BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2288
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ C C K F+ L H R HTGEKP++C CGKSFS + L+ H H G KP+ C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 125 QCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDK 184
+CG +F+Q++ LR H+ H + +AC C F+ + L+ HQR+H G KP++C C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 185 TFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+F+R+ + H H G +PY C C K+F +LN H+ +H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 93/171 (54%)
Query: 31 EAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGE 90
E +K AC C F L +H H+ + C C K F++ K L H R HTGE
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFA 150
KP++C CGKSFSQR L +H H G KP+ C +CG +F+Q + LR H+ H + +
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG 201
C C F+ + +L HQR+H G KP++C C K+F+R+ + H H G
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Query: 86 IHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGN 145
+ GEKP+ C CGKSFS+ L+ H H G KP+ C +CG +F+ K L H+ H
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPY 205
+ + C C F+ +++L+ HQR+H G KP+ C C K+F++ ++ H H G +PY
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 206 SCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKGSKLF 243
C C K+F +L+ H+ +H T P + K F
Sbjct: 135 KCPECGKSFSREDNLHTHQRTH-TGEKPYKCPECGKSF 171
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 77/152 (50%)
Query: 24 LCMRKETEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTH 83
L + T +K C C F D+ L +H H+ + C C K F+ +L+ H
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
R HTGEKP+ C CGKSFSQ L +H H G KP+ C +CG +F+++ L H+ H
Sbjct: 97 QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Query: 144 GNIRHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
+ + C C F+ + L HQR+H G K
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
+ A+ G KP+ C +CG +F++ L H+ H + + C C F+ K DL RHQR
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
Query: 170 SHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKT 229
+H G KP++C C K+F+++ ++ H H G +PY+C C K+F L H+ +H T
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-T 129
Query: 230 SADPISSAKGSKLF 243
P + K F
Sbjct: 130 GEKPYKCPECGKSF 143
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 19 SKILALCMRKETEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIK 78
S++ L + T +K C C F E L+ H H+ + C C K F+
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175
Query: 79 SLKTHSRIHTGEK 91
+L H R HTG+K
Sbjct: 176 ALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ C C K F+ +L+ H R HTGEKP++C CGKSFSQ L H H G KP+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 125 QCGHAFTQKSQLRLHEMRHGNIR 147
+CG +F++ L H+ H N +
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHF 149
EKP++C CGKSFSQ L H H G KP+ C +CG +F+Q S L+ H+ H + +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 150 ACNVCPFKFTTKSDLQRHQRSHEGVK 175
C C F+ L RHQR+H+ K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFR 178
KP+ C +CG +F+Q S L+ H+ H + + C C F+ SDLQ+HQR+H G KP++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 179 CEYCDKTFTRQIIMKEHLNRHK 200
C C K+F+R +HL+RH+
Sbjct: 63 CPECGKSFSRS----DHLSRHQ 80
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
+ C C F+ S+LQ+HQR+H G KP++C C K+F++ +++H H G +PY C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 209 HCDKTFFDAQSLNKHKLSHK 228
C K+F + L++H+ +H+
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+K C C F L KH H+ + C C K F+ L+ H R HTGEKP+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 94 RCSVCGKSFSQRGILSSHLAVHAGVK 119
+C CGKSFS+ LS H H K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPI 234
KP++C C K+F++ +++H H G +PY C C K+F + L KH+ +H T P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH-TGEKPY 61
Query: 235 SSAKGSKLF 243
+ K F
Sbjct: 62 KCPECGKSF 70
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 23/62 (37%)
Query: 30 TEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTG 89
T +K C C F L KH H+ + C C K F+ L H R H
Sbjct: 26 THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Query: 90 EK 91
+K
Sbjct: 86 KK 87
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 92 PFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFAC 151
P +C VCGK FS++ L +H+ H GVKP+ CK C +A S L H H + R F C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 152 NVCPFKFTTKSDLQRHQRSHEG 173
+CP+ S L H RSH G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 63 GKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
G C VC K F+ LKTH R HTG KP++C C + + L+ HL +H+ +P
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 123 CKQCGHAFTQKSQLRLHEMRH 143
C+ C +A SQL +H H
Sbjct: 67 CQICPYASRNSSQLTVHLRSH 87
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 120 PHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC 179
PH C+ CG F++K +L+ H H ++ + C C + S L +H R H +PF+C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 180 EYCDKTFTRQIIMKEHLNRHKG 201
+ C + HL H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%)
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHC 210
C VC F+ K L+ H R H GVKP++C+ CD + +HL H +P+ C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 211 DKTFFDAQSLNKHKLSHKTSADPIS 235
++ L H SH + P S
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 176 PFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
P +CE C K F+R+ +K H+ H GV+PY C CD D+ SLNKH
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C +C F + L H+ H+ + + C C + SL H RIH+ E+PF+C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 99 GKSFSQRGILSSHLAVHAG 117
+ L+ HL H G
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 35 KSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGE 90
K C C D LNKH+ HS F C +C N L H R HTG+
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
F C +C K F +L TH IH+ +P+ C CGK F Q+ + H +H G KPH C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 125 QCGHAFTQKSQLRLHEMRH 143
CG AF+Q S L H +H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 93 FRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACN 152
F C +CGKSF + LS+HL +H+ +P+ C+ CG F QKS ++ H H + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 153 VCPFKFTTKSDLQRHQRSHEG 173
VC F+ S+L H R H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 36 SLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
S C IC F L+ H+ HS + C C K F+ +K H+ IHTGEKP +C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 96 SVCGKSFSQRGILSSHLAVHAG 117
VCGK+FSQ L +H H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYC 182
CK CG +F + S L H + H + R + C C +F KSD+++H H G KP +C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 183 DKTFTRQIIMKEHLNRHKG 201
K F++ + H +H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
F C +C F S L H H +P+ C+YC K F ++ MK+H H G +P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 209 HCDKTFFDAQSLNKHKLSH 227
C K F + +L H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 33 QQKSLAC--NICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ +++AC C+ +F D + KH+ H C C K F LK H +HTGE
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPR-VHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 91 KPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICK--QCGHAFTQKSQLRLHEMRHGNI 146
KPF+C+ CGK FS L +H+ +H G +P++C C F Q + L+ H + H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 147 R 147
+
Sbjct: 121 K 121
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 98 CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CP 155
C K F + HL H G + H+C +CG AF + S+L+ H++ H + F C C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 156 FKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRH 199
+F+ +L+ H R H G +P+ C + C+K F + +K H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 120 PHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC 179
PH K C F S +R H HG H C C F S L+RHQ H G KPF+C
Sbjct: 9 PH--KGCTKMFRDNSAMRKHLHTHGPRVH-VCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 180 --EYCDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSHKTSAD 232
E C K F+ ++ H+ H G +PY C C+K F + +L H L+H + +
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 153 VCPFKFTTK-----SDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
CP K TK S +++H +H G + C C K F +K H H G +P+ C
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 208 SH--CDKTF 214
+ C K F
Sbjct: 66 TFEGCGKRF 74
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKP 120
F C C K + + L+ HSR HTGEKP++C C + FS+ L H H GVKP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 121 HICKQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSH 171
CK C F++ L+ H H + F+C C KF +L RH H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 119 KPHICKQ--CGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGV 174
+P +C C + + S L++H +H + + C+ C +F+ L+RHQR H GV
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKH 223
KPF+C+ C + F+R +K H H G +P+SC C K F + L +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 20 KILALCMRKETEAQQKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNI 77
K+ L M +K C+ C F L +H H+ + F C C++ F+
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRS 79
Query: 78 KSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVH 115
LKTH+R HTGEKPF C C K F++ L H +H
Sbjct: 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 52 LNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILS 109
L H +H+ + C C++ F+ LK H R HTG KPF+C C + FS+ L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 110 SHLAVHAGVKPHICKQ--CGHAFTQKSQLRLHEMRHGNI 146
+H H G KP C+ C F + +L +RH N+
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDEL----VRHHNM 118
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ +L TH RIHTG+KPF+C +C ++FSQ+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 123 CKQCGHAF 130
C CG F
Sbjct: 65 CDICGRKF 72
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FSQ+ L +H+ +H G KP C+ C F+Q++ L H H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 148 HFACNVCPFKFTTKSDLQRHQRSH 171
FAC++C KF T RH + H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F + L+ H+ H+ F C +C + F+ SL H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F+ + H +H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ K++L H R H G KPF+C C + F++Q + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + +H H D
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F + LN H+ H+ F C +C + F + + H++IH +K
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F++ +L H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F D L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ S+L RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + +H H D
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 30/112 (26%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FS L+ H+ +H G KP
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP--------------------------- 34
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F C +C F+ L H R+H G KPF C+ C + F R K H H
Sbjct: 35 -FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F L H+ H+ F C +C + F K H++IH +K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ SL H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FSQ G L+ H+ +H G KP C+ C F++ L H H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 148 HFACNVCPFKFTTKSDLQRHQRSH 171
FAC++C KF + +RH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ L RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + +H H D
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F L H+ H+ F C +C + F K H++IH +K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ +L TH RIHTG+KPF+C +C ++FSQ L+ H+ H G KP
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 123 CKQCGHAF 130
C CG F
Sbjct: 65 CDICGRKF 72
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FSQ+ L +H+ +H G KP C+ C F+Q + L H H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 148 HFACNVCPFKFTTKSDLQRHQRSH 171
FAC++C KF T RH + H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F + L+ H+ H+ F C +C + F+ L H R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F+ H +H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ K++L H R H G KPF+C C + F++ + +H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + ++H H D
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F LN+H+ H+ F C +C + F + + H++IH +K
Sbjct: 32 QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 91 KPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQ--CGHAFTQKSQLRLHEMRHGNI 146
K + CS CG ++++ L +HL H G KP CK+ C FT L H + H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVK--PFRC--EYCDKTFTRQIIMKEHLNRHK 200
++F C+ C +FTTK+++++H +K + C E C K F + +K H H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 201 GVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
PY C H CDK F L +H+ H
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRC--SVCGKSFSQRGILSSHLAVHAGVKPHICKQ-- 125
C +N L+ H HTGEKPF C C K F+ L+ H H G K C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 126 CGHAFTQKSQLRLHEMRHGNIRHFACNVCPFK-----FTTKSDLQRHQRSHEGVKPFRC- 179
C FT K+ ++ H R NI+ VC F+ F + L+ HQ SH P+ C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIK-ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 180 -EYCDKTFTRQIIMKEHLNRHKGV---QPYSCSHCDKTF 214
E CDK F+ +K H H G + SCS KT+
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 42 CSMVFCDEIVLNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSV-- 97
C + L H+ +H+ F C C+K F ++ L HS HTGEK F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 98 CGKSFSQRGILSSHLAVHAGVK--PHIC--KQCGHAFTQKSQLRLHEMRHGNIRHFAC-- 151
C F+ + + H +K ++C + CG AF + +QL++H+ H + C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 152 NVCPFKFTTKSDLQRHQRSHEGV---KPFRCEYCDKTFT 187
C +F+ S L+RH++ H G K C + KT+T
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ +L RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + +H H D
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FS+ L+ H+ +H G KP
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP--------------------------- 34
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F C +C F+ L H R+H G KPF C+ C + F R K H H
Sbjct: 35 -FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F L H+ H+ F C +C + F K H++IH +K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ +DL RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + +H H D
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FS+ L+ H+ +H G KP
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKP--------------------------- 34
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F C +C F+ L H R+H G KPF C+ C + F R K H H
Sbjct: 35 -FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F L H+ H+ F C +C + F K H++IH +K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ ++L RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
++C C + F + +H H D
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FS+ L+ H+ +H G KP
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKP--------------------------- 34
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F C +C F+ L H R+H G KPF C+ C + F R K H H
Sbjct: 35 -FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
QK C IC F L H+ H+ F C +C + F K H++IH +K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 64 CDICGRKFARSDERKRH 80
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ +L RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 205 YSCSHCDKTFFDAQSLNKHKLSH 227
++C C + F + +H H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FS+ L+ H+ +H G KP
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP--------------------------- 33
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F C +C F+ L H R+H G KPF C+ C + F R K H H
Sbjct: 34 -FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLH 139
C CG F + + + H
Sbjct: 65 CDICGRKFARSDERKRH 81
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 34 QKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
++ AC + C F L +H+ H+ F C +C + F+ L TH R HTGEK
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PFRCSVCGKSFSQRGILSSHLAVH 115
PF C +CG+ F++ H +H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
R +AC V C +F+ +L RH R H G KPF+C C + F+R + H+ H G +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 205 YSCSHCDKTFFDAQSLNKHKLSH 227
++C C + F + +H H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 30/112 (26%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FS+ L+ H+ +H G KP
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP--------------------------- 34
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F C +C F+ L H R+H G KPF C+ C + F R K H H
Sbjct: 35 -FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 66 TCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGV--KPHIC 123
C +C K+F ++ L H H+GEKP+ C VCG F ++ +S H+ H G KP+IC
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 124 KQCGHAFTQKSQLRLH 139
+ CG F++ L H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 36 SLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGE--KPF 93
+AC IC +F D LN+H HS ++C VC F + H R H G KP+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 94 RCSVCGKSFSQRGILSSHL-AVHAG 117
C CGK FS+ L+ H+ VH+G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 150 ACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGV--QPYSC 207
AC +C F L RH+ SH G KP+ C C F R+ M H+ H G +PY C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 208 SHCDKTFFDAQSLNKH 223
C K F LN H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGV--KPFRCE 180
C+ CG F L H++ H + ++C VC +F K + H RSH+G KP+ C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 181 YCDKTFTRQIIMKEHLNRH 199
C K F+R +HLN H
Sbjct: 70 SCGKGFSRP----DHLNGH 84
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 179 CEYCDKTFTRQIIMKEHLNRHK----GVQPYSCSHCDKTFFDAQSLNKHKLSHKTSA 231
CE C K F R + HLNRHK G +PYSC C F ++ H SH S
Sbjct: 10 CEICGKIF-RDVY---HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 21 ILALCMRKETEAQQKSLACNICSMVFCDEIVLNKHVEEH-STLGK-FTCTVCKKVFNNIK 78
+ L K + + +K +C +C + F + ++ HV H ++GK + C C K F+
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 79 SLKTH-SRIHTG 89
L H ++H+G
Sbjct: 80 HLNGHIKQVHSG 91
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 201 GVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +C C K F D LN+HKLSH
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSH 30
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 61 TLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
T +F C C + F +L H R HT E+P+ C +C K+F ++ L H +H+ KP
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 121 HICKQCGHAFTQKSQLRLHEMRH 143
C++CG F Q L +H+ H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
+ F C C FT +L H+R+H +P+ C+ C K F RQ +++H H +P+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 207 CSHCDKTFFDAQSLNKHKLSHKTSADPISSA 237
C C K F +++L HK H ++ P +++
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+K C C F L H H+ +TC +C K F L+ H IH+ EKPF
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 94 RCSVCGKSFSQRGILSSHLAVH 115
+C CGK F Q L+ H +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFR 178
K ICK CG FT+ L +HE H + R + C++C F + L+ H+ H KPF+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 179 CEYCDKTFTRQIIMKEHLNRH 199
C+ C K F + + H H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHF 149
+K F C CG+ F++ L H H +P+ C C AF ++ LR H H + F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 150 ACNVCPFKFTTKSDLQRHQRSH 171
C C F L H+ H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
+G C C K F + L H H G KP C +CG + +K L HE R+ R
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 148 H---FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHL 196
F C+VC F + +L+ H SH G P++C C + F ++ ++ H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 37 LACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSR---IHTGEKPF 93
+ C C F + L H +H+ F C C K + ++L H ++ E+ F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 94 RCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMR 142
CSVC ++F +R L H+ H G P+ C C F QK L+ H ++
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH---KGVQPYSC 207
C C KF +K L+ H R H G KPF C C K + R+ + EH R+ + Q ++C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 208 SHCDKTFFDAQSLNKHKLSHKTSADPISSAKGSKLF 243
S C +TF L H +SH T P + S+ F
Sbjct: 70 SVCQETFRRRMELRLHMVSH-TGEMPYKCSSCSQQF 104
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHL-AVHAG 117
FTC+VC++ F L+ H HTGE P++CS C + F Q+ L SH+ +H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHK 224
G C C K F + +K H +H G +P+ C C K +F ++L +H+
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCG 127
C KV+ LK H R HTGEKP++C+ C F++ L+ H H G KP C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 128 HAFTQKSQLRLHEMRHGN 145
+F++ L LH RH N
Sbjct: 83 RSFSRSDHLALHMKRHQN 100
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 30/116 (25%)
Query: 85 RIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHG 144
RIH + P C K +++ L +HL H G KP+ C G
Sbjct: 14 RIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG----------------- 52
Query: 145 NIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK 200
C ++F +L RH R H G KPF+C C+++F+R + H+ RH+
Sbjct: 53 ---------CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPYSCSHCD 211
C +T S L+ H R+H G KP++C + CD F R + H +H G +P+ C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 212 KTFFDAQSLNKHKLSHK 228
++F + L H H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 42 CSMVFCDEIVLNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
C+ V+ L H+ H+ + CT C F L H R HTG KPF+C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 100 KSFSQRGILSSHLAVH 115
+SFS+ S HLA+H
Sbjct: 83 RSFSR----SDHLALH 94
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 26/73 (35%)
Query: 15 VENASKILALCMRKETEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVF 74
V S L +R T + C F L +H +H+ F C VC + F
Sbjct: 26 VYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Query: 75 NNIKSLKTHSRIH 87
+ L H + H
Sbjct: 86 SRSDHLALHMKRH 98
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCG 127
C K + LK H R HTGEKP+ C CG F++ L+ H H G +P C++C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 128 HAFTQKSQLRLHEMRH 143
AF++ L LH RH
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 26/102 (25%)
Query: 98 CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFK 157
CGK++++ L +HL H G KP+ C G C +K
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG--------------------------CGWK 46
Query: 158 FTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F +L RH R H G +PF+C+ CD+ F+R + H+ RH
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPYSCSHCD 211
C +T S L+ H R+H G KP+ C++ C F R + H +H G +P+ C CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 212 KTFFDAQSLNKHKLSH 227
+ F + L H H
Sbjct: 73 RAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCG 127
C K + LK H R HTGEKP+ C CG F++ L+ H H G +P C++C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 128 HAFTQKSQLRLHEMRH 143
AF++ L LH RH
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 26/102 (25%)
Query: 98 CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFK 157
CGK++++ L +HL H G KP+ C G C +K
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG--------------------------CGWK 47
Query: 158 FTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
F +L RH R H G +PF+C+ CD+ F+R + H+ RH
Sbjct: 48 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPYSCSHCD 211
C +T S L+ H R+H G KP+ C++ C F R + H +H G +P+ C CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 212 KTFFDAQSLNKHKLSH 227
+ F + L H H
Sbjct: 74 RAFSRSDHLALHMKRH 89
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
++ C C K F++ L H R HTGEKP++C CGK+F QR L H VH G P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%)
Query: 93 FRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
++C CGKSFS LS H H G KP+ C +CG AF Q+S L H H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 140 EMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
E + R + C+ C F+ SDL +H+R+H G KP++C+ C K F ++ + H H
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 200 KGVQPYS 206
G P S
Sbjct: 70 TGSGPSS 76
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 177 FRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPIS 235
++C+ C K+F+ + +H H G +PY C C K F L H H T + P S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH-TGSGPSS 76
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 31 EAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ +++ C+ C F L+KH H+ + C C K F L H R+HTG
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Query: 91 KP 92
P
Sbjct: 73 GP 74
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
C +CG +F+ S L H H + + C+ C F +S L H R H G P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
+G+K + C CGKSF+ + H+++H G++P+ C CG F K L H H I+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 148 HFACNVCPFKFTTKSDLQRH----QRSHEGVK 175
+ CN+C +F + RH +S+E K
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSCTKSYEAAK 96
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
+G K + C QCG +FT KSQ H H +R + C VC KF K L H + H G+K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 176 PFRCEYCDKTFTRQIIMKEHLNRH 199
P+ C C K F + ++ +RH
Sbjct: 65 PYECNICAKRF----MWRDSFHRH 84
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKT 213
C FT KS RH H G++P+ C C K F + + H+ H G++PY C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 214 FFDAQSLNKHKLS 226
F S ++H S
Sbjct: 75 FMWRDSFHRHVTS 87
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHA 129
C K F + H +H G +P+ C VCGK F + L H+ +H G+KP+ C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 130 FTQKSQLRLH 139
F + H
Sbjct: 75 FMWRDSFHRH 84
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 42 CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKS 101
C F + ++H+ H L + C VC K F L H +IHTG KP+ C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 102 FSQRGILSSHL 112
F R H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTF 214
G K + C+ C K+FT + H++ H G++PY C C K F
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 47
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+ C C+ F +L +H +HTGEKP+RC++CG F++ L +H +H+G KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+KP++C C SF +G L+SH VH G KP+ C CG F + + L+ H H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 35 KSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
K C+ C F + L H H+ + C +C FN +LKTH+RIH+GEKP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
+ C+ C F K +L H+ H G KP+RC C F R +K H H G +P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
KP+ C +C +F K L H+ H + + CN+C +F ++L+ H R H G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
KP++C+ C +F + + H H G +PY C+ C F +L H H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
EKP+ C CGK+FS+ IL H VH G KP+ C +CG AF+Q S L H+ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+ C C K F+ L H R+HTGEKP++C CGK+FSQ L +H +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTSAD 232
KP+ C C K F+R I+ +H H G +PY C C K F L H+ H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
KP+ C +CG AF++ S L H+ H + + C C F+ S L HQR H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
+ C C F+ S L +HQR H G KP++C C K F++ + H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHT 88
+K C C F +L +H H+ + C C K F+ L H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 46 FCDEIVLNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRC--SVCGKS 101
F + +L H+ H+ CT C+K ++ +++LKTH R HTGEKP+ C C K+
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 102 FSQRGILSSHL-AVHAGVKPHICK--QCGHAFTQKSQLRLH 139
FS + H H+ KP++CK C +T S LR H
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 126 CGHAFTQKSQLRLH---EMRHGNIRHFACN-------VCPFKFTTKSDLQRHQRSHEGVK 175
C F + QL H E HG + F C+ + PFK + L H R H G K
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFK--AQYMLVVHMRRHTGEK 66
Query: 176 PFRC--EYCDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSHKTSA 231
P +C E C K+++R +K HL H G +PY C H C K F +A KH+ ++
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 232 DPI 234
P
Sbjct: 127 KPY 129
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 39/167 (23%)
Query: 70 CKKVFNNIKSLKTH---SRIHTGEKPFRCSVCG-----KSFSQRGILSSHLAVHAGVKPH 121
C + F++ + L H IH K F C G + F + +L H+ H G KPH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 122 ICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEY 181
C G C ++ +L+ H RSH G KP+ CE+
Sbjct: 69 KCTFEG--------------------------CRKSYSRLENLKTHLRSHTGEKPYMCEH 102
Query: 182 --CDKTFTRQIIMKEHLNR-HKGVQPYSC--SHCDKTFFDAQSLNKH 223
C K F+ +H NR H +PY C C K + D SL KH
Sbjct: 103 EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C +C + L +H HS K+ C C+KVF + H HTGE+ ++C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 99 GKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQL-RLHEMRHGNIRHFA 150
GKSF +SSH+ P + S+L RLH R IR +A
Sbjct: 85 GKSFINYQFMSSHIKSVHSQDP----------SGDSKLYRLHPCRSLQIRQYA 127
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
++ C VC + + L+RH H K + C YC+K F +H H G + Y C
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 208 SHCDKTFFDAQSLNKHKLSHKTSADPISSAKGSKL 242
C K+F + Q ++ H + S DP +K +L
Sbjct: 82 LACGKSFINYQFMSSH-IKSVHSQDPSGDSKLYRL 115
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ C VCK+ + + SL+ H IH+ EK + C C K F + H H G + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 125 QCGHAF 130
CG +F
Sbjct: 83 ACGKSF 88
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 34/91 (37%)
Query: 86 IHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGN 145
I G + C VC +S+ L H +H+ K + C+ C F HE+ H
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
R + C C F + H +S P
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 117 GVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
G +IC C ++ + LR H H + + C C F +H+ H G +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 177 FRCEYCDKTFTRQIIMKEHL 196
++C C K+F M H+
Sbjct: 79 YQCLACGKSFINYQFMSSHI 98
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 32 AQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTH 83
+ +K C C VF KH H+ ++ C C K F N + + +H
Sbjct: 46 SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLA-VHAG 117
F C VC + F + LK H R HT EKP+ C +C ++F++R +L H +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEH 195
F C VC F + L+RH RSH KP+ C C++ FTR+ ++ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 177 FRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
F CE C + F RQ +K H H +PY C C++ F L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 93 FRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLH 139
F C VC ++F+++ L H H KP+ C C AFT++ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 122 ICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRH-QRSHEG 173
+C+ C AF ++ L+ H H N + + C +C FT + L RH Q+ H G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 36 SLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHS-RIHTG 89
S C +C+ F + L +H H+ + C +C + F L H+ +IH+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 91 KPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQ--CGHAFTQKSQLRLHEMRHGNI 146
K + CS CG ++++ L +HL+ H G KP CK+ C FT L H + H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVK 175
++F C+ C +FTTK+++++H +K
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 42 CSMVFCDEIVLNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSV-- 97
C + L H+ +H+ F C C+K F ++ L HS HTGEK F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 98 CGKSFSQRGILSSHLAVHAGVK 119
C F+ + + H +K
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRC--EYCDKTFTRQIIMKEHLNRHKGVQPYSCSH-- 209
C + LQ H H G KPF C E C+K FT + H H G + ++C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 210 CDKTFFDAQSLNKH 223
CD F ++ KH
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 182 CDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
C + + ++ HL++H G +P+ C C+K F L +H L+H + + G
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 240 SKL 242
L
Sbjct: 71 CDL 73
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 62 LGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQ 104
+ F C +C + F+ L TH R HTGEKPF C +CG+ F++
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHF 149
KPF+C +C ++FS+ L++H+ H G KP C CG F + + + RH +I+H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK----RHRDIQHI 56
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQ 203
F C +C F+ L H R+H G KPF C+ C + F R + RH+ +Q
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS----DERKRHRDIQ 54
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 174 VKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHK 224
+KPF+C C + F+R + H+ H G +P++C C + F + +H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 35 KSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRI 86
K C IC F L H+ H+ F C +C + F K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 62 LGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHA 116
+ + C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 IRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
+R +AC V C +F+ +L RH R H G KPF+C C + F+R + H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 91 KPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLH 139
+P+ C V C + FS+ L+ H+ +H G KP C+ C F++ L H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 174 VKPFRC--EYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
++P+ C E CD+ F+R + H+ H G +P+ C C + F + L H +H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 32 AQQKSLACNI--CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHT 88
+ + AC + C F L +H+ H+ F C +C + F+ L TH R HT
Sbjct: 15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 41/143 (28%)
Query: 70 CKKVFNNIKSLKTHSRI-HTGEKPFRCSVC--------GKSFSQRGILSSHLAVHAGVKP 120
C + F+ + L TH + H G VC GKSF + L +H+ VH G KP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 121 HIC--KQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFR 178
C CG F + L++ H+R+H G KPF+
Sbjct: 91 FPCPFPGCGKIFARSENLKI----------------------------HKRTHTGEKPFK 122
Query: 179 CEY--CDKTFTRQIIMKEHLNRH 199
CE+ CD+ F K+H++ H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 52 LNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGI 107
L H+ H+ F C C K+F ++LK H R HTGEKPF+C C + F+
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 108 LSSHLAVHAGVK 119
H+ VH K
Sbjct: 138 RKKHMHVHTSDK 149
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 158 FTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKT 213
F K L H R H G KPF C + C K F R +K H H G +P+ C CD+
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 214 FFDAQSLNKHKLSHKTSADPISSA 237
F ++ KH H + SS
Sbjct: 132 FANSSDRKKHMHVHTSDKSGPSSG 155
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHIC- 123
C K F L H R+HTGEKPF C CGK F++ L H H G KP C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 124 -KQCGHAFTQKSQLRLH 139
+ C F S + H
Sbjct: 125 FEGCDRRFANSSDRKKH 141
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 89 GEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
G CS CGK F L+ HL H G KP+ C+ C +A QK+ LR H RH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
C+ C K F + L H R HTGEKP++C C + +Q+ L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
C+ C F + L H R+H G KP++CE+C+ ++ ++ HL RH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
G C YC K F + HL H G +PY C C+ SL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 117 GVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
G C CG F L +H H + + C C + K+ L+ H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGN 145
E+PF C+ CGK++ LS H H G +P C +CG F +S++ H H N
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
F C C K + + L H R H G +P C CGK F + ++ HL VH
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKT 229
+PF C +C KT+ + H H G +P SC C K F D +N+H H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK 200
R F CN C + S L RH+R+H G +P C C K F Q + HL H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIH 87
++ CN C + D L++H H +C C K F + + H ++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
T EKPFRC C KSF QR L+SH +H G KP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KPFRC+ CDK+F ++ + H H G +P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F +L +H IHTGEKP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
+P+ C CDK+F +LN H++ H T P + G
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIH-TGEKPSGPSSG 46
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+GEKP++C CGKSFSQRG L+ H +H G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP+ CK+CG +F+Q+ L +HE H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ SL H R+HTG P
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
G KP++C+ C K+F+++ + H H G P S
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C+ CGK+FSQ+ ILS+H H G KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + CN C F+ KS L HQR+H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ C C KTF+++ I+ H H G +P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ L H R HTGEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG F+QKS L H+ H
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTH 35
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
+PY C+ C KTF L+ H+ +H T P + G
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTH-TGEKPSGPSSG 46
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVK----PHICKQCGHAFTQKS 134
S + R HTGEKP+ CS C K+F Q+ +L H + +C +CG FT+++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 135 QLRLH 139
+ H
Sbjct: 62 TMARH 66
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 169 RSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQ----PYSCSHCDKTFFDAQSLNKH 223
R+H G KP+ C +CDKTF ++ ++ H R+ + CS C KTF ++ +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 106 GILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRH----FACNVCPFKFTTK 161
G S H G KP+ C C F QK L +H R+ + F C+ C FT +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 162 SDLQRH 167
+ + RH
Sbjct: 61 NTMARH 66
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 59 HSTLGKFTCTVCKKVFNNIKSLKTH-SRIHTGE---KPFRCSVCGKSFSQRGILSSHLAV 114
H+ + C+ C K F + L H R H F CS CGK+F++R ++ H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 115 HAG 117
AG
Sbjct: 70 CAG 72
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ CSVCGK+FS R LS H +H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+VC K F++ +SL H RIH+G+KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C+VC F+ + L HQR H G KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+RC CGK+FSQ+G L H+ VH G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
KP+RC+ C K F+++ + H+ H G P S
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C QCG AF+QK L +H H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ SL H R+HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+RC CGK+F+Q+ L+ H +H G KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F +L H RIHTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KP+RC C K F ++ + +H H G +P S
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF QK+ L H+ H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C C F K++L +HQR H G KP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C+ CGK+FS R L++H A+H G KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ SL TH IHTG+KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C QCG AF+ +S L H+ H
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + CN C F+ +S L HQ H G KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CGKS++QR L+ H VH G KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K +N L H R+HTGEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KPF+C C K++ +++ + +H H G +P S
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 121 HICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRS 170
+IC++CG + S L+ H H ++R + C C F F TK +L +H +S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHA 116
K+ C C LK H R HT +P+ C+ C SF +G L+ H+ A
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHL 196
+ C C + S L++H R+H V+P+ C YC+ +F + + +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 177 FRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
+ CE C + ++K+H+ H V+PY C++C+ +F +L KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 93 FRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLH 139
+ C CG + +L H+ H V+P+ C C +F K L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CGK+F Q L+SHL +H G KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F L +H RIHTGEKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KPF+C+ C K F + I + HL H G +P S
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK F+Q L++H +H GVKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C FT S L HQR H GVKP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H RIHTG KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP++C C K FT+ + H H GV+P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
KP+ C +CG FTQ S L H+ H ++
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+RC+ CGK+F+ R L +H +H G KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F + +L TH +IHTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AFT +S L H+ H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+RC C K FT + + H H G +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ CS+CGKSF+++ L H +H G KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C++C K F L H +IHTGEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C CG +FT+KSQL +H+ H
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + C++C FT KS L HQ+ H G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ C C K+FT++ + H H G +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CGK F+Q L SH VH G KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F L +H R+HTGEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KPF+CE C K FT+ + H H G +P S
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
F C C +FT S L HQR H G KP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP C++CG FTQ SQL H+ H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK+FSQ L+ H +H G KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ L H RIHTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C F+ S L RHQR H G KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF+Q S+L H+ H
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIH 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK F+Q L++H +H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H RIHTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP++C C K FT+ + H H G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG FTQ S L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C FT S L H R H G KP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVH 115
C K + LK H+R HTGEKPF CS C + F++ LS H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 182 CDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
C KT+ + +K H H G +P+SCS C++ F + L++H+ +H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 118 VKPHICKQ--CGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSH 171
++ HIC CG + + S L+ H H + F+C+ C +F +L RH+R+H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRH 199
H C FK S L+ H R+H G KPF C + C++ F R + H H
Sbjct: 22 HPGCGKTYFK---SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 98 CGKSFSQRGILSSHLAVHAGVKPHIC--KQCGHAFTQKSQLRLHEMRH 143
CGK++ + L +H H G KP C K C F + +L H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CGK F+Q L SH VH G KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F L +H R+HTGEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KPF+CE C K FT+ + H H G +P S
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
F C C +FT S L HQR H G KP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK+F R L+ H A H+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF +S L +H+ H
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATH 35
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F SL H H+GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + CN C F +S L HQ +H G KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+GEKP+ C+ CGK+F+ + L H VH GVKP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
+G KP+ C +CG AFT KSQL +H+ H ++
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ ++CN C FT KS L H+ H GVKP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
G KP+ C C K FT + + H H GV+P
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF C+ CGKSFS L++H +H G KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F+ L TH RIHTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ F C C F+ S L HQR H G KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CGK FS+R L+ H +H G KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F+ +L H ++HTGEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KPF+C C K F+R+ + H H G +P S
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 169 RSHEGVKPFRCEYCDKTFTRQIIMKEH-LNRH-KGVQPYSCSHCDKTFFDAQSLNKHKLS 226
R+H G KP+ C C FT+ MK H L +H + V + C HCD L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 227 HKTSADPIS 235
+ + P S
Sbjct: 68 QHSYSGPSS 76
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 85 RIHTGEKPFRCSVCGKSFSQRGILSSH-LAVHA-GVKPHICKQCGHAFTQKSQLRLH 139
R H+GEKP+ C +C F+Q G + H L H V C C +KS L +H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 143 HGNIRHFACNVCPFKFTTKSDLQRH--QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNR 198
H + + C +C +FT ++ H Q+ E V F C +CD R+ + HL +
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C +CGKSF R L+ H VH KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C +C K F L HS +HT EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C VC K+F+Q+ L+ H H G KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C VC K F L H + HTGEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + C VC FT K+ L +HQ++H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ C+ C K FT++ + +H H G +P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ CK C AFTQK+ L H+ H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C CKK F SL H RIHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
F CN C FT S L HQR H G KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+K F+C+ C K+F+Q L+ H +H G KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK F+Q L+ H +H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H IHTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGV 202
KP++C C K FT+ HL RH+G+
Sbjct: 11 KPYKCNECGKVFTQN----SHLARHRGI 34
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG FTQ S L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C FT S L RH+ H G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E+P+ C+VCGK+F+ R L H +H G KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ CTVC K F + +L H +IHTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
R + C VC FT +S+L +HQ+ H G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
+P+IC CG AFT +S L H+ H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ CS CGK+FS + L H+ H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F++ L H R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF+ KS L +H H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + C+ C F++KS L H R+H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ C C K F+ + + H+ H G +P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
KP++C+ CGK+FSQ L+ H VH G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ L H R+HTGEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C F+ S L RHQR H G KP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF+Q S+L H+ H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK F+Q L+ H VH G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H R+HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C FT S L RH+R H G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG FTQ S L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVH 35
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP++C C K FT+ + H H G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C VC+K F++ SL H R+H+GEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C VC K+FS L+ H VH+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C+VC F+ + L +HQR H G KP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ C+ C K F+ + +H H G +P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C VC K F+ L+TH R+HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EK ++C VCGK FSQ L +H VH G KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C+VC +F+ S LQ HQR H G KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
T E PF+C+ CGK+FS LS H +HAG P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 176 PFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
PF+C C KTF+ + +H H G P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F++ L H IH GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C CGK+FSQ L H VH G KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ L H R+HTGEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ CK+CG AF+Q + L H+ H
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK F+Q L H +H G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H IHTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGV 202
KP++C C K FT+ HL RH+G+
Sbjct: 11 KPYKCNECGKVFTQN----SHLVRHRGI 34
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG FTQ S L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIH 35
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK+F L++H +H G KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F +L TH IHTGEKP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C+ CGKSF Q+ L+ H +H G KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+IC +CG +F QKS L H H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F L H RIHTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C F KS L RH+R H G KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
+PY C+ C K+F LN+H+ H T P + G
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH-TGEKPSGPSSG 46
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGV 202
KP+ C C K+F I K HLNRH+ +
Sbjct: 11 KPYICNECGKSF----IQKSHLNRHRRI 34
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP++C +CG AF KSQL +HE H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+G+KP+ C+ CGK+F + L H +H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ C C K F L H RIHTGE
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C+ CGK F LS H +H G KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF + L H RIHTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C F S L RHQR H G KP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++CS CGK+F + L+ H +H G +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP++C C K F R + EH H G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F+ L H RIHTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
+PY CS C K F LN+H+ H T P + G
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIH-TGYRPSGPSSG 46
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRHGNI 146
+G KP++C CG AFT KSQL +H+ H +
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGV 118
+GEKP+ CS CGK+F+ + L H +H GV
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+G+KP C+ CGK+F Q LS H +H+G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
C C K F L H RIH+GEKP
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
G KP C C KTF + + +H H G +P
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C F S L +HQR H G KP
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP +C +CG F Q S L H+ H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIH 33
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNR 198
C VC F +K +RH R + F C+YC TF + H+N+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 112 LAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRH 167
L + A + H+C CG +F K H + F C CP F + L RH
Sbjct: 20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 179 CEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
C C ++F + + HL Q + C +C TF+ + L +H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 95 CSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLH 139
C VCG+SF+ +G HL + + CK C F L H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+KP++C+ CGK F+Q L+ H +H G KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H IHTGEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGV 202
KP++C C K FT+ HL RH+G+
Sbjct: 11 KPYKCNECGKVFTQN----SHLARHRGI 34
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG FTQ S L H H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ CN C FT S L RH+ H G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C+ C+K FN +L H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF CS C K+F+ + L H H G KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ F C+ C F TKS+L HQR+H G KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 124 KQCGHAFTQKSQLRLHEMRHGNIRHFAC--NVCPFKFTTKSDLQRHQRSHEGV---KPFR 178
+ CG AF + +QL++H+ H + C C +F+ S L+RH++ H G K
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 179 CEYCDKTFT 187
C + KT+T
Sbjct: 67 CSFVGKTWT 75
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRC--SVCGKSFSQRGILSSHLAVHAGV 118
C K F LK H HT + P+ C C K FS L H VHAG
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 180 EYCDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
E C K F + +K H H PY C H CDK F L +H+ H
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 158 FTTKSDLQRHQRSHEGVKPFRC--EYCDKTFTRQIIMKEHLNRHKGV---QPYSCSHCDK 212
F + L+ HQ SH P+ C E CDK F+ +K H H G + SCS K
Sbjct: 13 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 72
Query: 213 TF 214
T+
Sbjct: 73 TW 74
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 124 KQCGHAFTQKSQLRLHEMRHGNIRHFAC--NVCPFKFTTKSDLQRHQRSHEGV---KPFR 178
+ CG AF + +QL++H+ H + C C +F+ S L+RH++ H G K
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 179 CEYCDKTFT 187
C + KT+T
Sbjct: 67 CSFVGKTWT 75
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRC--SVCGKSFSQRGILSSHLAVHAGV 118
C K F LK H HT + P+ C C K FS L H VHAG
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 180 EYCDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
E C K F + +K H H PY C H CDK F L +H+ H
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRC--EYCDKTFTRQIIMKEHLNRHKGV---QPYSCS 208
C F + L+ HQ SH P+ C E CDK F+ +K H H G + SCS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 209 HCDKTF 214
KT+
Sbjct: 69 FVGKTW 74
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C VC K F SL H RIHTGEKP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C VC KSF L+ H +H G KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C+VC F S L HQR H G KP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E P+ C CGK+FS++ L SH HAG KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ L +H R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 176 PFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
P+ C C K F+R+ + H H G +P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C+ C F+ K L HQR+H G KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+GE P+ CS CGK+F+++ L SH HAG
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G P+ C +CG AF +K QL H+ H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ C+ C K FN L +H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 201 GVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPIS 235
G PY CS C K F L H+ +H + P S
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
T EKP++C CGK+F R L++H +H G K
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ C C K F +L TH IHTGEK
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF +S L H++ H
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP++C++CG AFTQ S L +H H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+GEKP+ C CGK+F+Q LS H VH G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ C C K F L H R+HTGE
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 201 GVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPIS 235
G +PY C C K F + L+ H+ H + P S
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSS 41
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F CT C K F +L H +IHTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 93 FRCSVCGKSFSQRGILSSHLAVHAGVKP 120
F C+ CGK+F+++ LS H +H G KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+HF C C FT KS L HQ+ H G KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 123 CKQCGHAFTQKSQLRLHEMRH 143
C +CG AFT+KS L +H+ H
Sbjct: 15 CTECGKAFTRKSTLSMHQKIH 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C VCGK+F L H +VH+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C VC K F L H +H+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 70 CKKVFNNIKSLKTHSRI-HTGEKPFRCS--VCGKSFSQRGILSSHLAVHAGVKPHICKQC 126
C ++F+N + L H + H +K F C CGKSF+ + L H+ +H+ + +IC+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 127 G 127
G
Sbjct: 75 G 75
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 42 CSMVFCDEIVLNKHVE-EHSTLGKFTCT--VCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C +F + LN H + +H F+C C K FN K LK H ++H+ + + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 99 GKS 101
G S
Sbjct: 75 GPS 77
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
++ + C+ C F+ KS L HQRSH GVKP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
VKP+ C QC F+ KSQL +H+ H ++
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
KP+ CS C K+FS + L H H GVKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 174 VKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
VKP+ C C KTF+ + + H H GV+P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 202 VQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
V+PY CS C KTF L H+ SH T P + G
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSH-TGVKPSGPSSG 46
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F+ L H R HTG KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
+KPF C+ CGKSF +G L +H +H G K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
F CT C K F +L TH RIHTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHA 116
E+PF+C+ CGK F +R L+ HL +H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EK ++C+ CGK FS+ LS H +H G KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
++ C C KVF+ L H +IHTGEKP
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + CN C F+ S L +HQ+ H G KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
KP+ C+ CGK+FS L++H +H G KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ SL TH IHTGEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRH 143
VKP++C +CG AF+ S L H++ H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
++ + CN C F+ S L HQ H G KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 202 VQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
V+PY C+ C K F SL H++ H T P + G
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIH-TGEKPSGPSSG 46
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+G++ + C CGKSF Q+G L+ H +H G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F SL H RIHTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G + + C++CG +F QK L LHE H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRH 148
KP+ C CG +FT KS+LR+H+ H RH
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
EKP++CS CGKSF+ + L H H G +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C CGK F R L +H VH G KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F + L TH +HTGEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ CS CGKSF ++ L H +H G P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F L H RIHTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C CG +F +KSQL +H+ H
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIH 35
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C CGKSF L H VH+G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F L H R+H+GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E+ + CS CGK+F Q+ LS H +H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
RH+ C+ C F KS L HQR H G KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F +L H RIH GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C +CG F L SHL +H G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C +C F ++++LK+H RIHTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
KP+ CE C F +K HL H G P S
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
+GEKP+ C+ CGK FS + L H +H G K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP+ C +CG F+ KS L +H+ H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ C C K F++ L H RIHTGEK
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
+ + CN C F++KS L HQR H G K
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F++ L H RIHTGEKP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF C CGK+FS L+ H +H G KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
KPF C C K F+ I + +H H G +P S
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRH 148
KP+ C CG AFT+KS L +H+ H RH
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
EKP++CS CGK+F+++ L H H G +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKG 201
KP++C C K FTR+ + H H G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 149 FACNV--CPFKFTTKSDLQRHQRSHEGVKP 176
FAC C ++F+ +L RH+RSH GVKP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKP 120
EKPF C+ CG FS+ LS H H+GVKP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 175 KPFRCEY--CDKTFTRQIIMKEHLNRHKGVQP 204
KPF C + C F+R + H H GV+P
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+GEKPF CS C K+FS + L H HA KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C+ C+K F++ L H + H EKP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F + L+ H RIHTGEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C CGK+F L H +H G KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ CE C K F ++EH H G +P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C++CG AF SQL+ H+ H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ C C F S LQ HQR H G KP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+G KP+ CS CGK+F + L H+ H G KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+GVKP+ C +CG AF KS L +H H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F + L H R HTGEKP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
GVKP+ C C K F + + H+ H G +P
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 145 NIRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
++ + C+ C F +KS L H R+H G KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 201 GVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
GV+PY CS C K F L H +H T P + G
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTH-TGEKPSGPSSG 44
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C K F +L H RIHTGEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E+ + CS CGK+F+++ L H +H G KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
RH+ C+ C F KS L HQR H G KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C CG F Q L +H+ +H G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
KP++CE C F + ++ H+ H G P S
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C+ CG F Q + LR H + H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E+P +C+ CGKSF Q L H +H G KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKP 92
C C K F L H RIHTGEKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C CGK ++ + L H VH G +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K +N+ +L H ++HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C CGK F + L+ H +H G KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C KVF L H IHTGEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F L H RIHTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C CGK+F L H +H G KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + C+ C F ++L RHQR H G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KP+ C+YC K F + H H G +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGV 118
EKP+ C+ CGK+F + +L H HAGV
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 31.2 bits (69), Expect = 0.59, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNI 146
KP+ C +CG AF KS L +HE H +
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
EKP++C CGK +++R L H VH G K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ C C K +N +L H R+H GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKG 201
KP++CE C K + R++ + H H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C+ C KVF + +L H +IHTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E PF CS CGK F+ + L H +H G +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 120 PHICKQCGHAFTQKSQLRLHEMRHGNIR 147
P IC +CG FT K+ L +H+ H R
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAG 117
+P+ CSVCGK FS + + +H VH G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTG 89
++C+VC K F+ ++TH R+HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEG 173
+R ++C+VC +F+ K ++ H R H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVH 115
EKP+ C+VCGK+F L+ HL VH
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 169 RSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
R G+KPF+C CD++F+R + H RH
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+R TG KPF+C C +SFS+ S HLA+H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSR----SDHLALH 30
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
G+KP C C +F++ L LH RH
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
F C C++ F+ LKTH+R HTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
KPF+C C + FS+ L +H H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKG 201
KPF+C+ C + F+R +K H H G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CGK F SH H+G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ F C C F T S HQRSH G KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
F C C K F +H R H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
KPF+CE C K F H H G +P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
FTC C KVF SL+ H RIHT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 133 KSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEG 173
K+ LR+HE H R F CN C F S+L +H + G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHL 112
+L+ H RIH ++PF+C+ C Q LS H+
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
KP++CS CGKSFS L+ H H KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
+PY CS C K+F + L +H ++H T P + G
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH-TREKPSGPSSG 46
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP++C +CG AF +KS HE H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+GEKP+ C+ CGK+F ++ +H +H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ CT C K F TH RIHTGE
Sbjct: 11 YVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EPP|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 278
Length = 66
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRHG 144
AG+ P C CG FT ++LR HE +HG
Sbjct: 11 AGILP--CGLCGKVFTDANRLRQHEAQHG 37
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 92 PFRCSVCGKSFSQRGILSSHLAVHAGVK 119
P +C CGK F+ G L HL +H+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 63 GKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
G C C K F +LK H RIH+GEK
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G KP+ C CG AF KSQL +H+ H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+GEKP+ C+ CGK+F + L H H G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ CT C K F L H R HTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+ C +C K+F ++ L H H+GEKP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 206 SCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKGS 240
+C C K F D LN+HKLSH + P SS S
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSH-SGEKPYSSGPSS 47
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHS 60
+K +AC IC +F D LN+H HS
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHS 36
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKPF 177
+ AC +C F L RH+ SH G KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 90 EKPFRCSVCGKSFSQRGILSSH 111
E P+ C CGKSF+QRG L+ H
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVH 30
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 120 PHICKQCGHAFTQKSQLRLHE 140
P++C QCG +FTQ+ L +H+
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQ 31
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP+ C+ CGK+F+ R L H +H KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+IC +CG AFT +S L H+ H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 201 GVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPIS 235
G +PYSC+ C +TF D L +H+ H + P S
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+GEKP+ C+ C ++FS L H +H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
EKP++C CGK + +R L H VH G K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ C C K + L H R+HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 151 CNVCPFKFTTKSDLQRHQRSH-EGVKPFR--CEYCDKTFTRQIIMKEHLNR 198
C +C F K+ L HQR H E V R CE+C K F + + H ++
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP++C CGK+F + H +H G +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F + S H R+HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRH 143
+KP++C +CG AF KS L +H H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAG 117
KP+ C+ CGK+F + L H H G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHA 116
E PF+CS C + F+QR L H HA
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 204 PYSCSHCDKTFFDAQSLNKHKLSHKTSADPIS 235
P+ CS CD+ F L +H+ +H + P S
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 40 NICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVF--NNIKSLKTHSRIHTGEKPFRCSV 97
NI + I +K VE H T TCTVC++ F +I++ R+ RC V
Sbjct: 114 NIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVP------RCPV 167
Query: 98 C-----------GKSFSQRGIL 108
C G+ QR +L
Sbjct: 168 CTGVVKPDIVFFGEPLPQRFLL 189
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 40 NICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVF--NNIKSLKTHSRIHTGEKPFRCSV 97
NI + I +K VE H T TCTVC++ F +I++ R+ RC V
Sbjct: 115 NIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVP------RCPV 168
Query: 98 C-----------GKSFSQRGIL 108
C G+ QR +L
Sbjct: 169 CTGVVKPDIVFFGEPLPQRFLL 190
>pdb|2ELP|A Chain A, Solution Structure Of The 13th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 147 RHFACNVCPFKFT-TKSDLQRHQRSHEGVK 175
R C C F F SDLQRH +HEGVK
Sbjct: 8 RAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHF 149
++C HAF + +LRL+E G +RHF
Sbjct: 66 LRKCAHAFKRIIELRLNEEEAGRLRHF 92
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 40 NICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVF--NNIKSLKTHSRIHTGEKPFRCSV 97
NI + I +K VE H T TCTVC++ F +I++ R+ RC V
Sbjct: 108 NIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVP------RCPV 161
Query: 98 C-----------GKSFSQRGIL 108
C G+ QR +L
Sbjct: 162 CTGVVKPDIVFFGEPLPQRFLL 183
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 62 LGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ + C C++ F + +L+ H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 202 VQPYSCSHCDKTFFDAQSLNKHKLSH 227
++PY C HC + F D +L +H H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
KP+ C C + F+ G L H+ +H G K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGV 202
G+KPF+C CD +F+R + H RH V
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRHMLV 33
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVH 115
TG KPF+C C SFS+ S HLA+H
Sbjct: 3 TGIKPFQCPDCDWSFSR----SDHLALH 26
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 117 GVKPHICKQCGHAFTQKSQLRLHEMRH 143
G+KP C C +F++ L LH RH
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+GEKP+ C VCG F ++ +S H+ H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEG 173
++C VC +F K + H RSH+G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +CG AF + SQL +H+ H
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTH 35
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
T EKP+ CS CGK+F + L H H+G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSHKTSADPIS 235
+PY CS C K F L H+ +H + P S
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGESGPSS 43
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE 90
+ C C+K FN +L H R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEG 173
+ CN C F TKS+L HQR+H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTG 37
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAG 117
EKP+ C+ C K+F+ + L H H G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C +C AF KS L +H+ H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ C C+K F I L H R+HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSH--KTSADPISS 236
+PY C C KTF LN+HK H + S+ P S
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSSG 46
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+KP+ C C K+F Q G L+ H VH G
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F SL H R HTGEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
R + C C F TKS L H+RSH G KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
++P+ C CGK+F + L H H G KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EK + C CGKSFS+ L H +H+G KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C K F+ L H R+H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKP 92
C+ C+K F+ L H RIHTGE P
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRH 148
KP C +CG AF KSQL +H+ H + +H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 91 KPFRCSVCGKSFSQRGILSSHL-AVHAGVKPHICK 124
KP+ C CGK FS+ L+ H+ VH +PH C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAG 117
E P+ C CGK FS++ L SH H+G
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
F C VC + F ++LK H R HT EK
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVK 175
F C VC F + L+RH RSH K
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKP 92
C+ C K F + H RIHTGEKP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
E+ RCS CGK F Q H +H G KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKP C CGKSFS L H +H G P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KPH C++CG +F+ SQL +H+ H
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIH 35
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKP 92
C C K F+ L H RIHTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
KP +C +CGK+F+Q L +H+ H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEK 91
C +C K F SL H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 66 TCTVCKKVFNNIKSLKTHSRIHTGEK 91
TC C K F I +L+ H R+H GEK
Sbjct: 14 TCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 203 QPYSCSH--CDKTFFDAQSLNKHKLSHKTSA 231
+PYSC H CDK F L +HK SH+ A
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFT 187
R + C C F TK L RH + E V P +Y ++F+
Sbjct: 9 RVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFS 49
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 145 NIRHFACNVCPFKFTTKSDLQRHQRS 170
N + CNVC +F+T S L H RS
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRS 138
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 145 NIRHFACNVCPFKFTTKSDLQRHQRS 170
N + CNVC +F+T S L H RS
Sbjct: 95 NPSSYVCNVCNARFSTMSALSEHLRS 120
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G K H C CG AF+ KSQL +H+ H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 173 GVKPFRCEY--CDKTFTRQIIMKEHLNRHKGV 202
G+KPF+C + CD++F+R + H RH V
Sbjct: 4 GIKPFQCTWPDCDRSFSRSDHLALHRKRHMLV 35
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C C F+ SL+ H +H GEKP
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EK ++C C FSQ L H VH G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKP 176
C+ C FT KS L +HQR H G KP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKP 92
C C + F L H RIHTGEKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
F C VC + F + LK H R HT EK
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
F C VC + F + LK H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
EKPF+C CG +FS L HL H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP++C++CG F Q SQL H +RH
Sbjct: 1 KPYVCERCGKRFVQSSQLANH-IRH 24
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ C+ C+K F+ L H R+HT EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 149 FACNVCPFKFTTKSDLQRHQ-RSHE-GVKPFRCEYCDKTFTRQIIMKEHL 196
+ C VC +T S+ RH SH+ VK + C +C K FTR+ M H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 89 GEKPFRCSVCGKSFSQRGILSSHLAV--HAGVKPHICKQCGHAFTQKSQLRLH 139
GE +RC VC + ++ H VK + C C FT+K + H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLA 113
+KP+ C +CGK + R LS H A
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVH 115
KP++C CG+SFS HL H
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETH 26
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 174 VKPFRCEYCDKTFTRQIIMKEHLNRH 199
+KP++C+YC ++F+ HL H
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRH 199
KPF+C C+ + +K H+NRH
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRH 199
+P+ C C K F R + EHL RH
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVH 115
E+P+ C+ CGK+F + L HL H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+G++PF C +C +F+ + + HL VH
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSH 171
R F C +C FTTK++ RH + H
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 95 CSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKS 134
C CG ++ HL H KP +C +CG Q++
Sbjct: 130 CRNCGATY--------HLIFHPPAKPGVCDKCGGELYQRA 161
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 147 RHFAC--NVCPFKFTTKSDLQRHQRSHEGVK 175
R F C + C +FT +LQRH+R+H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHE 172
+ C +C F KS L RHQR H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>pdb|3IJ6|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|B Chain B, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|C Chain C, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
pdb|3IJ6|D Chain D, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Lactobacillus Acidophilus
Length = 312
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 3 LDDMDSVLTNDPVENASKILALCMRKETEAQQKSLACNICSMVFCDEIVLNKHVEEHSTL 62
L D+D LT P +N ++++L + + +C + L+ V++H
Sbjct: 40 LMDLDERLTKWPDQNTKQVISLANISPEDFTDSKTSAELCQSANEE---LSNLVDQHP-- 94
Query: 63 GKFTCTVCKKVFNNIKSL-KTHSRIHTGEKPFRCSV----CGKSFSQ---RGILSSHLAV 114
GKF V NNI+S K S I E + GKS + R +L+ +
Sbjct: 95 GKFAGAVAILPMNNIESACKVISSIKDDENLVGAQIFTRHLGKSIADKEFRPVLAQAAKL 154
Query: 115 HAGVKPH 121
H + H
Sbjct: 155 HVPLWMH 161
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 8 SVLTNDPVENASKILALCMRKETEAQQKSLACNIC 42
SVL DP EN SK L KE ++ + A +C
Sbjct: 187 SVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVC 221
>pdb|1EJ6|B Chain B, Reovirus Core
pdb|1EJ6|C Chain C, Reovirus Core
pdb|2CSE|V Chain V, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|W Chain W, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1275
Score = 26.9 bits (58), Expect = 9.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 30 TEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCT---VCKKVFNNIKSLKTH 83
T + C++CS V + L+ HV H G T T + + + I S + H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNH 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,905,614
Number of Sequences: 62578
Number of extensions: 250822
Number of successful extensions: 1975
Number of sequences better than 100.0: 205
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 1097
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)