RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2287
(268 letters)
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 315 bits (808), Expect = e-104
Identities = 146/278 (52%), Positives = 190/278 (68%), Gaps = 12/278 (4%)
Query: 1 MPLPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTY 60
PLPGI++G+IG K G ++NGYL N RIPR NMLMK AQV DGTYVK ++KLTY
Sbjct: 216 KPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTY 275
Query: 61 GTMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPA 120
GTM+FVR LV N AA LSKA TIA RYSAVRRQSE+K E EPQILD++TQQYKLFP
Sbjct: 276 GTMVFVRSFLVGN-AAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPL 334
Query: 121 IATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRR 180
+AT+YA F ++ + Y +N + +G++ LPELHA++ LKA +T + IE CR
Sbjct: 335 LATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRM 394
Query: 181 SCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSSTVTY 240
+CGGHGY +SS PN Y T A T+EGENTV+ LQTARFL+K ++Q++SG L+ V+Y
Sbjct: 395 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSY 454
Query: 241 LGKIGAPKSQY-----------VHSLDSLLQAYQQVAA 267
L + + + Q ++SL+ L +AY+ AA
Sbjct: 455 LNDLPSQRIQPQQVAVWPTMVDINSLEGLTEAYKLRAA 492
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 299 bits (767), Expect = 5e-98
Identities = 122/278 (43%), Positives = 177/278 (63%), Gaps = 13/278 (4%)
Query: 2 PLPGISIGEIGSKLG---MNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKND-K 57
PLP I++G+IG+K+G N+++NG+L F +VRIPR+ MLM+ ++V ++G YV S +
Sbjct: 216 PLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQ 275
Query: 58 LTYGTMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKL 117
L YGTM++VR ++V + A+ LS+AV IATRYSAVRRQ G E Q++DYKTQQ +L
Sbjct: 276 LVYGTMVYVRQTIVAD-ASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 334
Query: 118 FPAIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEV 177
FP +A++YA RF +WL +Y V L + LPE HA + LK+++T+ +A IE
Sbjct: 335 FPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEE 394
Query: 178 CRRSCGGHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSST 237
CR+ CGGHGY+ S P + + A TYEG+N VL LQ ARFL+K QL SG + T
Sbjct: 395 CRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGT 454
Query: 238 VTYLGKI--------GAPKSQYVHSLDSLLQAYQQVAA 267
Y+G+ G K++ + D +L+A++ A
Sbjct: 455 TAYMGRAAHLLQCRSGVQKAEDWLNPDVVLEAFEARAL 492
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 6e-07
Identities = 49/264 (18%), Positives = 83/264 (31%), Gaps = 85/264 (32%)
Query: 25 LGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTMIFVRVSLVKNVAAAFLSKAVT 84
GF + I NN N + G K K + Y MIF + + + K +
Sbjct: 1657 YGFSILDIVINN--PVNLTIHFGGE--KGKRIRENYSAMIF-ETIVDGKLKTEKIFKEIN 1711
Query: 85 IATRYSAVRRQSEMKPGEREPQILDYKTQ--QYKLFPAI-ATSYALRFSADWLWDIYNSV 141
+ S E+ +L TQ Q PA+ A +
Sbjct: 1712 EHST-------SYTFRSEKG--LLS-ATQFTQ----PALTLMEKA----------AF--- 1744
Query: 142 NADLEKGNMGGLPEL-----H------AMSCCLKAVSTSDSATFIE-VCRR-----SCGG 184
DL+ G +P H A++ +S +E V R
Sbjct: 1745 -EDLKS--KGLIPADATFAGHSLGEYAALASLADVMSIESL---VEVVFYRGMTMQVAVP 1798
Query: 185 HGYMNSSNFPNTYGMV-----TAAETYEGENTVLYLQTARFLIKAWNQLKSGGLLSSTVT 239
+ SN YGM+ A ++ E +++++ + ++G L+ V
Sbjct: 1799 RDELGRSN----YGMIAINPGRVAASFSQE-------ALQYVVERVGK-RTGWLV-EIVN 1845
Query: 240 YLGKIGAPKSQYV-----HSLDSL 258
Y QYV +LD++
Sbjct: 1846 Y----NVENQQYVAAGDLRALDTV 1865
Score = 40.4 bits (94), Expect = 6e-04
Identities = 41/304 (13%), Positives = 83/304 (27%), Gaps = 110/304 (36%)
Query: 24 YLGFKNVRIPRNNMLMKNAQVLK------DGTYVKSKNDKLTYGTMI--FVRVSLVKNVA 75
+LG+ + + + + + QVL + Y++ ND I L++
Sbjct: 64 FLGYVSSLVEPSK-VGQFDQVLNLCLTEFENCYLEG-ND-------IHALA-AKLLQEND 113
Query: 76 AAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDYKTQQYKLFPAIATS----YALRF-- 129
+ I +A R +P +++ LF A+ A+ F
Sbjct: 114 TTLVKTKELIKNYITA--RIMAKRPFDKKSN--------SALFRAVGEGNAQLVAI-FGG 162
Query: 130 ---SADW------LWDIYNSVNADL----------------------EKG--------NM 150
+ D+ L+ Y+ + DL +G N
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 151 GGLPELHAMSCCLKAVS------TSDSATFIEVCRRSCGGHGYMNSSNFPNTYGMVTAAE 204
P+ + +S A ++ + G+ G ++
Sbjct: 223 SNTPDKDYLLSI--PISCPLIGVIQ-LAHYVVTAKL----LGFTPGELRSYLKGATGHSQ 275
Query: 205 TYEGENTVLYLQTARFLIKA--WNQLKSGGLLSSTVTYLGKIGAPKSQYVHSLDSLLQAY 262
L TA + + W + +T L IG + +AY
Sbjct: 276 G---------LVTAVAIAETDSWESFFV--SVRKAITVLFFIGV-RCY---------EAY 314
Query: 263 QQVA 266
+
Sbjct: 315 PNTS 318
Score = 32.7 bits (74), Expect = 0.12
Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 88/221 (39%)
Query: 74 VAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQILDY------KTQQYKLFPAIATSYAL 127
V A +++ + + + +VR + + + + +P + +L
Sbjct: 278 VTAVAIAETDSWESFFVSVR------------KAITVLFFIGVRCYEA--YP----NTSL 319
Query: 128 RFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCRRS--CGGH 185
S + LE G+P M ++ ++ G
Sbjct: 320 PPSI---------LEDSLENNE--GVP--SPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 186 GYM---NS-SNF-----PNT-YGMVTA-----AETYEGENTVLYLQ-----TARFLIKAW 225
+ N N P + YG+ A + ++ + + + + RFL
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---- 421
Query: 226 NQLKSGGLLSSTVTYLGKIGAPKSQYVHSLDSLLQ-AYQQV 265
+ +P HS LL A +
Sbjct: 422 -----------------PVASP----FHS--HLLVPASDLI 439
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 40.7 bits (96), Expect = 3e-04
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKD 47
PG + I SK+ + L VR+P + L A L
Sbjct: 211 PGFTANTIKSKMSLRASVTSELVLDGVRLPDSARL-PGATSLGA 253
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 40.3 bits (95), Expect = 4e-04
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKD 47
PG+ +I +K+G+ V NG + +NV +P + L +D
Sbjct: 237 PGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL-PGVNSFQD 279
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 39.9 bits (94), Expect = 5e-04
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKD 47
G+S I K + G + V +P N+L A L
Sbjct: 197 RGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL-PGASSLGG 239
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKD 47
PG + EI KL + L NVR+P + L A+ L
Sbjct: 206 PGFTANEIHRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLSA 248
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 40.1 bits (94), Expect = 5e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
GI+ G K+G+ N + F VR+P N+L
Sbjct: 241 GGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVL 275
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 39.5 bits (93), Expect = 6e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKD 47
PG E+ K+ + L + VR+P + L A LK
Sbjct: 194 PGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKA 236
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 39.5 bits (93), Expect = 7e-04
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
G+S I K+G+ G + +P N+L
Sbjct: 204 KGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 238
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 38.7 bits (91), Expect = 0.001
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+ + + G + L VR+P +L
Sbjct: 173 PGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVL 207
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 38.3 bits (90), Expect = 0.002
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+S G+ K+G++ V + N RI + +
Sbjct: 199 PGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRI 233
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 38.4 bits (90), Expect = 0.002
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
+ + G +V+ ++ + NVR+P N+L
Sbjct: 222 GSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVL 256
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 38.2 bits (90), Expect = 0.002
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMK 40
PG +I K+G L F++V++P N L +
Sbjct: 190 PGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGE 226
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG + G+ K+G++T L F++V++P NML
Sbjct: 195 PGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENML 229
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 37.9 bits (89), Expect = 0.002
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+S G+ K+G N+ + F++ +P N +
Sbjct: 203 PGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRI 237
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+++G+ KLG+ + L F++ RIP++++L
Sbjct: 192 PGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSIL 226
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 38.0 bits (89), Expect = 0.002
Identities = 24/194 (12%), Positives = 50/194 (25%), Gaps = 38/194 (19%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMKNAQVLKDGTYVKSKNDKLTYGTM 63
PG+++ + LGM + F + + +L + G + T
Sbjct: 195 PGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERG----PVGARRDAVLAGQTVS-- 248
Query: 64 IFVRVSLVKNVAAAFL---SKAVTIATRYSAVRRQSEMKP-GEREPQILDYKTQQYKLFP 119
+++ + A IA + A R +P + T+
Sbjct: 249 ---SITM----LGIYAGIAQAARDIAVGFCAGRGG---EPRAGARALVAGLDTR------ 292
Query: 120 AIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCC-LKAVSTSDSATFIEVC 178
+ +A D + + G + + ++ A V
Sbjct: 293 -LYALRTTVGAALTNADAASVDLSGDPDER--GRRMMTPFQYAKMTV---NELAP--AVV 344
Query: 179 RRS---CGGHGYMN 189
GG Y
Sbjct: 345 DDCLSLVGGLAYTA 358
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 37.8 bits (89), Expect = 0.002
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+S G K+G++ + + + V +P N+L
Sbjct: 184 PGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLL 218
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 37.5 bits (88), Expect = 0.003
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
G+ +G KLG+ + L +++ +P +L
Sbjct: 197 RGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALL 231
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 37.5 bits (88), Expect = 0.003
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
G ++G KLG+ L F+N RIP + ++
Sbjct: 204 EGFTVGPKERKLGIKGSPTTELYFENCRIPGDRII 238
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 37.5 bits (88), Expect = 0.003
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG S + KLGM N L F++ +IP N+L
Sbjct: 203 PGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANIL 237
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 36.7 bits (86), Expect = 0.005
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PGI IG +G + + F++V++P+ N+L
Sbjct: 204 PGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVL 238
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 36.5 bits (85), Expect = 0.006
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+S G K+G+ + + ++V++P N+L
Sbjct: 212 PGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVL 246
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 36.4 bits (85), Expect = 0.007
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG+ IG+ +KLG+ + L F+NV++P N+L
Sbjct: 214 PGLHIGKPENKLGLRASSTCPLTFENVKVPEANIL 248
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 36.6 bits (85), Expect = 0.007
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
G+S K+G+ + L ++ +P+ N+L
Sbjct: 217 AGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLL 251
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 36.5 bits (85), Expect = 0.007
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNMLMK 40
PG ++ + LGM + F + IP +++LM+
Sbjct: 206 PGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMR 242
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 35.6 bits (83), Expect = 0.013
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PGI + KLG + G L NV++P+ N+L
Sbjct: 195 PGIKTSNL-EKLGSHASPTGELFLDNVKVPKENIL 228
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 32.1 bits (74), Expect = 0.15
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG + K+G + L F +VR+P +N++
Sbjct: 215 PGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 32.1 bits (74), Expect = 0.16
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG + K+G + + L + +VR+P N++
Sbjct: 212 PGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLV 246
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 31.9 bits (73), Expect = 0.19
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 4 PGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
I G T + + F +P N+L
Sbjct: 224 DAYQILGEPELAGHITTSGPHTRFTEFHVPHENLL 258
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.23
Identities = 32/260 (12%), Positives = 63/260 (24%), Gaps = 82/260 (31%)
Query: 57 KLTYGTMIFVRVSLVKNVAAAFLSKAVTIATRYSAVRRQSEMKPGEREPQ---------- 106
+ Y ++ V F K V + ++ + E+
Sbjct: 15 QYQYKDILSV---FEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 107 -ILDYKTQQYKLF--PAIATSYALRFSADWLWD--------------IYNS-------VN 142
+L + + + F + +Y +L +Y N
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 143 ADLEKGNMG----------GLPEL--------HAMSCCLKAVSTSDSATFIEV-CRRSCG 183
K N+ L EL + K D +V C+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 184 GHGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIKAWNQLKSGGL-----LSSTV 238
++N N + ++ + L Q + W + S
Sbjct: 184 IF-WLNLKNCNSPETVLEMLQK-------LLYQ----IDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 239 TYLGKIGAPKSQYVHSLDSL 258
L ++ K Y + L L
Sbjct: 232 AELRRLLKSK-PYENCLLVL 250
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 31.1 bits (70), Expect = 0.36
Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 13/136 (9%)
Query: 120 AIATSYALRFSADWLWDIYNSVNADLEKGNMGGLPELHAMSCCLKAVSTSDSATFIEVCR 179
++ Y +L + Y + N + + H + L A + +EV
Sbjct: 13 SLEKFYLADTKEQFLNNFYPTENPEEDNKVFNYWWLAHLVEVRLDAYLRTKKQADLEVAE 72
Query: 180 RSCGGHGYMNSSNFPNTY-------GMVTAAETYEGENTVLYLQTAR-----FLIKAWNQ 227
++ + N + + + A Y+ +YL+ A+ + WN
Sbjct: 73 KTYLHNKNRNGGTLIHDFYDDMLWNAL-AAYRLYKATGKSIYLEDAQLVWQDLVDTGWND 131
Query: 228 LKSGGLLSSTVTYLGK 243
+ GG K
Sbjct: 132 IMGGGFAWRRPQMYYK 147
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 30.5 bits (69), Expect = 0.41
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 171 SATFIEVCRRSCGG-------HGYMNSSNFPNTYGMVTAAETYEGENTVLYLQTARFLIK 223
S +E+ + G + +F Y MV +A + + +
Sbjct: 77 SEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIH---HLEDEDKKELYKR 133
Query: 224 AWNQLKSGGLL 234
+++ LK G+
Sbjct: 134 SYSILKESGIF 144
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 30.9 bits (71), Expect = 0.42
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 3 LPGISIGEIGSKLGMNTVNNGYLGFKNVRIPRNNML 38
PG + G K+G++ + L F++ ++P N+L
Sbjct: 196 TPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLL 231
>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET:
FAD; 1.85A {Homo sapiens} PDB: 3r7c_A*
Length = 139
Score = 29.3 bits (65), Expect = 0.68
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 109 DYKTQQYKLFPAIATSYALRFSADWLWDIYNSVNADLEK 147
D + + + P T A WL ++N VN L K
Sbjct: 82 DLRKRLARNHPDTRTRAAF---TQWLCHLHNEVNRKLGK 117
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine
dinucleotide, oxidoreductase; HET: FAD; 2.50A
{Arabidopsis thaliana}
Length = 125
Score = 28.6 bits (63), Expect = 1.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 133 WLWDIYNSVNADLEK 147
WL ++N+VN L K
Sbjct: 80 WLCHVHNTVNRSLGK 94
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical
bundle, CXXC, oxidoreductase; HET: FAD; 1.50A
{Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Length = 117
Score = 28.5 bits (63), Expect = 1.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 133 WLWDIYNSVNADLEK 147
W I+N VN L+K
Sbjct: 78 WGCHIHNKVNEYLKK 92
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle,
cytoplasm, disulfide bond, flavoprotein, late protein;
HET: FAD; 2.10A {African swine fever virus BA71V}
Length = 106
Score = 27.8 bits (61), Expect = 1.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 133 WLWDIYNSVNADLEK 147
W + +N+VN L K
Sbjct: 74 WTFAFHNNVNNRLNK 88
>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase,
helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus
norvegicus} SCOP: a.24.15.1 PDB: 3o55_A*
Length = 125
Score = 28.1 bits (62), Expect = 1.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 133 WLWDIYNSVNADLEK 147
WL ++N VN L K
Sbjct: 89 WLCRLHNEVNRKLGK 103
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 28.4 bits (63), Expect = 3.0
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 5/30 (16%)
Query: 173 TFIEVCRRSCGGH-----GYMNSSNFPNTY 197
+ C + G + S FP Y
Sbjct: 118 EIFKTGSEDCSKNFTSPNGTIESPGFPEKY 147
Score = 26.8 bits (59), Expect = 9.4
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 6/23 (26%)
Query: 181 SCGGH------GYMNSSNFPNTY 197
CGG GY+ S +P Y
Sbjct: 5 PCGGRLNSKDAGYITSPGYPQDY 27
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
1} SCOP: e.58.1.1
Length = 1136
Score = 28.5 bits (63), Expect = 3.2
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 17 MNTVNNGYLGFKNVRIPRNNM--LMKNAQVLKDGTYVKSKND-KLTYGTMIFVRVSLVKN 73
M+ NNG+L K + + + + + +S + + T+ F + VK+
Sbjct: 716 MDMFNNGFLSAKTLTVALSEGAAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKS 775
Query: 74 --VAAAFLSKAVTIATRYSAVRRQSEMKPGERE-----PQILDYKTQQYKLFPAIATSYA 126
+ A + A A A + + KP +R P K +FP +
Sbjct: 776 RVLFAGASANASEAAKARVASLQSAYQKPDKRVDILLGPLGFLLKQFHAAIFPNGKPPGS 835
Query: 127 LRFSADWLW 135
+ + W W
Sbjct: 836 NQPNPQWFW 844
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle,
homodimer, disulfide bond, flavoprot oxidoreductase,
virion; HET: FAD; 1.78A {Acanthamoeba polyphaga
mimivirus}
Length = 114
Score = 27.0 bits (59), Expect = 3.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 133 WLWDIYNSVNADLEK 147
W +D++N+VN LE
Sbjct: 81 WFYDVHNAVNNKLEV 95
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 27.6 bits (62), Expect = 4.3
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 23 GYLGFKNVRIPRNNMLM 39
+ F VR+P N+++
Sbjct: 247 FEIHFNQVRVPATNLIL 263
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 27.3 bits (59), Expect = 6.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 133 WLWDIYNSVNADLEKGNMGGLPE 155
LW +N+VNA L G P
Sbjct: 356 QLWRAHNNVNARLANVKDGADPL 378
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein
structure initiative, NESG, CPR biology; 2.50A
{Clostridium perfringens}
Length = 128
Score = 25.8 bits (56), Expect = 8.9
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 44 VLKDGTYVKSKNDKLTYGTMIFVRVSLVKN 73
+LKDG Y +G + + V +
Sbjct: 1 MLKDGDYTVETAKADDHGYKAKLSIK-VSD 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.383
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,895,854
Number of extensions: 217808
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 55
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)