RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2284
(175 letters)
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein
2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 46
Score = 34.5 bits (79), Expect = 4e-04
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 136 HFCAVCGF-PSNYTCVPCGARYCCVRCLGTHQD 167
FC P+ YTC C A YC +RC TH
Sbjct: 8 GFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 40
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different
fingers {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 36
Score = 28.1 bits (62), Expect = 0.075
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 144 PSNYTCVPCGARYCCVRCLGTHQDTRC 170
P+ + C+PCG + L HQ C
Sbjct: 6 PARFMCLPCGIAFSSPSTLEAHQAYYC 32
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 26.9 bits (59), Expect = 0.25
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 132 FPNRHFCAVCGFPSNYTCVPCG-ARYCCVRC 161
P R CA C ++ C C YCC C
Sbjct: 5 APERPRCAYCSAEASKRCSRCQNEWYCCREC 35
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 25.7 bits (56), Expect = 0.56
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 136 HFCAVCGFPSNYTCVPC-GARYCCVRC 161
C CG ++ TC C ARYC C
Sbjct: 9 ESCWNCGRKASETCSGCNTARYCGSFC 35
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus
thermophilus [TaxId: 274]}
Length = 299
Score = 27.9 bits (62), Expect = 0.62
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 3 TMANRLSGRIKDANKQRVL-----DEATRQRRARKALESLESDNFHDDPHADLVMNKKAP 57
T R+ + + ++ KALESL + N K P
Sbjct: 160 THKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKMLPIPKIDNSKIP 219
Query: 58 KFQETLD 64
+ ++ +D
Sbjct: 220 EAKKYMD 226
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 55
Score = 25.3 bits (56), Expect = 1.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 155 RYCCVRCLGTHQDT 168
RYCC R L +H +T
Sbjct: 41 RYCCRRMLISHVET 54
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 24.9 bits (54), Expect = 1.2
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 138 CAVCGFPSNYTCVPCG-ARYCCVRC 161
C CG + C C YC C
Sbjct: 2 CVNCGREAMSECTGCHKVNYCSTFC 26
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 25.4 bits (55), Expect = 2.7
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 12 IKDANKQRVLDEATRQRRARKALESLESDNFHDDPHADLVMNKKAPKFQETLDAKSGSRK 71
++ QR E ALE++ +F D ++ P+ L + + +
Sbjct: 7 GMESYSQRQDHELQ-------ALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGE 59
Query: 72 KKSKS--------AEYYKLKTMEGLFHKTN-QQNYIFRFRKSLAQMIEE 111
+ Y + L + + + L ++ ++
Sbjct: 60 EVYVQVELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKK 108
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 24.6 bits (53), Expect = 3.7
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 133 PNRHFCAVCG-----FPSNYTCVPCGARYCCVRCLGTH 165
P+ C C + C CG CC H
Sbjct: 16 PSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKH 53
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 23.8 bits (51), Expect = 5.5
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 117 SQGSAYENAEAKPSKFPNRHFCAVCGFPSNYTCVPCGARYCCVRCLGTHQDTRCLKWT 174
S GS+ E A PN +C S + C C + H C+ T
Sbjct: 2 SSGSSGEFAID-----PNEPTYCLCNQVSYGEMIGCDNEQCPIEW--FHFS--CVSLT 50
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 23.8 bits (51), Expect = 8.5
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 11/34 (32%)
Query: 144 PSNYTCVPCGAR-----------YCCVRCLGTHQ 166
N C CGA C+ C G H+
Sbjct: 13 TGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHR 46
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 65
Score = 23.0 bits (50), Expect = 8.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 155 RYCCVRCLGTHQD 167
RYCC R + TH D
Sbjct: 43 RYCCRRMILTHVD 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.129 0.391
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,814
Number of extensions: 26943
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 32
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)