Your job contains 1 sequence.
>psy2281
MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY
GPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPT
HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE
PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLK
SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2281
(287 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 648 1.0e-88 2
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 587 3.6e-76 2
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 519 2.5e-73 2
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 737 5.9e-73 1
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 734 1.2e-72 1
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 732 2.0e-72 1
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 732 2.0e-72 1
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 729 4.1e-72 1
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 729 4.1e-72 1
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 727 6.7e-72 1
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 721 2.9e-71 1
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 524 1.4e-70 2
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 495 4.7e-68 2
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 458 8.8e-63 2
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 373 1.3e-55 2
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 403 2.0e-55 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 503 3.7e-48 1
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 503 3.7e-48 1
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 259 2.7e-36 2
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 259 2.7e-36 2
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 180 4.1e-22 2
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 170 2.7e-21 2
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 171 4.5e-21 2
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 170 6.1e-21 2
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 176 4.5e-20 2
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 167 4.7e-20 2
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 167 4.7e-20 2
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 161 7.6e-20 2
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 150 9.1e-20 2
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 159 9.2e-20 2
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 159 1.4e-19 2
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 166 1.4e-19 2
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 149 1.5e-19 2
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 156 1.7e-19 2
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 159 1.7e-19 2
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 153 2.2e-19 2
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 155 3.0e-19 2
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 145 9.3e-18 2
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 158 1.2e-17 2
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 155 2.4e-17 2
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 153 4.7e-17 2
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 152 5.8e-17 2
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 150 1.5e-16 2
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 148 1.9e-16 2
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 152 2.1e-16 2
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 147 2.6e-16 2
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 138 9.9e-16 2
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 153 1.1e-15 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 138 1.9e-15 2
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 142 9.3e-15 2
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 153 5.8e-14 2
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 142 9.4e-14 2
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 146 2.1e-13 2
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 132 2.1e-13 2
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 174 2.5e-11 2
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 176 2.7e-11 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 169 2.0e-10 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 169 2.1e-10 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 161 4.7e-10 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 166 4.9e-10 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 144 1.1e-09 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 144 1.1e-09 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 159 3.2e-09 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 157 4.6e-09 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 157 5.7e-09 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 154 5.8e-09 2
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 156 6.4e-09 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 156 6.4e-09 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 153 1.4e-08 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 153 1.4e-08 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 152 1.7e-08 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 152 1.7e-08 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 152 1.8e-08 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 152 1.9e-08 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 144 2.0e-08 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 151 2.9e-08 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 150 3.7e-08 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 149 5.0e-08 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 148 6.6e-08 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 147 8.3e-08 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 147 9.5e-08 1
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 127 2.2e-06 1
UNIPROTKB|Q9KQI3 - symbol:VC_2015 "DNA polymerase III, de... 128 1.0e-05 1
TIGR_CMR|VC_2015 - symbol:VC_2015 "DNA polymerase III, de... 128 1.0e-05 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 105 4.0e-05 2
RGD|620619 - symbol:Rfc1 "replication factor C (activator... 100 0.00015 3
GENEDB_PFALCIPARUM|PFB0895c - symbol:PFB0895c "replicatio... 103 0.00034 2
UNIPROTKB|O96271 - symbol:PFB0895c "Replication factor C ... 103 0.00034 2
UNIPROTKB|Q3AG11 - symbol:CHY_0051 "Putative DNA polymera... 113 0.00035 1
TIGR_CMR|CHY_0051 - symbol:CHY_0051 "putative DNA polymer... 113 0.00035 1
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 648 (233.2 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 118/219 (53%), Positives = 168/219 (76%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
VI+++E D LT++AQ ALRRTMEKY+ TCR+I+ NS S++IPAIRSRCL IR+ AP
Sbjct: 170 VIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNET 229
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EIVS+L N CK+EGL +P E A R+ +S+RNLRRA+LM EA+KV + PF +Q+I + D
Sbjct: 230 EIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLD 289
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++++R+TA IISEQ+P KL ++R RLYELL +P N++F+ L+E L+ NCD +K+K
Sbjct: 290 WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAK 349
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
++E A +EHR+ G+K IFH+EA+VA FM +Y +F+ +
Sbjct: 350 TLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSE 388
Score = 257 (95.5 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+LWVDKYRP L KLDFH QA +LRNL K+ DFPHL+FYGPSGAGKKTRIM LL+E+Y
Sbjct: 40 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 99
Query: 61 G 61
G
Sbjct: 100 G 100
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 587 (211.7 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 119/220 (54%), Positives = 156/220 (70%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++LNE D L+REAQ +LRRTMEKY ++CRLILC NS S+V AI+SRCL +RI AP+ E
Sbjct: 133 VLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EIV VL + KKE L +P FA R+A++S+R+LRRAIL E +VQ YPF +Q I D
Sbjct: 193 EIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMD 252
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ Y+ + A ++ EQSPKKL +VR ++YELLV+ IP V+ K LL LL DS+LK +
Sbjct: 253 WEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLE 312
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDT 282
AA +EHR+ G K IFHIEA+VA FM++Y F+ T
Sbjct: 313 VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLIST 352
Score = 199 (75.1 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 38/59 (64%), Positives = 45/59 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
LWVDKYRP +L K+ H A L+ L+ E D PHLLFYGPSG+GKKT IMALLK++YG
Sbjct: 2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 519 (187.8 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 103/216 (47%), Positives = 145/216 (67%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++ILNE D L+++AQ ALRRTMEKY T CRLILC +S ++VI I+SRCL IR+PAP+ E
Sbjct: 131 IVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI VL + E +P + A+ +A+QS NLR A+++ E+ K +QYPFQ ++ D
Sbjct: 191 EIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ-STELPLLD 249
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ YI K EQSP +L VR +LYELL H IP ++FK LL + D ++K +
Sbjct: 250 WENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFE 309
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
I A+ +EHR GSKPIFH+EA++A FM++Y ++
Sbjct: 310 IIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
Score = 240 (89.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 41/71 (57%), Positives = 57/71 (80%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW+DKY+P +L K+D+H + +L+N++K GDFPHLL YGPSGAGKKTRI+A+L+E+YGP
Sbjct: 2 LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61
Query: 63 VIILNETDHLT 73
+ + DH T
Sbjct: 62 NALKLKIDHRT 72
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 135/224 (60%), Positives = 177/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E D
Sbjct: 191 DICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 68/174 (39%), Positives = 96/174 (55%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPA-IRSRCLCIR 115
G + +H T + + + L + NS VI +++ +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ + ++ V +LT + K LT + ALR + + R IL C + SKV
Sbjct: 121 LETSSQKDFKVVLLTEVDK---LTKDAQHALRRTMEKYMSTCRLILCCNSTSKV 171
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 137/224 (61%), Positives = 177/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL IR+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I SVL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E D
Sbjct: 191 DICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP V+ K LL LL NCD LK +
Sbjct: 251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELLHNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 68/174 (39%), Positives = 96/174 (55%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPA-IRSRCLCIR 115
G + +H T + + + L + NS VI +++ +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ + + V +LT + K LT + ALR + + R IL C + SKV
Sbjct: 121 LETSSQRDFKVVLLTEVDK---LTKDAQHALRRTMEKYMSTCRLILCCNSTSKV 171
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 135/224 (60%), Positives = 176/224 (78%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E D
Sbjct: 191 DICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+SEQ+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 251 WEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 68/174 (39%), Positives = 95/174 (54%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPA-IRSRCLCIR 115
G + +H T + + + L + NS VI +++ +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ + + V +LT + K LT + ALR + + R IL C + SKV
Sbjct: 121 LETNSQRDFKVVLLTEVDK---LTKDAQHALRRTMEKYMSTCRLILCCNSTSKV 171
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 133/224 (59%), Positives = 178/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL+ +CKKEGL++P + A +LA++S RNLR+A+LMCEA +VQQYPF +DQ+I E D
Sbjct: 191 DICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYPFTVDQEIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 68/174 (39%), Positives = 96/174 (55%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPA-IRSRCLCIR 115
G + +H T + + + L + NS VI +++ +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ + ++ V +LT + K LT + ALR + + R IL C + SKV
Sbjct: 121 LETNSQKDFKVVLLTEVDK---LTKDAQHALRRTMEKYMSTCRLILCCNSTSKV 171
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 134/224 (59%), Positives = 177/224 (79%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS+S++I I+SRCL +R+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL+++CKKEGL +PPE A RLA++S RNLR+A+LMCE+ +VQQYPF DQ I E D
Sbjct: 191 DICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYPFSADQDIPEMD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+IY+R+TA I+S+QSP++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 251 WEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLTELLNNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L ++
Sbjct: 311 VAQMAAFYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEDGLDDM 354
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 68/174 (39%), Positives = 95/174 (54%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP+ L +LDFH +QA LR+L++ GDFPHLL YGPSGAGKKTRIM LL+ELY
Sbjct: 1 MSLWVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPAI-RSRCLCIR 115
G + +H + A + + + L + N+ VI + ++ +
Sbjct: 61 GAGVEKLRIEHQSITAPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ T + V +LT + K LT + ALR + R IL C + SK+
Sbjct: 121 LETSTQRDFKVVLLTEVDK---LTKDAQHALRRTMEKYMATCRLILCCNSISKI 171
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 134/224 (59%), Positives = 176/224 (78%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E D
Sbjct: 191 DICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 68/174 (39%), Positives = 95/174 (54%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L +LD+H +QA LRNL++ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPA-IRSRCLCIR 115
G + +H T + + + L + NS VI +++ +
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ + + V +LT + K LT + ALR + + R IL C + SKV
Sbjct: 121 LETNSQRDFKVVLLTEVDK---LTKDAQHALRRTMEKYMSTCRLILCCNSTSKV 171
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 134/224 (59%), Positives = 176/224 (78%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct: 131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I SVL+ +C+KEGL +P A RLA++S RNLR+A+LMCEA +VQQYPF DQ+I E D
Sbjct: 191 DICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+Q+P++LLEVR RLYELL H IP ++ K LL LL NCD LK +
Sbjct: 251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
+MAA +EHR+ GSK I+H+EA+VA FMA+Y +FMED L +
Sbjct: 311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 68/174 (39%), Positives = 96/174 (55%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP++L +LD+H +QA LRNL++ GDFPHLL YGPSGAGKKTRIM +L+ELY
Sbjct: 1 MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYITTCRLIL----CANSMSQVIPA-IRSRCLCIR 115
G + +H T + + + L + NS VI +++ +
Sbjct: 61 GIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 116 IPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
+ + + V +LT + K LT + ALR + + R IL C + SKV
Sbjct: 121 LETSSQRDFKVVLLTEVDK---LTKDAQHALRRTMEKYMSTCRLILCCNSTSKV 171
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 132/223 (59%), Positives = 175/223 (78%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI IRSRCL +R+P P+ E
Sbjct: 131 VVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
E+ SVL+ +C+KEGL +PPE A ++A++S RNLR+A+LMCEA +VQQYPF DQ I E D
Sbjct: 191 EVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPDQDIPETD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W++Y+R+TA I+S+QSP++LLEVR RLYELL H I V+ K L+ LL+NCD LK++
Sbjct: 251 WEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTELLSNCDGHLKAE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN 285
+MAA +EHR+ G+K I+H+EA+VA FMA+Y +FMED L N
Sbjct: 311 VAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFMEDGLGN 353
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 73/173 (42%), Positives = 97/173 (56%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP +L KLD+H +QAN L+NL++ GDFPHLL YGPSGAGKKTRIM LL+ELY
Sbjct: 1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Query: 61 GPVIILNETDH--LTREAQQALR-RTM-EKYITTCRLILCANSMSQVIPA-IRSRCLCIR 115
G + +H +T +++ L T+ Y NS VI I++ +
Sbjct: 61 GAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ 120
Query: 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKV 167
I + E VL + + + LT + ALR + R IL C + SKV
Sbjct: 121 IQSSAQREFKVVL--LTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKV 171
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 524 (189.5 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 107/217 (49%), Positives = 144/217 (66%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE DHLTR+AQ ALRRTMEKY RLIL ANS S +I IRSR L +R+ AP+ E
Sbjct: 131 VVVINEADHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLVRVAAPSEE 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+I ++L+ K+EG PE R+A++S RNLRRA+LM EA Q D I PD
Sbjct: 191 DICTILSTSAKREGWNEAPELNKRIAKESGRNLRRALLMFEAIYAQSEKVSDDTPIPPPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ I A+ I++E+SP +LL+VR RLY+LL H IP + K L L+A D LK +
Sbjct: 251 WEALISVIAEEILAERSPARLLQVRARLYDLLTHCIPATTILKTLTFKLIAKIDDTLKPE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFM 279
I+ +A +EHRI +GSK IFH+EA+VA FM +Y ++
Sbjct: 311 VIKWSAFYEHRITQGSKVIFHLEAFVAKFMRIYESYL 347
Score = 209 (78.6 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 44/85 (51%), Positives = 57/85 (67%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+L VDK+RP +L L +H + + LR+L + GDFPHLL YGPSGAGKKTR +A LKELY
Sbjct: 1 MALLVDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTME 85
GP + + D+ R Q R +E
Sbjct: 61 GPGVEKIKIDN--RVFQTTSNRKLE 83
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 495 (179.3 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 104/221 (47%), Positives = 142/221 (64%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+++NE DHL+R+AQ ALRRTMEKY RLIL ANS + +I IRSR L +R+ AP+ +
Sbjct: 131 VVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPSED 190
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
EI +VL KKEG T+ + R+A++S RNLRRA+LM E Q + + I PD
Sbjct: 191 EICTVLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQNEKVEDNTPIPPPD 250
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
W+ I AK I+ E +P ++L+VR +LY+LL H IP + K L L+ D DLK +
Sbjct: 251 WEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPPTTILKTLTFKLVPLIDDDLKVE 310
Query: 243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMA---MYLQFME 280
I+ +A +EHRI G+K IFH+EA+VA FM MYL M+
Sbjct: 311 VIKWSAFYEHRIKMGTKVIFHLEAFVAKFMRILEMYLMGMD 351
Score = 214 (80.4 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 45/85 (52%), Positives = 58/85 (68%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
M+L VDK+RP +L L +H + + LR+L + GDFPHLL YGPSGAGKKTRI+A LKELY
Sbjct: 1 MALIVDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELY 60
Query: 61 GPVIILNETDHLTREAQQALRRTME 85
GP + + D R Q + R +E
Sbjct: 61 GPGVEKIKID--ARVFQTSSNRKLE 83
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 458 (166.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 100/223 (44%), Positives = 138/223 (61%)
Query: 57 KELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI 116
K+++ V+++N D LTR+AQ ALRRTMEKY RLIL ANS S++I IRSR L +R+
Sbjct: 125 KKIF-KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRV 183
Query: 117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA--SKVQQYPFQI 174
APT EEI+ V++ I +GL P +A DRNLR+AIL+ E +K I
Sbjct: 184 AAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLI 243
Query: 175 DQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
D Q+ PDW+ +I+ ++ EQSP ++L VR+ LY+LL H IP + K LL L
Sbjct: 244 DTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSFFL 303
Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
+ D+ L I+ AA +EHR G+K IFH+EA+VA FM +Y
Sbjct: 304 SKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
Score = 201 (75.8 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
LW+D+YRP L LD+H + + L +L +FPHLL YGPSGAGKKTR++A+L+ELYGP
Sbjct: 2 LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 373 (136.4 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 86/221 (38%), Positives = 130/221 (58%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++I+NE D L+R+AQ ALRRTMEKY + RLIL NS+S +I I+SR L +RIP+P+ +
Sbjct: 135 IVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVD 194
Query: 123 EIVSVLTNICKKEGLTIPPE-------FALRLAQQSDRNLRRAILMCEASKVQQYPFQID 175
I +L ++ +KE L F ++A+ S+RNLRR +L E +Q +
Sbjct: 195 NINHILGHVAEKESLKFSTHNDSEINHFYSKIAETSNRNLRRCLLSFETISMQNETINVR 254
Query: 176 QQI--VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
+ + DW+ IR+ A I Q+ L + R LYELL H IP ++ K LL L+
Sbjct: 255 SDVAKIALDWEAIIRNMAISIQKNQNVATLAKTRVVLYELLSHCIPARIILKTLLFDLID 314
Query: 234 --NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
+ +++L S+ I A++F+ R+ GSK IFH+E +VA M
Sbjct: 315 IFSNNNELVSELINQASIFDERLSLGSKSIFHLEGFVAKSM 355
Score = 218 (81.8 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
MSLWVDKYRP L +L +H N LR L K GDFPHLL YGPSG+GKKTRI L E++
Sbjct: 1 MSLWVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIF 60
Query: 61 GPVI 64
GP +
Sbjct: 61 GPQV 64
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 403 (146.9 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 86/213 (40%), Positives = 132/213 (61%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+I+NE + LT++AQ ALRRTMEKY RLI+ +SMS +I I+SRCL IR PAP+ E
Sbjct: 138 VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSE 197
Query: 124 IVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIVEP 181
I ++L+++ E + + + L R+AQ S+ NLR ++LM E+ + + + I++P
Sbjct: 198 ISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKP 257
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDL 239
DW I I + I+ E+S L+E R LY+LL H IP N++ K L LL ++
Sbjct: 258 DWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTN 317
Query: 240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
KS IE +++F+ R+ G+K IFH+E ++A M
Sbjct: 318 KSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350
Score = 186 (70.5 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 40/86 (46%), Positives = 54/86 (62%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
MSLWVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
Query: 60 YGPVIILNETDHLTREAQQALRRTME 85
+GP + + D R+ A R +E
Sbjct: 61 FGPGVYRLKID--VRQFVTASNRKLE 84
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 96/215 (44%), Positives = 143/215 (66%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ LRRTMEKY C+++L S+S++I ++SRC+ I +PAPT E
Sbjct: 133 VVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE-P 181
++ VL + ++E +P ++ ++S+ NLRRAILM EA +++ + ++ P
Sbjct: 193 DVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENESGVAESVVIPVP 252
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
+W+IYI++TA+LI+ +QS LL+VR RLYELL IP V+FK LLE LL C +
Sbjct: 253 EWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEHLLPKCPPQIAR 312
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276
+ + AA FEHR+ G K IFH+E +VA+FM +YL
Sbjct: 313 EVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMDIYL 347
Score = 203 (76.5 bits), Expect = 5.8e-15, P = 5.8e-15
Identities = 59/182 (32%), Positives = 94/182 (51%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLK 57
M+LWVDKYRP +L +D+H +QANHL+ L PHLLF GPSGAGKKTRI LL+
Sbjct: 1 MALWVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLR 59
Query: 58 ELYGPVIILNETDHLTREAQQALRRTME-KYITTCRLILCANSMSQVIPAIRSRCLCIRI 116
ELYG + + +T + + + +E + +++ I S + + + L +
Sbjct: 60 ELYG--VGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEM 117
Query: 117 PAPTHEEIVSV----LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKVQQYP 171
+ E S + +C+ + LT + LR + N + +L CE+ S++ + P
Sbjct: 118 AQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIE-P 176
Query: 172 FQ 173
Q
Sbjct: 177 LQ 178
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 96/215 (44%), Positives = 143/215 (66%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V++L E D LTR+AQ LRRTMEKY C+++L S+S++I ++SRC+ I +PAPT E
Sbjct: 133 VVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDE 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE-P 181
++ VL + ++E +P ++ ++S+ NLRRAILM EA +++ + ++ P
Sbjct: 193 DVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENESGVAESVVIPVP 252
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
+W+IYI++TA+LI+ +QS LL+VR RLYELL IP V+FK LLE LL C +
Sbjct: 253 EWEIYIQETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEHLLPKCPPQIAR 312
Query: 242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL 276
+ + AA FEHR+ G K IFH+E +VA+FM +YL
Sbjct: 313 EVVSEAAKFEHRLVLGQKAIFHLEGFVAAFMDIYL 347
Score = 203 (76.5 bits), Expect = 5.8e-15, P = 5.8e-15
Identities = 59/182 (32%), Positives = 94/182 (51%)
Query: 1 MSLWVDKYRPNNL---QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLK 57
M+LWVDKYRP +L +D+H +QANHL+ L PHLLF GPSGAGKKTRI LL+
Sbjct: 1 MALWVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLR 59
Query: 58 ELYGPVIILNETDHLTREAQQALRRTME-KYITTCRLILCANSMSQVIPAIRSRCLCIRI 116
ELYG + + +T + + + +E + +++ I S + + + L +
Sbjct: 60 ELYG--VGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEM 117
Query: 117 PAPTHEEIVSV----LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA-SKVQQYP 171
+ E S + +C+ + LT + LR + N + +L CE+ S++ + P
Sbjct: 118 AQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIE-P 176
Query: 172 FQ 173
Q
Sbjct: 177 LQ 178
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 259 (96.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 67/198 (33%), Positives = 104/198 (52%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+ + + + L+ AQ LRRT+E YI R+IL +S++I ++SRC+CIR+P P+ E
Sbjct: 128 IFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPSEE 187
Query: 123 EIVSVLTNICKKEGLTIPP----EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQI 178
EI SVL NICK+E ++ P E+ L RNLR+ I+ E S V + Q +
Sbjct: 188 EIYSVLQNICKQENVS-PSFSTYEYFQTLINTHGRNLRKCIMALEMS-VYANSSKPHQSL 245
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF----KYLLEGLLAN 234
YI + + + K+ E T++ L+ IPVN +F KYLL G N
Sbjct: 246 SVA--ASYINELCDFVFINPTQIKMKECVTKIQSLITCQIPVNFIFETTIKYLLRG---N 300
Query: 235 CDSDLKSKSIEMAAMFEH 252
D+ LK +++ + F +
Sbjct: 301 YDAKLKYYFLKLCSHFSY 318
Score = 148 (57.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KY P ++ +L H LR L + D PH++FYG G GK TRI L+KE++
Sbjct: 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKD 60
Query: 63 VIILNETDHLT 73
I+ + +T
Sbjct: 61 EKIIRRPECIT 71
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 259 (96.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 67/198 (33%), Positives = 104/198 (52%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+ + + + L+ AQ LRRT+E YI R+IL +S++I ++SRC+CIR+P P+ E
Sbjct: 128 IFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPSEE 187
Query: 123 EIVSVLTNICKKEGLTIPP----EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQI 178
EI SVL NICK+E ++ P E+ L RNLR+ I+ E S V + Q +
Sbjct: 188 EIYSVLQNICKQENVS-PSFSTYEYFQTLINTHGRNLRKCIMALEMS-VYANSSKPHQSL 245
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLF----KYLLEGLLAN 234
YI + + + K+ E T++ L+ IPVN +F KYLL G N
Sbjct: 246 SVA--ASYINELCDFVFINPTQIKMKECVTKIQSLITCQIPVNFIFETTIKYLLRG---N 300
Query: 235 CDSDLKSKSIEMAAMFEH 252
D+ LK +++ + F +
Sbjct: 301 YDAKLKYYFLKLCSHFSY 318
Score = 148 (57.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
+W++KY P ++ +L H LR L + D PH++FYG G GK TRI L+KE++
Sbjct: 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKD 60
Query: 63 VIILNETDHLT 73
I+ + +T
Sbjct: 61 EKIIRRPECIT 71
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 180 (68.4 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 57/174 (32%), Positives = 85/174 (48%)
Query: 43 PSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102
PS GK + +A K +IIL+E D +T AQ ALRR MEKY R + AN +
Sbjct: 144 PSATGKSS--LASFK-----LIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHK 196
Query: 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTN-ICKKEGLTIPPEFALRLAQQSDRNLRRAILM 161
+ PA+ SRC R +P E+ + VL + + +KE + I PE L S ++RRA+ +
Sbjct: 197 LSPALLSRCTRFRF-SPLKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNV 255
Query: 162 CEASKVQQYPFQI-----DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRL 210
+A P I DQ + EP+ +T I+ P + ++ T L
Sbjct: 256 LQACHASSKPLPIKNAPQDQAVPEPE--TITNETIYDCIAAPHPADIQQIVTTL 307
Score = 135 (52.6 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
WV+KYRPN L + H + ++ PHLL YGP G GK + I+AL + +YG
Sbjct: 47 WVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYG 104
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 170 (64.9 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 54/218 (24%), Positives = 113/218 (51%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R +
Sbjct: 115 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQN 174
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+++ L ++ ++E + I P+ + S ++RR++ + +++ + Y ++ +
Sbjct: 175 QMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMA-YGKVTEETVYTCT 233
Query: 183 WKIYIRDTAKLI---ISEQ---SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD 236
D A ++ +++ + ++LE++T L L +H I V +LL +
Sbjct: 234 GHPLRSDIANILDWALNKDFTTAYNQILELKT-LKGLALHDILTEV---HLLIHRVDFPP 289
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
S I++A + E+R+ G+ + + VA+F A+
Sbjct: 290 SIRMGLLIKLADI-EYRLASGTSEKIQLSSMVAAFQAV 326
Score = 136 (52.9 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
WV+KYRP L L H + ++ + E PHLLFYGP G GK + I+A ++LY
Sbjct: 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLY 72
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 171 (65.3 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 54/216 (25%), Positives = 110/216 (50%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 120 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 179
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+V L ++ ++E + I + L S ++RRA+ + +++ + + ++ +
Sbjct: 180 LMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMA-FGKVTEETVYTCT 238
Query: 183 WKIYIRDTAKLI---ISEQ---SPKKLLEVRTRLYELLVHSIPVNV-LFKYLLEGLLANC 235
D A ++ +++ + K ++E++T L L +H I V LF + ++
Sbjct: 239 GHPLKTDIANILDWMLNQDFTTAYKNIMELKT-LKGLALHDILTEVHLFVHRVD-----F 292
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
S ++ + A E+R+ G+ + + +A+F
Sbjct: 293 PSSVRMHLLTKMADIEYRLSVGTSEKIQLSSLIAAF 328
Score = 133 (51.9 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 81 EFGSMVLELNASD 93
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 170 (64.9 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 54/216 (25%), Positives = 110/216 (50%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 120 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 179
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+V L ++ ++E + I + L S ++RRA+ + +++ + + ++ +
Sbjct: 180 LMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMA-FGKVTEETVYTCT 238
Query: 183 WKIYIRDTAKLI---ISEQ---SPKKLLEVRTRLYELLVHSIPVNV-LFKYLLEGLLANC 235
D A ++ +++ + K ++E++T L L +H I V LF + ++
Sbjct: 239 GHPLKTDIANILDWMLNQDFTTAYKNIMELKT-LKGLALHDILTEVHLFVHRVD-----F 292
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
S ++ + A E+R+ G+ + + +A+F
Sbjct: 293 PSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLIAAF 328
Score = 133 (51.9 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 81 EFGSMVLELNASD 93
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 176 (67.0 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 37/97 (38%), Positives = 57/97 (58%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N +++I I+SRC +R T +
Sbjct: 122 IIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQ 181
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+++ L NICK E + + L ++ ++R+A+
Sbjct: 182 QVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAV 218
Score = 117 (46.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + + + L+ + KEG+ PHL+ G G GK T I+ L L GP
Sbjct: 23 WVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA 82
Query: 63 ----VIILNETD 70
V+ LN +D
Sbjct: 83 YKEGVLELNASD 94
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 167 (63.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +TREAQ A+RR +E + T R IL N +S++IP + SRC R + E
Sbjct: 121 IIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAE 180
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
V L IC EG + + ++ + S+ +LRRA+
Sbjct: 181 IQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAV 217
Score = 128 (50.1 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
W +KYRP L + + + L+ L+ D PHLLFYGP G GK + +A ++L+
Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLF 73
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 167 (63.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +TREAQ A+RR +E + T R IL N +S++IP + SRC R + E
Sbjct: 121 IIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAE 180
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
V L IC EG + + ++ + S+ +LRRA+
Sbjct: 181 IQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAV 217
Score = 128 (50.1 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
W +KYRP L + + + L+ L+ D PHLLFYGP G GK + +A ++L+
Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLF 73
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 161 (61.7 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 52/216 (24%), Positives = 109/216 (50%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 121 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 180
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+V L ++ ++E + I + L S ++RRA+ + +++ + + ++ +
Sbjct: 181 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMA-FGKVTEETVYTCT 239
Query: 183 WKIYIRDTAKLI---ISEQ---SPKKLLEVRTRLYELLVHSIPVNV-LFKYLLEGLLANC 235
D A ++ +++ + + + E++T L L +H I + LF + ++
Sbjct: 240 GHPLKSDIANILDWMLNQDFTTAYRNITELKT-LKGLALHDILTEIHLFVHRVD-----F 293
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
S ++ + A E+R+ G+ + + +A+F
Sbjct: 294 PSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAF 329
Score = 134 (52.2 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 81
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 82 EFGSMVLELNASD 94
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 150 (57.9 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQ +LRR +EK+ CR + AN ++ PA+ SRC R
Sbjct: 133 LIILDEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDIS 192
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166
I L + KE + I PE L + S+ ++RRA+ + ++ K
Sbjct: 193 AIKDRLNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCK 236
Score = 148 (57.2 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
V+KYRP++L+++ + + +R ++ G PHLLFYGPSG GK + I+AL KE+YG
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYG 82
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 159 (61.0 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 35/105 (33%), Positives = 63/105 (60%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 120 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 179
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV 167
+V L ++ ++E + I + L S ++RRA+ + +++ +
Sbjct: 180 LMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNM 224
Score = 134 (52.2 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 81 EFGSMVLELNASD 93
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 159 (61.0 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 51/216 (23%), Positives = 109/216 (50%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 120 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 179
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+V L ++ +E + + + L S ++RRA+ + +++ + + ++ +
Sbjct: 180 LMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMA-FGKVTEETVYTCT 238
Query: 183 WKIYIRDTAKLI---ISEQ---SPKKLLEVRTRLYELLVHSIPVNV-LFKYLLEGLLANC 235
D A ++ +++ + + ++E++T L L +H I + LF + ++
Sbjct: 239 GHPLKSDIANILDWMLNQDFTTAYRNIMELKT-LKGLALHDILTEIHLFVHRVD-----F 292
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
S ++ + A E+R+ G+ + + +A+F
Sbjct: 293 PSSVRVHLLTKMADIEYRLSVGTNEKIQLSSLIAAF 328
Score = 134 (52.2 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 81 EFGSMVLELNASD 93
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 166 (63.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 39/97 (40%), Positives = 56/97 (57%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQ ALRRTMEK + R L N +S++I I SRC R A +
Sbjct: 137 IIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGED 196
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+++ L IC+ EG+ I + + + S +LRRAI
Sbjct: 197 KVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAI 233
Score = 126 (49.4 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
WV+KYRP N+ + + LR ++ GD P++L YGP G GK + I+A ++++G
Sbjct: 32 WVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFG 89
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 149 (57.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 63 ----VIILNETD 70
V+ LN +D
Sbjct: 75 YSNMVLELNASD 86
Score = 146 (56.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTH 121
+IIL+E D +T AQ ALRR +E+Y R + AN ++ PA+ SRC R P P
Sbjct: 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLP-Q 171
Query: 122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK 166
E I + N+ E L + P L + S+ ++RR + + ++ K
Sbjct: 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 156 (60.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 52/200 (26%), Positives = 89/200 (44%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T++AQ ALRRTME Y R L N M+++I + SRC R +E
Sbjct: 126 IIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNE 185
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVE 180
+V L I + +++ P L + S ++R+AI L A+ Q P I VE
Sbjct: 186 NMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISS--VE 243
Query: 181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSD 238
+ + ++ K + + T ++ ++ L + LL S
Sbjct: 244 ELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSP 303
Query: 239 LKSKSIEMAAMFEHRIHKGS 258
+K K + + R++ G+
Sbjct: 304 VKYKIFMKLSEVDKRLNDGA 323
Score = 137 (53.3 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+ YRP L ++ L+ L + PH+LFYG G GK + I+AL +EL+GP
Sbjct: 21 WVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQ 80
Query: 64 IILNETDHLTREAQQALRRTMEK 86
++ + L ++ + EK
Sbjct: 81 LMKSRVLELNASDERGISIIREK 103
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 159 (61.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 35/105 (33%), Positives = 63/105 (60%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 135 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 194
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV 167
+V L ++ ++E + I + L S ++RRA+ + +++ +
Sbjct: 195 LMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNM 239
Score = 134 (52.2 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 36 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 95
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 96 EFGSMVLELNASD 108
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 153 (58.9 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 55/215 (25%), Positives = 99/215 (46%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T +AQ ALRR +EKY R + N +S++IPA++SRC R + +
Sbjct: 112 LIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQD 171
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+++ L I + E + I + L + ++R+ + + +++ + D +
Sbjct: 172 QMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVG 231
Query: 183 WKIY--IRDTAKLIISEQSPKKLLE-VRTRLYE--LLVHSIPVNV-LFKYLLEGLLANCD 236
+ + I K ++S S + + V + Y L + I + LF LE
Sbjct: 232 YPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLE-----LP 286
Query: 237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
+ +K I A E R+ KG + A VA+F
Sbjct: 287 MSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAF 321
Score = 139 (54.0 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
WV+KYRP+ L L H + + + + PHLLFYGP G GK + I+A ++LY P
Sbjct: 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSP 71
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 155 (59.6 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 34/105 (32%), Positives = 62/105 (59%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 120 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 179
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV 167
+V L ++ +E + + + L S ++RRA+ + +++ +
Sbjct: 180 LMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNM 224
Score = 134 (52.2 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L L H + ++ + E PHLL YGP G GK + I+A K+LY
Sbjct: 21 WVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDK 80
Query: 61 --GPVII-LNETD 70
G +++ LN +D
Sbjct: 81 EFGSMVLELNASD 93
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 145 (56.1 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV KYRP + + + + L+ L G+ PHLLFYGP G GK + I+A+ ++YGP
Sbjct: 12 WVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPE 71
Query: 64 II 65
++
Sbjct: 72 LM 73
Score = 134 (52.2 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 48/211 (22%), Positives = 93/211 (44%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T +AQ ALRRT+E T R L N +S++I + SRC R
Sbjct: 119 LIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTV 178
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+ L I ++EG+ + S+ ++R+AI + S + + +I + ++
Sbjct: 179 ATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQ-SAFRFFANKISEDVIYNI 237
Query: 183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
K ++ +++ + ++ PV+ + L + +L D + K
Sbjct: 238 AGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQK 297
Query: 243 S-IEMA-AMFEHRIHKGSKP---IFHIEAYV 268
S I M + + GS+ +F + +Y+
Sbjct: 298 SHITMKIGNVDRNLIDGSEEFLQLFDLSSYI 328
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 158 (60.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 36/97 (37%), Positives = 56/97 (57%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R E
Sbjct: 167 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDE 226
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+I+ LT + +KE L + + + + ++R+A+
Sbjct: 227 QIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQAL 263
Score = 119 (46.9 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 68 WVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 127
Query: 64 I 64
+
Sbjct: 128 M 128
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 155 (59.6 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R T
Sbjct: 132 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 191
Query: 123 EIVSVLTNICKKE 135
+++S L N+ +KE
Sbjct: 192 QVLSRLMNVIEKE 204
Score = 118 (46.6 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 33 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 92
Query: 64 I 64
+
Sbjct: 93 L 93
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 153 (58.9 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R T
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 196
Query: 123 EIVSVLTNICKKE 135
+I++ L N+ +KE
Sbjct: 197 QILTRLMNVIEKE 209
Score = 118 (46.6 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 97
Query: 64 I 64
+
Sbjct: 98 L 98
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 152 (58.6 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R T
Sbjct: 132 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 191
Query: 123 EIVSVLTNICKKE 135
++++ L N+ +KE
Sbjct: 192 QVLTRLMNVIEKE 204
Score = 118 (46.6 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 33 WVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 92
Query: 64 I 64
+
Sbjct: 93 L 93
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 150 (57.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 35/97 (36%), Positives = 55/97 (56%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R T
Sbjct: 142 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDS 201
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+I++ L I +KE + + + + ++R+A+
Sbjct: 202 QILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQAL 238
Score = 117 (46.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L KEG+ P+++ GP G GK T I+ L + L GP
Sbjct: 43 WVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA 102
Query: 64 I 64
+
Sbjct: 103 L 103
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 148 (57.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 34/103 (33%), Positives = 59/103 (57%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V+IL+E D +T AQQALRRT+E Y + R L N+ +++I I+SRC +R + +
Sbjct: 116 VVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQ 175
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I+ L + E + PE + +D ++R+A+ +A+
Sbjct: 176 QILGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT 218
Score = 117 (46.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP+ + + + + L+ + ++G+ P+L+ GP G GK T I+AL EL G
Sbjct: 17 WVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTN 76
Query: 63 ----VIILNETD 70
V+ LN +D
Sbjct: 77 YKEAVLELNASD 88
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 152 (58.6 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 47/197 (23%), Positives = 95/197 (48%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQQALRRTME Y + R N +++I ++SRC +R + E
Sbjct: 110 IVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDE 169
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVE 180
+++ L I K E + + + ++ ++R+AI +++ D +IV+
Sbjct: 170 DVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVD 229
Query: 181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLK 240
+ ++ K++++ + +RT L++ SI + V + + LA ++
Sbjct: 230 SPHPLIVK---KMLLASNLEDSIQILRTDLWKKGYSSIDI-VTTSFRVTKNLAQVKESVR 285
Query: 241 SKSIEMAAMFEHRIHKG 257
+ I+ + RI +G
Sbjct: 286 LEMIKEIGLTHMRILEG 302
Score = 111 (44.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
WV+KYRP L + + + + L+ + K+G+ PH++ G G GK T + L EL G
Sbjct: 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 147 (56.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R T
Sbjct: 135 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDM 194
Query: 123 EIVSVLTNICKKE 135
+I++ L ++ +KE
Sbjct: 195 QILARLLSVIEKE 207
Score = 118 (46.6 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L +EG+ P+++ GP G GK T I+ L + L GP
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 95
Query: 64 I 64
+
Sbjct: 96 L 96
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 138 (53.6 bits), Expect = 9.9e-16, Sum P(2) = 9.9e-16
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R +
Sbjct: 135 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDA 194
Query: 123 EIVSVLTNICKKE 135
++++ L + ++E
Sbjct: 195 QVLARLLTVLEQE 207
Score = 121 (47.7 bits), Expect = 9.9e-16, Sum P(2) = 9.9e-16
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L KEG+ P+++ GP G GK T I+ L + L GP
Sbjct: 36 WVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA 95
Query: 64 I 64
+
Sbjct: 96 L 96
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 153 (58.9 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRT+E Y T R N S++I ++SRC +R + E
Sbjct: 111 IIILDEADSMTPGAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDE 170
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
E+++ L I K E + E L ++ ++R+AI
Sbjct: 171 EVLARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAI 207
Score = 103 (41.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
WV+KYRP L+ + + + L+ ++++G+ P+++ G G GK T I L EL G
Sbjct: 11 WVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLG 68
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 138 (53.6 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R +
Sbjct: 147 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDA 206
Query: 123 EIVSVLTNICKKE 135
++++ L + ++E
Sbjct: 207 QVLARLLTVLEQE 219
Score = 121 (47.7 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L ++ + + L KEG+ P+++ GP G GK T I+ L + L GP
Sbjct: 48 WVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPA 107
Query: 64 I 64
+
Sbjct: 108 L 108
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 142 (55.0 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 54/204 (26%), Positives = 95/204 (46%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N ++I I+SRC +R +
Sbjct: 111 IIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPV 170
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV--- 179
++++ + + K E + + + ++R+A+ +A+ V Y + ++
Sbjct: 171 QLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQAT-VNAYELVNKENVLKVC 229
Query: 180 -EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYEL--LVHSIP--VNVLFKYLLEGLLA- 233
EP + I+ ++ + +K E ++E L S V+ LF+ + L+
Sbjct: 230 DEPHPDLMIK-----MLHYCTDRKFFEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSK 284
Query: 234 NCDSDLKSKSIEMAAMFEHRIHKG 257
N L+ + I AM RI +G
Sbjct: 285 NVSEQLRMEYIRQIAMCHMRIVQG 308
Score = 108 (43.1 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + L+ + EG+ P+++ GP G GK T + AL +EL G
Sbjct: 12 WVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDK 71
Query: 63 ----VIILNETD 70
V+ LN +D
Sbjct: 72 VKEAVLELNASD 83
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 153 (58.9 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRRTME Y T R L N+ ++I I+SRC +R T
Sbjct: 78 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 137
Query: 123 EIVSVLTNICKKE 135
+I++ L N+ +KE
Sbjct: 138 QILARLLNVIEKE 150
Score = 84 (34.6 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVI 64
L+ +EG+ P+++ GP G GK T I+ L + L GP +
Sbjct: 1 LQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 39
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 142 (55.0 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPA 99
Query: 64 I 64
+
Sbjct: 100 L 100
Score = 99 (39.9 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC--LCIRIPAPTH 121
+IL+E D +T A +ALR+TMEK T R L N +S++I + SR C P
Sbjct: 143 VILDEADSMT-SAARALRQTMEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCF---TPLS 198
Query: 122 EEIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
++I L I +KE + + + L S+ +LR+AI + +++
Sbjct: 199 DKIQQKRLLGIAEKENVKLGDD----LVTISEGDLRKAIPLLQSA 239
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 146 (56.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQQALRRTME Y +T R L N+ ++I I+SRC +R +
Sbjct: 117 IVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDA 176
Query: 123 EIVSVLTNICKKEGL 137
++++ L + K E L
Sbjct: 177 QVLAKLIEVAKWEKL 191
Score = 90 (36.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
W++KYRP +++ + L +G+ P+++ GP G GK T I L + L G
Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 132 (51.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQQALRR ME Y T R N +++I I+SRC +R +
Sbjct: 121 IIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDS 180
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I++ L + + E + + + ++ ++R+A+ +A+
Sbjct: 181 QILTRLREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQAT 223
Score = 107 (42.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG 61
WV+KYRP ++ + + + + L ++ K+G+ P+++ GP G GK + I+ L + L G
Sbjct: 22 WVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 174 (66.3 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 45/159 (28%), Positives = 75/159 (47%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP +L + L +K G+ PH+LFYGP G GK + I+AL KELYGP
Sbjct: 26 WVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPN 85
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+ + L ++ + EK RL + +N + + P P ++
Sbjct: 86 LYKSRVLELNASDERGISIVREKIKNFARLTI-SNPTKEDLQ---------NYPCPPYKI 135
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162
I+ + + + +T + ALR ++ + R +L+C
Sbjct: 136 II-----LDEADSMTNDAQSALRRTMENYAGITRFVLIC 169
Score = 138 (53.6 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 44/139 (31%), Positives = 68/139 (48%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T +AQ ALRRTME Y R +L N ++++I I SRC R +E
Sbjct: 135 IIILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNE 194
Query: 123 EIVSVLTNICKKEGLTIPPE-----FALRLAQQSDRNLRRAILMCEASKVQQYPFQID-- 175
L I ++E L E L + S +LR+AI +++ F I+
Sbjct: 195 NAQLRLKYIGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHH 254
Query: 176 QQIVEPDWKIYIRDTAKLI 194
Q ++ IR+TA ++
Sbjct: 255 QSLITIQ---SIRETAGIL 270
Score = 37 (18.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 175 DQQIVEPDWKIYIRDTAKLIISEQSPKKLLEV-RTRLYELLVHSIPVNVLFKYLLEGLLA 233
+ Q+++ KI D K I QS KL E ++ L+ + L + +LA
Sbjct: 217 EHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSIRETAGILPDDILA 276
Query: 234 NCDSDLKSKS 243
+KSK+
Sbjct: 277 ELIQFIKSKT 286
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 176 (67.0 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 46/159 (28%), Positives = 74/159 (46%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
++ + L ++ + EK RL + S + P P ++
Sbjct: 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLE----------NYPCPPYKI 136
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162
I+ + + + +T + ALR ++ + R L+C
Sbjct: 137 II-----LDEADSMTADAQSALRRTMETYSGVTRFCLIC 170
Score = 148 (57.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T +AQ ALRRTME Y R L N ++++I + SRC R A
Sbjct: 136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDAS 195
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
+ L I ++E + R+ S +LRR I L+ ASK QY
Sbjct: 196 NAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 56/190 (29%), Positives = 92/190 (48%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 144 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFK-PLSD 202
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
+I L ++ +KE + I E L + SD +LR+AI +++ +I ++ V
Sbjct: 203 KIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTE 262
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
+ R+T ++S S ++ T L+ V L L + ++ + D K
Sbjct: 263 IAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQ 322
Query: 242 KSIEMAAMFE 251
KSI + + E
Sbjct: 323 KSIIVEKLAE 332
Score = 161 (61.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 66/270 (24%), Positives = 121/270 (44%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP N+ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 97
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS-QVIPAIRSRCLCIRIPAPTHE 122
+ L ++ ++ EK +L + +V P + + I A +
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFK---IVILDEADSMT 154
Query: 123 EIV-SVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ-IVE 180
+ L +KE T F L + R + C + + +I QQ +++
Sbjct: 155 SAAQAALRRTMEKESKTT--RFCL-ICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLD 211
Query: 181 PDWKIYIRDTAKLI-----ISEQSPKKL---LEVRTRLY---ELLVHSIP--VNVLFKYL 227
K ++ T++ + +S+ +K L+ TRL E+ ++ V+ +
Sbjct: 212 VSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRET 271
Query: 228 LEGLLANCDSDLKSKSIEMAAMFEHRIHKG 257
++GLL+ C S K +E A ++ I++G
Sbjct: 272 IDGLLSACSSGSFEK-LETVA--KNLINEG 298
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 169 (64.5 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 56/190 (29%), Positives = 92/190 (48%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 144 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFK-PLSD 202
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
+I L ++ +KE + I E L + SD +LR+AI +++ +I ++ V
Sbjct: 203 KIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTE 262
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKS 241
+ R+T ++S S ++ T L+ V L L + ++ + D K
Sbjct: 263 IAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQ 322
Query: 242 KSIEMAAMFE 251
KSI + + E
Sbjct: 323 KSIIVEKLAE 332
Score = 161 (61.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 66/270 (24%), Positives = 121/270 (44%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP N+ ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 38 WVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 97
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS-QVIPAIRSRCLCIRIPAPTHE 122
+ L ++ ++ EK +L + +V P + + I A +
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFK---IVILDEADSMT 154
Query: 123 EIV-SVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ-IVE 180
+ L +KE T F L + R + C + + +I QQ +++
Sbjct: 155 SAAQAALRRTMEKESKTT--RFCL-ICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLD 211
Query: 181 PDWKIYIRDTAKLI-----ISEQSPKKL---LEVRTRLY---ELLVHSIP--VNVLFKYL 227
K ++ T++ + +S+ +K L+ TRL E+ ++ V+ +
Sbjct: 212 VSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRET 271
Query: 228 LEGLLANCDSDLKSKSIEMAAMFEHRIHKG 257
++GLL+ C S K +E A ++ I++G
Sbjct: 272 IDGLLSACSSGSFEK-LETVA--KNLINEG 298
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 161 (61.7 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 52/216 (24%), Positives = 109/216 (50%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EK+ R L N +S++IPA++SRC R T E
Sbjct: 36 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 95
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+V L ++ ++E + I + L S ++RRA+ + +++ + + ++ +
Sbjct: 96 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMA-FGKVTEETVYTCT 154
Query: 183 WKIYIRDTAKLI---ISEQ---SPKKLLEVRTRLYELLVHSIPVNV-LFKYLLEGLLANC 235
D A ++ +++ + + + E++T L L +H I + LF + ++
Sbjct: 155 GHPLKSDIANILDWMLNQDFTTAYRNITELKT-LKGLALHDILTEIHLFVHRVD-----F 208
Query: 236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
S ++ + A E+R+ G+ + + +A+F
Sbjct: 209 PSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAF 244
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 166 (63.5 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 46/154 (29%), Positives = 84/154 (54%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T++AQ ALRR +EKY R + N ++ ++PAI+SRC R AP +
Sbjct: 139 LVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRF-APLDQ 197
Query: 123 E-IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ---IDQQI 178
+ IV L I + E L + P+ L S ++R I +++ + + Q I
Sbjct: 198 KLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCI 257
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYE 212
+P K +++ K ++++ S K + ++T+L+E
Sbjct: 258 GQPTPK-EMKEVVKTLLNDPSKKCMNTIQTKLFE 290
Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 55/238 (23%), Positives = 105/238 (44%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP+ L +L H + L ++ PHLLFYGP G GK T ++A +++Y P
Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPT 90
Query: 64 IILNETDHLTREAQQAL---RRTMEKYITTCRL-ILCANSMSQVIPAIRSRCLCIRIPAP 119
+ + L ++ + R T+ + T L +S + +P + A
Sbjct: 91 KMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPF--KLVILDEADAM 148
Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQQI 178
T ++ + L + +K T F + N +I+ S+ ++ F +DQ++
Sbjct: 149 T-KDAQNALRRVIEK--YTDNVRFCIIC------NYLASIVPAIQSRCTRFRFAPLDQKL 199
Query: 179 VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVL-FKYLLEGLLANC 235
+ P + YI +T +L ++ LL V +++++ + F + E + C
Sbjct: 200 IVPRLE-YIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQC 256
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 159 (61.0 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R ++
Sbjct: 141 IIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLAND 200
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ-IVE 180
+ IC+KE L E L + S+ +LR+AI ++ +I +Q I+E
Sbjct: 201 VQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIE 259
Score = 149 (57.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +ELYGP
Sbjct: 35 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPD 94
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 95 LYRQRVLELNASDERGIQVVREK 117
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 157 (60.3 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 40/104 (38%), Positives = 59/104 (56%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 204
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I KKE + I E L + S+ +LR+AI +++
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 157 (60.3 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 40/104 (38%), Positives = 59/104 (56%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 204
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I KKE + I E L + S+ +LR+AI +++
Sbjct: 205 KIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSA 248
Score = 144 (55.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 154 (59.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 35/103 (33%), Positives = 60/103 (58%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTH 121
+IIL+E D +T AQ ALRR +EKY R + N ++++ PAI+SRC R P P
Sbjct: 123 MIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPP- 181
Query: 122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA 164
+EI + ++ + E I P+ + + + S ++R+A+ + +A
Sbjct: 182 KEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQA 224
Score = 147 (56.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 34/112 (30%), Positives = 58/112 (51%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL+ + H + L + PH+LFYGP G GK + I+A +++YGP
Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN 84
Query: 63 ----VIILNETDH----LTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
++ LN +D RE + T + + +T ++I+ + + + A
Sbjct: 85 YRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAA 136
Score = 38 (18.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 244 IEMAAMFEHRIHKGSKPIFHIEAYVAS 270
++ A EHR+ G + A +AS
Sbjct: 304 LDQLATIEHRMSFGCSEKIQLSAMIAS 330
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 156 (60.0 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 35/97 (36%), Positives = 56/97 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + + ++ +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDK 74
Query: 63 ----VIILNETD----HLTREAQQALRRTMEKYITTC 91
V+ LN +D ++ R+ + + Y TTC
Sbjct: 75 RSSFVLELNASDDRGINVIRDQIKTFAESKNHY-TTC 110
Score = 151 (58.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 42/135 (31%), Positives = 67/135 (49%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E DH+T AQ A+RR ME Y R L N ++++ PAI+SRC R AP +
Sbjct: 117 LIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRF-APLKK 175
Query: 123 EIV-SVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC-EASKVQQYPFQIDQQIVE 180
E + + +I K E + + L + ++RR IL C + + ID+ ++
Sbjct: 176 EYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRR-ILNCLQVVSLSHKNLVIDENVIL 234
Query: 181 PDWKIYIRDTAKLII 195
I + K I+
Sbjct: 235 STLDIPLPSETKKIL 249
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 156 (60.0 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 35/97 (36%), Positives = 56/97 (57%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRPN L + H + + ++ +++G+ PHLL +GP G GK + I+A+ KELYG
Sbjct: 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDK 74
Query: 63 ----VIILNETD----HLTREAQQALRRTMEKYITTC 91
V+ LN +D ++ R+ + + Y TTC
Sbjct: 75 RSSFVLELNASDDRGINVIRDQIKTFAESKNHY-TTC 110
Score = 151 (58.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 42/135 (31%), Positives = 67/135 (49%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E DH+T AQ A+RR ME Y R L N ++++ PAI+SRC R AP +
Sbjct: 117 LIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRF-APLKK 175
Query: 123 EIV-SVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC-EASKVQQYPFQIDQQIVE 180
E + + +I K E + + L + ++RR IL C + + ID+ ++
Sbjct: 176 EYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRR-ILNCLQVVSLSHKNLVIDENVIL 234
Query: 181 PDWKIYIRDTAKLII 195
I + K I+
Sbjct: 235 STLDIPLPSETKKIL 249
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 39/117 (33%), Positives = 62/117 (52%)
Query: 49 KTRIMALLKELYG--P----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102
+ RI + KE+ P +IIL+E D +T AQQ+LRR ME Y T R L N +
Sbjct: 97 RDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEK 156
Query: 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+I A++SRC IR + ++++ + IC E + + L +D +LR+A+
Sbjct: 157 IIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAV 213
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W++KYRP L ++ + N L++++ G+ P+LL G G GK T I+ L E+
Sbjct: 15 IDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEML 74
Query: 61 G-----PVIILNETD 70
G V+ LN +D
Sbjct: 75 GNQAKKAVLELNASD 89
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 39/117 (33%), Positives = 62/117 (52%)
Query: 49 KTRIMALLKELYG--P----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102
+ RI + KE+ P +IIL+E D +T AQQ+LRR ME Y T R L N +
Sbjct: 97 RDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEK 156
Query: 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI 159
+I A++SRC IR + ++++ + IC E + + L +D +LR+A+
Sbjct: 157 IIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAV 213
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
+ +W++KYRP L ++ + N L++++ G+ P+LL G G GK T I+ L E+
Sbjct: 15 IDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEML 74
Query: 61 G-----PVIILNETD 70
G V+ LN +D
Sbjct: 75 GNQAKKAVLELNASD 89
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 57/233 (24%), Positives = 110/233 (47%)
Query: 49 KTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
K +I + KE+ +++L+E D +T +AQ ALRR +E Y R IL N + ++
Sbjct: 99 KNKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDP 158
Query: 107 IRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM---- 161
I SRC C R + P + + +L IC+ E + I + ++ + ++ +LRRA+ +
Sbjct: 159 IFSRCSCYRFQSIPINIKKEKLLY-ICQNENIDIVDDALEKIIETTEGDLRRAVSILQLC 217
Query: 162 -CEASKVQQYPFQIDQQIVEPDWKIY-IRDTAKLIISEQSPKKLLEVRTRLYELLVHSIP 219
C +K+ +D + D +Y I D K+ K L V + +++
Sbjct: 218 SCINTKITLNSV-LDVSGLPSDNIVYKIIDACKM-------KDLKLVEKTVQDIIEDGFD 269
Query: 220 VNVLFKYLLEGLLANCDSD--LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVAS 270
V +FK + N + + LK + + + ++R+H G+ + ++ +S
Sbjct: 270 VAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHDYRLHCGATQYIQLLSFASS 322
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L + L+ +++ + PHL+F+GP G GK + I AL EL+G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKE 65
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSM----SQVIPA 106
I L + + EK R+ + N + +V+P+
Sbjct: 66 NISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPS 112
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 57/233 (24%), Positives = 110/233 (47%)
Query: 49 KTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA 106
K +I + KE+ +++L+E D +T +AQ ALRR +E Y R IL N + ++
Sbjct: 99 KNKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDP 158
Query: 107 IRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM---- 161
I SRC C R + P + + +L IC+ E + I + ++ + ++ +LRRA+ +
Sbjct: 159 IFSRCSCYRFQSIPINIKKEKLLY-ICQNENIDIVDDALEKIIETTEGDLRRAVSILQLC 217
Query: 162 -CEASKVQQYPFQIDQQIVEPDWKIY-IRDTAKLIISEQSPKKLLEVRTRLYELLVHSIP 219
C +K+ +D + D +Y I D K+ K L V + +++
Sbjct: 218 SCINTKITLNSV-LDVSGLPSDNIVYKIIDACKM-------KDLKLVEKTVQDIIEDGFD 269
Query: 220 VNVLFKYLLEGLLANCDSD--LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVAS 270
V +FK + N + + LK + + + ++R+H G+ + ++ +S
Sbjct: 270 VAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHDYRLHCGATQYIQLLSFASS 322
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L + L+ +++ + PHL+F+GP G GK + I AL EL+G
Sbjct: 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKE 65
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSM----SQVIPA 106
I L + + EK R+ + N + +V+P+
Sbjct: 66 NISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPS 112
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 204
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I KE + I E L Q S+ +LR+AI +++
Sbjct: 205 KIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSA 248
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 41/113 (36%), Positives = 59/113 (52%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL L H + L+ PHLLFYGP G GK + I A+ ++LYG
Sbjct: 26 WVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGDN 85
Query: 63 ----VIILNETDH----LTREAQQALRRTMEKYITTC--RLILC--ANSMSQV 103
V+ LN +D + RE + +M + TT +LI+ A+SM+ +
Sbjct: 86 YSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNI 138
Score = 140 (54.3 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 34/118 (28%), Positives = 62/118 (52%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI-PAPTH 121
+IIL+E D +T AQ ALRR +EKY T R + N + ++IPA++SRC R P PT
Sbjct: 126 LIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTP 185
Query: 122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIV 179
+ L I +KE + + + + + ++R+ + + ++ + I ++ +
Sbjct: 186 PTEIR-LKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAI 242
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 144 (55.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
Score = 118 (46.6 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 204
Query: 123 EI 124
+I
Sbjct: 205 KI 206
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 151 (58.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 39/104 (37%), Positives = 59/104 (56%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 204
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I +KE + I E L + S+ +LR+AI +++
Sbjct: 205 KIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSA 248
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 150 (57.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 39/104 (37%), Positives = 59/104 (56%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 204
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I +KE + I E L + S+ +LR+AI +++
Sbjct: 205 KIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSA 248
Score = 148 (57.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + LR L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 100 LFRLRVLELNASDERGIQVVREK 122
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 149 (57.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 39/104 (37%), Positives = 58/104 (55%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 148 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 206
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I KE + I E L + S+ +LR+AI +++
Sbjct: 207 KIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSA 250
Score = 147 (56.8 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 32/100 (32%), Positives = 54/100 (54%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV 103
+ L ++ ++ EK +L + + S S++
Sbjct: 100 LFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSEI 138
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 148 (57.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 54/225 (24%), Positives = 116/225 (51%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+++L+E D +T++AQ ALRR +EKY + R L N ++++IPA++SRC R AP
Sbjct: 141 LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRF-APLDG 199
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV--QQYPFQIDQQIV 179
+S L ++ + E L + L + S+ ++R+A+ + +++ + ++ + +QI
Sbjct: 200 VHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQIT 259
Query: 180 EPDWKIYI-------RDTAKL---IIS---EQSPKKLLEVRTRLYELLVHSIPVNVLFKY 226
E D +Y+ +D ++ +++ ++ K + E++TR +V + LF +
Sbjct: 260 EED--VYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIF 317
Query: 227 LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF 271
++ S ++ + I A E+R+ G + A +++F
Sbjct: 318 KIK-----MPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTF 357
Score = 147 (56.8 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 34/106 (32%), Positives = 56/106 (52%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP +L + H + + L E PHLL YGP G GK + I+A+ ++LYGP
Sbjct: 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100
Query: 63 ----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI 104
++ LN +D +R+ ++ + +T L +S+ V+
Sbjct: 101 YRNMILELNASDD---RGIDVVRQQIQDFASTQSFSLGKSSVKLVL 143
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 147 (56.8 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
++IL+E D +T AQ ALRRTMEK T R L N +S++I + SRC R P +
Sbjct: 145 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK-PLSD 203
Query: 123 EIVSV-LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
+I L +I KE + + E L + S+ +LR+AI +++
Sbjct: 204 KIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSA 247
Score = 144 (55.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP + ++ F + L+ L+ D P+LLFYGP G GK + I+A +EL+GP
Sbjct: 39 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 98
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ L ++ ++ EK
Sbjct: 99 LFRLRVLELNASDERGIQVVREK 121
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 147 (56.8 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV 63
WV+KYRP L + L+ L+ + PH+LFYGP G GK + I+AL K L+GP
Sbjct: 36 WVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPA 95
Query: 64 IILNETDHLTREAQQALRRTMEK 86
+ + L ++ + EK
Sbjct: 96 LYRSRILELNASDERGIGIVREK 118
Score = 147 (56.8 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+IIL+E D +T++AQ ALRRTME+Y R L N ++++I + SRC R +
Sbjct: 148 IIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNS 207
Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS 165
L I + E L++ +L SD +LRRAI +++
Sbjct: 208 AAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSA 250
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 127 (49.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 72 LTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI 131
+T AQQALRRTME Y T R L N+ ++I I+SRC +R T +I++ L N+
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 61
Query: 132 CKKE 135
+KE
Sbjct: 62 IEKE 65
>UNIPROTKB|Q9KQI3 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 KO:K02341
TIGRFAMs:TIGR00678 HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1
ProteinModelPortal:Q9KQI3 DNASU:2613394 GeneID:2613394
KEGG:vch:VC2015 PATRIC:20083062 OMA:AMNESAS ProtClustDB:PRK06090
Uniprot:Q9KQI3
Length = 324
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 44/160 (27%), Positives = 69/160 (43%)
Query: 25 HLRNLLKEGDFPHLLFYGPSGAGKK---------TRIMALLKELYG-PVIILNETDHLTR 74
H L++ G+ P P GK RI +L G +I++ D +
Sbjct: 66 HSCGLMQSGNHPDFHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNE 125
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
+ AL +T+E+ C IL + + ++P I SRC + +PAPT +V L K
Sbjct: 126 SSANALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWL----KG 181
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
+G+T P +AL L S R +L A K + Q+
Sbjct: 182 QGITTPA-YALHLCADSPLKTRAFMLEGGAEKYHELESQL 220
>TIGR_CMR|VC_2015 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR008921
InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 SUPFAM:SSF48019 KO:K02341 TIGRFAMs:TIGR00678
HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1 ProteinModelPortal:Q9KQI3
DNASU:2613394 GeneID:2613394 KEGG:vch:VC2015 PATRIC:20083062
OMA:AMNESAS ProtClustDB:PRK06090 Uniprot:Q9KQI3
Length = 324
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 44/160 (27%), Positives = 69/160 (43%)
Query: 25 HLRNLLKEGDFPHLLFYGPSGAGKK---------TRIMALLKELYG-PVIILNETDHLTR 74
H L++ G+ P P GK RI +L G +I++ D +
Sbjct: 66 HSCGLMQSGNHPDFHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNE 125
Query: 75 EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
+ AL +T+E+ C IL + + ++P I SRC + +PAPT +V L K
Sbjct: 126 SSANALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWL----KG 181
Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQI 174
+G+T P +AL L S R +L A K + Q+
Sbjct: 182 QGITTPA-YALHLCADSPLKTRAFMLEGGAEKYHELESQL 220
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 105 (42.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 56/230 (24%), Positives = 96/230 (41%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
V I++E L+ A AL +T+E+ IL + +V+P I SRC +
Sbjct: 123 VYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLS 182
Query: 123 EIVSVLTNICKKEGLTIPPEFALRL-AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
++ L I + EG+ I PE AL+L A+ + + R + + Y +I V+
Sbjct: 183 DMSRKLEKISQAEGINIEPE-ALKLIARSAGGSFRDGENLLQQIATT-YGTEISLPQVQA 240
Query: 182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNV----LFKYLLEGLLANCDS 237
I + K + K + L ++ I + L YL + +L N +
Sbjct: 241 ALGISGDERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGA 300
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM-YLQFMEDTLSNL 286
+ S+E+ A + + K S I ++E + A L F DT S+L
Sbjct: 301 E---GSLELTADEKKALQKVSA-ITNLEGITKAIKAFSQLDFSSDTASSL 346
Score = 64 (27.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHL-LFYGPSGAGKKT--RIMA 54
K+RP L L A+ L+N L G LF GP G GK + RI+A
Sbjct: 9 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILA 59
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 100 (40.3 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 42/173 (24%), Positives = 79/173 (45%)
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRL-ILC-ANSMSQVIPAIRSR---CLCIRIPA 118
+I++E D + + + + I ++ I+C N + P IRS C +R
Sbjct: 700 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH--PKIRSLVHYCFDLRFQR 757
Query: 119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAI----LMCEASKVQQYP-FQ 173
P E+I S + +I KEGL IPP + +++++R+ + + C SKV Y +
Sbjct: 758 PRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKVLTYDQAK 817
Query: 174 IDQQIVEPDWKIYIRDTAKLIIS--EQSPKKLLEVRTRLYELLVHSIPVNVLF 224
D Q + D ++ D + + + E++P L ++ +L H + LF
Sbjct: 818 ADSQRAKKDIRLGPFDVTRKVFAAGEETPHMSLMDKS---DLFFHDYSIAPLF 867
Score = 56 (24.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 35 FPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQAL 80
F L GP G GK T + +EL + LN +D ++ + +A+
Sbjct: 627 FKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAI 672
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 3 LWVDKYRPNNLQKL 16
LWVDKY+P +L+ +
Sbjct: 569 LWVDKYKPTSLKNI 582
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 103 (41.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 52 IMALL-KELYGPVIILNETDHLT---REAQQALRRTMEKYITTCRLI-LCANSMSQVIPA 106
IM+L ++L II++E D ++ + A+ + +EK T C +I +C + + +
Sbjct: 462 IMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK--TKCPIICICNDRQNNKMRT 519
Query: 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS 151
+ ++C ++ P +V L ICKKEG+ + P AL L +S
Sbjct: 520 LANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPN-ALELLWES 563
Score = 62 (26.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLL 30
LWV+KYRP NL +L + + L+N L
Sbjct: 352 LWVEKYRPKNLNELVGNNQNVIKLQNWL 379
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 103 (41.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 52 IMALL-KELYGPVIILNETDHLT---REAQQALRRTMEKYITTCRLI-LCANSMSQVIPA 106
IM+L ++L II++E D ++ + A+ + +EK T C +I +C + + +
Sbjct: 462 IMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLIEK--TKCPIICICNDRQNNKMRT 519
Query: 107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS 151
+ ++C ++ P +V L ICKKEG+ + P AL L +S
Sbjct: 520 LANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPN-ALELLWES 563
Score = 62 (26.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 3 LWVDKYRPNNLQKLDFHCKQANHLRNLL 30
LWV+KYRP NL +L + + L+N L
Sbjct: 352 LWVEKYRPKNLNELVGNNQNVIKLQNWL 379
>UNIPROTKB|Q3AG11 [details] [associations]
symbol:CHY_0051 "Putative DNA polymerase III, delta prime
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 KO:K02341 RefSeq:YP_358923.1
ProteinModelPortal:Q3AG11 STRING:Q3AG11 GeneID:3726269
KEGG:chy:CHY_0051 PATRIC:21273299 OMA:FLIHISE
BioCyc:CHYD246194:GJCN-51-MONOMER Uniprot:Q3AG11
Length = 267
Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
Identities = 57/222 (25%), Positives = 99/222 (44%)
Query: 28 NLLKEGDFPHLLFYGPSGAGKKTRIM--ALLKELY-GP------VIILNETDHLTREAQQ 78
NL + G P L+ P G+ K + L+ ++Y P VI+L E D +T +A
Sbjct: 52 NLFEAGTHPDFLWLAPDGSSFKIWQVNEVLIPKVYLTPQKGSRKVIVLEEVDKMTLDAAN 111
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK--EG 136
A +T+E+ +L A +V+P I SRC +++ A E+ +K E
Sbjct: 112 AFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVKVSA---EDFTGQYKGYAEKFYEL 168
Query: 137 LTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQID---QQIVEPDWKIYIRDTAK 192
LT+P EF + + + L +L E + + +D +++ PD R+ +
Sbjct: 169 LTLPWEEFYKKTEKITREELNNLLLAGEL--ILRDALIVDKGSEKLFYPDLFDKARELNR 226
Query: 193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
L E+ +LL RL + L + +N+ + +LE L N
Sbjct: 227 L--GEEEIYRLLN---RLEDFLAKT-RLNLNPRLVLENLYLN 262
>TIGR_CMR|CHY_0051 [details] [associations]
symbol:CHY_0051 "putative DNA polymerase III, delta prime
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 KO:K02341 RefSeq:YP_358923.1
ProteinModelPortal:Q3AG11 STRING:Q3AG11 GeneID:3726269
KEGG:chy:CHY_0051 PATRIC:21273299 OMA:FLIHISE
BioCyc:CHYD246194:GJCN-51-MONOMER Uniprot:Q3AG11
Length = 267
Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
Identities = 57/222 (25%), Positives = 99/222 (44%)
Query: 28 NLLKEGDFPHLLFYGPSGAGKKTRIM--ALLKELY-GP------VIILNETDHLTREAQQ 78
NL + G P L+ P G+ K + L+ ++Y P VI+L E D +T +A
Sbjct: 52 NLFEAGTHPDFLWLAPDGSSFKIWQVNEVLIPKVYLTPQKGSRKVIVLEEVDKMTLDAAN 111
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK--EG 136
A +T+E+ +L A +V+P I SRC +++ A E+ +K E
Sbjct: 112 AFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVKVSA---EDFTGQYKGYAEKFYEL 168
Query: 137 LTIP-PEFALRLAQQSDRNLRRAILMCEASKVQQYPFQID---QQIVEPDWKIYIRDTAK 192
LT+P EF + + + L +L E + + +D +++ PD R+ +
Sbjct: 169 LTLPWEEFYKKTEKITREELNNLLLAGEL--ILRDALIVDKGSEKLFYPDLFDKARELNR 226
Query: 193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN 234
L E+ +LL RL + L + +N+ + +LE L N
Sbjct: 227 L--GEEEIYRLLN---RLEDFLAKT-RLNLNPRLVLENLYLN 262
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 287 287 0.00087 115 3 11 22 0.44 33
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 606 (64 KB)
Total size of DFA: 208 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 26.26u 0.08s 26.34t Elapsed: 00:00:43
Total cpu time: 26.27u 0.08s 26.35t Elapsed: 00:00:45
Start: Thu Aug 15 10:49:37 2013 End: Thu Aug 15 10:50:22 2013