RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2283
(604 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 277 bits (710), Expect = 3e-87
Identities = 102/277 (36%), Positives = 152/277 (54%), Gaps = 22/277 (7%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
S++ +++L + N I +W +G+ YTQAV NIR+VG TA L+ L E+ E V
Sbjct: 89 SDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNIRIVGAETAYLIQQLLTELSYNPENV 148
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
H+IGHSLGAH +G G L ++GR+TGLDPA+P F VRLDP+DA FVD++
Sbjct: 149 HIIGHSLGAHTAGEAGRRL----EGRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVI 204
Query: 230 HTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTDA+P + G GM + +GH+DF+PNGG+ PGC + F+ G +G + YL C
Sbjct: 205 HTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFSTFIDINGI-WQGAQDYLAC 263
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQ 348
+H++S+EY++ S+ F+A CD++D F CF C C K G A +++
Sbjct: 264 NHLKSFEYYSSSILNPDGFLAYPCDSYDKFQENGCFPCPAG---GCPKMGHYADQYKEKT 320
Query: 349 LQALGMSVYKPVYESKPSKYFLITGDKQPFCLHFFQA 385
+FL TG+ + ++
Sbjct: 321 SAVEQ-------------TFFLNTGESGDYTSWRYRV 344
Score = 86.6 bits (214), Expect = 4e-18
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S PW R L P P + + LYT NP Q + ++ TI +
Sbjct: 4 CYTPLGCFSDDKPWAGTLQRPLKSLPWSPEEVNTRFLLYTNKNPDSYQLITARDVATIKS 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S S +T + HGF + GE W
Sbjct: 64 SNFQSSRKTHFVIHGFRDRGEDSWPS 89
Score = 55.8 bits (134), Expect = 2e-08
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVV-GG 59
+ YRV++ ++ S + G + + G+ G + +FK +P + + V
Sbjct: 340 WRYRVSITLAGSGKAN------GYLKVTLRGSNGNSKQYEIFKGSL-QPDSSYTLDVDVN 392
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTV 105
+G I +V F W +N+ +L S + V+S +
Sbjct: 393 FIIGKIQEVKFVWNKT-VLNLSKPQL----GASRITVQSGADGTEY 433
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 274 bits (702), Expect = 4e-86
Identities = 99/276 (35%), Positives = 148/276 (53%), Gaps = 22/276 (7%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
S + + + + VN I +W +GS Y+QA N+R+VG A L+ L+ V
Sbjct: 88 STMCQNMFKVESVNCICVDWKSGSRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNV 147
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
H+IGHSLG+H +G G N +GRITGLDPA+P F GT +VRLDP+DA FVD++
Sbjct: 148 HIIGHSLGSHAAGEAGRRT----NGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVI 203
Query: 230 HTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTD APF+ G GM + GHLDF+PNGG+ PGC + + + I ++ + +G R + C
Sbjct: 204 HTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQI-VDIDGIWQGTRDFAAC 262
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQ 348
+H+RSY+Y+T+S+ F C ++ +F A CF C C + G A +
Sbjct: 263 NHLRSYKYYTDSILNPDGFAGFSCASYSDFTANKCFPCSSE---GCPQMGHYADR----- 314
Query: 349 LQALGMSVYKPVYESKPSKYFLITGDKQPFCLHFFQ 384
+ + ++L TGD F ++
Sbjct: 315 --------FPGRTKGVGQLFYLNTGDASNFARWRYR 342
Score = 85.1 bits (210), Expect = 1e-17
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S PW R L P P + + LYT NP Q + +P TI +
Sbjct: 4 CYERLGCFSDDSPWAGIVERPLKILPWSPEKVNTRFLLYTNENPDNFQEIVA-DPSTIQS 62
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S +T I HGF++ GE W+
Sbjct: 63 SNFNTGRKTRFIIHGFIDKGEESWLS 88
Score = 50.4 bits (120), Expect = 1e-06
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVV-GG 59
+ YRV V +S + G + + G KG + +F+ KP +
Sbjct: 339 WRYRVDVTLSGKKVT-------GHVLVSLFGNKGNSRQYEIFQGTL-KPDNTYSNEFDSD 390
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSF 108
VG + V F W + + +N+ ++ S + VE + +V +F
Sbjct: 391 VEVGDLEKVKFIWYNNV-INLTLPKV----GASKITVERND--GSVFNF 432
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 270 bits (690), Expect = 2e-84
Identities = 101/277 (36%), Positives = 144/277 (51%), Gaps = 22/277 (7%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
++ +++ + VN I +W GS YTQA N R+VG A L+ L E+G E V
Sbjct: 89 LDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENV 148
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
HLIGHSLGAH+ G G L +GRITGLDPA+P F G VRLDP+DA FVD++
Sbjct: 149 HLIGHSLGAHVVGEAGRRL----EGHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVI 204
Query: 230 HTDAAPFV-KGGLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTD+AP + G GM + +GHLDF+PNGG+ PGC + + + I G +G + ++ C
Sbjct: 205 HTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDINGI-WEGTQNFVAC 263
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQ 348
+H+RSY+Y+ S+ F+ C +++ F +CF C C K G A +
Sbjct: 264 NHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEE---GCPKMGHYADQFEGKT 320
Query: 349 LQALGMSVYKPVYESKPSKYFLITGDKQPFCLHFFQA 385
+L TGD F ++
Sbjct: 321 ATVEQ-------------TVYLNTGDSGNFTRWRYKV 344
Score = 89.4 bits (221), Expect = 4e-19
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CYG GC+S PW R L FP P + + LYT NP Q + P+TI
Sbjct: 4 CYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKF 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S +T I HGF++ GE W+
Sbjct: 64 SNFQLDRKTRFIVHGFIDKGEDGWLL 89
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 262 bits (670), Expect = 2e-81
Identities = 97/276 (35%), Positives = 134/276 (48%), Gaps = 40/276 (14%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
S++ + + + VN I +W GS Y+QA NIR+VG A L+ L + E V
Sbjct: 89 SDMCKNMFQVEKVNCICVDWKGGSKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENV 148
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
H+IGHSLGAH +G G L N +GRITGLDPA+PYF T VRLDP+DA FVD++
Sbjct: 149 HIIGHSLGAHTAGEAGKRL----NGLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVI 204
Query: 230 HTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTD +P + G GM + +GH+DF+PNGG++ PGC + C
Sbjct: 205 HTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCK-------------------TGISC 245
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQ 348
+H RS EY+ S+ F+ C ++D F CF C C K G A ++
Sbjct: 246 NHHRSIEYYHSSILNPEGFLGYPCASYDEFQESGCFPCPAK---GCPKMGHFADQYPGKT 302
Query: 349 LQALGMSVYKPVYESKPSKYFLITGDKQPFCLHFFQ 384
+FL TG F ++
Sbjct: 303 NAVEQ-------------TFFLNTGASDNFTRWRYK 325
Score = 91.2 bits (226), Expect = 8e-20
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY GC+S + PW + R + P DP + + LYT N Q + + TI
Sbjct: 4 CYSHLGCFSDEKPWAGTSQRPIKSLPSDPKKINTRFLLYTNENQNSYQLITATDIATIKA 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S + +T I HGF + GE W+
Sbjct: 64 SNFNLNRKTRFIIHGFTDSGENSWLS 89
Score = 52.3 bits (125), Expect = 3e-07
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVG-G 59
+ Y+V+V +S + G + + G KG + +FK KP + H
Sbjct: 322 WRYKVSVTLSGKKVT-------GHILVSLFGNKGNSKQYEIFKGTL-KPDSTHSNEFDSD 373
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEK 102
VG + V F W + + +N R+ S ++VE+ K
Sbjct: 374 VDVGDLQMVKFIWYNNV-INPTLPRV----GASKIIVETNVGK 411
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 259 bits (663), Expect = 2e-80
Identities = 103/276 (37%), Positives = 143/276 (51%), Gaps = 23/276 (8%)
Query: 110 SELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYV 169
++ + + ++VN I +W GS YTQA N+R+VG A +L+ L V
Sbjct: 89 LDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQV 148
Query: 170 HLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIV 229
LIGHSLGAH++G GS LGRITGLDP + F GT VRLDPTDA FVD++
Sbjct: 149 QLIGHSLGAHVAGEAGSRTP-----GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVI 203
Query: 230 HTDAAPFV-KGGLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGC 288
HTDAAP + G G + +GHLDF+PNGGE PGC + + I ++ + +G R ++ C
Sbjct: 204 HTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQI-VDLDGIWEGTRDFVAC 262
Query: 289 DHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQ 348
+H+RSY+Y++ES+ F + C ++ F + CF C C + G A K
Sbjct: 263 NHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQ---GCPQMGHYADKFAVKT 319
Query: 349 LQALGMSVYKPVYESKPSKYFLITGDKQPFCLHFFQ 384
KYFL TGD F +
Sbjct: 320 SDETQ-------------KYFLNTGDSSNFARWRYG 342
Score = 89.7 bits (222), Expect = 3e-19
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY + GC+S PW A R L P P + + LYT NP Q L +P TI
Sbjct: 4 CYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGA 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S +T I HGF++ GE W+
Sbjct: 64 SNFQTDKKTRFIIHGFIDKGEENWLL 89
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 90.6 bits (225), Expect = 3e-19
Identities = 58/136 (42%), Positives = 71/136 (52%), Gaps = 22/136 (16%)
Query: 348 QLQALGMSVY------KPVYESKPSKYFLITGDKQPFCLHFFQALTHGGLQDTFARGMEL 401
Q +ALG+ VY + ++ S + T D G + TF RG+EL
Sbjct: 153 QAEALGVEVYPGYAAAEILFHEDGSVKGIATND--------VGIQKDGAPKTTFERGLEL 204
Query: 402 HAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQTYGIGLKEVWEVKPELHKPG-------- 453
HAKVTIFAEGCHGHL K L +F+LR N PQTYGIGLKE+W + + KPG
Sbjct: 205 HAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGW 264
Query: 454 PLDNKCYGEYGCYSLK 469
PLD YG Y L
Sbjct: 265 PLDRHTYGGSFLYHLN 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-07
Identities = 63/384 (16%), Positives = 101/384 (26%), Gaps = 161/384 (41%)
Query: 2 LYRVTVFISNSTASRE-------HGGEVGKFSI-EIHGTKGKTDDISLFKEQFYKPGAEH 53
LY+ S A+++ H + FSI +I I F
Sbjct: 1635 LYK------TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-HF----------- 1676
Query: 54 RQVVGGAGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSELT 113
GG I + E V+ + + + + E T +F+SE
Sbjct: 1677 ----GGEKGKRIRENYSAMIFETIVDGKLKTEK--------IFKEINEHSTSYTFRSE-- 1722
Query: 114 RQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGY-MTAVLLNTLRREVGIRTEYVHLI 172
+ LL S+ +TQ A + L+ L + G+
Sbjct: 1723 KGLL---------------SATQFTQ-PA-LTLMEKAAFEDL-----KSKGLIPADATFA 1760
Query: 173 GHSLG-----AHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVD 227
GHSLG A L+ + V+
Sbjct: 1761 GHSLGEYAALASLADV----------------------------------MSIESL--VE 1784
Query: 228 IVH------TDAAPFVKGGLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKG 281
+V A P + LG + GM A + G V
Sbjct: 1785 VVFYRGMTMQVAVP--RDELGRS-------------------NYGMIA---INPGRVAAS 1820
Query: 282 LRKYLGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRN---------NGL 332
+ + +Y E V R ++ VE N +N N L
Sbjct: 1821 ----FSQEAL---QYVVERVGKRTGWL-VE--------IVN-YNV-ENQQYVAAGDLRAL 1862
Query: 333 SCAKFGLNAVKHRNSQLQALGMSV 356
LN +K + + L S+
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 49.7 bits (118), Expect = 3e-06
Identities = 112/681 (16%), Positives = 187/681 (27%), Gaps = 227/681 (33%)
Query: 11 NSTASR----EHGGEVGKFSIEIHGTKGKTDDI--SLF------KEQFYKPGAEHRQVVG 58
++ ++R HG S+E + + F +EQF K E
Sbjct: 2 DAYSTRPLTLSHG------SLEH------VLLVPTASFFIASQLQEQFNKILPEP----- 44
Query: 59 GAGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKS---ELTRQ 115
T+ + + L + L +VSS LVE + Q E
Sbjct: 45 -------TEGFAADDEPTTPAELVGKF--LGYVSS-LVEPSKVGQFDQVLNLCLTEFENC 94
Query: 116 LLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHS 175
L +D++ + + + I+ Y+TA +R ++ S
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIK--NYITA--RIMAKRPFDKKSN-------S 143
Query: 176 --LGAHLSG----YV-----GST------LRTVYNLKLGRITGLDPADPYFSGTES-IVR 217
A G G+T LR +Y Y I
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-------------QTYHVLVGDLIKF 190
Query: 218 LDPTDATFVDIVHTDAAPFVKGGLGMGEPIGHLDFYP--NGGENQPGCDQ---------- 265
T + + F +G L+ N P D
Sbjct: 191 SAETLSELIRTTLDAEKVFTQG----------LNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 266 -GMFAFIHLERGSVVKGLRKYLGCDHIRSYEYFTES-VNARCPFIAVECDTWDNFHAGNC 323
G+ H + + G +++ ++ V A IA E D+W++F +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIA-ETDSWESFFV-SV 296
Query: 324 FNCLRNNGLSCAKF--GLNAVK-HRNSQLQALGMSVYKPVYESKPSKYFLITGDKQPFCL 380
+ F G+ + + N+ L + E PS I+
Sbjct: 297 RKAIT------VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN------- 343
Query: 381 HFFQALTHGGLQDTFARGMELHAKVTIFAEGCHGHLTKSLS-SRFNLRDNAC----PQT- 434
LT +QD + H K + S N N PQ+
Sbjct: 344 -----LTQEQVQD------------YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 435 YGIGLKEVWEVKPELHKPGPLDNKCYGEYGCYSLKYPWTNDARQLSQFPQDPSVMKPIYC 494
YG+ L L K K P D Q S+ P S K +
Sbjct: 387 YGLNL--------TLRK----------------AKAPSGLD--Q-SRIPF--SERKLKF- 416
Query: 495 LYTRHNPTECQPLEHKNPETIYNS-FLIPSHRTF---IISHGFLEDGERLWIKFYKPG-A 549
R P P ++S L+P+ ++ + + + + I Y
Sbjct: 417 -SNRFLPVAS-P---------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 550 EHRQVVGGAGVGHITDVLFR----WEHEISVNILTW----------RLEALIH------- 588
+V+ G+ I D + R WE T L L H
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-THILDFGPGGASGLGVLTHRNKDGTG 524
Query: 589 VSSVLVESLEE--------KQ 601
V ++ +L+ KQ
Sbjct: 525 VRVIVAGTLDINPDDDYGFKQ 545
Score = 34.6 bits (79), Expect = 0.12
Identities = 58/324 (17%), Positives = 91/324 (28%), Gaps = 125/324 (38%)
Query: 347 SQLQALGMSVY------KPVYE----SKPSKY-FLITG--DKQPFCL--HF--------- 382
SQ Q +GM +Y + V+ Y F I P L HF
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 383 --FQALTHGGLQDTFARGMELHAKVTIFAEGCHGHLTKSLSS-RFNLRDNACPQTY---- 435
+ A+ +T G K IF E + + +S F T
Sbjct: 1686 ENYSAMIF----ETIVDGKLKTEK--IFKE-----INEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 436 GIGLKEV--WEVKPELHKPGPLDNKCY------GEY-------GCYSLKYPWTNDA---- 476
+ L E +E L G + GEY S++
Sbjct: 1735 ALTLMEKAAFED---LKSKGLIPADATFAGHSLGEYAALASLADVMSIE-----SLVEVV 1786
Query: 477 --R-QLSQF--PQDPSV-----MKPIYCLYTRHNPTECQPLEHKNPETIYNSFLIPSHRT 526
R Q P+D M I NP + SF + +
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAI------------------NPGRVAASFSQEALQY 1828
Query: 527 FI--ISHGFLEDGERLWIKFYKPGA----EHRQVV-GG--AGVGHITDVLFRWEHEISV- 576
+ + G + I E++Q V G + +T+VL + I +
Sbjct: 1829 VVERVGK---RTGWLVEI------VNYNVENQQYVAAGDLRALDTVTNVL----NFIKLQ 1875
Query: 577 NILTWRLEALIHVSSVLVESLEEK 600
I L+ S+ +E +E
Sbjct: 1876 KIDIIELQK-----SLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 83/541 (15%), Positives = 148/541 (27%), Gaps = 156/541 (28%)
Query: 73 EHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSELTRQLLIKDDVNVIVNNWGAG 132
+ E + ++ + L V++ + K ++ + +L K++++ I+
Sbjct: 8 DFETGEHQYQYK-DILSVFEDAFVDNFDCKDV-----QDMPKSILSKEEIDHIIM----- 56
Query: 133 SSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVY 192
S AV+ L TL + + E V +V LR Y
Sbjct: 57 -SKD---AVSGTLR-------LFWTLLSK---QEEMVQK-----------FVEEVLRINY 91
Query: 193 NLKLGRITGLDPADPYFSGTESIVRLDPTDA--TFVDIVHTDAAPFVKGGLGMGEPIGHL 250
+ I TE T D ++ D F K + +P L
Sbjct: 92 KFLMSPIK-----------TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 251 DFYPNGGEN-QPGCD---QGMFAFIHLERG-SVVKGLRKYLGCDHIRSYEYFTESVNARC 305
+P + G+ G + + D SY+ V +
Sbjct: 141 R---QALLELRPAKNVLIDGVLGS-----GKTW-------VALDVCLSYK-----VQCKM 180
Query: 306 PF----IAV-ECDT--------WDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQLQAL 352
F + + C++ + + R++ S K +++++ +L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 353 GMSVYKP-------VYESKPSKYF-------LITGDKQPFCLHFFQALTHGGLQDTFARG 398
Y+ V +K F L T KQ TH L +
Sbjct: 241 --KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMT 297
Query: 399 MELHAKVTIFAEGCHGHLTKSLSSRFN-LRDNAC---PQTYG-IGLKEVWEVKPELHKPG 453
+ ++ K L R L P+ I E + G
Sbjct: 298 LTPDEVKSLLL--------KYLDCRPQDLPREVLTTNPRRLSIIA---------ESIRDG 340
Query: 454 PLDNKCYGEYGCY--------SLKYPWTNDARQ----LSQFPQDPSVMKPIYCLYTRHNP 501
+ C SL + R+ LS FP + + L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 502 TECQPLEHKNPETIYNSF----LI---PSHRTFIISHGFLEDGERLWIKFYKPGAEHRQV 554
+ N L+ P T I +LE L +K A HR +
Sbjct: 401 KSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLE----LKVKLENEYALHRSI 449
Query: 555 V 555
V
Sbjct: 450 V 450
Score = 42.9 bits (100), Expect = 3e-04
Identities = 63/410 (15%), Positives = 129/410 (31%), Gaps = 95/410 (23%)
Query: 249 HLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCDHIRSYEYFTESV--NARCP 306
H+DF GE+Q + F C + + +S+
Sbjct: 6 HMDF--ETGEHQYQYKDILSVF--------EDAFVDNFDCKDV---QDMPKSILSKEEID 52
Query: 307 FIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRN-----SQLQA--LGMSVYKP 359
I + D F L + + + V N S ++ S+
Sbjct: 53 HIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 360 VYESKPSKYFLITGDKQPFCLHF------FQALTHGGLQDTFARGMELHA-----KVTIF 408
+Y + + + D Q F + + L L+ A+ + + K +
Sbjct: 111 MYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 409 AEGCHGHLTKSLSSRF-------NLRDNACPQTYGIGLKEVW-EVKPELHKPGPLDNKCY 460
+ C L+ + + NL++ P+T L+++ ++ P D+
Sbjct: 168 LDVC---LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSN 222
Query: 461 GEYGCYSLKYPWTNDARQLSQFP---------QDPSVMKP--IYC---LYTRHNPTECQP 506
+ +S++ + + Q+ + C L TR
Sbjct: 223 IKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF------- 274
Query: 507 LEHKNPETIYNSFLIPSHRTFI----ISHGFLED-GERLWIKF--YKPGAEHRQVVGG-- 557
+ + + FL + T I S D + L +K+ +P R+V+
Sbjct: 275 ------KQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 558 ---AGVG-HITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTF 603
+ + I D L W++ VN +L +I S ++E E ++ F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNC--DKLTTIIESSLNVLEPAEYRKMF 375
Score = 33.3 bits (75), Expect = 0.28
Identities = 68/557 (12%), Positives = 132/557 (23%), Gaps = 214/557 (38%)
Query: 56 VVGGAGVGH---ITDVL--FRWEHEISVNILTW--------------RLEALIHVSSVLV 96
+ G G G DV ++ + ++ I W L+ L++
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 97 ESLEE-----KQTVVSFKSELTRQ---------LLIKDDVNVIVNNWGAGSSPPYTQAVA 142
S + K + S ++EL R LL+ +V
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV------Q------------- 254
Query: 143 NIRLVGYMTA---VLLNTLRREV-----GIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNL 194
N + +LL T ++V T ++ L HS+ T V +L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--------TPDEVKSL 306
Query: 195 KLGRITGLDPADPYFSGTESIVRLDPTDATFVDIVHTDAAPFVKGGLG--MGEPIGHLDF 252
L + P D L P + P + + + + D
Sbjct: 307 -LLKYLDCRPQD-----------L-PREV-------LTTNPRRLSIIAESIRDGLATWDN 346
Query: 253 YPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCDHIRSYEY-----FTESVNARCPF 307
+ CD+ L +++ L R + F S + P
Sbjct: 347 WK-----HVNCDK-------LTT--IIESSLNVLEPAEYRKM-FDRLSVFPPSAHI--P- 388
Query: 308 IAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQLQALGMSVYKPVYESKPSK 367
+ W + + + K+ L K K S
Sbjct: 389 TILLSLIWFDVIKSDVMVVVN----KLHKYSL-VEKQP------------------KEST 425
Query: 368 YFLITGDKQPFCLHFFQALTHGGLQDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLR 427
+ + + +A H +S+ +N+
Sbjct: 426 ISI-----------------PSIYLELKVKLENEYAL--------H----RSIVDHYNIP 456
Query: 428 DNACPQTYGIGLKEVWEVKPELHKPGPLDNKCYGEYGCYSLKYPWTNDARQLSQFPQDPS 487
P LD Y + + LK +++ F
Sbjct: 457 KTFDSDDLI---------------PPYLDQYFY-SHIGHHLKN--IEHPERMTLFRM--- 495
Query: 488 VMKPIYCLYT---------RHNPTECQPLEHKNPE----TIYNSFLIPSHRTFIISHGFL 534
++ RH+ T Y ++ + + +
Sbjct: 496 -------VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY---ERLV 545
Query: 535 EDGERLWIKFYKPGAEH 551
+ F E+
Sbjct: 546 NA----ILDFLPKIEEN 558
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 42.9 bits (101), Expect = 3e-04
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 398 GMELHAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQTYGIGLKEVWEVKPELHKPGPLD 456
+ +++KV + A G L + ++ + + +EV K ++ L
Sbjct: 146 ELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLR 204
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic
metabolism, dioxygenase, fatty ACI biosynthesis, heme,
iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura
homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A
Length = 696
Score = 39.1 bits (90), Expect = 0.004
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGA 60
+Y V V T REH G +I I G KG+TD + L K F G++ + V G
Sbjct: 7 AIYNVEVE----TGDREHAGTDATITIRITGAKGRTDYLKLDKGSFEA-GSKEQYTVQGF 61
Query: 61 GVGHITDVLFRWEHE-ISVNILTWRLEALI 89
VG I + + W + +I
Sbjct: 62 DVGDIQLIELHSDGGGYWSGDPDWFVNRVI 91
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 34.0 bits (77), Expect = 0.083
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 155 LNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTES 214
L+TL E +L+ HSLG L+ + G+ + +
Sbjct: 53 LDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLR-----AALGGIILVSGFAKSLPT 107
Query: 215 IVRLDPTDATFVDIVHTDAAPF 236
+ LD D +
Sbjct: 108 LQMLDEFTQGSFDHQKIIESAK 129
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.32
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 18/42 (42%)
Query: 101 EKQTVVSFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVA 142
EKQ + ++ L L DD S+P A+A
Sbjct: 18 EKQALKKLQASLK---LYADD-----------SAP----ALA 41
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 30.7 bits (69), Expect = 1.2
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 152 AVLLNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADP 207
+ + ++ L HS+G G+ + + GL+P
Sbjct: 97 VNAILMIFEHFKFQS--YLLCVHSIG----GFAALQIMNQSSKACLGFIGLEPTTV 146
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 30.4 bits (69), Expect = 1.5
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 150 MTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYF 209
++ T++ V L+G+SLG G + + G +F
Sbjct: 68 AVEMIEQTVQ-AHVTSEVPVILVGYSLG----GRLIMHGLAQGAFSRLNLRGAIIEGGHF 122
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 30.3 bits (68), Expect = 2.0
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 135 PPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNL 194
P QA +R G+ TA+L NT + R L+ L H + S
Sbjct: 103 RPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLM-CELKMHFDFLIESCQ------ 155
Query: 195 KLGRITGLDPADP-YFSGTESIVRLDPTDATFVDIVHTDAAPFVKGGLGMG 244
G+ +P + ++ P++ F+D D +K +G
Sbjct: 156 -----VGMVKPEPQIYKFLLDTLKASPSEVVFLD----DIGANLKPARDLG 197
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 29.9 bits (68), Expect = 2.1
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 124 VIV-NNWGAGSSPPYTQAVANI-RLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLS 181
V+ + G G++P +I ++ + L GI ++GH+LG
Sbjct: 44 VVCYDQRGTGNNPDTLAEDYSIAQMAAELHQAL-----VAAGIEH--YAVVGHALG---- 92
Query: 182 GYVG 185
VG
Sbjct: 93 ALVG 96
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 29.9 bits (68), Expect = 2.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 20/67 (29%)
Query: 124 VIV-NNWGAGSSP----PYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGA 178
V+ + G G+S PYT A RL + +L + +R H +G SLG
Sbjct: 56 VLRYDARGHGASSVPPGPYTLA----RLGEDVLELL-----DALEVRR--AHFLGLSLG- 103
Query: 179 HLSGYVG 185
G VG
Sbjct: 104 ---GIVG 107
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 29.2 bits (65), Expect = 2.7
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 155 LNTLRREVGIRTEYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTES 214
+ +RRE+ + T+ V LIGHS GA + +V + + + + PA+P +
Sbjct: 62 VLAIRRELSVCTQPVILIGHSFGALAACHVVQQGQE----GIAGVMLVAPAEPMRFEIDD 117
Query: 215 IVRLDPTDATFVDIVHTD 232
++ P + +
Sbjct: 118 RIQASPLSVPTLTFASHN 135
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 29.5 bits (67), Expect = 2.8
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 20/67 (29%)
Query: 124 VIV-NNWGAGSSP----PYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGA 178
V+ + G G S PYT +L G + ++ + I + G S+G
Sbjct: 55 VLRYDTRGHGHSEAPKGPYTIE----QLTGDVLGLM-----DTLKIAR--ANFCGLSMG- 102
Query: 179 HLSGYVG 185
G G
Sbjct: 103 ---GLTG 106
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 29.3 bits (66), Expect = 3.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 152 AVLLNTLRREVGIRTEYVHLIGHSLGAHLS 181
L+ + +G R L GHS G +L+
Sbjct: 76 ETLIEAIEEIIGARR--FILYGHSYGGYLA 103
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A
{Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Length = 691
Score = 29.5 bits (65), Expect = 3.8
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGA 60
Y VTV T S+EH G + + G+ G ++ L K F + + V
Sbjct: 22 PSYTVTVA----TGSQEHAGTDDYIYLSLVGSAGCSEKHLLDKGSFERGAVDSYDVTVDE 77
Query: 61 GVGHITDVLFRWEHEISVNILTWRLE 86
+G I V + W L+
Sbjct: 78 ELGEIQLVRIE--KRKYGSNDDWYLK 101
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 29.2 bits (66), Expect = 4.2
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 129 WGAGSSPPYTQAVANIR-LVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLS 181
G + ++ V +GI H+IG SLG +
Sbjct: 102 IGDKNKSIPENVSGTRTDYANWLLDVF-----DNLGIEK--SHMIGLSLGGLHT 148
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 29.1 bits (64), Expect = 4.5
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 128 NWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSGYV 184
+ + S Q + + ++ ++ G V ++ HS+G +S
Sbjct: 91 TYLSSSEQGSAQYNYHSSTKYAIIKTFIDKVKAYTG--KSQVDIVAHSMGVSMSLAT 145
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 28.8 bits (65), Expect = 4.7
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 133 SSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLS 181
S P T + VG +L + GI H++G+S+G ++
Sbjct: 72 SEYPETYPGHIMSWVGMRVEQILGLMN-HFGIEK--SHIVGNSMGGAVT 117
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 28.9 bits (65), Expect = 5.1
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 15/52 (28%)
Query: 130 GAGSS---PPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGA 178
G G S PPY R + + A++ G + G S GA
Sbjct: 59 GRGDSGDTPPYAVE----REIEDLAAII-----DAAGGA---AFVFGMSSGA 98
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 28.6 bits (64), Expect = 5.9
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 5 VTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGAGVGH 64
T I + + E G + I GT G T ++ + + G H + GV H
Sbjct: 251 TTGMIHVNWLTPEGMPTWGDGRLFIVGTSG-TIEVRKTVDLAGREGGNHLFLADRNGVEH 309
Query: 65 I 65
I
Sbjct: 310 I 310
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 28.5 bits (64), Expect = 6.4
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 130 GAGSSPPYTQAVANIRLVGYMTAVL---LNTLRREVGIRTEYVHLIGHSLGAHLS 181
G+G S Q + L L +G+ E L+ H GA ++
Sbjct: 62 GSGRSLELPQDPRL-----FTVDALVEDTLLLAEALGV--ERFGLLAHGFGAVVA 109
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 27.8 bits (62), Expect = 6.9
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 134 SPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSGYV 184
+ + G + + + + E G + V ++ HS+G + Y
Sbjct: 38 AVDFWDKTGTNYNNGPVLSRFVQKVLDETGAKK--VDIVAHSMGGANTLYY 86
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 28.3 bits (64), Expect = 7.5
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
TGL DPYFSGT
Sbjct: 150 TGL-LLDPYFSGT 161
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 28.3 bits (64), Expect = 7.7
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
TGL DPYFSGT
Sbjct: 126 TGL-LFDPYFSGT 137
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 28.3 bits (64), Expect = 7.7
Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
TGL D YFS T
Sbjct: 129 TGL-VIDAYFSAT 140
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 28.3 bits (64), Expect = 7.8
Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
TGL DPYF+GT
Sbjct: 130 TGL-LLDPYFAGT 141
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 28.1 bits (63), Expect = 7.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 169 VHLIGHSLGAHLS 181
V L+G++LG +
Sbjct: 108 VPLVGNALGGGTA 120
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 28.0 bits (63), Expect = 7.9
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 119 KDDVNVI-VNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVHLIGHSLG 177
D+ +VI ++ G G N + LL+ + + ++ + L G+S+G
Sbjct: 40 TDNYHVITIDLPGHGEDQSSMDETWNFDYI----TTLLDRILDKYKDKS--ITLFGYSMG 93
Query: 178 AHLS 181
++
Sbjct: 94 GRVA 97
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 28.3 bits (64), Expect = 8.0
Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
TGL DPYFSGT
Sbjct: 127 TGL-VIDPYFSGT 138
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 28.1 bits (62), Expect = 8.2
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 169 VHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLD-PTDATFVD 227
++++GHS+GA + + L+ + + LD +
Sbjct: 116 INMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKR---VFLLDGIYSLKELL 172
Query: 228 IVHTDAAPFVKGGLGMGEPI 247
I + + F + G +
Sbjct: 173 IEYPEYDCFTRLAFPDGIQM 192
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 28.3 bits (64), Expect = 8.2
Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
GL P YFSG
Sbjct: 126 VGL-PLATYFSGP 137
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 28.3 bits (64), Expect = 8.3
Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 1/13 (7%)
Query: 200 TGLDPADPYFSGT 212
TGL D YFS +
Sbjct: 125 TGL-VPDAYFSAS 136
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 28.1 bits (63), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 155 LNTLRREVGIRTEYVHLIGHSLGAHLS 181
+ + +GI E H++G S G L
Sbjct: 116 FHAVCTALGI--ERYHVLGQSWGGMLG 140
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 28.1 bits (63), Expect = 8.9
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 152 AVLLNTLRREVGIRTEYVHLIGHSLGAHLS 181
L+ + + + V ++G+S+G
Sbjct: 92 IRHLHDFIKAMNFDGK-VSIVGNSMGGATG 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.434
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,489,812
Number of extensions: 587721
Number of successful extensions: 1101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 75
Length of query: 604
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 505
Effective length of database: 3,937,614
Effective search space: 1988495070
Effective search space used: 1988495070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)