RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2283
(604 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 272 bits (697), Expect = 2e-87
Identities = 110/265 (41%), Positives = 142/265 (53%), Gaps = 44/265 (16%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
S+L + L + D NVIV +WG G++P Y QAV N R+VG A L+ L G+ E V
Sbjct: 55 SDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENV 114
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
HLIGHSLGAH++G+ G L KLGRITGLDPA P FSG + RLDP+DA FVD++
Sbjct: 115 HLIGHSLGAHVAGFAGKRLNG----KLGRITGLDPAGPLFSGADPEDRLDPSDAQFVDVI 170
Query: 230 HTDAAPFVKGGLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCD 289
HTD G LG +PIGH DFYPNGG +QPGC ++ C
Sbjct: 171 HTDG-----GLLGFSQPIGHADFYPNGGRDQPGCP-------------KDILSSDFVACS 212
Query: 290 HIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQL 349
H R+ YF ES+ + C F+A C ++D F AG CF C G C + G +A + R
Sbjct: 213 HQRAVHYFAESILSPCGFVAYPCSSYDEFLAGKCFPC----GSGCVRMGYHADRFR---- 264
Query: 350 QALGMSVYKPVYESKPSKYFLITGD 374
+ K++L T
Sbjct: 265 --------------REGKFYLKTNA 275
Score = 58.0 bits (141), Expect = 3e-09
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 490 KPIYCLYTRHNPTECQPLEHKNPETIYNSFLIPSHRTFIISHGFLEDGERLWI 542
+ LYTR NP Q L +P ++ NS PS T I HG+ GE WI
Sbjct: 2 DVRFLLYTRENPNCPQLLFADDPSSLKNSNFNPSRPTRFIIHGWTSSGEESWI 54
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 249 bits (638), Expect = 6e-78
Identities = 109/269 (40%), Positives = 141/269 (52%), Gaps = 30/269 (11%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
S++ + L + VNVIV +WG+GS+ Y QA N+R+VG A LL L E+ + E V
Sbjct: 91 SDMCKNLFQVEGVNVIVVDWGSGSTTFYRQATLNVRVVGAEVAKLLVELEEELNVSPENV 150
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
HLIGHSLGAH++G G RT KLGRITGLDPA PYF GT + RLDP DA FVD +
Sbjct: 151 HLIGHSLGAHVAGEAGR--RTKGKTKLGRITGLDPAGPYFKGTPELTRLDPGDADFVDAI 208
Query: 230 HTDAAPFVKGGLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCD 289
HTD P G+G + +GH+DF+PNGG QPGC + V +++ C
Sbjct: 209 HTDTRPIPGLGMGTSQRVGHVDFFPNGGSEQPGCQ------------NNVLEGTQFVACA 256
Query: 290 HIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQL 349
H+RS YF ES+ F A C ++D F CF C + C G+ A K
Sbjct: 257 HMRSVRYFAESLLNPRNFPAYPCSSYDEFSNNKCFGCPKG---RCPYMGIYADK------ 307
Query: 350 QALGMSVYKPVYESKPSKYFLITGDKQPF 378
+ Y+L T K PF
Sbjct: 308 -------FDGKTSKLEGDYYLNTNSKSPF 329
Score = 47.8 bits (114), Expect = 1e-05
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 457 NKCYGEYGCYSLKYPWTND--ARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPET 514
CYG GC+ K PW + AR P P ++ + LYT NP CQ + P T
Sbjct: 2 EVCYGLLGCFGDKKPWAGNTLARPAKSLPWQPKFIEVRFLLYTNENPNNCQLITTGLPST 61
Query: 515 IYNSFLIPSHRTFIISHGFLEDGE 538
I NS S +T I HGF + G+
Sbjct: 62 IENSNFNTSKKTRAIIHGFTDKGQ 85
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 154 bits (391), Expect = 3e-41
Identities = 89/269 (33%), Positives = 133/269 (49%), Gaps = 26/269 (9%)
Query: 121 DVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHL 180
NVIV +W + + Y + A +LVG A +N ++ E + VHL+G+SLGAH+
Sbjct: 73 SANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHV 132
Query: 181 SGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIVHTDAAPFVKGG 240
+G GS + K+ RITGLDPA P F ++ L P DA FVD++HT+
Sbjct: 133 AGIAGS----LTKHKVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRS 188
Query: 241 LGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCDHIRSYEYFTES 300
+G+ P+GH+D YPNGG QPGCD + E+G + + + + C H RS F +S
Sbjct: 189 IGIQRPVGHIDIYPNGGTFQPGCDIQETLLVIAEKG--LGNMDQLVKCSHERSIHLFIDS 246
Query: 301 -VNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQLQALGMSVYKP 359
+N P +A C + + F+ G C +C +N C K G K R
Sbjct: 247 LLNEENPSMAYRCSSKEAFNKGLCLSCRKNR---CNKLGYEINKVRT------------- 290
Query: 360 VYESKPSKYFLITGDKQPFCLHFFQALTH 388
+ SK +L T + P+ + +Q H
Sbjct: 291 ---KRSSKMYLKTREMMPYKVFHYQVKVH 316
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 95.3 bits (237), Expect = 5e-23
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDI 228
+H+ GHSLG L+G G LR +L R+ P + + RLDP+DA FVD
Sbjct: 30 IHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNAAF-AEDRLDPSDALFVDR 88
Query: 229 VHTDAAPFVK-GGLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLG 287
+ D + G G P G +FY NGG++QPGC + + + ++ G++ GL
Sbjct: 89 IVNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQPGCCKNVLEAVDIDFGNI--GLSGNGL 146
Query: 288 CDHIRSY 294
CDH+R +
Sbjct: 147 CDHLRYF 153
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 47.1 bits (112), Expect = 2e-05
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 394 TFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQTYGIGLKEVWEVKPE 448
A E+ AKV I A+G + L + L + P+ Y IG+KEV EV +
Sbjct: 132 VRAGDDEVRAKVVIDADGVNSALARKLG-----LKDRKPEDYAIGVKEVIEVPDD 181
>gnl|CDD|238857 cd01759, PLAT_PL, PLAT/LH2 domain of pancreatic triglyceride
lipase. Lipases hydrolyze phospholipids and
triglycerides to generate fatty acids for energy
production or for storage and to release inositol
phosphates that act as second messengers. The central
role of triglyceride lipases is in energy production.
The proposed function of PLAT/LH2 domains is to mediate
interaction with lipids or membrane bound proteins.
Length = 113
Score = 39.7 bits (93), Expect = 6e-04
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 3 YRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEH-RQVVGGAG 61
Y+V+V +S G + ++G KG T +FK KPG + +
Sbjct: 3 YKVSVTLSGKKKVT------GTILVSLYGNKGNTRQYEIFKGTL-KPGNTYSAFIDVDVD 55
Query: 62 VGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSELT 113
VG +T V F W + + +NI ++ A + V+S ++ + V +F S T
Sbjct: 56 VGPLTKVKFIWNNNV-INITLPKVGA----EKITVQSGKDGK-VFNFCSSET 101
>gnl|CDD|238853 cd01755, PLAT_lipase, PLAT/ LH2 domain present in connection with a
lipase domain. This family contains two major subgroups,
the lipoprotein lipase (LPL) and the pancreatic
triglyceride lipase. LPL is a key enzyme in catabolism
of plasma lipoprotein triglycerides (TGs). The central
role of triglyceride lipases is in energy production. In
general, PLAT/LH2 domain's proposed function is to
mediate interaction with lipids or membrane bound
proteins.
Length = 120
Score = 39.2 bits (92), Expect = 0.001
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEH-RQVVGG 59
+ Y+V V +S G F++ ++GTKG+T+ + + + KP + +
Sbjct: 1 WHYQVKVHLSGKKNLEVDG----TFTVSLYGTKGETEQLPIVLGEL-KPNKTYSFLIDTE 55
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSE 111
+G + V F+WE+ +N + + + V+S E Q +F S+
Sbjct: 56 VDIGDLLKVKFKWENN-VINSNSGETLPKLGARKIRVKSGET-QKKFTFCSQ 105
>gnl|CDD|239228 cd02899, PLAT_SR, Scavenger receptor protein. A subfamily of PLAT
(Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2
(Lipoxygenase homology 2) domain. It consists of an
eight stranded beta-barrel. The domain can be found in
various domain architectures, in case of lipoxygenases,
alpha toxin, lipases and polycystin, but also as a
single domain or as repeats.The putative function of
this domain is to facilitate access to sequestered
membrane or micelle bound substrates. This subfamily
contains Toxoplasma gondii Scavenger protein TgSR1.
Length = 109
Score = 35.5 bits (82), Expect = 0.013
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 9 ISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGAGVGHITDV 68
S T + G G I + G+ G+++ +L + FY PG+ R A VG I +
Sbjct: 5 ASVQTGKDKEAGTNGTIEITLLGSSGRSNPKTL-SQGFY-PGSLKRIRFRAADVGDINAI 62
Query: 69 LFR 71
+
Sbjct: 63 ILS 65
>gnl|CDD|114813 pfam06115, DUF956, Domain of unknown function (DUF956). Family of
bacterial sequences with undetermined function.
Length = 118
Score = 29.5 bits (67), Expect = 1.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 265 QGMFAFIHLERGSVVKGLRKYLGCDHIR 292
G F F + G V++ +R+++G D +
Sbjct: 77 NGKFLFASKDSGKVLRAIREHVGNDKVV 104
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 30.4 bits (69), Expect = 2.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 41 LFKEQFYKPGAEHRQVVGGAGVGHITDVLFRWEH-EISVNILTWRLEALIHVSSVLVESL 99
F E FY PG H ++ G G+ R H E+S+ + A + S+V+ E L
Sbjct: 137 EFYENFYSPG--HVPILIGRGIRE------RRGHTELSIALAQA---AGLEPSAVIAEML 185
Query: 100 EEKQ 103
+EK
Sbjct: 186 DEKL 189
>gnl|CDD|163574 TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765
family. This model describes a sharply distinctive
clade of proteins within the larger family of
flavoproteins described by pfam03486 and TIGRFAMs model
TIGR00275. The function is unknown.
Length = 376
Score = 30.2 bits (68), Expect = 3.0
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 154 LLNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTE 213
L N LR+ +G+ L+ + +T+ L L + G P D S T
Sbjct: 262 LSNHLRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPL-PLDGTRPIDEAIS-TA 319
Query: 214 SIVRLDPTDATF 225
VR D D +
Sbjct: 320 GGVRQDALDESL 331
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 29.4 bits (66), Expect = 5.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 123 NVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSG 182
N + +G Y+ AV +L Y+ VL T + V+LIGHS+G S
Sbjct: 90 NGVYAFELSGGDGTYSLAVRGEQLFAYVDEVLAKT-------GAKKVNLIGHSMGGLDSR 142
Query: 183 YVGSTLR 189
Y L
Sbjct: 143 YYLGVLG 149
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 29.2 bits (65), Expect = 6.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 401 LHAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQTYGIGLKEVWEVKPEL 449
L A V I A+G + L +SL + + P Y +G+KEV + PE
Sbjct: 151 LEANVVILADGVNSMLGRSL----GMVPASDPHHYAVGVKEVIGLTPEQ 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.434
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,944,597
Number of extensions: 3046105
Number of successful extensions: 2117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2103
Number of HSP's successfully gapped: 24
Length of query: 604
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 502
Effective length of database: 6,413,494
Effective search space: 3219573988
Effective search space used: 3219573988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)