RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2283
(604 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 235 bits (601), Expect = 5e-73
Identities = 101/269 (37%), Positives = 143/269 (53%), Gaps = 22/269 (8%)
Query: 111 ELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRTEYVH 170
++ +++ + VN I +W GS YTQA N R+VG A L+ L E+G E VH
Sbjct: 90 DMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVH 149
Query: 171 LIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFVDIVH 230
LIGHSLGAH+ G G L +GRITGLDPA+P F G VRLDP+DA FVD++H
Sbjct: 150 LIGHSLGAHVVGEAGRRL----EGHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIH 205
Query: 231 TDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKYLGCD 289
TD+AP + G GM + +GHLDF+PNGG+ PGC + + + I G + +G + ++ C+
Sbjct: 206 TDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDING-IWEGTQNFVACN 264
Query: 290 HIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQL 349
H+RSY+Y+ S+ F+ C +++ F +CF C C K G A +
Sbjct: 265 HLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEE---GCPKMGHYADQFEGKTA 321
Query: 350 QALGMSVYKPVYESKPSKYFLITGDKQPF 378
+L TGD F
Sbjct: 322 TVEQ-------------TVYLNTGDSGNF 337
Score = 85.6 bits (211), Expect = 8e-19
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CYG GC+S PW R L FP P + + LYT NP Q + P+TI
Sbjct: 4 CYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKF 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S +T I HGF++ GE W+
Sbjct: 64 SNFQLDRKTRFIVHGFIDKGEDGWLL 89
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 231 bits (589), Expect = 3e-71
Identities = 104/273 (38%), Positives = 143/273 (52%), Gaps = 23/273 (8%)
Query: 107 SFKSELTRQLLIKDDVNVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
++ ++ + + ++VN I +W GS YTQA N+R+VG A +L+ L
Sbjct: 86 NWLLDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSP 145
Query: 167 EYVHLIGHSLGAHLSGYVGSTLRTVYNLKLGRITGLDPADPYFSGTESIVRLDPTDATFV 226
V LIGHSLGAH++G GS LGRITGLDP + F GT VRLDPTDA FV
Sbjct: 146 SQVQLIGHSLGAHVAGEAGSRTP-----GLGRITGLDPVEASFQGTPEEVRLDPTDADFV 200
Query: 227 DIVHTDAAPFVKG-GLGMGEPIGHLDFYPNGGENQPGCDQGMFAFIHLERGSVVKGLRKY 285
D++HTDAAP + G G + +GHLDF+PNGGE PGC + + I G + +G R +
Sbjct: 201 DVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDG-IWEGTRDF 259
Query: 286 LGCDHIRSYEYFTESVNARCPFIAVECDTWDNFHAGNCFNCLRNNGLSCAKFGLNAVKHR 345
+ C+H+RSY+Y++ES+ F + C ++ F + CF C C + G A K
Sbjct: 260 VACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQ---GCPQMGHYADKFA 316
Query: 346 NSQLQALGMSVYKPVYESKPSKYFLITGDKQPF 378
KYFL TGD F
Sbjct: 317 VKTSDETQ-------------KYFLNTGDSSNF 336
Score = 85.6 bits (211), Expect = 1e-18
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 459 CYGEYGCYSLKYPWTNDA-RQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYN 517
CY + GC+S PW A R L P P + + LYT NP Q L +P TI
Sbjct: 4 CYEQIGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPSTIGA 63
Query: 518 SFLIPSHRTFIISHGFLEDGERLWIK 543
S +T I HGF++ GE W+
Sbjct: 64 SNFQTDKKTRFIIHGFIDKGEENWLL 89
>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 112
Score = 46.7 bits (111), Expect = 4e-07
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVG-G 59
+ Y+V+V +S + G + + G KG + +FK KP + H
Sbjct: 2 WRYKVSVTLSGKKVT-------GHILVSLFGNKGNSKQYEIFKGT-LKPDSTHSNEFDSD 53
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQ 103
VG + V F W + + +N R+ S ++VE+ KQ
Sbjct: 54 VDVGDLQMVKFIWYNNV-INPTLPRV----GASKIIVETNVGKQ 92
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 99
Score = 44.1 bits (104), Expect = 3e-06
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 434 TYGIGLKEVWEVKPELHKPG--------PLDNKCYGEYGCYSLK 469
TYGIGLKE+W + + KPG PLD YG Y L
Sbjct: 1 TYGIGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLN 44
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 46.8 bits (110), Expect = 4e-06
Identities = 35/119 (29%), Positives = 45/119 (37%)
Query: 315 WDNFHAGNCFNCLRNNGLSCAKFGLNAVKHRNSQLQALGMSVYKPVYESKPSKYFLITGD 374
+ + QA + V + F G
Sbjct: 115 TEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGS 174
Query: 375 KQPFCLHFFQALTHGGLQDTFARGMELHAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQ 433
+ + G + TF RG+ELHAKVTIFAEGCHGHL K L +F+LR N PQ
Sbjct: 175 VKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQ 233
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 113
Score = 43.0 bits (101), Expect = 8e-06
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVVGGA 60
+ Y V++ +S G+ + + G+KG T ++FK +
Sbjct: 2 WRYGVSITLSGK-------RATGQAKVALFGSKGNTHQFNIFKGILKPGSTHSNEFDAKL 54
Query: 61 GVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQT 104
VG I V F W + +V T+ + + + V+ EEK
Sbjct: 55 DVGTIEKVKFLWNN--NVVNPTF---PKVGAAKITVQKGEEKTV 93
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 39.5 bits (92), Expect = 2e-04
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 1 YLYRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQFYKPGAEHRQVV-GG 59
+ Y+V+V +S + G + ++G G + +FK KP A H + +
Sbjct: 2 WRYKVSVTLSGAK------KLSGYILVALYGNNGNSKQYEIFKGSL-KPEARHVRDIDVD 54
Query: 60 AGVGHITDVLFRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFKSELTRQLLIK 119
VG I V F W + V L + S + V+S + + F S T ++
Sbjct: 55 INVGEIQKVKFLWNN--KVINLFR---PTLGASQITVQSGVDGKEYN-FCSSDT----VR 104
Query: 120 DDVNVIVN 127
+DV +
Sbjct: 105 EDVLQSLY 112
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 29.2 bits (64), Expect = 0.96
Identities = 11/115 (9%), Positives = 21/115 (18%), Gaps = 2/115 (1%)
Query: 461 GEYGCYSLKYPWTNDARQLSQFPQDPSVMKPIYCLYTRHNPTECQPLEHKNPETIYNSFL 520
G + P T ++ + L N + + I
Sbjct: 21 RYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVPILGIC- 79
Query: 521 IPSHRTFIISHGFLEDGERLWIKFYKPGAEHRQVVGGAGVGHITDVLFRWEHEIS 575
H+ G + G+ V E+
Sbjct: 80 -LGHQLIAKFFGGKVGRGEKAEYSLVEIEIIDEDEIFKGLPKRLKVWESHMDEVK 133
>d1bhga1 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 27.7 bits (61), Expect = 1.5
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 64 HITDVLFRWEHEISVNILTWRLEALIHVS-SVLVESLEEKQTVVSFKSELTRQLLIKDDV 122
+I D+ E ++ +++ + V L+ + VV+ + QL +
Sbjct: 2 YIDDITVTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVS 61
Query: 123 NVIVNNWGAGSSPPYTQAVANIRLVGYMTAVLLNTLRREVGIRT 166
P Y ++ + + VGIRT
Sbjct: 62 LWWPYLMHER--PAYLYSLEVQLTAQTSLGPVSDFYTLPVGIRT 103
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain
{Clostridium absonum [TaxId: 29369]}
Length = 121
Score = 27.7 bits (61), Expect = 1.8
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 3 YRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLFKEQ 45
V + TA + G I G ++ +L
Sbjct: 9 IVVMIK----TADVQDAGTDNYIYFGIETKDGVKEEWALDNPG 47
>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase
associated protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 157
Score = 27.4 bits (61), Expect = 3.1
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 82 TWRLEALIHVSSVLVESLEEKQTVVSFKSELTRQLLIKDDVNVIV 126
W +E + + LV + +++ K + IK VN I
Sbjct: 11 KWFIENYENETESLVIDANKDESIFIGKCSQVL-VQIKGKVNAIS 54
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 121
Score = 26.9 bits (59), Expect = 3.6
Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 9/82 (10%)
Query: 3 YRVTVFISNSTASREHGGEVGKFSIEIHGTKGKTDDISLF-KEQFYKPGAEHRQVV---- 57
+ T+ + G I GKT + + + G++
Sbjct: 9 LVAYIS----TSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKD 64
Query: 58 GGAGVGHITDVLFRWEHEISVN 79
+ I ++ R +
Sbjct: 65 ENLKIDDIQNMWIRKRKYTAFP 86
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 26.4 bits (58), Expect = 3.9
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 51 AEHRQVVGGAGVGHITDVL-FRWEHEISVNILTWRLEALIHVSSVLVESLEEKQTVVSFK 109
+ VG VG IT+V RW+ E + + ++++ +SS+ + E ++ +
Sbjct: 2 TRYIGEVGDIVVGRITEVQQKRWKVETNSRL-----DSVLLLSSMNLPGGELRRRSAEDE 56
Query: 110 SELTRQLLIKDDVNVIV 126
+ L D ++ V
Sbjct: 57 LAMRGFLQEGDLISAEV 73
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 26.0 bits (57), Expect = 7.6
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 131 AGSSPPYTQA-VANIRLVG------YMTAVLLNTLRREVGIRTEYVHLIGHSLGAHLSGY 183
+GS+ P Q +++I +VG +A L +E+ + + + + L + G
Sbjct: 50 SGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGK 109
Query: 184 VGST 187
+G+
Sbjct: 110 IGTV 113
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 26.7 bits (58), Expect = 8.3
Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 7/87 (8%)
Query: 388 HGGLQDTFARG---MELHAKVTIFAEGCHGHLTKSLSSRFNLRDNACPQTYGIGLKEVWE 444
H G D A G + + I + +R T + +
Sbjct: 35 HAGTLDPMATGVLVIGIERATKILGLLTAAPKSY----AATIRLGQTTSTEDAEGQVLQS 90
Query: 445 VKPELHKPGPLDNKCYGEYGCYSLKYP 471
V + +D G
Sbjct: 91 VPAKHLTIEAIDAAMERLRGEIRQVPS 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.434
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,331,448
Number of extensions: 112813
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 18
Length of query: 604
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 513
Effective length of database: 1,158,166
Effective search space: 594139158
Effective search space used: 594139158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)