RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2287
(268 letters)
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 325 bits (834), Expect = e-108
Identities = 110/230 (47%), Positives = 146/230 (63%), Gaps = 4/230 (1%)
Query: 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKND-KLTY 60
PLPG+++G+IG K+G+N V+NG+L F+NVRIPR N+L + V DGTYV D Y
Sbjct: 219 PLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRY 278
Query: 61 GTMIFVRVSLVKNV---AAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKL 117
G M+ R + AA L KA TIA RYSAVRRQ KP + E QILDY+ QQY+L
Sbjct: 279 GAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRL 338
Query: 118 FPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEV 177
FP +A +YA F+A L ++Y+ + +L +GN L ELHA+S LKAV+T +A I+
Sbjct: 339 FPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQE 398
Query: 178 CRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQ 227
CR +CGGHGY+ + P TYEG+NTVL QTA +L+K + Q
Sbjct: 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQ 448
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase.
Length = 664
Score = 275 bits (705), Expect = 2e-88
Identities = 120/248 (48%), Positives = 168/248 (67%), Gaps = 5/248 (2%)
Query: 1 MPLPGISIGEIGSKLG---MNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDK 57
PLPG+++G+IG K G NT++NG+L F +VRIPR+ MLM+ ++V ++G YV+S +
Sbjct: 215 SPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPR 274
Query: 58 -LTYGTMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYK 116
L YGTM++VR ++V + A+ LS+AV IATRYSAVRRQ + G E Q++DYKTQQ +
Sbjct: 275 QLVYGTMVYVRQTIVAD-ASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSR 333
Query: 117 LFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIE 176
LFP +A++YA RF +WL +Y V LE + LPE HA + LK+++TS +A IE
Sbjct: 334 LFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIE 393
Query: 177 VCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSS 236
CR+ CGGHGY+ SS P + + A TYEG+N VL LQ ARFL+K +QL SG
Sbjct: 394 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVG 453
Query: 237 TVTYLGKI 244
T Y+G++
Sbjct: 454 TTAYMGRV 461
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional.
Length = 646
Score = 180 bits (457), Expect = 2e-52
Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 2/229 (0%)
Query: 2 PLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYG 61
PL G+ +G+IG K+G +NG+L F + RIP +++L + +V +DG + N K++Y
Sbjct: 212 PLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSYA 271
Query: 62 TMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAI 121
+M+++R +L+ + F ++A+T+A RYS R+Q + E +L+Y+TQQ KL P +
Sbjct: 272 SMMYMR-NLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQ-ENSVLEYQTQQQKLLPLL 329
Query: 122 ATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRS 181
A YA F + ++ + ++K + L HA+ KA T + E CR S
Sbjct: 330 AEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLS 389
Query: 182 CGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKS 230
CGGHGY + S P Y ++ T EGEN ++YLQ AR+L+K
Sbjct: 390 CGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQ 438
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 168 bits (427), Expect = 7e-48
Identities = 93/244 (38%), Positives = 139/244 (56%), Gaps = 10/244 (4%)
Query: 3 LPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKS-----KNDK 57
LPG+ I + G K+G+N V+NG L F++VRIPR+N+L + V +DG Y S K
Sbjct: 265 LPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFA 324
Query: 58 LTYGTMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKL 117
T G ++ RV L + L + TIA RYS +R+Q P + E ILDY++QQ+KL
Sbjct: 325 ATLGELVGGRVGLAYG-SVGVLKASNTIAIRYSLLRQQFG-PPKQPEISILDYQSQQHKL 382
Query: 118 FPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEV 177
P +A++YA F+ ++L + Y+ + + + ++HA+S LKA TS +A +
Sbjct: 383 MPMLASTYAFHFATEYLVERYSEMKKTHDDQLVA---DVHALSAGLKAYITSYTAKALST 439
Query: 178 CRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSST 237
CR +CGGHGY + F + +T+EG+NTVL Q A L+K + + GG LS T
Sbjct: 440 CREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVT 499
Query: 238 VTYL 241
YL
Sbjct: 500 WNYL 503
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase.
Length = 680
Score = 127 bits (322), Expect = 2e-33
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 25/231 (10%)
Query: 3 LPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDK----- 57
P I I + G K+G+N V+NG + F N+RIPR N+L A V DG YV + D
Sbjct: 270 CPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFG 329
Query: 58 -----LTYGTMIFVRVSLVKNVAAAFLSK-AVTIATRYSAVRRQSEMKPGEREPQILDYK 111
LT G RV++ V+A + SK + IA RYS RR + P E +LDY
Sbjct: 330 AFLAPLTSG-----RVTIA--VSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYP 382
Query: 112 TQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDS 171
+ Q +L P +A +YA+ F+A+ L IY + K +H +S KAV T +
Sbjct: 383 SHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESNKA-------IHVVSSGFKAVLTWHN 435
Query: 172 ATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLI 222
++ CR +CGG G + T+EG+N VL Q ++ L+
Sbjct: 436 MRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALL 486
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA
dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases
(AXO) catalyze the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes all
share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 83.5 bits (207), Expect = 1e-18
Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 36/219 (16%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTM 63
PG+++G I K+GM G L F +VR+P +N+L + +L +
Sbjct: 142 PGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGF-----------ELAMKGL 190
Query: 64 IFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIAT 123
R+ L A A+ A Y+ R+Q G + +++ Q+KL A
Sbjct: 191 NVGRLLLAAVALGA-ARAALDEAVEYAKQRKQ----FG---KPLAEFQAVQFKLADMAAE 242
Query: 124 SYALR---FSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRR 180
A R + A WL D G E + K +T + ++ +
Sbjct: 243 LEAARLLLYRAAWLLD--------------QGPDEARLEAAMAKLFATEAAREVADLAMQ 288
Query: 181 SCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTAR 219
GG GY AA EG + L AR
Sbjct: 289 IHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 51.0 bits (122), Expect = 2e-07
Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 31/220 (14%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTM 63
PG+S+G I K+G+ G + F +VR+P N+L + T+
Sbjct: 200 PGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLL---GEEGDGFKIAME--------TL 248
Query: 64 IFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIAT 123
R+ + A A+ A Y+ R+Q G I D++ Q+KL A
Sbjct: 249 NVERLGIAA-QALGIAEAALEEAVAYARERKQF----GRP---IADFQLVQFKLADMAAE 300
Query: 124 SYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRSCG 183
A R ++ ++ + + M K +T + + + G
Sbjct: 301 LEAARLLVLRAAELADAGDDAGAEAAM------------AKLFATEAALEVADEAVQVHG 348
Query: 184 GHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223
G+GY Y YEG + + L AR L+
Sbjct: 349 GYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLG 388
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 35.4 bits (82), Expect = 0.024
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
G+S +I K + G + NV +P N+L
Sbjct: 195 KGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLL 229
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 34.6 bits (80), Expect = 0.049
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+S+G+ KLG+ + L F++VR+P+ N+L
Sbjct: 182 RDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENIL 219
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 32.4 bits (74), Expect = 0.24
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG S + KLGM N L F++ +P N+L
Sbjct: 188 PGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENIL 222
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 31.7 bits (72), Expect = 0.40
Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 31/215 (14%)
Query: 5 GISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMI 64
G++ G K+G+ N + F++V+IP N+L + K+ +
Sbjct: 217 GVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGE-----------VGDGFKVAMNILN 265
Query: 65 FVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATS 124
R + + + + + A Y+ R+Q K I ++ Q KL
Sbjct: 266 NGRFGMGAALIGT-MKRCIEKAVDYANNRKQFGKK-------IHEFGLIQEKLANMAILQ 317
Query: 125 YALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFI-EVCRRSCG 183
YA A S N D G E + + V S++A + + + G
Sbjct: 318 YATESMA-----YMTSGNMD-----RGLKAEYQ-IEAAISKVFASEAAWLVVDEAIQIHG 366
Query: 184 GHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTA 218
G G+M + +EG N +L L A
Sbjct: 367 GMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIA 401
>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family. Biogenesis of Fe/S
clusters involves a number of essential mitochondrial
proteins. Erv1p of Saccharomyces cerevisiae mitochondria
is required for the maturation of Fe/S proteins in the
cytosol. The ALR (augmenter of liver regeneration)
represents a mammalian orthologue of yeast Erv1p. Both
Erv1p and full-length ALR are located in the
mitochondrial intermembrane an d it thought to operate
downstream of the mitochondrial ABC transporter.
Length = 95
Score = 28.4 bits (64), Expect = 1.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 118 FPAIATSYALRFS-----ADWLWDIYNSVNADLEK 147
F I + S + WL + +N VNA L K
Sbjct: 46 FQKILAKNPPQVSSRDDLSLWLCEAHNEVNARLGK 80
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 29.8 bits (67), Expect = 1.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+ +I +K+G+ V NG + K+V +P + L
Sbjct: 211 PGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRL 245
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 29.0 bits (65), Expect = 2.6
Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 41/190 (21%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSK--NDKLTYG 61
PG S G K+G + L F + R+P N+L + K Y+ ++L
Sbjct: 185 PGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLL---GEENKGFYYLMQNLPQERLLIA 241
Query: 62 TMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYK---LF 118
A A + Y +R++ K + + ++K L
Sbjct: 242 AG-----------ALAAAEFMLEETRNY-VKQRKAFGKT------LAQLQVVRHKIAELA 283
Query: 119 PAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVC 178
+A + A + N + G L A K +T C
Sbjct: 284 TKVAVTRAF---------LDNCAWRHEQ----GRLDVAEA--SMAKYWATELQNRVAYEC 328
Query: 179 RRSCGGHGYM 188
+ GG GYM
Sbjct: 329 VQLHGGWGYM 338
>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 28.7 bits (64), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 186 GYMNSSNFPNTYGMVTAAETYEG 208
G N S++ N YGM+ A TYEG
Sbjct: 361 GVQNHSHYHNVYGMLMARSTYEG 383
>gnl|CDD|206221 pfam14051, Requiem_N, N-terminal domain of DPF2/REQ. This putative
domain has been detected on the human DPF2 protein and
was subsequently targeted for structure determination by
the Joint Center for Structural Genomics (JCSG).
Possibly, the C-terminus extends by 30 amino acids and
forms a separate domain. DPF2 interacts with estrogen
related receptor alpha (Err-alpha), an orphan receptor
which acts as a regulator in energy metabolism. It was
also identified as an adaptor molecule that links
nuclear factor kappa-light-chain-enhancer of activated B
cells (NF-kappa-B) dimer RelB/p52 and
switch/sucrose-nonfermentable (SWI/SNF) chromatin
remodeling factor.
Length = 74
Score = 26.5 bits (59), Expect = 4.8
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 78 FLSKAVTIATRYSAV-RRQSEMKPGEREPQILDYKTQQYK 116
FL +A R+S + + + PG R QI Y +++++
Sbjct: 30 FLDSQTGVAQRHSYLWMNKRQRMPGNRPGQIYTYPSRRWR 69
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA
dehydrogenase (IBD) catalyzes the alpha, beta-
dehydrogenation of short branched chain acyl-CoA
intermediates in valine catabolism. It is predicted to
be a homotetramer.
Length = 375
Score = 27.8 bits (62), Expect = 6.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQ 43
PG+S G K+G N + F++ R+P N L Q
Sbjct: 185 PGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQ 224
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 27.2 bits (60), Expect = 9.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQ 43
M LPGI+ G + G + F+NVR+P ++ML Q
Sbjct: 184 MDLPGITRNRFDC-HGQRAIGRGSIFFENVRVPADHMLGNEGQ 225
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.383
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,000,289
Number of extensions: 1166502
Number of successful extensions: 991
Number of sequences better than 10.0: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 26
Length of query: 268
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 173
Effective length of database: 6,723,972
Effective search space: 1163247156
Effective search space used: 1163247156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)