Query psy2287
Match_columns 268
No_of_seqs 185 out of 1280
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 20:49:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00460 acyl-CoA dehydrogenas 100.0 4.3E-38 9.3E-43 299.5 24.7 261 2-266 212-474 (646)
2 PLN02636 acyl-coenzyme A oxida 100.0 3.6E-38 7.8E-43 301.8 22.2 260 2-267 264-542 (686)
3 KOG0140|consensus 100.0 8.8E-39 1.9E-43 268.3 14.5 194 1-226 213-407 (408)
4 PLN02312 acyl-CoA oxidase 100.0 6.5E-38 1.4E-42 299.5 22.3 257 2-267 269-538 (680)
5 PLN02443 acyl-coenzyme A oxida 100.0 9.6E-37 2.1E-41 290.7 26.7 265 2-267 216-492 (664)
6 KOG0139|consensus 100.0 9.6E-39 2.1E-43 271.9 11.2 179 1-211 219-398 (398)
7 cd01150 AXO Peroxisomal acyl-C 100.0 1.6E-35 3.6E-40 281.6 21.0 228 2-230 219-451 (610)
8 KOG0141|consensus 100.0 3E-36 6.4E-41 253.3 12.4 192 1-224 228-420 (421)
9 KOG0136|consensus 100.0 6E-34 1.3E-38 259.9 19.8 266 1-267 227-495 (670)
10 KOG0135|consensus 100.0 2.7E-32 5.8E-37 244.4 17.7 245 2-250 241-490 (661)
11 cd01151 GCD Glutaryl-CoA dehyd 100.0 2.1E-32 4.6E-37 248.6 17.1 191 1-224 192-383 (386)
12 PRK03354 crotonobetainyl-CoA d 100.0 2.5E-32 5.3E-37 247.7 16.4 192 1-225 187-379 (380)
13 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.5E-32 5.4E-37 248.7 16.3 192 1-222 199-393 (394)
14 cd01162 IBD Isobutyryl-CoA deh 100.0 2.5E-32 5.5E-37 247.2 16.2 192 1-223 182-374 (375)
15 cd01157 MCAD Medium chain acyl 100.0 3.1E-32 6.8E-37 246.8 16.3 191 1-223 186-377 (378)
16 PRK12341 putative acyl-CoA deh 100.0 3.7E-32 8.1E-37 246.6 16.6 191 1-224 188-379 (381)
17 cd01161 VLCAD Very long chain 100.0 4.6E-32 1E-36 248.1 16.9 193 2-224 214-407 (409)
18 PLN02526 acyl-coenzyme A oxida 100.0 8.4E-32 1.8E-36 246.5 17.0 190 2-224 209-399 (412)
19 PLN02519 isovaleryl-CoA dehydr 100.0 9.6E-32 2.1E-36 245.6 17.1 191 2-224 212-403 (404)
20 PTZ00461 isovaleryl-CoA dehydr 100.0 8.4E-32 1.8E-36 246.4 16.5 192 1-224 216-408 (410)
21 cd01160 LCAD Long chain acyl-C 100.0 1.1E-31 2.3E-36 242.8 16.4 189 1-221 182-371 (372)
22 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.1E-31 2.4E-36 242.7 15.8 186 1-220 184-370 (372)
23 cd01156 IVD Isovaleryl-CoA deh 100.0 2.3E-31 5E-36 240.9 16.1 191 1-223 185-376 (376)
24 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.4E-30 3.1E-35 237.1 17.0 191 3-225 199-390 (393)
25 cd01158 SCAD_SBCAD Short chain 100.0 1.7E-30 3.6E-35 234.9 16.3 190 2-223 183-373 (373)
26 PLN02876 acyl-CoA dehydrogenas 100.0 2.7E-30 6E-35 254.2 17.2 194 1-224 623-819 (822)
27 TIGR03203 pimD_small pimeloyl- 100.0 2.6E-30 5.6E-35 234.2 14.7 187 1-220 188-375 (378)
28 PRK09463 fadE acyl-CoA dehydro 100.0 2.9E-30 6.3E-35 248.4 15.0 187 1-217 276-466 (777)
29 PRK11561 isovaleryl CoA dehydr 100.0 1.3E-29 2.8E-34 236.3 16.6 191 4-224 250-442 (538)
30 cd01159 NcnH Naphthocyclinone 100.0 3.7E-29 8E-34 226.1 16.6 205 4-223 161-370 (370)
31 cd01154 AidB Proteins involved 100.0 3.9E-29 8.4E-34 229.3 16.3 192 4-222 225-417 (418)
32 cd00567 ACAD Acyl-CoA dehydrog 100.0 4.2E-29 9.1E-34 221.7 15.8 188 1-219 139-327 (327)
33 PRK13026 acyl-CoA dehydrogenas 100.0 2.2E-29 4.8E-34 241.7 14.4 183 1-216 275-464 (774)
34 cd01153 ACAD_fadE5 Putative ac 100.0 7.2E-29 1.6E-33 226.9 16.2 202 3-220 199-405 (407)
35 cd01163 DszC Dibenzothiophene 100.0 4.5E-28 9.8E-33 219.5 18.0 204 1-222 167-372 (377)
36 PTZ00456 acyl-CoA dehydrogenas 99.9 2.2E-27 4.8E-32 225.6 15.7 205 3-223 268-480 (622)
37 KOG0137|consensus 99.9 9.5E-28 2.1E-32 216.9 10.8 192 2-223 268-460 (634)
38 cd01152 ACAD_fadE6_17_26 Putat 99.9 2.3E-27 5.1E-32 215.1 12.8 186 1-223 187-380 (380)
39 TIGR03204 pimC_large pimeloyl- 99.9 5.9E-27 1.3E-31 213.4 14.2 188 2-223 192-394 (395)
40 KOG0138|consensus 99.9 9.5E-25 2.1E-29 183.6 10.1 191 1-224 236-427 (432)
41 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.2E-23 2.5E-28 166.1 13.6 149 48-222 1-150 (150)
42 KOG1469|consensus 99.9 1E-21 2.2E-26 163.1 12.1 195 1-225 187-384 (392)
43 PTZ00457 acyl-CoA dehydrogenas 99.8 1.1E-19 2.5E-24 168.8 11.1 140 23-214 219-362 (520)
44 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 2.3E-17 5E-22 128.1 12.6 131 69-210 2-133 (134)
45 TIGR02309 HpaB-1 4-hydroxyphen 99.6 8.4E-15 1.8E-19 135.7 12.4 155 1-189 220-391 (477)
46 COG2368 Aromatic ring hydroxyl 97.4 0.0015 3.3E-08 59.8 11.0 77 106-189 323-399 (493)
47 TIGR02310 HpaB-2 4-hydroxyphen 97.1 0.01 2.2E-07 55.9 13.0 72 107-185 328-399 (519)
48 PF03241 HpaB: 4-hydroxyphenyl 91.3 1.6 3.5E-05 36.2 8.5 76 107-189 44-119 (205)
49 PTZ00457 acyl-CoA dehydrogenas 78.6 14 0.0003 35.2 8.8 83 82-184 417-499 (520)
50 KOG0137|consensus 66.8 1.3E+02 0.0028 29.2 12.1 69 105-184 535-603 (634)
51 PF15076 DUF4543: Domain of un 35.4 28 0.00061 23.1 1.6 35 209-243 5-42 (75)
52 PF10281 Ish1: Putative stress 25.2 59 0.0013 18.8 1.7 27 236-262 8-34 (38)
53 PRK09463 fadE acyl-CoA dehydro 24.8 4.7E+02 0.01 26.5 8.9 98 106-222 562-661 (777)
54 PF08741 YwhD: YwhD family; I 21.1 1.1E+02 0.0024 24.1 2.9 30 1-30 1-30 (163)
55 PF08292 RNA_pol_Rbc25: RNA po 20.7 33 0.00071 25.9 -0.0 14 25-38 24-37 (122)
No 1
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-38 Score=299.48 Aligned_cols=261 Identities=31% Similarity=0.514 Sum_probs=213.2
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
++|||+++++++++|+++.+++.+.||||+||++++||+++.++++|...+.....+.+..|...|+.+++. +.|+++
T Consensus 212 ~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~--~~g~a~ 289 (646)
T PTZ00460 212 PLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQ--YPRFAA 289 (646)
T ss_pred CCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 579999999999999999999999999999999999998877777775322111122334445559999888 555554
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
|++++++|+..|++||. +++++.||+++|.+|++|+++.+.+++++.+.+++...+++.....+.++....++.+..+
T Consensus 290 ~Al~iAvrYa~~R~QFg~-~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~a 368 (646)
T PTZ00460 290 QALTVAIRYSIYRQQFTN-DNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAIL 368 (646)
T ss_pred HHHHHHHHHHHccccCCC-CCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHH
Confidence 99999999999999983 2233569999999999999999999999999998888776654433333322234467889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhcC-CCccccch
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSG-GLLSSTVT 239 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~~-~~~~~~~~ 239 (268)
+++|.++++.+.++++.|+|+|||+||+.+++++++|||++...++||+++|++.+||+.+++.+.+..++ +++.++++
T Consensus 369 s~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~ 448 (646)
T PTZ00460 369 SAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFN 448 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765 46667999
Q ss_pred hccccCCCCccccCCHHHHHHHHHHHh
Q psy2287 240 YLGKIGAPKSQYVHSLDSLLQAYQQVA 266 (268)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (268)
||+..+..... ..+.++++++|+.++
T Consensus 449 ~l~~~~~~~~~-~~~~~~~~~~~~~~~ 474 (646)
T PTZ00460 449 FLSHITEKLAD-QTTIESLGQLLGLNC 474 (646)
T ss_pred HHHHhhhhccc-cCChHHHHHHhHHHH
Confidence 99876533333 567788888888664
No 2
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.6e-38 Score=301.79 Aligned_cols=260 Identities=36% Similarity=0.551 Sum_probs=210.3
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCc---c--cchhhhhHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKND---K--LTYGTMIFVRVSLVKNVAA 76 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~---~--l~~~~~~~~R~~laa~~~~ 76 (268)
++|||+|.++++++|+++.+++.|.||||+||++++||+++.++++|...+.+.. . +....|..+|+.+++. +
T Consensus 264 ~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~--a 341 (686)
T PLN02636 264 VLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYG--S 341 (686)
T ss_pred CCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHH--H
Confidence 4799999999999999999999999999999999999987777666654442211 1 2233455559999998 5
Q ss_pred HHHHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q psy2287 77 AFLSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPE 155 (268)
Q Consensus 77 ~g~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~ 155 (268)
.|+++ |++++++|+..|++||+ +++++.+|+++|.+|++|+++.+.+++++.+.+.+...+. +..+.++.....+
T Consensus 342 ~g~a~~Al~iAvrYa~~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~---~~~~~~~~~~~~~ 417 (686)
T PLN02636 342 VGVLKASNTIAIRYSLLRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYS---EMKKTHDDQLVAD 417 (686)
T ss_pred HHHHHHHHHHHHHHHHcCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccchh
Confidence 55554 99999999999999983 3333456999999999999999999998876665544332 2233444322245
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhcCCCcc
Q psy2287 156 LHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLS 235 (268)
Q Consensus 156 ~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~~~~~~ 235 (268)
.+..++++|.++++.+.++++.|+|+|||+||..+++++++|||++...|+||+|+|++++||+.+++.+.+..++++..
T Consensus 418 ~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~ 497 (686)
T PLN02636 418 VHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLS 497 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999998888888778
Q ss_pred ccchhccccC---------C----CCccccCCHHHHHHHHHHHhc
Q psy2287 236 STVTYLGKIG---------A----PKSQYVHSLDSLLQAYQQVAA 267 (268)
Q Consensus 236 ~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~ 267 (268)
+++.||.... + .....+.|++.++++|+.|++
T Consensus 498 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~ 542 (686)
T PLN02636 498 VTWNYLRESMNTYLSQPNPVTTRWEGEEHLRDPKFQLDAFRYRTS 542 (686)
T ss_pred hHHHHHHhhhhhhhcccccccccccchhhhcCHHHHHHHHHHHHH
Confidence 8899985421 1 111348899999999999864
No 3
>KOG0140|consensus
Probab=100.00 E-value=8.8e-39 Score=268.28 Aligned_cols=194 Identities=18% Similarity=0.251 Sum_probs=182.3
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
.++||++.+..+.+||.|.+++..|+|+||+||.+|+||. +|.|+++.+..|+.. |+.+++. .+|++
T Consensus 213 ~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~------~G~GFkvAm~~fd~t-----Rp~vAa~--alG~A 279 (408)
T KOG0140|consen 213 GDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGA------PGAGFKVAMGGFDKT-----RPNVAAG--ALGLA 279 (408)
T ss_pred CCCCCcCcChhhhcccccCCCCceeeeeecccchhccccC------CCccceehhhhccCC-----CCchhhh--hhHHH
Confidence 4799999999999999999999999999999999999997 899999999999999 9999999 77887
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
. +++++++|+..|++|| +||++||.+|..|++|..+++.+|++++. ++|.+|+++++ ...
T Consensus 280 ~r~ld~a~ky~~eRK~FG-------~~iA~hQ~vqF~LAdMA~~le~aRL~~~~-------aa~evd~~r~~-----sy~ 340 (408)
T KOG0140|consen 280 QRCLDEATKYALERKAFG-------TPIANHQAVQFMLADMAINLELARLMTRN-------AAWEVDNGRRN-----SYY 340 (408)
T ss_pred HHHHHHHHHHHHHHHHhC-------cChhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCCcc-----hHH
Confidence 5 9999999999999998 59999999999999999999999999765 56667888753 568
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWN 226 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~ 226 (268)
++++|.+++..|..++..++|++||.||..++|+++++||++..+|||||++|+|.+|+|.+|..+.
T Consensus 341 aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 341 ASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 4
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=6.5e-38 Score=299.47 Aligned_cols=257 Identities=30% Similarity=0.455 Sum_probs=210.1
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCC---cccc--hhhhhHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKN---DKLT--YGTMIFVRVSLVKNVAA 76 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~---~~l~--~~~~~~~R~~laa~~~~ 76 (268)
++|||+|+++++++|+++.+++.|.||||+||++++||+++.++++|...+.+. ..+. ...|..+|+.+++. +
T Consensus 269 ~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~--a 346 (680)
T PLN02312 269 ICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVS--A 346 (680)
T ss_pred CCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHH--H
Confidence 489999999999999999999999999999999999999888888887665322 2222 23455669999998 5
Q ss_pred HHHHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q psy2287 77 AFLSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPE 155 (268)
Q Consensus 77 ~g~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~ 155 (268)
.|+++ |++.+++|+..|++||..+++++.||+++|.+|++|+++.+++++++....++.+.++ .+..+...+
T Consensus 347 ~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~-------~~~~~~~~~ 419 (680)
T PLN02312 347 IYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYV-------KRTPESNKA 419 (680)
T ss_pred HHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccccch
Confidence 66655 9999999999999998544443457999999999999999999998877666555442 222111134
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhcCCC-c
Q psy2287 156 LHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGL-L 234 (268)
Q Consensus 156 ~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~~~~-~ 234 (268)
.+..++++|.++++.+.+++++|+|+|||+||..+++++++|||++...++||+|+|++.++|+.+++.+.+.+++++ .
T Consensus 420 ~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~ 499 (680)
T PLN02312 420 IHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPF 499 (680)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999988877764 3
Q ss_pred ccc-chhccccCCC-----CccccCCHHHHHHHHHHHhc
Q psy2287 235 SST-VTYLGKIGAP-----KSQYVHSLDSLLQAYQQVAA 267 (268)
Q Consensus 235 ~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 267 (268)
.++ ++|++..... ....+.|++.++++|+.|++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~ 538 (680)
T PLN02312 500 KGLGLEHMNGPRPVIPTQLTSSTLRDSQFQLNLFCLRER 538 (680)
T ss_pred cchhhhhhccccccccccccccccCCHHHHHHHHHHHHH
Confidence 444 7788643211 22358999999999999864
No 5
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=9.6e-37 Score=290.75 Aligned_cols=265 Identities=46% Similarity=0.798 Sum_probs=218.4
Q ss_pred CCCCeEEcccCCCCC---CCCCCceEEEecceecCccccccccCccCCCCceeecCCc-ccchhhhhHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLG---MNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKND-KLTYGTMIFVRVSLVKNVAAA 77 (268)
Q Consensus 2 ~~pGvti~~~~~~~G---~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~-~l~~~~~~~~R~~laa~~~~~ 77 (268)
+.|||+|.++++++| +++.+++.|.||||+||.+++||+++.++++|.+...... .+.+..|..+|+.+++.+ .+
T Consensus 216 ~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a-~g 294 (664)
T PLN02443 216 PLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADA-ST 294 (664)
T ss_pred CCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 589999999999999 5668999999999999999999988877778877653221 344556666799999884 44
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q psy2287 78 FLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELH 157 (268)
Q Consensus 78 g~~~al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 157 (268)
.+++|++++++|+..|++||...+..+.++.+++.+|++|+++.+.+++++.+.+++...+++.....+.++....++.+
T Consensus 295 ~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h 374 (664)
T PLN02443 295 ALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAH 374 (664)
T ss_pred HHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHH
Confidence 44569999999999999998433322356778888899999999999999999998887776544433344433334567
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhcCCCcccc
Q psy2287 158 AMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSST 237 (268)
Q Consensus 158 ~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~~~~~~~~ 237 (268)
..++++|.++++.+.++++.|+|+|||+||+.+++++++++|++...++||+|+|+++++|+.+++.+.+.++++++.++
T Consensus 375 ~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~ 454 (664)
T PLN02443 375 ACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGT 454 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999888888877888
Q ss_pred chhccccC--------CCCccccCCHHHHHHHHHHHhc
Q psy2287 238 VTYLGKIG--------APKSQYVHSLDSLLQAYQQVAA 267 (268)
Q Consensus 238 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 267 (268)
+.||+... ...+..+.|++.++++|+.+++
T Consensus 455 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 492 (664)
T PLN02443 455 TAYMGRVQHLLQCRCGVQTAEDWLNPSVVLEAFEARAA 492 (664)
T ss_pred HHHHhhhhhhhcccccccccccccCHHHHHHHHHHHHH
Confidence 99996432 1223347899999999999764
No 6
>KOG0139|consensus
Probab=100.00 E-value=9.6e-39 Score=271.94 Aligned_cols=179 Identities=22% Similarity=0.294 Sum_probs=169.4
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
+++||+++....|++|||++.++.++||||+||.+++||+ .|.|++..+..|+.+ |+.++++ ++|++
T Consensus 219 rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe------~G~GykyAm~~Ln~g-----RIgi~Aq--mlgla 285 (398)
T KOG0139|consen 219 RDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGE------YGKGYKYAIEVLNAG-----RIGIGAQ--MLGLA 285 (398)
T ss_pred CCCCCcccCCccccccccccceeeEEeccccccchhhccc------CCcchHHHHHhcCcc-----ceeehhh--hhhhh
Confidence 5899999999999999999999999999999999999997 799999999999999 9999999 89998
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ |+|.++.|+++|.+|| +++.++|.+|++||++.++++++|+++|+ +++..+.|.+ ...+
T Consensus 286 Q~c~d~tI~Y~q~R~~FG-------k~l~d~Q~iQhqiA~~~teiEaaRlL~yn-------aAr~k~~G~p-----f~ke 346 (398)
T KOG0139|consen 286 QGCFDETIPYAQERLQFG-------KRLLDFQGLQHQIADMATEIEAARLLVYN-------AARMKDQGLP-----FVKE 346 (398)
T ss_pred HhHHHhhhHHHHHHHHhc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHcCCc-----hHHH
Confidence 8 9999999999999998 59999999999999999999999999776 4556688876 4669
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENT 211 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~ 211 (268)
++|+|++++|.+..+++.|+|++||.||..++|.+|+|||++...||||++|
T Consensus 347 AAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 347 AAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 9999999999999999999999999999999999999999999999999975
No 7
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.6e-35 Score=281.63 Aligned_cols=228 Identities=49% Similarity=0.757 Sum_probs=191.3
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCC-cccch----hhhhHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKN-DKLTY----GTMIFVRVSLVKNVAA 76 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~-~~l~~----~~~~~~R~~laa~~~~ 76 (268)
+.|||+|.++++++|+++.+++.+.||||+||++++||+++.++++|....... ....+ ..+..+|+.+++.+ .
T Consensus 219 ~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a-~ 297 (610)
T cd01150 219 PLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDA-A 297 (610)
T ss_pred CCCCeEEeecccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHH-H
Confidence 569999999999999999999999999999999999999888888877555443 11111 12234488888884 4
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhH
Q psy2287 77 AFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPEL 156 (268)
Q Consensus 77 ~g~~~al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (268)
+.+++|++.+++|+..|++||+.+++++.+|+++|.+|++|+++.+..++++...+.+...+.+..+..+.+.....++.
T Consensus 298 g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 377 (610)
T cd01150 298 MSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAEL 377 (610)
T ss_pred HHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHH
Confidence 44455999999999999999965455566799999999999999999999998877777666666666666654444567
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhc
Q psy2287 157 HAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKS 230 (268)
Q Consensus 157 ~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~ 230 (268)
+..++++|.++++.+.++++.|+|+|||+||..+++++++|||++...++||+|+|+++++++.+++.+.+..+
T Consensus 378 ~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~ 451 (610)
T cd01150 378 HALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS 451 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999998865543
No 8
>KOG0141|consensus
Probab=100.00 E-value=3e-36 Score=253.28 Aligned_cols=192 Identities=21% Similarity=0.187 Sum_probs=179.0
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
+.+||++..+..+++||||+++++++|+|++||++++||. ++.|+-.++..+..+ |+.+++. .+|+.
T Consensus 228 kgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~------enkGvYvlMsgLd~E-----RLvla~g--plglm 294 (421)
T KOG0141|consen 228 KGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGE------ENKGVYVLMSGLDLE-----RLVLAAG--PLGLM 294 (421)
T ss_pred CCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCc------CCceEEEEecCCChh-----HhhhccC--chHHH
Confidence 5789999999999999999999999999999999999997 899999999999999 9999999 67777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ ++|++..|+++|++|| ++++++|.+|.++++|++.+.+.|+.++.++... |.|..+ ...
T Consensus 295 qa~~d~~~~Y~~qR~afg-------k~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~-------d~g~~~-----~kd 355 (421)
T KOG0141|consen 295 QAALDETFPYAHQRKAFG-------KKIGHFQLLQGKLADMYTTLCASRSYVYNVARAC-------DAGNVD-----PKD 355 (421)
T ss_pred HHHHHHhhhHHHHHHHhC-------CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCC-----hhh
Confidence 6 9999999999999998 5999999999999999999999999988765533 777754 458
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
++.+++|++|.+..++.+|+|++||.||.+++|..|++||++...|+.||+||.+..|+|.+.+.
T Consensus 356 cag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 356 CAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred hhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998754
No 9
>KOG0136|consensus
Probab=100.00 E-value=6e-34 Score=259.90 Aligned_cols=266 Identities=56% Similarity=0.910 Sum_probs=248.4
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
+|.|||+|+|+..+||..|.+++-+-||||+||.+++|.+++.+.++|.+.+.....+.+.+|...|..++.-. ...++
T Consensus 227 ~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~-a~~La 305 (670)
T KOG0136|consen 227 KPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQ-ARFLA 305 (670)
T ss_pred CCCCCCeecCCCccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccceeeeEEEeehhHHHH-HHHHH
Confidence 47899999999999999999999999999999999999999999999999988888888999988898888776 77888
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 81 KAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 81 ~al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+|..+|++|+..|+|+..+++.++..+.++|..|.||-...+..++.+....++.+.|......++.|+.+.++|.++.+
T Consensus 306 ~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS 385 (670)
T KOG0136|consen 306 KAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALS 385 (670)
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHH
Confidence 99999999999999999889888899999999999999999999999999999999999999999999988889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhcCCCccccchh
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSSTVTY 240 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~~~~~~~~~~~ 240 (268)
+..|..+++.+.+.++.|...|||+||+..+.|..+|-++-+.++|||.|.||.+++||.|+|.+.....+|+.+|++.|
T Consensus 386 ~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~y 465 (670)
T KOG0136|consen 386 AGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAY 465 (670)
T ss_pred hhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccc--cCCHHH-HHHHHHHHhc
Q psy2287 241 LGKIGAPKSQY--VHSLDS-LLQAYQQVAA 267 (268)
Q Consensus 241 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~ 267 (268)
+...+-+.+-. ..|..+ ++++||.+|+
T Consensus 466 l~~~~~~~~~~~~~~~~~~e~~~a~e~~A~ 495 (670)
T KOG0136|consen 466 LAASALKPQLISGAGDWLNEYVEAFEHRAA 495 (670)
T ss_pred hhhcccCccccccccchhHHHHHHHHHHHH
Confidence 99977655221 244545 9999999985
No 10
>KOG0135|consensus
Probab=100.00 E-value=2.7e-32 Score=244.39 Aligned_cols=245 Identities=37% Similarity=0.594 Sum_probs=216.2
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcc---c--chhhhhHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDK---L--TYGTMIFVRVSLVKNVAA 76 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~---l--~~~~~~~~R~~laa~~~~ 76 (268)
..|||+|.|+.++.|++|.+++-+.|||||||.+++|.+.+.++|+|...+.+... + ..+++..+|+.++..+ +
T Consensus 241 t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~a-i 319 (661)
T KOG0135|consen 241 TLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSA-I 319 (661)
T ss_pred CCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHH-H
Confidence 47999999999999999999999999999999999999999999999988876543 2 3445667799999884 4
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhH
Q psy2287 77 AFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPEL 156 (268)
Q Consensus 77 ~g~~~al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (268)
+.++-++.+|++|...|+||||+.++++.+|.++|..|+||-.+.+..++++....++...+.+.....+.+.. ..+.
T Consensus 320 ~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~kei 397 (661)
T KOG0135|consen 320 GALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEI 397 (661)
T ss_pred HHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHH
Confidence 44444999999999999999998777788999999999999999999999999999888888776655555543 3678
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHHHHhhcCCCccc
Q psy2287 157 HAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSS 236 (268)
Q Consensus 157 ~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~~~~~~~~~~~~ 236 (268)
++.++..|.++|+...+...+|.+.|||+||...+.+..+--|-...+++||+|.|+.+++++.||+.|....+..+.+
T Consensus 398 HALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~~~e~p~~- 476 (661)
T KOG0135|consen 398 HALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQKKETPLS- 476 (661)
T ss_pred HHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHhhccCCch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998866666643
Q ss_pred cchhccccCCCCcc
Q psy2287 237 TVTYLGKIGAPKSQ 250 (268)
Q Consensus 237 ~~~~~~~~~~~~~~ 250 (268)
+++|++.++-..+.
T Consensus 477 ~~~~ln~~~s~~~~ 490 (661)
T KOG0135|consen 477 FVGFLNEYPSSPDP 490 (661)
T ss_pred HHHHHhhccccCCc
Confidence 89999988877654
No 11
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=2.1e-32 Score=248.58 Aligned_cols=191 Identities=17% Similarity=0.193 Sum_probs=167.8
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.+.|+++||++++++++.||||+||++++++. +.|+..+...+... |+.+++. ++|++
T Consensus 192 ~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-------~~g~~~~~~~~~~~-----r~~~aa~--~lG~a 257 (386)
T cd01151 192 RGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-------AEGLRGPFKCLNNA-----RYGIAWG--ALGAA 257 (386)
T ss_pred CCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-------cccHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 3679999999999999999999999999999999999973 45555555555555 8888888 77887
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| +|+.++|.+|++|++|.++++++|++++.+...+ +.+... ...
T Consensus 258 ~~al~~a~~~a~~R~~~g-------~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~-------d~~~~~-----~~~ 318 (386)
T cd01151 258 EDCYHTARQYVLDRKQFG-------RPLAAFQLVQKKLADMLTEIALGLLACLRVGRLK-------DQGKAT-----PEQ 318 (386)
T ss_pred HHHHHHHHHHHHhCeecC-------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCc-----hHH
Confidence 7 9999999999999997 5999999999999999999999999988765433 444321 346
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
.+++|.++++.+.++++.++|++||.||.+++|++|+|||+++..+++|++++++..|++.+++.
T Consensus 319 ~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 319 ISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999864
No 12
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.5e-32 Score=247.67 Aligned_cols=192 Identities=16% Similarity=0.175 Sum_probs=167.0
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++. .|+++|||++++++|.||||+||+++++|. +|.|+......++.. |+.+++. ++|++
T Consensus 187 ~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~------~g~g~~~~~~~~~~~-----r~~~aa~--~~G~a 252 (380)
T PRK03354 187 MSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGR------EGNGFNRVKEEFDHE-----RFLVALT--NYGTA 252 (380)
T ss_pred CCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCC------CChHHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 357999986 699999999999999999999999999986 566765544445555 8888877 67777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| +|+.++|.+|++|++|.+.++++++++++++..+ +.+.. ....
T Consensus 253 ~~al~~a~~~a~~R~~fg-------~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~-------~~~~~-----~~~~ 313 (380)
T PRK03354 253 MCAFEDAARYANQRVQFG-------EAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKA-------DNGTI-----TSGD 313 (380)
T ss_pred HHHHHHHHHHHHhhhccC-------ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCc-----chhH
Confidence 6 9999999999999997 5999999999999999999999999987754433 44432 1346
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAW 225 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~ 225 (268)
.+++|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++|+++++|++.+++.|
T Consensus 314 ~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 314 AAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 788999999999999999999999999999999999999999999999999999999999998765
No 13
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.5e-32 Score=248.74 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=167.8
Q ss_pred CCCCCeEEcccCCCCCCCC--CCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNT--VNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAF 78 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rg--t~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g 78 (268)
++.|||++.++|+++||++ +++++|.|+||+||++++++. ++.|+......++.. |+..++. ++|
T Consensus 199 ~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~------~~~g~~~~~~~~~~~-----r~~~~a~--~lG 265 (394)
T cd01155 199 MDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILG------EGRGFEIAQGRLGPG-----RIHHCMR--LIG 265 (394)
T ss_pred CCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCC------CChHHHHHHHHhhhh-----HHHHHHH--HHH
Confidence 3578999999999999997 688999999999999999985 566776666666666 8888888 777
Q ss_pred HHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q psy2287 79 LSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELH 157 (268)
Q Consensus 79 ~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 157 (268)
+++ +++.+++|+++|++|| .|+.++|.+|++|++|.+.++++|++++.+.+.+ +.+.. .+..
T Consensus 266 ~a~~al~~~~~~~~~R~~fg-------~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~-------~~~~~---~~~~ 328 (394)
T cd01155 266 AAERALELMCQRAVSREAFG-------KKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMI-------DTVGN---KAAR 328 (394)
T ss_pred HHHHHHHHHHHHHhcCccCC-------CcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC---cchh
Confidence 776 9999999999999997 5999999999999999999999999987765433 33221 1134
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHH
Q psy2287 158 AMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLI 222 (268)
Q Consensus 158 ~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll 222 (268)
..++++|.++++.+.++++.+++++||.||..+++++|+|||++...+++|++|+++.+|++.++
T Consensus 329 ~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 329 KEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999884
No 14
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.5e-32 Score=247.16 Aligned_cols=192 Identities=21% Similarity=0.293 Sum_probs=169.4
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||+|.++|+++||++++++++.||||+||+++++|. +|.|+......+... |+.+++. ++|++
T Consensus 182 ~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~------~~~g~~~~~~~l~~~-----r~~~aa~--~lG~a 248 (375)
T cd01162 182 KGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGG------EGQGFGIAMAGLNGG-----RLNIASC--SLGAA 248 (375)
T ss_pred CCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCC------CCchHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 3679999999999999999999999999999999999986 567776555555666 8888888 67776
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| .|+.++|.+|++|++|.+++++++++++.+.+.+ +.+.. +....
T Consensus 249 ~~al~~~~~~a~~R~~fg-------~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~-------~~~~~----~~~~~ 310 (375)
T cd01162 249 QAALDLARAYLEERKQFG-------KPLADFQALQFKLADMATELVASRLMVRRAASAL-------DRGDP----DAVKL 310 (375)
T ss_pred HHHHHHHHHHHHhhhccC-------ccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC----cchHH
Confidence 6 9999999999999997 5999999999999999999999999987765544 44432 13457
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
++++|+++++.+.++++.+++++||.||..+++++|+|||+++..+++|++++++.+|++.+++
T Consensus 311 ~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 311 CAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999999999998875
No 15
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=3.1e-32 Score=246.76 Aligned_cols=191 Identities=18% Similarity=0.221 Sum_probs=168.4
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.++|+++|+++++++++.||||+||++++++. ++.|+......+... |+.+++. ++|++
T Consensus 186 ~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~------~~~g~~~~~~~~~~~-----r~~~aa~--~lG~a 252 (378)
T cd01157 186 ADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIG------EGAGFKIAMGAFDKT-----RPPVAAG--AVGLA 252 (378)
T ss_pred CCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCC------CCchHHHHHHHHhhh-----HHHHHHH--HHHHH
Confidence 3679999999999999999999999999999999999985 567776665556666 8888888 77777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| +++.++|.+|++|++|.++++++|++++.+...+ +.+.. ....
T Consensus 253 ~~~l~~~~~~~~~R~~fg-------~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~-------d~~~~-----~~~~ 313 (378)
T cd01157 253 QRALDEATKYALERKTFG-------KLIAEHQAVSFMLADMAMKVELARLAYQRAAWEV-------DSGRR-----NTYY 313 (378)
T ss_pred HHHHHHHHHHHHhccccC-------ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----chHH
Confidence 6 9999999999999998 5999999999999999999999999987655433 44432 1346
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
.+++|+++++.+.++++.+++++||.||..+++++|+|||++...+++|++|+++++|++.+++
T Consensus 314 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 314 ASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999999875
No 16
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-32 Score=246.58 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=168.0
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++. .|+++||+++++++|.|+||+||+++++|. ++.|+......++.. |+.+++. ++|++
T Consensus 188 ~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~------~~~g~~~~~~~~~~~-----r~~~aa~--~lG~a 253 (381)
T PRK12341 188 SSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGE------EGMGFLNVMYNFEME-----RLINAAR--SLGFA 253 (381)
T ss_pred CCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCC------CChHHHHHHHHHHhH-----HHHHHHH--HHHHH
Confidence 367999995 699999999999999999999999999986 566766555556666 8999888 77777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| .|+.++|.+|++|+++.++++++|++++++.. ..+++.. ....
T Consensus 254 ~~al~~~~~~~~~R~~~g-------~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~-------~~d~~~~-----~~~~ 314 (381)
T PRK12341 254 ECAFEDAARYANQRIQFG-------KPIGHNQLIQEKLTLMAIKIENMRNMVYKVAW-------QADNGQS-----LRTS 314 (381)
T ss_pred HHHHHHHHHHHHhhhCCC-------ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCCC-----chHH
Confidence 6 9999999999999997 59999999999999999999999999876543 3344442 2457
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
++++|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++++.+|++.+++.
T Consensus 315 ~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 315 AALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999865
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=4.6e-32 Score=248.13 Aligned_cols=193 Identities=21% Similarity=0.244 Sum_probs=170.5
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
+.|||++.++|+++||+++++++|.|+||+||+++++|. +|.|+......++.. |+.+++. ++|+++
T Consensus 214 ~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~------~g~g~~~~~~~l~~~-----r~~~aa~--~lG~a~ 280 (409)
T cd01161 214 SFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGE------VGDGFKVAMNILNNG-----RFGMGAA--LIGTMK 280 (409)
T ss_pred CCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCC------CChHHHHHHHHHHhH-----HHHHHHH--HHHHHH
Confidence 578999999999999999999999999999999999986 566776665566666 8888888 777776
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+++.+++|+++|++|| .|+.++|.+|++|+++.++++++|++++.+.+.+ +++.. .+....+
T Consensus 281 ~al~~a~~~a~~R~~fg-------~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~-------d~~~~---~~~~~~~ 343 (409)
T cd01161 281 RCIEKAVDYANNRKQFG-------KKIHEFGLIQEKLANMAILQYATESMAYMTSGNM-------DRGLK---AEYQIEA 343 (409)
T ss_pred HHHHHHHHHHHhceeCC-------ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCC---cchHHHH
Confidence 9999999999999997 5999999999999999999999999987765443 44331 1235678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
+++|.++++.+.++++.+++++||.||..+++++|+|||+++..+++|++++++++|++.+|..
T Consensus 344 ~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 344 AISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998763
No 18
>PLN02526 acyl-coenzyme A oxidase
Probab=99.98 E-value=8.4e-32 Score=246.53 Aligned_cols=190 Identities=23% Similarity=0.298 Sum_probs=165.5
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
+.|||++.+.|+++|+|++++++|.||||+||++++++. .+ ++......+... |+.+++. ++|+++
T Consensus 209 ~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~------~~-~~~~~~~~~~~~-----r~~~aa~--~lG~a~ 274 (412)
T PLN02526 209 GAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPG------VN-SFQDTNKVLAVS-----RVMVAWQ--PIGISM 274 (412)
T ss_pred CCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCC------cc-cHHHHHHHHHHH-----HHHHHHH--HHHHHH
Confidence 579999999999999999999999999999999999973 22 343333445555 8888888 778876
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+++.+++|+++|++|| .++.++|.+|+++++|.++++++|++++++...+ +.+... ...+
T Consensus 275 ~al~~a~~~a~~R~~fg-------~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~-------d~~~~~-----~~~~ 335 (412)
T PLN02526 275 GVYDMCHRYLKERKQFG-------APLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLY-------ESGKMT-----PGHA 335 (412)
T ss_pred HHHHHHHHHHHhCeeCC-------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCC-----hHHH
Confidence 9999999999999997 5999999999999999999999999987655433 444321 3357
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
+++|.++++.+.++++.++++|||.||.++++++|+|||+++..+++|++|++++.|++.+++.
T Consensus 336 ~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 336 SLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999886
No 19
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.98 E-value=9.6e-32 Score=245.63 Aligned_cols=191 Identities=20% Similarity=0.196 Sum_probs=167.1
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
+.|||++.+.|+++||++++++++.||||+||+++++|. ++.|+......++.. |+.+++. ++|+++
T Consensus 212 ~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~------~~~G~~~~~~~~~~~-----r~~~aa~--~lG~a~ 278 (404)
T PLN02519 212 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQ------EGKGVYVMMSGLDLE-----RLVLAAG--PLGLMQ 278 (404)
T ss_pred CCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCC------CCccHHHHHHHHHHH-----HHHHHHH--HHHHHH
Confidence 469999999999999999999999999999999999985 456665444455566 8888888 777776
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+++.+++|+++|.+|| .|+.++|.+|++|++|.+.+++++++++.+...+ +.+... ...+
T Consensus 279 ~al~~a~~~a~~R~~~g-------~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~-------~~~~~~-----~~~~ 339 (404)
T PLN02519 279 ACLDVVLPYVRQREQFG-------RPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDC-------DNGKVD-----RKDC 339 (404)
T ss_pred HHHHHHHHHHHhceeCC-------ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCc-----HHHH
Confidence 9999999999999997 4999999999999999999999999987765433 444321 3467
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
+.+|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++|+++.+|++.+++.
T Consensus 340 ~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 340 AGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 7789999999999999999999999999999999999999999999999999999999998763
No 20
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.98 E-value=8.4e-32 Score=246.45 Aligned_cols=192 Identities=20% Similarity=0.175 Sum_probs=167.8
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.++|+++|+++++++++.|+||+||++++||. +|.|+......+... |+.+++. ++|++
T Consensus 216 ~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~------~g~g~~~~~~~~~~~-----r~~~aa~--~~G~a 282 (410)
T PTZ00461 216 RGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGE------EGKGMVGMMRNLELE-----RVTLAAM--AVGIA 282 (410)
T ss_pred CCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCC------CCccHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 3679999999999999999999999999999999999986 566665544445555 8888888 67776
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| +|+.++|.+|++|+++.+.++++|++++.+...+ +.+.. ....
T Consensus 283 ~~al~~a~~ya~~R~~fg-------~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~-------~~~~~-----~~~~ 343 (410)
T PTZ00461 283 ERSVELMTSYASERKAFG-------KPISNFGQIQRYIAEGYADTEAAKALVYSVSHNV-------HPGNK-----NRLG 343 (410)
T ss_pred HHHHHHHHHHHHhCeecC-------cCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCc-----chHH
Confidence 6 9999999999999997 5999999999999999999999999987655433 33331 1346
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
++++|.++++.+.++++.+++++||.||..+++++|+|||++.+.+++|++|+++..|++.+++.
T Consensus 344 ~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 344 SDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999999999999999999999999998764
No 21
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.98 E-value=1.1e-31 Score=242.78 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=165.7
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.++|+++||+++++++|.|+||+||++++||. ++.|+......+... |+.+++. ++|++
T Consensus 182 ~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~------~~~g~~~~~~~~~~~-----~~~~aa~--~lG~a 248 (372)
T cd01160 182 RGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGE------ENKGFYYLMQNLPQE-----RLLIAAG--ALAAA 248 (372)
T ss_pred CCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCC------CCchHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 3579999999999999999999999999999999999986 566666555555566 8888888 67776
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| .++.++|.+|++|+++.+++++++++++.+...+ +.+.. ....
T Consensus 249 ~~al~~a~~~a~~R~~~g-------~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~-------~~~~~-----~~~~ 309 (372)
T cd01160 249 EFMLEETRNYVKQRKAFG-------KTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRH-------EQGRL-----DVAE 309 (372)
T ss_pred HHHHHHHHHHHHhhhccC-------ccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----chHH
Confidence 6 9999999999999997 5999999999999999999999999987755433 44432 1347
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFL 221 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~l 221 (268)
++++|.++++.+.++++.+++++||.||..+++++|+|||+++..+++|++++++.+|++.+
T Consensus 310 ~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 310 ASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999999999999999999999999999999875
No 22
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.98 E-value=1.1e-31 Score=242.75 Aligned_cols=186 Identities=19% Similarity=0.205 Sum_probs=163.0
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++. .|+++|++++++++|.|+||+||+++++|. ++.|+......++.. |+.+++. ++|++
T Consensus 184 ~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~~~~~~l~~~-----r~~~a~~--~~G~a 249 (372)
T TIGR03207 184 MDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGN------EGQGFVQVMQGFDFS-----RALIGLQ--VLAVA 249 (372)
T ss_pred CCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCC------CChhHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 367999975 699999999999999999999999999986 566776666666777 9988888 77777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| +|+.++|.+|++|++|.+.++++|++++.+...+ +.+.. ....
T Consensus 250 ~~al~~a~~~~~~R~~fg-------~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~-------~~~~~-----~~~~ 310 (372)
T TIGR03207 250 RAALDETWRYVAERQAFG-------KPLSAFQGVSHPLADAETQVEAARLLCLQTLWLK-------DHGLP-----HTSE 310 (372)
T ss_pred HHHHHHHHHHHHhccccC-------CchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----chHH
Confidence 6 9999999999999998 5999999999999999999999999987765433 44432 1346
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARF 220 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ 220 (268)
++++|.++++.+.++++.++|++||.||..+ |++|+|||+++..|++|++|+++++|++.
T Consensus 311 ~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 311 AAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 7899999999999999999999999999998 99999999999999999999999999874
No 23
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.97 E-value=2.3e-31 Score=240.88 Aligned_cols=191 Identities=22% Similarity=0.223 Sum_probs=168.0
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.++|+++||+++++++|.|+||+||+++++|. .+.|+......+... |+.+++. ++|++
T Consensus 185 ~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~------~~~g~~~~~~~~~~~-----r~~~aa~--~lG~a 251 (376)
T cd01156 185 KGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGG------ENKGVYVLMSGLDYE-----RLVLAGG--PIGIM 251 (376)
T ss_pred CCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCC------CCchHHHHHHHHhhH-----HHHHHHH--HHHHH
Confidence 3579999999999999999999999999999999999985 566776665666677 8888888 67776
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| .|+.++|.+|++|+++.++++++|++++++...+ +.+... ...
T Consensus 252 ~~al~~~~~~~~~R~~~g-------~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~-------d~~~~~-----~~~ 312 (376)
T cd01156 252 QAALDVAIPYAHQRKQFG-------QPIGEFQLVQGKLADMYTRLNASRSYLYTVAKAC-------DRGNMD-----PKD 312 (376)
T ss_pred HHHHHHHHHHHHHhHhcC-------cchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCC-----HHH
Confidence 6 9999999999999997 5999999999999999999999999987765433 444321 235
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
.+.+|.++++.+.++++.+++++||.||..+++++|+|||+++..+++|++++++..|++.+++
T Consensus 313 ~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 313 AAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 6778999999999999999999999999999999999999999999999999999999998864
No 24
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=1.4e-30 Score=237.07 Aligned_cols=191 Identities=25% Similarity=0.313 Sum_probs=172.9
Q ss_pred CCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-
Q psy2287 3 LPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK- 81 (268)
Q Consensus 3 ~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~- 81 (268)
+|||++.++|++.|++++++++|.|+||+||.++++|. ++.||..+...++.+ |+.+++. ..|+++
T Consensus 199 ~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~------~~~g~~~~~~~l~~~-----r~~~aa~--~~G~a~~ 265 (393)
T COG1960 199 TPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGE------EGDGFKIAMETLNVE-----RLGIAAQ--ALGIAEA 265 (393)
T ss_pred CCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCc------CCchHHHHHHhhchH-----HHHHHHH--HHHHHHH
Confidence 59999999985449999999999999999999999985 789999999999999 9998888 666766
Q ss_pred HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHh
Q psy2287 82 AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSC 161 (268)
Q Consensus 82 al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (268)
|++.+++|+++|++|| +++.++|.+|.+|+++.+++++++++++++. +..+.+.. ....++
T Consensus 266 al~~~~~ya~~R~~fg-------~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa-------~~~~~~~~-----~~~~~~ 326 (393)
T COG1960 266 ALEEAVAYARERKQFG-------RPIADFQLVQFKLADMAAELEAARLLVLRAA-------ELADAGDD-----AGAEAA 326 (393)
T ss_pred HHHHHHHHHHHhHhcC-------CchhhcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCCC-----cHHHHH
Confidence 9999999999999997 5999999999999999999999999877643 33355442 237899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHH
Q psy2287 162 CLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAW 225 (268)
Q Consensus 162 ~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~ 225 (268)
++|.++++.+.++++.++|++||.||..+++++|+|||++...+++|++++++..+++.+++.+
T Consensus 327 ~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 327 MAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 25
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.97 E-value=1.7e-30 Score=234.90 Aligned_cols=190 Identities=25% Similarity=0.350 Sum_probs=166.9
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
+.|||+|.+.|+++||+++++++|.|+||+||++++++. .+.++......+... |+.+++. ++|+++
T Consensus 183 ~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~------~~~g~~~~~~~~~~~-----r~~~~a~--~lG~a~ 249 (373)
T cd01158 183 DTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGE------EGEGFKIAMQTLDGG-----RIGIAAQ--ALGIAQ 249 (373)
T ss_pred CCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCC------CCchHHHHHHHHHHH-----HHHHHHH--HHHHHH
Confidence 579999999999999999999999999999999999985 455665554455555 8888888 777776
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+++.+++|+++|.+|| .++.++|.+|++++++.+.+++++++++.+.+.+ +.+.. .....
T Consensus 250 ~~l~~~~~~~~~R~~~g-------~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~-------~~~~~-----~~~~~ 310 (373)
T cd01158 250 AALDAAVDYAKERKQFG-------KPIADFQGIQFKLADMATEIEAARLLTYKAARLK-------DNGEP-----FIKEA 310 (373)
T ss_pred HHHHHHHHHHHhCcccC-------CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----cHHHH
Confidence 9999999999999997 4999999999999999999999999987765433 33331 23567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
+.+|.++++.+.++++.+++++|+.||..+++++|+|||++...+++|++++++..|++++||
T Consensus 311 ~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 311 AMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999999875
No 26
>PLN02876 acyl-CoA dehydrogenase
Probab=99.97 E-value=2.7e-30 Score=254.23 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=170.4
Q ss_pred CCCCCeEEcccCCCCCCCC--CCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNT--VNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAF 78 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rg--t~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g 78 (268)
++.|||++.++|+++||++ +++++|.||||+||+++++|. +|.|+......++.+ |+.+++. ++|
T Consensus 623 ~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~------~g~g~~~~~~~l~~~-----r~~~aa~--~vG 689 (822)
T PLN02876 623 IQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLG------EGRGFEIAQGRLGPG-----RLHHCMR--LIG 689 (822)
T ss_pred CCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecC------CCchHHHHHHHHhhh-----HHHHHHH--HHH
Confidence 3689999999999999998 468999999999999999975 567776666666777 9999888 777
Q ss_pred HHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q psy2287 79 LSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELH 157 (268)
Q Consensus 79 ~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 157 (268)
+++ |++.+++|+++|++|| +++.++|.+|++|++|.+.++++|++++.+...+ +.+.. .+..
T Consensus 690 ~a~~ale~a~~ya~~R~~fg-------~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~-------d~~~~---~~~~ 752 (822)
T PLN02876 690 AAERGMQLMVQRALSRKAFG-------KLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQL-------DRLGN---KKAR 752 (822)
T ss_pred HHHHHHHHHHHHHHhhhhcC-------CchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HccCC---cchh
Confidence 766 9999999999999998 5999999999999999999999999988765544 33211 1134
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 158 AMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 158 ~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
..++++|.++++.+.++++.++|++||.||..+++++|+|||+++..+++|++|+++.+|++.+++.
T Consensus 753 ~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 753 GIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999876
No 27
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.97 E-value=2.6e-30 Score=234.17 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=162.1
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.+.+.++|+ .+++|+||||+||+++++|. ++.|+......++.. |+.+++. +.|++
T Consensus 188 ~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~------~~~g~~~~~~~l~~~-----r~~~aa~--~~G~a 251 (378)
T TIGR03203 188 AGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGD------PENALPLIERVVDDA-----RAALCAE--AVGLM 251 (378)
T ss_pred CCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCC------cchHHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 36799999887776665 56899999999999999986 677887777777788 9999998 77777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|++|| +||.++|.+|++|++|.+.++++|++++.+... .+.+.. .+....
T Consensus 252 ~~al~~a~~ya~~R~qFG-------~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~-------~~~~~~---~~~~~~ 314 (378)
T TIGR03203 252 DESLKTTVEYIKTRKQFG-------VPIGSFQVLQHRAADMFVAVEQARSMAMFATMA-------SDFDDA---KERANA 314 (378)
T ss_pred HHHHHHHHHHHhcCeecC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccccc---chhHHH
Confidence 6 9999999999999998 599999999999999999999999998765432 232211 113468
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARF 220 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ 220 (268)
++++|+++++.+.++++.++|+|||.||..+++++++|||++...+++|++++++..+++.
T Consensus 315 ~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 315 IAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999873
No 28
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.97 E-value=2.9e-30 Score=248.43 Aligned_cols=187 Identities=22% Similarity=0.217 Sum_probs=164.2
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHH-HHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVR-VSLVKNVAAAFL 79 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R-~~laa~~~~~g~ 79 (268)
+++|||++.+.|+++|++ ..++++.||||+||.+++||.. ...|.||..++..++.+ | +.+++. +.|+
T Consensus 276 ~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~---~~~G~G~~~l~~~L~~g-----R~i~laA~--avG~ 344 (777)
T PRK09463 276 TDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGP---KMAGQGWRMLMECLSVG-----RGISLPSN--STGG 344 (777)
T ss_pred CCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccc---cccChHHHHHHHHHHHH-----HHHHHHHH--HHHH
Confidence 368999999999999998 6799999999999999999841 12488999888888888 9 888888 6666
Q ss_pred HH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q psy2287 80 SK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHA 158 (268)
Q Consensus 80 ~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 158 (268)
++ |++.+++|+++|++|| .||+++|.+|++|++|.+++++++++.+.+. +..|.|... ..
T Consensus 345 ar~al~~Av~YA~~R~QFG-------~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a-------~~~D~G~~~-----~~ 405 (777)
T PRK09463 345 AKLAALATGAYARIRRQFK-------LPIGKFEGIEEPLARIAGNAYLMDAARTLTT-------AAVDLGEKP-----SV 405 (777)
T ss_pred HHHHHHHHHHHHHHHHHcC-------CChhhcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhCCCCc-----hH
Confidence 66 9999999999999998 5999999999999999999988888876543 334555431 45
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCccccccc--CChhhhhhhccccccccchhHHHHHHH
Q psy2287 159 MSCCLKAVSTSDSATFIEVCRRSCGGHGYMNS--SNFPNTYGMVTAAETYEGENTVLYLQT 217 (268)
Q Consensus 159 ~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~--~~l~r~~rDa~~~~i~~Gt~~v~~~~i 217 (268)
.++++|+++++.+.+++++++|+|||.||..+ ++++|+|||++...|+||+|+++++.|
T Consensus 406 ~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 406 LSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 78999999999999999999999999999987 899999999999999999999999987
No 29
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.97 E-value=1.3e-29 Score=236.30 Aligned_cols=191 Identities=16% Similarity=0.155 Sum_probs=167.3
Q ss_pred CCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-H
Q psy2287 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK-A 82 (268)
Q Consensus 4 pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~-a 82 (268)
+||+|.+.++++|+|++++++|.|+|| .+++||. +|.|+..+...++.+ |+.+++. +.|+++ +
T Consensus 250 nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~------~g~G~~~i~~~l~~~-----Rl~~a~~--a~G~a~~A 313 (538)
T PRK11561 250 NAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGE------EGEGIRLILKMGGMT-----RFDCALG--SHGLMRRA 313 (538)
T ss_pred CceEEecccccccCCCCceeEEEECCH---HHHHCCC------CCchHHHHHHHHHHH-----HHHHHHH--HHHHHHHH
Confidence 489999999999999999999999999 4889986 788998888778888 9999888 666665 9
Q ss_pred HHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh-hhHHHHHh
Q psy2287 83 VTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGL-PELHAMSC 161 (268)
Q Consensus 83 l~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~ 161 (268)
++.+++|+++|++|| +||+++|.+|++|++|.+++++++++++++...+ +.+..... .-.+..++
T Consensus 314 l~~A~~yA~~R~~FG-------~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~-------d~~~~~~~~~~~rl~t~ 379 (538)
T PRK11561 314 FSVAIYHAHQRQVFG-------KPLIEQPLMRQVLSRMALQLEGQTALLFRLARAW-------DRRADAKEALWARLFTP 379 (538)
T ss_pred HHHHHHHHHhCccCC-------CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHH
Confidence 999999999999998 5999999999999999999999999988876655 33321100 11345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 162 CLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 162 ~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
++|.++++.+.+++++++|++||.||.++++++|+|||++...|++|+++|+.+.++|.+.+.
T Consensus 380 ~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~ 442 (538)
T PRK11561 380 AAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999763
No 30
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.96 E-value=3.7e-29 Score=226.13 Aligned_cols=205 Identities=15% Similarity=0.031 Sum_probs=163.8
Q ss_pred CCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceee---cCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVK---SKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 4 pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~---~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
+||++.++|+++||+++++++|.|+||+||++++|+........+.+.. .......+. |+.+++. ++|++
T Consensus 161 ~Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~aa~--~lG~a 233 (370)
T cd01159 161 AEYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVF-----PLSFAAV--SLGAA 233 (370)
T ss_pred HHCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHH-----HHHHHHH--HHHHH
Confidence 4899999999999999999999999999999999974211001112211 111123344 7788887 77777
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|+++|.+|+. .+ .++.++|.+|++|++|.+.+++++++++.+.+.+++... .+.... ++....
T Consensus 234 ~~~l~~~~~~~~~R~~~~~-~g---~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~---~~~~~~-~~~~~~ 305 (370)
T cd01159 234 EGALAEFLELAGKRVRQYG-AA---VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHAL---AGGPID-VEERAR 305 (370)
T ss_pred HHHHHHHHHHhccCcccCC-Cc---cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCC-HHHHHH
Confidence 6 99999999999998741 11 489999999999999999999999999888776654221 111111 234567
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchh-HHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGEN-TVLYLQTARFLIK 223 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~-~v~~~~ia~~ll~ 223 (268)
++++|.++++.+.++++.+++++||.||.++++++|+|||+++..+++|++ |+++..|+|.+|+
T Consensus 306 ~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 306 IRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 889999999999999999999999999999999999999999999999999 9999999999874
No 31
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.96 E-value=3.9e-29 Score=229.25 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=164.1
Q ss_pred CCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-H
Q psy2287 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK-A 82 (268)
Q Consensus 4 pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~-a 82 (268)
|||+|.++|+++|++++++++|+|||| .++++|. +|.|+......++.+ |+.+++. ++|+++ +
T Consensus 225 ~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~------~g~G~~~~~~~l~~~-----R~~~aa~--~~G~a~~a 288 (418)
T cd01154 225 NGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGD------EGKGIYYILEMLNIS-----RLDNAVA--ALGIMRRA 288 (418)
T ss_pred CCeEecccccccCCCCCCeEEEEecCc---CccccCC------CCccHHHHHHHHHHH-----HHHHHHH--HHHHHHHH
Confidence 599999999999999999999999998 3788885 688888777777888 9999888 666665 9
Q ss_pred HHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhH
Q psy2287 83 VTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCC 162 (268)
Q Consensus 83 l~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (268)
++.+++|+++|++|| .++.++|.+|++|+++.++++++++++++++..++.. ..+.+......+..+++
T Consensus 289 l~~a~~ya~~R~~fg-------~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~----~~~~~~~~~~~r~~~~~ 357 (418)
T cd01154 289 LSEAYHYARHRRAFG-------KPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRA----AADKPVEAHMARLATPV 357 (418)
T ss_pred HHHHHHHHhcCcCCC-------CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccCChhHHHHHHHHHHH
Confidence 999999999999997 5999999999999999999999999988876655321 01111000012346788
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHH
Q psy2287 163 LKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLI 222 (268)
Q Consensus 163 aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll 222 (268)
+|+++++.+.++++.+++++||.||.++++++|+|||+++..|++|+++|+++.+.|.+.
T Consensus 358 aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 358 AKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999874
No 32
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.96 E-value=4.2e-29 Score=221.71 Aligned_cols=188 Identities=25% Similarity=0.323 Sum_probs=162.0
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.+.|+++||++++++++.|+||+||++++++. .+.++......+... |+.+++. ++|++
T Consensus 139 ~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~------~~~g~~~~~~~~~~~-----~~~~aa~--~~G~a 205 (327)
T cd00567 139 ADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGE------EGGGFELAMKGLNVG-----RLLLAAV--ALGAA 205 (327)
T ss_pred CCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCC------CCchHHHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 3579999999999999999999999999999999999985 444544333344455 8888888 67776
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
+ +++.+++|++.|.+|| .++.++|.+|++|+++.+.+++++++++.+.+.+ +.+.. +....
T Consensus 206 ~~al~~~~~~~~~r~~~g-------~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~-------~~~~~----~~~~~ 267 (327)
T cd00567 206 RAALDEAVEYAKQRKQFG-------KPLAEFQAVQFKLADMAAELEAARLLLYRAAWLL-------DQGPD----EARLE 267 (327)
T ss_pred HHHHHHHHHHHHhccccC-------CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCC----cchHH
Confidence 6 9999999999999997 5999999999999999999999999987765544 33322 13568
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTAR 219 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~ 219 (268)
++++|.++++.+.++++.+++++||.||..+++++|+|||+++..+++|++++++..+++
T Consensus 268 ~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 268 AAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999988764
No 33
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.96 E-value=2.2e-29 Score=241.66 Aligned_cols=183 Identities=23% Similarity=0.167 Sum_probs=159.1
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHH-HHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVR-VSLVKNVAAAFL 79 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R-~~laa~~~~~g~ 79 (268)
+++|||++.+.|+++|+++. +++++||||+||.+++||.. ...|.||..++..++.+ | +.+++. +.|+
T Consensus 275 ~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~---~~~G~G~~~l~~~L~~g-----R~i~laA~--a~G~ 343 (774)
T PRK13026 275 TDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGP---DYAGRGWRMLVECLSAG-----RGISLPAL--GTAS 343 (774)
T ss_pred CCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCc---ccCChHHHHHHHHHHHH-----HHHHHHHH--HHHH
Confidence 46899999999999999874 68999999999999999851 12488999888888888 9 788888 6677
Q ss_pred HH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q psy2287 80 SK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIA---TSYALRFSADWLWDIYNSVNADLEKGNMGGLPE 155 (268)
Q Consensus 80 ~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a---~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~ 155 (268)
++ |++.+++|+++|++|| +||+++|.+|++|++|.+ .++++|.+++.+ .+.+..
T Consensus 344 A~~al~~Av~YA~~R~QFG-------~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a----------~D~G~~----- 401 (774)
T PRK13026 344 GHMATRTTGAYAYVRRQFG-------MPIGQFEGVQEALARIAGNTYLLEAARRLTTTG----------LDLGVK----- 401 (774)
T ss_pred HHHHHHHHHHHHHHHHhcC-------CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCCC-----
Confidence 66 9999999999999998 599999999999999999 677888776542 244442
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCccccccc--CChhhhhhhccccccccchhHHHHHH
Q psy2287 156 LHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNS--SNFPNTYGMVTAAETYEGENTVLYLQ 216 (268)
Q Consensus 156 ~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~--~~l~r~~rDa~~~~i~~Gt~~v~~~~ 216 (268)
....++++|+++++.+.+++++++|++||.||..+ ++++|+|||++...|++|+|+++++.
T Consensus 402 ~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 402 PSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 24678999999999999999999999999999997 89999999999999999999999984
No 34
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.96 E-value=7.2e-29 Score=226.92 Aligned_cols=202 Identities=15% Similarity=0.161 Sum_probs=158.3
Q ss_pred CCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-
Q psy2287 3 LPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK- 81 (268)
Q Consensus 3 ~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~- 81 (268)
.|||++.++|+++||+++++++|+|+||+|| ++|. ++.|+......+... |+.+++. ++|+++
T Consensus 199 ~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~------~~~g~~~~~~~l~~~-----r~~~aa~--~lG~a~~ 262 (407)
T cd01153 199 RNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGE------EGMGLAQMFAMMNGA-----RLGVGTQ--GTGLAEA 262 (407)
T ss_pred CCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCC------CCccHHHHHHHHHHH-----HHHHHHH--HHHHHHH
Confidence 3899999999999999999999999999999 6764 567776655556666 8888888 677776
Q ss_pred HHHHHHHhhhccccCCCCCCCC-CccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--hhhHHH
Q psy2287 82 AVTIATRYSAVRRQSEMKPGER-EPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGG--LPELHA 158 (268)
Q Consensus 82 al~~a~~~~~~R~~~g~~~~~~-~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 158 (268)
+++.+++|+++|.+||..-+.. ...+.++|.+|++|+++.+.+++++++++++.+.++......+..+... ......
T Consensus 263 al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~ 342 (407)
T cd01153 263 AYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSALADL 342 (407)
T ss_pred HHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHHHHHH
Confidence 9999999999999997100000 0128899999999999999999999998876665532100000000000 001245
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHH-HHHHH
Q psy2287 159 MSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYL-QTARF 220 (268)
Q Consensus 159 ~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~-~ia~~ 220 (268)
.++++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|+++++++ .|++.
T Consensus 343 ~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~ 405 (407)
T cd01153 343 LTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRK 405 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhcc
Confidence 678999999999999999999999999999999999999999999999999999887 55543
No 35
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.96 E-value=4.5e-28 Score=219.52 Aligned_cols=204 Identities=14% Similarity=0.019 Sum_probs=159.3
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.++|+++||+++++++|+||||+||+++++|. ++.++. ....+... |+.+++. ++|++
T Consensus 167 ~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~------~~~g~~-~~~~~~~~-----~l~~aa~--~lG~a 232 (377)
T cd01163 167 TDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPR------PNAPDR-GTLLTAIY-----QLVLAAV--LAGIA 232 (377)
T ss_pred CCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCC------Cccccc-cccccHHH-----HHHHHHH--HHHHH
Confidence 4679999999999999999999999999999999999985 454543 22223445 7888888 77777
Q ss_pred H-HHHHHHHhhhccc-cCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHH
Q psy2287 81 K-AVTIATRYSAVRR-QSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHA 158 (268)
Q Consensus 81 ~-al~~a~~~~~~R~-~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 158 (268)
+ +++.+++|+++|+ .|+ +.+. .++.++|.+|++|+++.++++++|++++.++..+++.......-++....+...
T Consensus 233 ~~al~~~~~~~~~R~~~~g-~~~~--~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~ 309 (377)
T cd01163 233 RAALDDAVAYVRSRTRPWI-HSGA--ESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAAL 309 (377)
T ss_pred HHHHHHHHHHHHhcCCCCC-cCCc--cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 6 9999999999995 565 1111 267899999999999999999999999888776654221000000100012356
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHH
Q psy2287 159 MSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLI 222 (268)
Q Consensus 159 ~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll 222 (268)
.++++|.++++.+.++++.+++++||.||..+++++|+|||+++..+|...+.. ..+++.+++
T Consensus 310 ~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~~~-~~~~~~~~~ 372 (377)
T cd01163 310 AVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYK-ERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHHHH-HHHhchhhc
Confidence 788999999999999999999999999999999999999999999999888643 346666554
No 36
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.95 E-value=2.2e-27 Score=225.64 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=166.1
Q ss_pred CCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-
Q psy2287 3 LPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK- 81 (268)
Q Consensus 3 ~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~- 81 (268)
.+||++.++++++|+++++++++.|||+ .+++||. ++.|+......++.. |+.+++. .+|+++
T Consensus 268 ~~gv~~~~~~~kmG~~gs~t~~l~fd~~---~~~llG~------~~~Gl~~~~~~mn~a-----Rl~vaa~--~lG~a~~ 331 (622)
T PTZ00456 268 AKNVKCIGLEKKMGIKGSSTCQLSFENS---VGYLIGE------PNAGMKQMFTFMNTA-----RVGTALE--GVCHAEL 331 (622)
T ss_pred CCCeeecCcccccCCCCCceEEEEeeCh---hHhhcCC------CChHHHHHHHHHHHH-----HHHHHHH--HHHHHHH
Confidence 4689999999999999999999999994 6889986 678888777777777 9999988 677765
Q ss_pred HHHHHHHhhhccccCCCCCC-----CCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-Chhh
Q psy2287 82 AVTIATRYSAVRRQSEMKPG-----EREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMG-GLPE 155 (268)
Q Consensus 82 al~~a~~~~~~R~~~g~~~~-----~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~-~~~~ 155 (268)
+++.+++|+++|++|++..+ ....+|+++|.+|++|+++.+.++++|++++.+...++......+..... ....
T Consensus 332 Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~ 411 (622)
T PTZ00456 332 AFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHE 411 (622)
T ss_pred HHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhh
Confidence 99999999999999743111 01259999999999999999999999999888766554221000000000 0011
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHH-HHHHHHHHH
Q psy2287 156 LHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLY-LQTARFLIK 223 (268)
Q Consensus 156 ~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~-~~ia~~ll~ 223 (268)
....++++|.++++.+.++++.++|+|||.||.++++++|+|||+++..|++||++|+. ..|+|.+++
T Consensus 412 ~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkllg 480 (622)
T PTZ00456 412 IGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVLS 480 (622)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhhC
Confidence 24578899999999999999999999999999999999999999999999999999997 599999983
No 37
>KOG0137|consensus
Probab=99.95 E-value=9.5e-28 Score=216.94 Aligned_cols=192 Identities=22% Similarity=0.291 Sum_probs=173.5
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
+-.||+-.+...+||.+|+..++|.|+||.||.+++||. +|.|++.+++.++-+ |+.+++. .+|+++
T Consensus 268 ~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~------~G~G~kva~nilnsg-----R~~~aaa--~~G~mk 334 (634)
T KOG0137|consen 268 DFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGK------PGDGFKVAMNILNSG-----RFGMAAA--LLGLMK 334 (634)
T ss_pred cccCccCCCchhhhcccccceeeeeeccccccHHHhcCC------CCcchHHHHHHHccC-----CcchhHH--HHHHHH
Confidence 346899999999999999999999999999999999997 899999999999999 9999988 666665
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+++++.+|+..|.||| +++.++..+|.++++|...+++++++.|..... +|+... .+...++
T Consensus 335 r~I~~~~d~~~~rtQ~g-------~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~-------~D~~~a---~d~~lEa 397 (634)
T KOG0137|consen 335 RIIEEAADYATNRTQFG-------KKLHDFGLIQEKVAEMASKVYATESMLYLLSGL-------MDEVGA---KDVQLEA 397 (634)
T ss_pred HHHHHHHHHhhcceecC-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccc---eeeeehH
Confidence 9999999999999998 699999999999999999999999998864433 355322 3467899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
++.|+|+++.+..++++++|++||.||+.+.+++|.+||++.+.|+||++||+++.|+..-+.
T Consensus 398 ai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 398 AILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred HHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999865543
No 38
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.95 E-value=2.3e-27 Score=215.10 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=153.8
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
++.|||++.+.|+++| +++++++.|+||+||+++++|. ++.++......+... |+.+++. ..
T Consensus 187 ~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~------~~~g~~~~~~~l~~~-----r~~~~~~--~~--- 248 (380)
T cd01152 187 MDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGE------VNDGWKVAMTTLNFE-----RVSIGGS--AA--- 248 (380)
T ss_pred CCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCC------CCchHHHHHHHHHhc-----ccccchh--hh---
Confidence 3579999999999988 6789999999999999999985 566666554444444 5554433 22
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 81 KAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 81 ~al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
.+++.+++|+.+|.+|| +|+.++|.+|++|++|.+++++++++++.+.+.+ +.+... ...+
T Consensus 249 ~~~~~a~~~a~~r~~~g-------~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~-------~~~~~~-----~~~~ 309 (380)
T cd01152 249 TFFELLLARLLLLTRDG-------RPLIDDPLVRQRLARLEAEAEALRLLVFRLASAL-------AAGKPP-----GAEA 309 (380)
T ss_pred HHHHHHHHHHHHHHhcC-------CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCC-----ChHH
Confidence 25667778888888887 5999999999999999999999999987766544 333321 2357
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCccccccc--------CChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRSCGGHGYMNS--------SNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~--------~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
+++|+++++.+.++++.+++++||.||..+ ++++|+|||+++..+++|++++++.+|++.+++
T Consensus 310 a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 310 SIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999988 699999999999999999999999999998864
No 39
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.94 E-value=5.9e-27 Score=213.42 Aligned_cols=188 Identities=16% Similarity=0.141 Sum_probs=154.5
Q ss_pred CCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH
Q psy2287 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK 81 (268)
Q Consensus 2 ~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~ 81 (268)
+.|||++.+.+.+.| ++++++|.|+||+||+++++|. ++.++......+..+ |+.+++ .|+++
T Consensus 192 ~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~------~~~g~~~~~~~l~~~-----r~g~aa----~g~a~ 254 (395)
T TIGR03204 192 KSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGE------ENKGWDYAKFLLGNE-----RTGIAR----VGVSK 254 (395)
T ss_pred CCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCC------CCchHHHHHHHHHHH-----HHHHHH----HHHHH
Confidence 579999987665555 7789999999999999999985 567777666556666 777653 35554
Q ss_pred -HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q psy2287 82 -AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMS 160 (268)
Q Consensus 82 -al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (268)
+++.+++|+++|++|| +||.++|.+|++|++|.+.++++|++++++.. ...+.+... ....+
T Consensus 255 ~~l~~a~~ya~~R~~fg-------~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~------~~~~~~~~~----~~~~a 317 (395)
T TIGR03204 255 ERIRRIKDLAAKVESGG-------KPVIEDAKFREKLAAVEIELKALELTQLRVVA------DEGKHGKGK----PNPAS 317 (395)
T ss_pred HHHHHHHHHHHHHhhcC-------CccccCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCCCC----CcHHH
Confidence 9999999999999998 59999999999999999999999999887642 111222111 12479
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----------cCccccccc----CChhhhhhhccccccccchhHHHHHHHHHHHHH
Q psy2287 161 CCLKAVSTSDSATFIEVCRRS----------CGGHGYMNS----SNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223 (268)
Q Consensus 161 ~~aK~~a~~~a~~~~~~~~~~----------~Gg~g~~~~----~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~ 223 (268)
+++|.++++.+.++++.++|+ |||.||.++ ++++++|||++...|++|++||++++|++.+|+
T Consensus 318 a~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 318 SVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 999999999999999999985 788899865 469999999999999999999999999999864
No 40
>KOG0138|consensus
Probab=99.92 E-value=9.5e-25 Score=183.55 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=172.3
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLS 80 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~ 80 (268)
|++||++--.+..++++|.+.++.|.+|||+||++++|. .-.++.....+++.. |..+++. .+|+.
T Consensus 236 k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LP-------g~~s~qgpf~cLnna-----R~giAWg--~lGas 301 (432)
T KOG0138|consen 236 KGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLP-------GASSLQGPFGCLNNA-----RYGIAWG--ALGAS 301 (432)
T ss_pred cCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCC-------CccccCCchhhhhhh-----hhheeeh--hchhH
Confidence 578999999999999999999999999999999999996 345677777888888 9999999 78887
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH
Q psy2287 81 K-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAM 159 (268)
Q Consensus 81 ~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 159 (268)
. +++.+.+|+..|+||| .|++.+|.+|.+|++|..++...-.++.++..+. |++... ...
T Consensus 302 e~c~~~arqY~ldRkQFG-------~PLAanQL~Q~Kladmltei~lgl~~clrl~rLk-------d~g~~t-----p~q 362 (432)
T KOG0138|consen 302 EFCLHTARQYTLDRKQFG-------RPLAANQLIQKKLADMLTEITLGLQACLRLGRLK-------DQGKAT-----PEQ 362 (432)
T ss_pred HHHHHHHHHHHHHHHHhC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hcccCC-----hhh
Confidence 6 9999999999999998 6999999999999999999998888877665544 555532 448
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHH
Q psy2287 160 SCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKA 224 (268)
Q Consensus 160 ~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~ 224 (268)
+++.|.+.+-.+.+++..+.+++||.|+.+++.+.|++-|....-+||||-||+..+++|.+.+.
T Consensus 363 iSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGi 427 (432)
T KOG0138|consen 363 ISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGI 427 (432)
T ss_pred hHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999998775
No 41
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.91 E-value=1.2e-23 Score=166.12 Aligned_cols=149 Identities=21% Similarity=0.174 Sum_probs=133.3
Q ss_pred CceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHH
Q psy2287 48 GTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYA 126 (268)
Q Consensus 48 g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a 126 (268)
|.||..+...+..+ |+.+++. ..|..+ +++.+.+|++.|++|| +++.++|.++.+|+++.+++++
T Consensus 1 g~G~~~~~~~l~~~-----R~~~~~~--~~g~~~~~l~~a~~~~~~r~~~g-------~~l~~~~~v~~~la~~~~~~~a 66 (150)
T PF00441_consen 1 GQGWAVALDTLNHE-----RLMIAAM--ALGIARRALDEAIEYARRRRQFG-------KPLAEHPAVRRRLADMAARLEA 66 (150)
T ss_dssp TBHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHTEETT-------EEGGGSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHhccccc-------CcccchhhhHHHHHhhccchhh
Confidence 46778787778888 9999988 556655 9999999999999997 5999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccc
Q psy2287 127 LRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETY 206 (268)
Q Consensus 127 ~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~ 206 (268)
++++++++...+ +.+... ...++++|+++++.+.++++.+++++|+.|+.++++++++|||++...++
T Consensus 67 ~~~~~~~~~~~~-------~~~~~~-----~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~ 134 (150)
T PF00441_consen 67 MRALVYRAARRL-------DAGQND-----PVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIY 134 (150)
T ss_dssp HHHHHHHHHHHH-------HTTSST-----HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTS
T ss_pred hhcccccccccc-------cccccc-----ccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeec
Confidence 999988765533 555432 66889999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHH
Q psy2287 207 EGENTVLYLQTARFLI 222 (268)
Q Consensus 207 ~Gt~~v~~~~ia~~ll 222 (268)
+|++||+++.|++.+|
T Consensus 135 ~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 135 GGTNEVQRNQIARRLL 150 (150)
T ss_dssp TSTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999999986
No 42
>KOG1469|consensus
Probab=99.87 E-value=1e-21 Score=163.12 Aligned_cols=195 Identities=16% Similarity=0.227 Sum_probs=173.7
Q ss_pred CCCCCeEEcccCCCCCCCCC--CceEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHH
Q psy2287 1 MPLPGISIGEIGSKLGMNTV--NNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAF 78 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt--~s~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g 78 (268)
|++|||.|.+...+.|.... +..+|.|+||+||..|++-. +|.|+.+....+-.+ |+..|.- ..|
T Consensus 187 M~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLG------eGrGFEIaQGRLGPG-----RiHHcMR--liG 253 (392)
T KOG1469|consen 187 MNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLG------EGRGFEIAQGRLGPG-----RIHHCMR--LIG 253 (392)
T ss_pred cCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeec------CCCcceeeccccCCc-----HHHHHHH--Hhh
Confidence 68999999999889998765 67899999999999998743 799999999999989 9999999 666
Q ss_pred HH-HHHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHH
Q psy2287 79 LS-KAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELH 157 (268)
Q Consensus 79 ~~-~al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 157 (268)
.+ ++++...+.+..|..|| +++..+..+...|++...+++.+|+++.+++..++.. |. +...
T Consensus 254 ~aERal~lm~~R~~sRiaFg-------k~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~------G~----k~Ak 316 (392)
T KOG1469|consen 254 LAERALQLMKERALSRIAFG-------KKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTL------GN----KGAK 316 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------chhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhh------cc----hhhh
Confidence 65 59999999999999998 5999999999999999999999999998877666421 22 3356
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchhHHHHHHHHHHHHHHH
Q psy2287 158 AMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAW 225 (268)
Q Consensus 158 ~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~~~ia~~ll~~~ 225 (268)
...++.|..+..++..+.+.++|.+||.|+..+.|+.++|.-++++++.+|..+++...|++.-+..-
T Consensus 317 ~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~~~ 384 (392)
T KOG1469|consen 317 KEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELRDQ 384 (392)
T ss_pred hheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998776653
No 43
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.81 E-value=1.1e-19 Score=168.80 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=121.6
Q ss_pred eEEEecceecCccccccccCccCCCCceeecCCcccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCC
Q psy2287 23 GYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSK-AVTIATRYSAVRRQSEMKPG 101 (268)
Q Consensus 23 ~~v~fddV~VP~~~~lg~~~~~~~~g~g~~~~~~~l~~~~~~~~R~~laa~~~~~g~~~-al~~a~~~~~~R~~~g~~~~ 101 (268)
++|+|||| |.+++||. +|.|++..+..++.+ |+.+++. +.|+++ +++.+++|++
T Consensus 219 ~eV~FddV--P~~~vLG~------~g~G~~~a~~~L~~~-----Rl~~aA~--~vGia~~ale~av~ya~---------- 273 (520)
T PTZ00457 219 DSVVFENT--PAADVVGV------VGEGFKDAMITLFTE-----QYLYAAS--LLGIMKRVVQELRGSNA---------- 273 (520)
T ss_pred CEEEECCC--CHHHhCCC------CCchHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHH----------
Confidence 79999997 99999986 788998888888888 9999998 777766 9999999874
Q ss_pred CCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHH---HHHHHHHHHH
Q psy2287 102 EREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVST---SDSATFIEVC 178 (268)
Q Consensus 102 ~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~---~~a~~~~~~~ 178 (268)
+|.+|++|++|.+.++++|++++.+.. ..|.+.. +...+++++|+|++ +.+..+++.+
T Consensus 274 --------~QaVq~~LAdma~~ieAarsl~y~AA~-------~~D~g~~----d~~~eAa~ak~~~s~~~e~~~~~~~~~ 334 (520)
T PTZ00457 274 --------EEGATDTVASFACAMYAMESTLYALTA-------NLDLPTE----DSLLECTLVSAFVQSTTNQLLSILETA 334 (520)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCCc----ccHHHHHHHHHHhhhhHHHHHHHhhhh
Confidence 267999999999999999999877554 4466542 25789999999999 8888888888
Q ss_pred HHHcCcccccccCChhhhhhhccccccccchhHHHH
Q psy2287 179 RRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLY 214 (268)
Q Consensus 179 ~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~~v~~ 214 (268)
+| .++|+||++||++.+.|++|++|+++
T Consensus 335 ~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 335 TP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred cc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 77 78999999999999999999999999
No 44
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.75 E-value=2.3e-17 Score=128.14 Aligned_cols=131 Identities=20% Similarity=0.074 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2287 69 SLVKNVAAAFLSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEK 147 (268)
Q Consensus 69 ~laa~~~~~g~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~ 147 (268)
.+++. ++|+++ ++++++++++.|...+ +. .++.++|.+|.+|+++.+.++++++++++.++.+++.. +.
T Consensus 2 ~~aa~--~lG~A~~al~~~~~~~~~r~~~~---~~--~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~---~~ 71 (134)
T PF08028_consen 2 SFAAV--YLGIARGALDEFVEYLRGRVRAS---GG--APLADDPYIQARLGEAAARLDAARALLYRAARRLWEAA---DA 71 (134)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHTT---TT--SBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHhcCCCC---CC--CchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc
Confidence 45666 888887 9999999999888722 12 59999999999999999999999999999988877654 44
Q ss_pred CCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCcccccccCChhhhhhhccccccccchh
Q psy2287 148 GNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGEN 210 (268)
Q Consensus 148 g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rDa~~~~i~~Gt~ 210 (268)
++.. .++........|.++++.|.++++.+++++|+.+++..+||+|+|||+++...|...+
T Consensus 72 g~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 72 GEEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred cCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 4432 2667889999999999999999999999999999999999999999999999887654
No 45
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.60 E-value=8.4e-15 Score=135.72 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=118.7
Q ss_pred CCCCCeEEcccCCCCCCCCC-----------CceEEEecceecCcccc--ccccCccCCC---CceeecCCcccchhhhh
Q psy2287 1 MPLPGISIGEIGSKLGMNTV-----------NNGYLGFKNVRIPRNNM--LMKNAQVLKD---GTYVKSKNDKLTYGTMI 64 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt-----------~s~~v~fddV~VP~~~~--lg~~~~~~~~---g~g~~~~~~~l~~~~~~ 64 (268)
+++|||++.....++|.++. ..+.|+|||||||.+++ +|. . +.++.... .
T Consensus 220 ~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~------~e~a~~~f~~~~-----~--- 285 (477)
T TIGR02309 220 TNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGD------VELCNNAYAATG-----A--- 285 (477)
T ss_pred CCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCC------HHHHHHHHHHHH-----H---
Confidence 58999999988889998876 67999999999999999 774 2 44333221 1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2287 65 FVRVSLVKNVAAAFLSK-AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNA 143 (268)
Q Consensus 65 ~~R~~laa~~~~~g~~~-al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~ 143 (268)
++..+.. ++|... +++.++.|+.. ..++ .++.++|.+|.+|+++.+.+++++++++.+..
T Consensus 286 --~~~~~~~--~~g~~~~~ld~~~g~a~~-~a~~-------~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~------- 346 (477)
T TIGR02309 286 --VNHMAHQ--VVALKIAKTEAFLGVAAL-MAEG-------IGADGFQHVQEKIAEIIVYLEAMKAFWTRAEE------- 346 (477)
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHH-HHHh-------hCcccchHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3444555 555655 89999999998 7776 48999999999999999999999999776433
Q ss_pred hhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCcccccc
Q psy2287 144 DLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGHGYMN 189 (268)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g~~~ 189 (268)
..+.+...........++++|.++++...++. +++|++||.|+..
T Consensus 347 ~~~~~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 347 EAKENAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred cCCcCCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 33442210000024688999999999999995 9999999999864
No 46
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.45 E-value=0.0015 Score=59.81 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=55.0
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCcc
Q psy2287 106 QILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGH 185 (268)
Q Consensus 106 ~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~ 185 (268)
-+.++++||.+|+||.+-.+.+.++...+... +.....|-.- | -...+...|.++.+.-.++.+.+.++.||.
T Consensus 323 Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~----a~~~~~G~~~--P-n~~~~n~~r~~~~~~~~~~~~~l~~i~gg~ 395 (493)
T COG2368 323 GVEEFRHIQEKLGEMIALLELMWALSDAAAEE----AQKNPNGAWL--P-NPAYANVGRVYAPKAYPRIKEILQDISGGG 395 (493)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCCCcee--c-CHHHHhhHHHhcccchHHHHHHHHHHhcCc
Confidence 35688999999999999999999986543210 0011122211 1 255788999999999999999999999876
Q ss_pred cccc
Q psy2287 186 GYMN 189 (268)
Q Consensus 186 g~~~ 189 (268)
-...
T Consensus 396 ~i~l 399 (493)
T COG2368 396 IITL 399 (493)
T ss_pred eeec
Confidence 5543
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=97.13 E-value=0.01 Score=55.93 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=49.4
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCcc
Q psy2287 107 ILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGH 185 (268)
Q Consensus 107 l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~ 185 (268)
+.+++.||.+|+|+....+.++++...+.. .......|..- | -.......|.+.++.--++.+.+.+++||.
T Consensus 328 ~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~----~~~~~~~G~~~--P-~~~~~~a~r~~~~~~y~r~~eil~~~~agG 399 (519)
T TIGR02310 328 VLEFRGVQAQMGEVVAWRNLFWTLTDAMAG----SAYQWKNGAQL--P-SAQALQTYRVMAPMAYHTIKKIIEQTVTSG 399 (519)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHh----cCccCCCCeEe--e-CHHHHHHHHHHhhhhhHHHHHHHHHHccCC
Confidence 447899999999999999999998654221 00000112211 1 144678899999999999999888666643
No 48
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=91.26 E-value=1.6 Score=36.21 Aligned_cols=76 Identities=17% Similarity=-0.036 Sum_probs=53.9
Q ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCccc
Q psy2287 107 ILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGHG 186 (268)
Q Consensus 107 l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~g 186 (268)
+.++|.||.+|+|+....+.+++++..+.. .......|..- | .......+|.+.++.--++++.+.+++||.-
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~----~a~~~~~G~~~--P-~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEA----EAEPDPSGVYV--P-NPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHH----T-EE-TTSSEE-----HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHh----cCccCCCCeEe--E-CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 457899999999999999999999754221 00001122211 1 2457889999999999999999999998876
Q ss_pred ccc
Q psy2287 187 YMN 189 (268)
Q Consensus 187 ~~~ 189 (268)
+..
T Consensus 117 i~~ 119 (205)
T PF03241_consen 117 ITL 119 (205)
T ss_dssp TC-
T ss_pred eeC
Confidence 553
No 49
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=78.55 E-value=14 Score=35.24 Aligned_cols=83 Identities=18% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHHHHHhhhccccCCCCCCCCCccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHh
Q psy2287 82 AVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSC 161 (268)
Q Consensus 82 al~~a~~~~~~R~~~g~~~~~~~~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (268)
.|..++++.-.|. | +.|.+.|.+..||+++.+.++++-+.+-++ ...+..+.+. ...+..
T Consensus 417 ~~~~~v~~~~~~~--~-------~~i~~~q~~l~rlad~a~~lyam~a~~sra-------~~~~~~~~~~----~~~e~~ 476 (520)
T PTZ00457 417 AFGNAVEATFVRS--G-------SQVPYQQLLLNRLGEAASLLYAASAVASRA-------SMCVSKGLPS----AKVEGE 476 (520)
T ss_pred HHHHHHHHHHHHH--H-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCCc----hHHHHH
Confidence 3455555555554 2 388999999999999999999999975443 2233455432 234456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Q psy2287 162 CLKAVSTSDSATFIEVCRRSCGG 184 (268)
Q Consensus 162 ~aK~~a~~~a~~~~~~~~~~~Gg 184 (268)
+++.|+.+...++-..+-+++..
T Consensus 477 la~~fc~~a~~rv~~~~~~~~~~ 499 (520)
T PTZ00457 477 LASAFIAMAVSRARQLSEESCNV 499 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999998888877777777765
No 50
>KOG0137|consensus
Probab=66.81 E-value=1.3e+02 Score=29.16 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=53.0
Q ss_pred ccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCc
Q psy2287 105 PQILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGG 184 (268)
Q Consensus 105 ~~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg 184 (268)
+.+.+.|.+-+||++..+.++++-+.+-++.+. ...|-+ ....+...+++|++|....+...+-++.++
T Consensus 535 k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS-------~~igl~----~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 535 KGIVEEQSVLQRLANVAINIYAMVAVISRASRS-------YSIGLP----NADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHH-------HhcCCc----chhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 378899999999999999999999886554433 344432 256788888899999888887777777665
No 51
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=35.39 E-value=28 Score=23.05 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCC---Cccccchhccc
Q psy2287 209 ENTVLYLQTARFLIKAWNQLKSGG---LLSSTVTYLGK 243 (268)
Q Consensus 209 t~~v~~~~ia~~ll~~~~~~~~~~---~~~~~~~~~~~ 243 (268)
++-|+...-|+.+|...+..++.| +-.|+.+|+-+
T Consensus 5 ~sPil~Ek~AKqlLRsrR~dr~~K~GfpdepmrE~ml~ 42 (75)
T PF15076_consen 5 ASPILTEKQAKQLLRSRRQDRPRKPGFPDEPMREYMLH 42 (75)
T ss_pred cCccccHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHH
Confidence 466788899999999887766665 45678888643
No 52
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.25 E-value=59 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.4
Q ss_pred ccchhccccCCCCccccCCHHHHHHHH
Q psy2287 236 STVTYLGKIGAPKSQYVHSLDSLLQAY 262 (268)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
-+.+||.++|++.++-..+-+.|++.-
T Consensus 8 ~L~~wL~~~gi~~~~~~~~rd~Ll~~~ 34 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPKSAKTRDELLKLA 34 (38)
T ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 367899999999987556888888753
No 53
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=24.80 E-value=4.7e+02 Score=26.53 Aligned_cols=98 Identities=9% Similarity=-0.017 Sum_probs=53.7
Q ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHcCcc
Q psy2287 106 QILDYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCGGH 185 (268)
Q Consensus 106 ~l~~~~~vq~~la~~~a~~~a~ra~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~aK~~a~~~a~~~~~~~~~~~Gg~ 185 (268)
.+...+.+..||+++.+.++++-+.+.+.. ++|.+. ....++++++.+...++-..+-++....
T Consensus 562 ~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~----------~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~n~ 625 (777)
T PRK09463 562 SLKRRERLSARLGDILSQLYLASAVLKRYE----------DEGRPE------ADLPLVHWAVQDALYQAEQALDGLLRNF 625 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 788889999999999999999998765421 445431 1234444444443333322222333221
Q ss_pred cccccCChhhhhhhc--cccccccchhHHHHHHHHHHHH
Q psy2287 186 GYMNSSNFPNTYGMV--TAAETYEGENTVLYLQTARFLI 222 (268)
Q Consensus 186 g~~~~~~l~r~~rDa--~~~~i~~Gt~~v~~~~ia~~ll 222 (268)
. ...+...+|-. .....+.+.+|-+...+++.++
T Consensus 626 p---~~~~~~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~ 661 (777)
T PRK09463 626 P---NRVVAGLLRVLVFPLGRRYRAPSDKLDHQVAKLLQ 661 (777)
T ss_pred C---chHHHHHHHHeeeCCCCCCCCCCHHHHHHHHHHHh
Confidence 1 11122233322 1123455777777777777776
No 54
>PF08741 YwhD: YwhD family; InterPro: IPR014852 The members of this entry are currently uncharacterised. They are around 170 amino acids in length.
Probab=21.06 E-value=1.1e+02 Score=24.13 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=25.1
Q ss_pred CCCCCeEEcccCCCCCCCCCCceEEEecce
Q psy2287 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNV 30 (268)
Q Consensus 1 ~~~pGvti~~~~~~~G~rgt~s~~v~fddV 30 (268)
|...|++|...-.+-|-.|.+.+.|.++||
T Consensus 1 kk~~~fnIi~~d~tdgH~G~g~Gsi~L~nv 30 (163)
T PF08741_consen 1 KKKIGFNIIKNDSTDGHGGFGAGSISLNNV 30 (163)
T ss_pred CCCcceEEecCCCCCCCCCcceeeEecccc
Confidence 456789998776677888999999999997
No 55
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=20.70 E-value=33 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=11.7
Q ss_pred EEecceecCccccc
Q psy2287 25 LGFKNVRIPRNNML 38 (268)
Q Consensus 25 v~fddV~VP~~~~l 38 (268)
=+|||++||.+.+.
T Consensus 24 gFFddI~IP~~~L~ 37 (122)
T PF08292_consen 24 GFFDDIFIPPSLLP 37 (122)
T ss_dssp CCEEEEEEECCCC-
T ss_pred cccccEEECHHHCC
Confidence 47999999999887
Done!