RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2281
(287 letters)
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 99
Score = 124 bits (314), Expect = 6e-37
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDS 237
+PDW I I + I+ E+S L+E R LY+LL H IP N++ K L LL ++
Sbjct: 1 KPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNT 60
Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
KS IE +++F+ R+ G+K IFH+E ++A M
Sbjct: 61 TNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 95
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 98.1 bits (243), Expect = 4e-25
Identities = 65/200 (32%), Positives = 92/200 (46%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
WV+KYRP L + L++ +K G PHLLF GP G GK T +AL +EL+
Sbjct: 14 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 73
Query: 61 ------------------------------------GPVIILNETDHLTREAQQALRRTM 84
+I L+E D LT++AQQALRRTM
Sbjct: 74 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 133
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E + + R IL N S++I I+SRC R E+I L I + EGL + E
Sbjct: 134 EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 193
Query: 145 LRLAQQSDRNLRRAILMCEA 164
+ ++ ++RRAI + +A
Sbjct: 194 QAILYIAEGDMRRAINILQA 213
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 83.5 bits (205), Expect = 1e-19
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 40/202 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L + + + + L+ + K+G+ PH++ G G GK T + L EL G
Sbjct: 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS 64
Query: 63 ---------------------------------------VIILNETDHLTREAQQALRRT 83
++IL+E D +T AQQALRRT
Sbjct: 65 YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRT 124
Query: 84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
ME Y + R N +++I ++S+C +R + E+++ L I K E + +
Sbjct: 125 MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 184
Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
+ ++ ++R+AI +++
Sbjct: 185 LEAIIFTAEGDMRQAINNLQST 206
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 82.4 bits (202), Expect = 2e-19
Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 50/229 (21%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP NL ++ L+ LK + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61
Query: 63 -------------------------------------------------VIILNETDHLT 73
+IIL+E D +T
Sbjct: 62 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 121
Query: 74 REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
+AQ ALRRTME Y R L N ++++I + S+C R A + L I +
Sbjct: 122 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE 181
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
+E + R+ S +LRR I + +++ + I
Sbjct: 182 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQ 230
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 76.3 bits (186), Expect = 4e-17
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 39/200 (19%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
WV+KYRP L ++ + +R + EG PHLLFYGP G GK + I+AL +E+YG
Sbjct: 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 63
Query: 63 --------------------------------------VIILNETDHLTREAQQALRRTM 84
+IIL+E D +T AQ ALRR +
Sbjct: 64 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 123
Query: 85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
E+Y R + AN ++ PA+ S+C R E I + N+ E L + P
Sbjct: 124 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 183
Query: 145 LRLAQQSDRNLRRAILMCEA 164
L + S+ ++RR + + ++
Sbjct: 184 KALIELSNGDMRRVLNVLQS 203
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 75.9 bits (186), Expect = 6e-17
Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 7/160 (4%)
Query: 11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------V 63
N + +++G F L+ + K LL + V
Sbjct: 59 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 118
Query: 64 IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
+++E L+R + AL +T+E+ + +L ++ I SRCL + A E+
Sbjct: 119 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 178
Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163
I L +I +E + P LA+ ++ +LR A+ + +
Sbjct: 179 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 218
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 68.2 bits (166), Expect = 2e-14
Identities = 24/190 (12%), Positives = 62/190 (32%), Gaps = 45/190 (23%)
Query: 22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62
Q L+ ++++ + +L G + + + L + +
Sbjct: 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI 61
Query: 63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102
+I+++ + +T++A A + +E+ ++L
Sbjct: 62 DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121
Query: 103 VIPAIRSRCLCIRIPAPTH------EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLR 156
++P I+SR + + P E+I + + E A +L + L
Sbjct: 122 LLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGLM 181
Query: 157 RAILMCEASK 166
++ + E K
Sbjct: 182 ESLKVLETEK 191
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 61.0 bits (146), Expect = 1e-11
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKELYGP 62
WVDKYRP +L L + + N L++L + D PHLL YGP+G GKKTR MALL+ ++GP
Sbjct: 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60
Query: 63 VIILNETDH 71
+ + D
Sbjct: 61 GVYRLKIDV 69
Score = 44.0 bits (102), Expect = 7e-06
Identities = 48/119 (40%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
+I+NE + LT++AQ ALRRTMEKY RLI+ +SMS +I I+S+CL IR PAP+
Sbjct: 134 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDS 193
Query: 123 EIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIV 179
EI ++L+++ E + + + L R+AQ S+ NLR ++LM E+ + + + I+
Sbjct: 194 EISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPII 252
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 59.4 bits (142), Expect = 4e-11
Identities = 46/253 (18%), Positives = 78/253 (30%), Gaps = 67/253 (26%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------------GDFPHLLFYGPS 44
LW KY P NLQ++ + L+N L G F + YGP
Sbjct: 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61
Query: 45 GAGKKTRIMALLKELY-------------------------------------------- 60
G GK T + +EL
Sbjct: 62 GIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLN 121
Query: 61 --GPVIILNETDHLTREAQQALRRTMEKYITTCRL--ILCANSMSQVIPAIRSRCLCIRI 116
VII++E D ++ + + + + T ++C + CL I+
Sbjct: 122 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQF 181
Query: 117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ 176
P I S L I +E + P RL Q + ++R+ I + I+
Sbjct: 182 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKT--INH 239
Query: 177 QIVEPDWKIYIRD 189
+ + K + ++
Sbjct: 240 ENINEISKAWEKN 252
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 56.9 bits (136), Expect = 4e-10
Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 46/183 (25%)
Query: 28 NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--------------------------- 60
++ HLL +GP G GK T + EL
Sbjct: 28 AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEE 87
Query: 61 GPVIILNETDHLTREAQQALRRTMEKYIT----------------TCRLILCANSMS--- 101
G ++ ++E L+R+A++ L ME ++ R L +
Sbjct: 88 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL 147
Query: 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM 161
P + + + T EE+ + + G+ I E AL + ++S +R A +
Sbjct: 148 ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRL 207
Query: 162 CEA 164
Sbjct: 208 FRR 210
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 51.7 bits (124), Expect = 2e-09
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 194 IISEQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLL-ANCDSDLKSKSIEMAAMFE 251
++ L+ R +L E+L+ + + + + + + K + +
Sbjct: 10 MMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYN 69
Query: 252 HRIHKGSKPIFHIEAYVASFMAMY 275
R+ +G+ I +EA +A F +
Sbjct: 70 FRLVEGANEIIQLEALLAQFTLIG 93
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 45.3 bits (106), Expect = 3e-06
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 45/181 (24%)
Query: 28 NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILN-------------------- 67
++ H+L GP G GK T + EL + + +
Sbjct: 28 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG 87
Query: 68 ------ETDHLTREAQQALRRTMEKYI-------------------TTCRLILCANSMSQ 102
E L + ++ L +E + + S
Sbjct: 88 DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 147
Query: 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162
P + + + T +E+ ++ + I A +A++S R AI +
Sbjct: 148 SSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 207
Query: 163 E 163
+
Sbjct: 208 K 208
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 44.3 bits (104), Expect = 8e-06
Identities = 21/160 (13%), Positives = 36/160 (22%), Gaps = 48/160 (30%)
Query: 36 PHLLFYGPSGAGKKTRIMALLKELYGPVI------------------------------- 64
+ LF GP +GK T ALL+ G +
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 214
Query: 65 ----------ILNETDHLTRE------AQQALRRTMEKYITTCRLILCANS-MSQVIPAI 107
+N D+L + ++ I+ N
Sbjct: 215 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQA 274
Query: 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
R P + + + +K + L L
Sbjct: 275 RFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLML 314
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 38.6 bits (88), Expect = 4e-04
Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 1/104 (0%)
Query: 19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQ 77
L + G H LL G G I AL + L +++ R Q
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH 121
T Y T + + +
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAK 110
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 37.1 bits (84), Expect = 0.002
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE------GDFPHLLFYGPSGAGKKTRIMAL 55
S++ Y P L + +Q L LL +P G G GK + L
Sbjct: 7 SVFSPSYVPKRLPHRE---QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKL 63
Query: 56 LKEL 59
+
Sbjct: 64 WELY 67
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 35.0 bits (79), Expect = 0.005
Identities = 21/175 (12%), Positives = 46/175 (26%), Gaps = 8/175 (4%)
Query: 34 DFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRL 93
+ G GAGK T L + Y V + L R Q + I C
Sbjct: 7 QVSVIFVLGGPGAGKGT-QCEKLVKDYSFVHL--SAGDLLRAEQGRAGSQYGELIKNCIK 63
Query: 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQS 151
+ +R+ I + + I +
Sbjct: 64 EGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP 123
Query: 152 DRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEV 206
+ + +L + + ++ + + + +I ++ K++ V
Sbjct: 124 EDIMLERLLER---GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 175
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 33.8 bits (76), Expect = 0.011
Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 11/175 (6%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
+ G GAGK T A + E YG + L R+ ++ + I I
Sbjct: 4 VFVLGGPGAGKGT-QCARIVEKYGYTHL--SAGELLRDERKNPDSQYGELIEKY--IKEG 58
Query: 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ------S 151
+ I + + A ++ ++ + + +
Sbjct: 59 KIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 118
Query: 152 DRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEV 206
D N I C +++ +E + Y++ T +I + K+ ++
Sbjct: 119 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 173
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 34.3 bits (77), Expect = 0.012
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 7 KYRPNNLQKLDFHCKQ-ANHLRNLLKEGDFP-----HLLFYGPSGAGKKTRIMALLKEL 59
Y P L+ + A N L G G G GK T +K +
Sbjct: 12 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 70
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 33.3 bits (76), Expect = 0.020
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVI-ILNETDH 71
L+F GP+ GK M+ + + G VI +N T H
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSH 90
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.8 bits (71), Expect = 0.044
Identities = 13/84 (15%), Positives = 28/84 (33%)
Query: 34 DFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRL 93
F + P+G+GK T++ A V++LN + T + +
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTG 66
Query: 94 ILCANSMSQVIPAIRSRCLCIRIP 117
+ + S + + + L
Sbjct: 67 VRTITTGSPITYSTYGKFLADGGC 90
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 31.5 bits (70), Expect = 0.093
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 26 LRNLLKEGDFPHL-LFYGPSGAGKKTRIMALLKELYGPVIILN 67
L K + P L G G+GK + A+ +E G VI+++
Sbjct: 22 LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 64
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 30.7 bits (68), Expect = 0.11
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETD 70
LL G G+GK T AL P + + D
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 39
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 31.1 bits (70), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDH 71
+ EG+F ++F GPSG GK T R++A L+ + + + E
Sbjct: 23 IHEGEF--VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 64
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.3 bits (67), Expect = 0.14
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 36 PHLLFYGPSGAGKKTRIMALLKELY--GPVIILNETDHLTREAQQALRRTMEKYITTCRL 93
P L F SG GK T + L+ L G L + H + + + + E
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQ 62
Query: 94 ILCAN 98
+ A+
Sbjct: 63 TIVAS 67
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 30.3 bits (68), Expect = 0.22
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 26 LRNL---LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDHLTREAQQAL 80
L+ L L+ G+ GP+G+GK T ++ L + G ++L+ L + + L
Sbjct: 30 LQGLTFTLRPGEV--TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP-LPQYEHRYL 86
Query: 81 RRTM 84
R +
Sbjct: 87 HRQV 90
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 30.2 bits (68), Expect = 0.23
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDHLTREAQQALRRTMEK 86
+ GD + G SG+GK T R + L++ II+N + + + +K
Sbjct: 25 ARAGDV--ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.23
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
++ GPSGAGK T + L +E I H TR + + Y T ++
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEH--SSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 60
Query: 98 NSMSQVIP 105
+ I
Sbjct: 61 IAAGDFIE 68
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 30.2 bits (68), Expect = 0.25
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETD--HLTREAQQALRRTME 85
+ G G SGAGK T R + LL+ ++++ + L+ RR +
Sbjct: 28 VPAGQI--YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIG 85
Query: 86 KYITTCRLILCANSMSQVIPAIR 108
L+ V +
Sbjct: 86 MIFQHFNLLSSRTVFGNVALPLE 108
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 30.1 bits (67), Expect = 0.28
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 8/139 (5%)
Query: 19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQ 78
++ L E ++L GP+G GK L K P I + T E
Sbjct: 33 RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK--FTEVGY 90
Query: 79 ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
+ + L ++M V ++ R E I+ L K +
Sbjct: 91 VGKEVD-----SIIRDLTDSAMKLVRQQEIAKN-RARAEDVAEERILDALLPPAKNQWGE 144
Query: 139 IPPEFALRLAQQSDRNLRR 157
+ + +Q+ R R
Sbjct: 145 VENHDSHSSTRQAFRKKLR 163
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 29.7 bits (66), Expect = 0.28
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLK----EL 59
+ + YR K + L +++ +F G SG GK + + A+
Sbjct: 66 YAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT 125
Query: 60 YGPVIILNETDHLTREAQ 77
L H TR +
Sbjct: 126 NEISEHLGRGKHTTRHVE 143
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.9 bits (67), Expect = 0.31
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDHLTREAQQALRRTMEKY 87
+K+G+F ++ GPSG GK T R++A L+E I + + E +
Sbjct: 26 VKDGEF--MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83
Query: 88 ITTC 91
Sbjct: 84 AMVF 87
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.2 bits (64), Expect = 0.36
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIIL 66
++ G S AGK + L L P +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAF 34
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 29.4 bits (66), Expect = 0.43
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEK 86
+L GP G GK A+ E P I + +D + +R E
Sbjct: 45 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFET 96
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.2 bits (64), Expect = 0.44
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 39 LFYGPSGAGKKT---RIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYIT 89
+ G G G T M L++ +++ + A++ + +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMR 58
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.8 bits (63), Expect = 0.45
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREA 76
+ GP+G GK T L +L I E D +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI--EGDIINHMV 41
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 29.2 bits (65), Expect = 0.46
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDHLTREAQQALRRTM 84
+ +GD ++ GP+G+GK T ++ + + D +E + +
Sbjct: 27 VNKGDVTLII--GPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.1 bits (65), Expect = 0.54
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDHLTREAQQALRRTM 84
++ G+ HL+ GP+GAGK T MA + G + + + AL R
Sbjct: 22 VRAGEILHLV--GPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAY 76
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 0.59
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVII 65
+L G G+GK T + + G I
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNI 32
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.6 bits (63), Expect = 0.67
Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 3/79 (3%)
Query: 38 LLFYGPSGAGKKT---RIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLI 94
++ G G GK T ++ K+ V ++ + +Q + + +
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 74
Query: 95 LCANSMSQVIPAIRSRCLC 113
+ + +
Sbjct: 75 GEKDVVGIAKRGVEKFLSE 93
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 28.6 bits (64), Expect = 0.73
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETD--HLTREAQQALRRTME 85
+KEG+F + GPSG+GK T I+ L + + ++ L + +RR
Sbjct: 28 IKEGEF--VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI 85
Query: 86 KYI 88
++
Sbjct: 86 GFV 88
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.6 bits (62), Expect = 0.74
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 28 NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDH 71
LK P L G GK + I + EL P I L+
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 65
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 28.6 bits (64), Expect = 0.79
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDH 71
+K+G+F L+ GPSG GK T R++A L+E I + D
Sbjct: 29 IKDGEF--LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV 70
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 28.3 bits (62), Expect = 0.85
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Query: 36 PHLLFYGPSGAGKKTRIMALLKELYG--PVIILNETDHLTREAQQALRRTMEKYITTCRL 93
L G GAGK T + +L E +G +I NE ++ + Q R + T
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQ-IKTLTNG 62
Query: 94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR 153
+C + +++ A+ + + +V T + + L Q+
Sbjct: 63 CICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLL 122
Query: 154 NLRRAILMCEASKVQQYPFQIDQQIVE 180
+ A++ + Q F I Q V
Sbjct: 123 DGVIALVDAVHADEQMNQFTIAQSQVG 149
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 28.3 bits (63), Expect = 0.92
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR---EAQQALRRTMEK 86
+L GP G GK A+ E P ++ +D + +R E+
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 99
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.1 bits (61), Expect = 0.93
Identities = 12/124 (9%), Positives = 34/124 (27%), Gaps = 1/124 (0%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
+ G SG+GK + +L+ + + + A + L
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 68
Query: 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLR 156
++ + + + + +++ L + RL + +
Sbjct: 69 DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK 128
Query: 157 RAIL 160
+L
Sbjct: 129 TQML 132
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 28.3 bits (63), Expect = 0.99
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)
Query: 26 LRNL---LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV--IILNETDHLTREAQQAL 80
LR++ + + F GPSG GK T I +LL+ Y P I + + + +
Sbjct: 18 LRDISFEAQPNSI--IAFAGPSGGGKST-IFSLLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
R + +++ I+ + + + + T
Sbjct: 75 RSQI-GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133
Query: 141 PEFALRLA--QQSDRNLRRAILM 161
E ++++ Q+ + RA L
Sbjct: 134 GERGVKISGGQRQRLAIARAFLR 156
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.9 bits (61), Expect = 1.1
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 14/159 (8%)
Query: 36 PHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLIL 95
++ G +GK T L+K Y I L R A ++
Sbjct: 4 LKVMISGAPASGKGT-QCELIKTKYQLAHI--SAGDLLRAEIAAGSENGKRAKEFMEKGQ 60
Query: 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNL 155
I + R+ P +E +L + + E + +
Sbjct: 61 LVPDE------IVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALET-----LEIRPDT 109
Query: 156 RRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLI 194
+ + + V++ F ++ V+ + Y ++ L+
Sbjct: 110 FILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLL 148
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 1.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 37 HLLFYGPSGAGKKTRIMALLKELY---GPVIIL 66
HLL G +G GK + L ++I+
Sbjct: 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 84
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 28.2 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 39 LFYGPSGAGKKTRIMALLKELYGP 62
L G +G+GK + + A+L LY P
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWP 50
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 28.3 bits (62), Expect = 1.2
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 2/134 (1%)
Query: 17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREA 76
Q + L +E LF G G + + + +
Sbjct: 151 HVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDG 210
Query: 77 QQALRRTMEKYITTCRLILCANSMSQV--IPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
QQ+ R+ +I T + I + + I + EE++ L +
Sbjct: 211 QQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAAR 270
Query: 135 EGLTIPPEFALRLA 148
+ + P L A
Sbjct: 271 MKIVVEPTGCLSFA 284
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 1.3
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 39 LFYGPSGAGKKT---RIMALLKELYGPVIILNETDHLTREAQQAL----RRTMEKYITTC 91
+ G G GK T ++ +L I+N D + A + R M K
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 92 RLILCANSMSQVIPAIRSRCLCIRI 116
+ L ++ + R+
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLF 89
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 95
Score = 26.7 bits (59), Expect = 1.3
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 220 VNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA 273
+ + K L + + + + + A E+ I KG A + + A
Sbjct: 40 IEGIVKILED--YELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKA 91
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 38 LLFYGPSGAGKKTRIMALLKEL 59
++ GPSG GK T + L E
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEY 25
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 27.9 bits (62), Expect = 1.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 42 GPSGAGKKTRIMALLKELYGPVI--ILNETDHLTREAQQALRRTM 84
G SG+GK T I +L+ Y IL + L +LR +
Sbjct: 48 GRSGSGKST-IASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 27.6 bits (60), Expect = 1.4
Identities = 17/169 (10%), Positives = 47/169 (27%), Gaps = 5/169 (2%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
+ G G+GK T A + +G + L+ D L +E Q + +
Sbjct: 9 VFVLGGPGSGKGT-QCANIVRDFG-WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP 66
Query: 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR 157
+ ++ + + N ++ + + + +
Sbjct: 67 SIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQ 126
Query: 158 AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEV 206
+L + + ++ + + T +I K+ +
Sbjct: 127 RLLKR---GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKII 172
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.4 bits (59), Expect = 1.5
Identities = 14/134 (10%), Positives = 31/134 (23%), Gaps = 2/134 (1%)
Query: 37 HLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILC 96
++ GP GAGK T L ++L + + + + +
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD--QEIEKRTGADVGWVFDLEGEEGFRDRE 61
Query: 97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLR 156
++++ + E + T + R + R L
Sbjct: 62 EKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLL 121
Query: 157 RAILMCEASKVQQY 170
Sbjct: 122 HVETPPREVLEALA 135
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.1 bits (59), Expect = 1.9
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 73 TREAQQALRRTMEKYITTCRLILCANS-----MSQVIPAIRSRC---LCIRIPAPTHEEI 124
Q + I+ A+ + V + SR + + I
Sbjct: 112 KERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRF 171
Query: 125 VSVLTNICKKEGLTIPPEFALRLAQQSDRNLR 156
++ K+ L + E L + + +N+R
Sbjct: 172 -KIIKEKLKEFNLELRKEVIDYLLENT-KNVR 201
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 1.9
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 42 GPSGAGKKT---RIMALLKELYG---PVIILNETD-HLTREAQQALRRTMEKYI 88
GP G+GK +I L E YG + + D +LT E Q L +
Sbjct: 34 GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNK 87
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDH 71
+++G+ + GP+G GK T + ++ + II N
Sbjct: 24 IEKGNVVNFH--GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI 65
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.0 bits (59), Expect = 2.5
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 11 NNLQKLDFHCKQANHLRNL---LKEGDFPHLLFYGPSGAGKKT--RIMA-LLKELYGPVI 64
N+ K F + L N+ ++ G+ GPSGAGK T RI+A L G +
Sbjct: 7 KNVSK-VFKKGKVVALDNVNINIENGER--FGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 65 ILNET-DHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
+ + R + T L + + + + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.8 bits (59), Expect = 2.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQAL 80
+L G SG GK + L+K G ++ ++ + ++ L
Sbjct: 18 VLITGDSGIGKSETALELIKR--GHRLVADDNVEIREISKDEL 58
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 35 FPHLLFYGPSGAGKKTRIMALLKELYGPVIILNE 68
P++L G G GK T L + I + +
Sbjct: 4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGD 37
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.7 bits (58), Expect = 2.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 42 GPSGAGKKTRIMALLKEL 59
G G G++ L+ +
Sbjct: 10 GAHGVGRRHIKNTLITKH 27
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 27.1 bits (59), Expect = 2.8
Identities = 17/91 (18%), Positives = 34/91 (37%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
+LFYGP G GK A+ E I + + LT ++ E + + C
Sbjct: 44 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 103
Query: 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVL 128
++ ++R I + +++ +
Sbjct: 104 LFFDELDSIAKARGGNIGDGGGAADRVINQI 134
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.5 bits (57), Expect = 3.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 37 HLLFYGPSGAGKKTRIMALLKEL 59
H+ GP G GK T I + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVL 25
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.5 bits (57), Expect = 3.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 42 GPSGAGKKTRIMALLKEL 59
GPS GK T + L + +
Sbjct: 9 GPSAVGKSTVVRCLRERI 26
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 27.0 bits (59), Expect = 3.1
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALR 81
L + L+ G H G +G GK I ++ ++ P +++ L + L+
Sbjct: 23 LVDGLRRGV-KHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELK 77
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.4 bits (58), Expect = 3.3
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQAL 80
+L G SG GK + L++ G +I ++ + ++ +Q +
Sbjct: 17 VLITGDSGVGKSETALELVQR--GHRLIADDRVDVYQQDEQTI 57
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.3 bits (57), Expect = 3.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 42 GPSGAGKKTRIMALLKE 58
PSGAGK + I ALLK
Sbjct: 9 APSGAGKSSLIQALLKT 25
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.4 bits (58), Expect = 3.5
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTME 85
+L G SG GK + L+ + + + I + L AQ+ ++ ME
Sbjct: 18 VLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFME 70
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 5.2
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
++ G GAGK T I L + +N + Q + + + + ++
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSA--GYVHVNRDTLGSW---QRCVSSCQAALRQGKRVVID 71
Query: 98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
N+ V R P +
Sbjct: 72 NTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARH 108
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 25.7 bits (55), Expect = 5.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 37 HLLFYGPSGAGKKTRIMALLKELYGPVII 65
++L G G GK + + EL G +
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHL 35
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.8 bits (55), Expect = 5.3
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 38 LLFYGPSGAGKKTRIMALLKELY 60
+ G +GK AL L
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLN 31
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 25.6 bits (55), Expect = 5.6
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 37 HLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQ 78
+L+ G GAGK T + YG I T + R A +
Sbjct: 2 NLVLMGLPGAGKGT-QAEKIVAAYGIPHI--STGDMFRAAMK 40
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 5.6
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 42 GPSGAGKKT---RIMALLKELYGPVIILNETDHLTREAQQALRRTMEK 86
G SGAG T + + + + E D R + ++ +++
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKAVSI-EGDAFHRFNRADMKAELDR 57
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 25.7 bits (56), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 42 GPSGAGKKT--RIMALLKELYGPVIILNETD 70
GP+GAGK ++A + + + LN D
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 6.1
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMALL 56
++ G++ + GP+GAGK ++A
Sbjct: 23 VESGEY--FVILGPTGAGKTLFLELIAGF 49
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 25.9 bits (56), Expect = 6.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 36 PHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDH 71
++L GP+G+GK L K L P+ I + T
Sbjct: 69 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL 104
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.6 bits (55), Expect = 6.3
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 42 GPSGAGKKTRIMALLKEL 59
G +GK T + +
Sbjct: 8 GYKHSGKTTLMEKWVAAA 25
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.5 bits (55), Expect = 6.4
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 38 LLFYGPSGAGKKT---RIMALLKELYGPVIILNETDHLTREAQQA 79
++ G +G GK T ++ + + V++ +Q
Sbjct: 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQL 58
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.4 bits (54), Expect = 6.6
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 39 LFYGPSGAGKKTRIMALLKELYGPVI 64
G +GK + L
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSA 36
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 190
Score = 25.5 bits (56), Expect = 6.7
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 115 RIPAPTHEEIV--SVLTNICKKEGLTIPPEFA 144
++PAP H +++ ++L +CK + ++P A
Sbjct: 71 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLA 102
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.6 bits (56), Expect = 6.9
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 26 LRNL---LKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59
L+N+ +++G+ L G +G+GK + +M +L EL
Sbjct: 52 LKNINLNIEKGEM--LAITGSTGSGKTSLLMLILGEL 86
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (56), Expect = 7.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 30 LKEGDFPHLLFYGPSGAGKKT--RIMA-LLKELYGPVIILNETDHLTREAQQAL 80
++EG+ L+ GP+GAGK T RI++ L+K G V + + + L
Sbjct: 25 IEEGEIFGLI--GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 76
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 25.7 bits (56), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 28 NLLKEGDFPHLLFYGPSGAGKKT 50
N+ K+GD +F+G SG GK T
Sbjct: 9 NVGKQGDV--TVFFGLSGTGKTT 29
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 25.2 bits (54), Expect = 7.3
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 37 HLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQ 78
+++ G GAGK T + E YG I T + R A Q
Sbjct: 2 NIVLMGLPGAGKGT-QADRIVEKYGTPHI--STGDMFRAAIQ 40
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.6 bits (55), Expect = 7.4
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 12/111 (10%)
Query: 34 DFPHLLFYGPSGAGKKTRIMALLKELYGP-----------VIILNETDHLTREAQQALRR 82
D P + G AGK + + + + P V+ L + E +
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGK 84
Query: 83 TMEKYITTCRLILCA-NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
+ I + ++ I + +R+ +P + V
Sbjct: 85 KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGM 135
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 25.6 bits (55), Expect = 7.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 40 FYGPSGAGKKTRIMALLKELYGPVIILNETD 70
G GK T+ L K+L +L +
Sbjct: 8 IEGLDRTGKTTQCNILYKKLQPNCKLLKFPE 38
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 25.5 bits (56), Expect = 7.8
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 26 LRNL---LKEGDFPHLLFYGPSGAGKKT--RIMALLKELYGPVIILNETDHLTREAQQAL 80
L+++ +++G+ + F G SG GK T ++ ++ I+++ + + +L
Sbjct: 34 LKDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN-IKDFLTGSL 90
Query: 81 RRTM 84
R +
Sbjct: 91 RNQI 94
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 25.7 bits (56), Expect = 7.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 39 LFYGPSGAGKKT 50
+F+G SG GK T
Sbjct: 18 VFFGLSGTGKTT 29
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 25.0 bits (53), Expect = 8.4
Identities = 13/99 (13%), Positives = 27/99 (27%)
Query: 36 PHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLIL 95
P + G G+GK T L K L ++ + A + R+
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEE 61
Query: 96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
+ + +P ++ T + +
Sbjct: 62 DVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLE 100
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 25.3 bits (54), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 37 HLLFYGPSGAGKKT---RIMALLKEL 59
+L +G G GK T + ALL E+
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLPEI 55
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 25.5 bits (55), Expect = 9.5
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 4 WVDKYRPNNLQKLDFHC----KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL 59
++ Y N+ +D H ++A + + ++ ++ G SGAGK ++
Sbjct: 61 IINAYSGQNMGDMDPHIFAVAEEA--YKQMARDERNQSIIVSGESGAGKTVSAKYAMR-- 116
Query: 60 YGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA 97
+ + A +E+ + I+ +
Sbjct: 117 -----------YFATVSGSASEANVEEKVLASNPIMES 143
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 24.9 bits (53), Expect = 9.9
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 37 HLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILC 96
+L GP GAGK T L E G I T L R + +
Sbjct: 2 RVLLLGPPGAGKGT-QAVKLAEKLGIPQI--STGELFRRNIEE-GTKLGVEAKRYLDAGD 57
Query: 97 ANSMSQVIPAIRSRC 111
+ R
Sbjct: 58 LVPSDLTNELVDDRL 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.408
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,051,642
Number of extensions: 48421
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 131
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.8 bits)