BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2283
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 148/241 (61%), Gaps = 11/241 (4%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
S+ S++ +++L + N I +W +G+ YTQAV NIR+VG TA L+ L E+
Sbjct: 86 SWPSDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNIRIVGAETAYLIQQLLTELSYNP 145
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
E VH+IGHSLGAH +G G L ++GR+TGLDPA+P F VRLDP+DA FV
Sbjct: 146 ENVHIIGHSLGAHTAGEAGRRLEG----RVGRVTGLDPAEPCFQDASEEVRLDPSDAQFV 201
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFA-FIHLERGSVVKGLRK 284
D++HTDA+P + G GM + +GH+DF+PNGG+ PGC + F+ FI + + +G +
Sbjct: 202 DVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFSTFIDIN--GIWQGAQD 259
Query: 285 YLGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKH 344
YL C+H++S+EY++ S+ F+A CD++D F CF C C K G A ++
Sbjct: 260 YLACNHLKSFEYYSSSILNPDGFLAYPCDSYDKFQENGCFPCPAGG---CPKMGHYADQY 316
Query: 345 R 345
+
Sbjct: 317 K 317
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 459 CYGEYGCYSLKYPWTND-ARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S PW R L P P + + LYT NP Q + ++ TI +
Sbjct: 4 CYTPLGCFSDDKPWAGTLQRPLKSLPWSPEEVNTRFLLYTNKNPDSYQLITARDVATIKS 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLW 541
S S +T + HGF + GE W
Sbjct: 64 SNFQSSRKTHFVIHGFRDRGEDSW 87
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
S + + L + VN I +W GS YTQA NIR+VG A + L+ +G V
Sbjct: 88 SNICKNLFKVESVNCICVDWKGGSRTGYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNV 147
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
H+IGHSLG+H +G G RT N + RITGLDPA+P F GT +VRLDP+DA FVD++
Sbjct: 148 HVIGHSLGSHAAGEAGR--RT--NGTIERITGLDPAEPCFQGTPELVRLDPSDAKFVDVI 203
Query: 230 HTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTDAAP + G GM + +GHLDF+PNGG+ PGC + + + I ++ + +G R ++ C
Sbjct: 204 HTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQKNILSQI-VDIDGIWEGTRDFVAC 262
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNC 326
+H+RSY+Y+ +S+ F CD+++ F A CF C
Sbjct: 263 NHLRSYKYYADSILNPDGFAGFPCDSYNVFTANKCFPC 300
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
C+ GC+S PW R L P P + + LYT N Q L +P TI N
Sbjct: 4 CFPRLGCFSDDAPWAGIVQRPLKILPWSPKDVDTRFLLYTNQNQNNYQELV-ADPSTITN 62
Query: 518 SFLIPSHRTFIISHGFLEDGERLWI 542
S +T I HGF++ GE W+
Sbjct: 63 SNFRMDRKTRFIIHGFIDKGEEDWL 87
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 149/269 (55%), Gaps = 22/269 (8%)
Query: 111 ELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVH 170
++ +++ + VN I +W GS YTQA N R+VG A L+ L E+G E VH
Sbjct: 90 DMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVH 149
Query: 171 LIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIVH 230
LIGHSLGAH+ G G L +GRITGLDPA+P F G VRLDP+DA FVD++H
Sbjct: 150 LIGHSLGAHVVGEAGRRLEG----HVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIH 205
Query: 231 TDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCD 289
TD+AP + G GM + +GHLDF+PNGG+ PGC + + + I ++ + +G + ++ C+
Sbjct: 206 TDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTI-VDINGIWEGTQNFVACN 264
Query: 290 HIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQL 349
H+RSY+Y+ S+ F+ C +++ F +CF C C K G H Q
Sbjct: 265 HLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEE---GCPKMG-----HYADQF 316
Query: 350 QALGMSVYKPVYESKPSKYFLITGDKQPF 378
+ +V + VY L TGD F
Sbjct: 317 EGKTATVEQTVY--------LNTGDSGNF 337
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 459 CYGEYGCYSLKYPWTND-ARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CYG GC+S PW R L FP P + + LYT NP Q + P+TI
Sbjct: 4 CYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKF 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWI 542
S +T I HGF++ GE W+
Sbjct: 64 SNFQLDRKTRFIVHGFIDKGEDGWL 88
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 6/221 (2%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
S+ S + + + + VN I +W +GS Y+QA N+R+VG A L+ L+
Sbjct: 85 SWLSTMCQNMFKVESVNCICVDWKSGSRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSP 144
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
VH+IGHSLG+H +G G RT N +GRITGLDPA+P F GT +VRLDP+DA FV
Sbjct: 145 SNVHIIGHSLGSHAAGEAGR--RT--NGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFV 200
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKY 285
D++HTD APF+ G GM + GHLDF+PNGG+ PGC + + + I ++ + +G R +
Sbjct: 201 DVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQI-VDIDGIWQGTRDF 259
Query: 286 LGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNC 326
C+H+RSY+Y+T+S+ F C ++ +F A CF C
Sbjct: 260 AACNHLRSYKYYTDSILNPDGFAGFSCASYSDFTANKCFPC 300
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S PW R L P P + + LYT NP Q + +P TI +
Sbjct: 4 CYERLGCFSDDSPWAGIVERPLKILPWSPEKVNTRFLLYTNENPDNFQEIV-ADPSTIQS 62
Query: 518 SFLIPSHRTFIISHGFLEDGERLWI 542
S +T I HGF++ GE W+
Sbjct: 63 SNFNTGRKTRFIIHGFIDKGEESWL 87
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 146/269 (54%), Gaps = 23/269 (8%)
Query: 111 ELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVH 170
++ + + ++VN I +W GS YTQA N+R+VG A +L+ L V
Sbjct: 90 DMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQ 149
Query: 171 LIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIVH 230
LIGHSLGAH++G GS RT LGRITGLDP + F GT VRLDPTDA FVD++H
Sbjct: 150 LIGHSLGAHVAGEAGS--RTP---GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIH 204
Query: 231 TDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCD 289
TDAAP + G G + +GHLDF+PNGGE PGC + + I ++ + +G R ++ C+
Sbjct: 205 TDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQI-VDLDGIWEGTRDFVACN 263
Query: 290 HIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQL 349
H+RSY+Y++ES+ F + C ++ F + CF C C + G A K
Sbjct: 264 HLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQ---GCPQMGHYADK------ 314
Query: 350 QALGMSVYKPVYESKPSKYFLITGDKQPF 378
+ + KYFL TGD F
Sbjct: 315 -------FAVKTSDETQKYFLNTGDSSNF 336
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY + GC+S PW A R L P P + + LYT NP Q L +P TI
Sbjct: 4 CYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGA 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWI 542
S +T I HGF++ GE W+
Sbjct: 64 SNFQTDKKTRFIIHGFIDKGEENWL 88
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEH-RQVVGG 59
+ Y V++ +S A+ G+ + + G+KG T ++FK KPG+ H +
Sbjct: 339 WRYGVSITLSGKRAT-------GQAKVALFGSKGNTHQFNIFK-GILKPGSTHSNEFDAK 390
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSELTRQLLIK 119
VG I V F W + + VN ++ A + + V+ EEK TV SF SE T ++
Sbjct: 391 LDVGTIEKVKFLWNNNV-VNPTFPKVGA----AKITVQKGEEK-TVHSFCSEST----VR 440
Query: 120 DDV 122
+DV
Sbjct: 441 EDV 443
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 132/218 (60%), Gaps = 6/218 (2%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
+ + + L + VN I +W GS YTQA NIR+VG A + L+ G V
Sbjct: 88 ANVCKNLFKVESVNCICVDWKGGSRTGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNV 147
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
H+IGHSLGAH +G G RT N +GRITGLDPA+P F GT +VRLDP+DA FVD++
Sbjct: 148 HVIGHSLGAHAAGEAGR--RT--NGTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVI 203
Query: 230 HTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTD AP V G GM + +GHLDF+PNGG PGC + + + I ++ + +G R + C
Sbjct: 204 HTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGCKKNILSQI-VDIDGIWEGTRDFAAC 262
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNC 326
+H+RSY+Y+T+S+ F C +++ F A CF C
Sbjct: 263 NHLRSYKYYTDSIVNPDGFAGFPCASYNVFTANKCFPC 300
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 459 CYGEYGCYSLKYPWTN-DARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S PW+ R L P P + + LYT NP Q + + +I
Sbjct: 4 CYERLGCFSDDSPWSGITERPLHILPWSPKDVNTRFLLYTNENPNNFQEVA-ADSSSISG 62
Query: 518 SFLIPSHRTFIISHGFLEDGERLWI 542
S + +T I HGF++ GE W+
Sbjct: 63 SNFKTNRKTRFIIHGFIDKGEENWL 87
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 150/275 (54%), Gaps = 27/275 (9%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
S+ +++ ++L ++VN I +W GS YTQA N+R+VG A +L+ L E
Sbjct: 111 SWVTDMCKKLFEVEEVNCICVDWKKGSQATYTQAANNVRVVGAQVAQMLDILLTEYSYPP 170
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
VHLIGHSLGAH++G GS L RITGLDP + F T VRLDP+DA FV
Sbjct: 171 SKVHLIGHSLGAHVAGEAGSKTP-----GLSRITGLDPVEASFESTPEEVRLDPSDADFV 225
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKY 285
D++HTDAAP + G G + +GHLDF+PNGGE+ PGC + + I ++ + G R +
Sbjct: 226 DVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGCKKNALSQI-VDLDGIWAGTRDF 284
Query: 286 LGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKH- 344
+ C+H+RSY+Y+ ES+ F A C ++ +F + CF C C + G A K
Sbjct: 285 VACNHLRSYKYYLESILNPDGFAAYPCTSYKSFESDKCFPCPDQ---GCPQMGHYADKFA 341
Query: 345 -RNSQLQALGMSVYKPVYESKPSKYFLITGDKQPF 378
R S+ Q K+FL TG+ F
Sbjct: 342 GRTSEEQ---------------QKFFLNTGEASNF 361
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 449 LHKPGPLDNKCYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPL 507
L+ G + CY + GC+S PW A R L P P + + LYT NP Q L
Sbjct: 19 LYFQGAMKEVCYEDLGCFSDTEPWGGTAIRPLKILPWSPEKIGTRFLLYTNENPNNFQIL 78
Query: 508 EHKNPETIYNSFLIPSHRTFIISHGFLEDGERLWI 542
+P TI S +T I HGF++ G+ W+
Sbjct: 79 LLSDPSTIEASNFQMDRKTRFIIHGFIDKGDESWV 113
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHR-QVVGG 59
+ Y V++ +S TA+ G+ + + G KG T S+F+ KPG+ H +
Sbjct: 364 WRYGVSITLSGRTAT-------GQIKVALFGNKGNTHQYSIFR-GILKPGSTHSYEFDAK 415
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSELT 113
VG I V F W + N++ L + + + V+ EEK TV +F SE T
Sbjct: 416 LDVGTIDKVKFLWNN----NVINPTLPK-VGATKITVQKGEEK-TVYNFCSEDT 463
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 150/273 (54%), Gaps = 22/273 (8%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
S+ S++ +++ + VN I +W GS YTQAV NIR+VG TA L+ L ++G
Sbjct: 86 SWPSDMCKKMFEVEKVNCICVDWRHGSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSL 145
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
E VH+IGHSLGAH + ++GRITGLDPA P F VRLDP+DA FV
Sbjct: 146 EDVHVIGHSLGAH----TAAEAGRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFV 201
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKY 285
D++HTD++P V G GM + +GHLDF+PNGG+ PGC + + + I G + +G+ +
Sbjct: 202 DVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGCKKNVLSTITDIDG-IWEGIGGF 260
Query: 286 LGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHR 345
+ C+H+RS+EY++ SV F+ C ++D F CF C C K G H
Sbjct: 261 VSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQESKCFPCPAEG---CPKMG-----HY 312
Query: 346 NSQLQALGMSVYKPVYESKPSKYFLITGDKQPF 378
Q + +V + +FL TG+ F
Sbjct: 313 ADQFKGKTSAVEQ--------TFFLNTGESGQF 337
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 459 CYGEYGCYSLKYPWTND-ARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CYG+ GC+S + PW R + P P + + LYT NP Q + P+TI
Sbjct: 4 CYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFLLYTNENPNNFQLITGTEPDTIEA 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLW 541
S +T I HGFL+ E W
Sbjct: 64 SNFQLDRKTRFIIHGFLDKAEDSW 87
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 137/233 (58%), Gaps = 9/233 (3%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
S+ S++ +++ + VN I +W GS YTQAV NIR+VG TA L+ L ++G
Sbjct: 88 SWPSDMCKKMFEVEKVNCICVDWRHGSRAMYTQAVQNIRVVGAETAFLIQALSTQLGYSL 147
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
E VH+IGHSLGAH + ++GRITGLDPA P F VRLDP+DA FV
Sbjct: 148 EDVHVIGHSLGAH----TAAEAGRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFV 203
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKY 285
D++HTD++P V G GM + +GHLDF+PNGG+ PGC + + + I G + +G+ +
Sbjct: 204 DVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGCKKNVLSTITDIDG-IWEGIGGF 262
Query: 286 LGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFG 338
+ C+H+RS+EY++ SV F+ C ++D F CF C C K G
Sbjct: 263 VSCNHLRSFEYYSSSVLNPDGFLGYPCASYDEFQESKCFPCPAE---GCPKMG 312
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 459 CYGEYGCYSLKYPWTND-ARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CYG+ GC+S + PW R + P P + + LYT NP Q + P+TI
Sbjct: 6 CYGQLGCFSDEKPWAGTLQRPVKLLPWSPEDIDTRFLLYTNENPNNFQLITGTEPDTIEA 65
Query: 518 SFLIPSHRTFIISHGFLEDGERLW 541
S +T I HGFL+ E W
Sbjct: 66 SNFQLDRKTRFIIHGFLDKAEDSW 89
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 126/233 (54%), Gaps = 27/233 (11%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
S+ S++ + + + VN I +W GS Y+QA NIR+VG A L+ L +
Sbjct: 86 SWLSDMCKNMFQVEKVNCICVDWKGGSKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAP 145
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
E VH+IGHSLGAH +G G L N +GRITGLDPA+PYF T VRLDP+DA FV
Sbjct: 146 ENVHIIGHSLGAHTAGEAGKRL----NGLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFV 201
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKY 285
D++HTD +P + G GM + +GH+DF+PNGG++ PGC G
Sbjct: 202 DVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCKTG------------------- 242
Query: 286 LGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFG 338
+ C+H RS EY+ S+ F+ C ++D F CF C C K G
Sbjct: 243 ISCNHHRSIEYYHSSILNPEGFLGYPCASYDEFQESGCFPCPAK---GCPKMG 292
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S + PW + R + P DP + + LYT N Q + + TI
Sbjct: 4 CYSHLGCFSDEKPWAGTSQRPIKSLPSDPKKINTRFLLYTNENQNSYQLITATDIATIKA 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWI 542
S + +T I HGF + GE W+
Sbjct: 64 SNFNLNRKTRFIIHGFTDSGENSWL 88
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 327 LRNNGLSCAKFGLNAVKHRNSQLQALGMSVYKPVYESKPSKYFLITGDKQPFCLHFFQAL 386
+ N+G + G + V Q +ALG+ VY P Y + F G + +
Sbjct: 133 MNNHGNYVVRLG-HLVSWMGEQAEALGVEVY-PGYAAA-EILFHEDGSVKGIATNDVGIQ 189
Query: 387 THGGLQDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQTYGIGLKEVWEVK 446
G + TF RG+ELHAKVTIFAEGCHGHL K L +F+LR N PQTYGIGLKE+W +
Sbjct: 190 KDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVID 249
Query: 447 PELHKPG--------PLDNKCYGEYGCYSL 468
+ KPG PLD YG Y L
Sbjct: 250 EKKWKPGRVDHTVGWPLDRHTYGGSFLYHL 279
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 2 LYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGAG 61
+Y V V T REH G +I I G KG+TD + L K F + G++ + V G
Sbjct: 8 IYNVEV----ETGDREHAGTDATITIRITGAKGRTDYLKLDKGSF-EAGSKEQYTVQGFD 62
Query: 62 VGHI 65
VG I
Sbjct: 63 VGDI 66
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 2 LYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGAG 61
+Y V V T REH G +I I G KG+TD + L K F + G++ + V G
Sbjct: 8 IYNVEV----ETGDREHAGTDATITIRITGAKGRTDYLKLDKGSF-EAGSKEQYTVQGFD 62
Query: 62 VGHI 65
VG I
Sbjct: 63 VGDI 66
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 2 LYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGAG 61
+Y V V T REH G +I I G KG+TD + L K F + G++ + V G
Sbjct: 8 IYNVEV----ETGDREHAGTDATITIRITGAKGRTDYLKLDKGSF-EAGSKEQYTVQGFD 62
Query: 62 VGHI 65
VG I
Sbjct: 63 VGDI 66
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 2 LYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFK--EQFYKPGAEHRQVVGG 59
+Y V V T REH G +I I G KG+TD + L K ++ G++ + V G
Sbjct: 8 IYNVEV----ETGDREHAGTDATITIRITGAKGRTDYLKLDKWFHNDFEAGSKEQYTVQG 63
Query: 60 AGVGHI 65
VG I
Sbjct: 64 FDVGDI 69
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 2 LYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFK--EQFYKPGAEHRQVVGG 59
+Y V V T REH G +I I G KG+TD + L K ++ G++ + V G
Sbjct: 375 IYNVEV----ETGDREHAGTDATITIRITGAKGRTDYLKLDKWFHNDFEAGSKEQYTVQG 430
Query: 60 AGVGHI 65
VG I
Sbjct: 431 FDVGDI 436
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 424 FNLRDNACPQTYGIGLKEVWEVKPELHKPGPLDNKCYGEYGCYSLKYPWTN 474
FN ACP+ G+G+++ EV PEL P P G PW+N
Sbjct: 296 FNSPYGACPECSGLGIRK--EVDPELVVPDPDRTLAQGAVA------PWSN 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,733,785
Number of Sequences: 62578
Number of extensions: 879194
Number of successful extensions: 2088
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2006
Number of HSP's gapped (non-prelim): 46
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)