH
Confidence 689999999999999999876 55578887544333333333333
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.35 E-value=0.0015 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
++|.|+||+||||++..+...
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 899999999999999998873
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.35 E-value=0.002 Score=52.59 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=27.0
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C-EEEEeCC
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKELYG---P-VIILNET 69 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~-~i~ide~ 69 (287)
|.+ ++|.|++|+||||+++.++..+.. . +++..+.
T Consensus 27 ~~~--i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 27 AKF--IVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCE--EEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CeE--EEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 444 899999999999999999887642 2 5556654
No 457
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.33 E-value=0.0017 Score=56.30 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=27.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLT 73 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~ 73 (287)
++|+||||+||||++..++.... ..++++|--+...
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 104 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 89999999999999988886642 3488888644443
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.32 E-value=0.0095 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998653
No 459
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.32 E-value=0.0082 Score=48.05 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=15.1
Q ss_pred cCCCCcEEEeCCCCCcHHHH
Q psy2281 32 EGDFPHLLFYGPSGAGKKTR 51 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl 51 (287)
+|.. +++.+|.|+|||..
T Consensus 50 ~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 50 EGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp TTCC--EEEECCTTSSHHHH
T ss_pred cCCC--EEEECCCCCcHHHH
Confidence 4544 99999999999977
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.32 E-value=0.0022 Score=51.51 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=27.7
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHhCC----CEEEEeCCC
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKELYG----PVIILNETD 70 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~~i~ide~d 70 (287)
|.+ +.|.|++|+||||.++.++..+.. .+++..|..
T Consensus 3 g~~--i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 3 SKY--IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG 42 (213)
T ss_dssp CCE--EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CeE--EEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence 455 899999999999999999887632 356666643
No 461
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.32 E-value=0.0023 Score=51.49 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=35.4
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHH
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTME 85 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~~i~ 85 (287)
+|.+ ++|.|++|+||||.++.++..+...+.++.+...-++ .-..++..+.
T Consensus 4 ~g~~--i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~-~g~~ir~~l~ 54 (216)
T 3tmk_A 4 RGKL--ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTR-IGGLINEYLT 54 (216)
T ss_dssp CCCE--EEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSH-HHHHHHHHHH
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCCh-HHHHHHHHHH
Confidence 3555 8999999999999999999998765566666532222 2234455554
No 462
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.30 E-value=0.0018 Score=56.91 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+.|.|+||+|||||+++|++.
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999993
No 463
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.29 E-value=0.012 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.2
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.+++.|++|+||||+++.+.+..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998643
No 464
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 8999999999999999997643
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.27 E-value=0.0027 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.4
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.+++.|++|+||||+++.+.+..
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999998643
No 466
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.26 E-value=0.0054 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999999754
No 467
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.24 E-value=0.0044 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=19.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
++|+||||+|||+++..++..
T Consensus 101 ~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998875
No 468
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0018 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.7
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.++|.|++|+|||||++++++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998764
No 469
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0023 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 470
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.22 E-value=0.0033 Score=56.49 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.9
Q ss_pred hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEe
Q psy2281 31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-PVIILN 67 (287)
Q Consensus 31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~id 67 (287)
..|+. +++.|+||+||||++..++.... + +++++.
T Consensus 201 ~~G~l--iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDL--IIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCE--EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44555 99999999999999999887653 2 366665
No 471
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.21 E-value=0.009 Score=51.79 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+..+.++|+|++|+||||++..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 333348999999999999999998876
No 472
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.21 E-value=0.0035 Score=53.20 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.3
Q ss_pred CCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 33 GDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 33 g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
|.. ++|.|+||+||||++..+.+.
T Consensus 144 g~~--vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVG--VLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEE--EEEEESTTSSHHHHHHHHHHT
T ss_pred CEE--EEEEeCCCCCHHHHHHHHHhc
Confidence 555 999999999999999999874
No 473
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.20 E-value=0.0034 Score=58.37 Aligned_cols=30 Identities=43% Similarity=0.442 Sum_probs=26.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~id 67 (287)
++|.|++||||||+++.|+..+ ....+.+|
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 8999999999999999999988 54566775
No 474
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.20 E-value=0.0044 Score=57.05 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=32.3
Q ss_pred cCcHHHHHHHHHHHhcC---CCCcEEEeCCCCCcHHHHHHHHHH
Q psy2281 17 DFHCKQANHLRNLLKEG---DFPHLLFYGPSGAGKKTRIMALLK 57 (287)
Q Consensus 17 ~~~~~~~~~l~~~~~~g---~~~~~~l~Gp~G~GKTtl~~~l~~ 57 (287)
+|....++.+...+..+ ....+.|+|+.|+|||||++.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 48888888887777443 222388999999999999999996
No 475
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.18 E-value=0.011 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=17.9
Q ss_pred cCCCCcEEEeCCCCCcHHHHH-HHHHHH
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRI-MALLKE 58 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~-~~l~~~ 58 (287)
+|+. +++.+|+|+|||..+ ..+...
T Consensus 37 ~~~~--~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 37 EGKD--LIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TTCC--EEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCC--EEEECCCCChHHHHHHHHHHHH
Confidence 4544 999999999999873 333343
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.17 E-value=0.0023 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 35 FPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 35 ~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.+.+++.|++|+||||+++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 344999999999999999999864
No 477
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.17 E-value=0.003 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 478
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.15 E-value=0.0045 Score=56.19 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=26.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC-----CEEEEeC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG-----PVIILNE 68 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~-----~~i~ide 68 (287)
++|.|.+||||||++++|+..+.. .+-++|.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg 433 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH 433 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence 899999999999999999999874 1456664
No 479
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.14 E-value=0.0032 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999999864
No 480
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.13 E-value=0.0043 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=21.6
Q ss_pred CCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 35 FPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 35 ~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.||+++.|++|+||||+++++...
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 481
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.13 E-value=0.0029 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8999999999999999998863
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.13 E-value=0.0029 Score=51.11 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC----CEEE-EeCCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG----PVII-LNETD 70 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~----~~i~-ide~d 70 (287)
+.|.|++|+||||+++.++..+.. ++++ ..|-.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 889999999999999999987754 3444 55544
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.11 E-value=0.0023 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELYG 61 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~~ 61 (287)
++|.|+.||||||+++.|+..+.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC
Confidence 889999999999999999998754
No 484
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.11 E-value=0.0027 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 36 PHLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 36 ~~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+.+++.|++|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 349999999999999999998764
No 485
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.10 E-value=0.0024 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 36 PHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 36 ~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
|.+++.|++|+|||||++++.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999876
No 486
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.09 E-value=0.003 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 8999999999999999998643
No 487
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.09 E-value=0.0026 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
++|.|+||+|||||++++++..
T Consensus 11 VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999998763
No 488
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.08 E-value=0.003 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=20.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 17 i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998654
No 489
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.05 E-value=0.0032 Score=49.22 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.1
Q ss_pred cEEEeCCCCCcHHHHHHHHHHH
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.+++.|++|+||||+++.+++.
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 490
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.05 E-value=0.0038 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+++..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999888754
No 491
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.05 E-value=0.012 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|.+|+|||+|++.+....
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 8999999999999999987654
No 492
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.02 E-value=0.0038 Score=52.74 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=27.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTRE 75 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~~ 75 (287)
+++.|++|+||||++..++..+. ..++++| .|.....
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~-~D~~r~~ 140 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG-ADVYRPA 140 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE-CCCSSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe-cCCCCHH
Confidence 78899999999999999998774 2355555 4543333
No 493
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.99 E-value=0.0033 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.5
Q ss_pred cCCCCcEEEeCCCCCcHHHHHHHHHH
Q psy2281 32 EGDFPHLLFYGPSGAGKKTRIMALLK 57 (287)
Q Consensus 32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~ 57 (287)
.|.. +++.|+||+|||+++.-++.
T Consensus 29 ~G~l--~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTT--VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCeE--EEEEeCCCCCHHHHHHHHHH
Confidence 4455 89999999999999876653
No 494
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.98 E-value=0.0034 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
+++.|++|+|||||++.+++.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 495
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.96 E-value=0.0066 Score=56.11 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC----CCEEEEe
Q psy2281 38 LLFYGPSGAGKKTRIMALLKELY----GPVIILN 67 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~~----~~~i~id 67 (287)
++|.|++||||||++++|+..+. ...+++|
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 78999999999999999999875 3356666
No 496
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=95.95 E-value=5e-05 Score=57.47 Aligned_cols=64 Identities=9% Similarity=-0.027 Sum_probs=45.5
Q ss_pred HHHHcCCcHHHH-----------HHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281 147 LAQQSDRNLRRA-----------ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY 211 (287)
Q Consensus 147 l~~~s~G~~r~a-----------l~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~ 211 (287)
+.++|+|+.+++ +...+.++++|||++++|......+.+.+.++.+. ++++|+. .+...+++++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii 133 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVI 133 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEE
Confidence 456788877773 22236788899999999988888888888777543 6789987 4555555443
No 497
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.93 E-value=0.025 Score=52.32 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281 21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
.++..+...+.+|. .++++.+|.|+|||..+-.++..
T Consensus 185 ~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 185 IAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp HHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHH
Confidence 33444433344443 23899999999999987665543
No 498
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.91 E-value=0.0028 Score=49.10 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.3
Q ss_pred cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281 37 HLLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 37 ~~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
.+++.|++|+||||+++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 48999999999999999998753
No 499
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.90 E-value=0.0047 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=19.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy2281 38 LLFYGPSGAGKKTRIMALLKEL 59 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~~ 59 (287)
+++.|++|+|||||++.+.+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999999887754
No 500
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.89 E-value=0.0035 Score=52.30 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy2281 38 LLFYGPSGAGKKTRIMALLKE 58 (287)
Q Consensus 38 ~~l~Gp~G~GKTtl~~~l~~~ 58 (287)
++|.|+||+|||||++.+++.
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999874
Done!