RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2288
(247 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 156 bits (396), Expect = 5e-48
Identities = 65/163 (39%), Positives = 95/163 (58%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ C C K F+ L H R HTGEKP++C CGKSFS + L+ H H G KP+ C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 125 QCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDK 184
+CG +F+Q++ LR H+ H + +AC C F+ + L+ HQR+H G KP++C C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 185 TFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+F+R+ + H H G +PY C C K+F +LN H+ +H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 147 bits (373), Expect = 2e-44
Identities = 53/154 (34%), Positives = 83/154 (53%)
Query: 74 FNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQK 133
S + + GEKP+ C CGKSFS+ L+ H H G KP+ C +CG +F+ K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 134 SQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMK 193
L H+ H + + C C F+ +++L+ HQR+H G KP+ C C K+F++ ++
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
H H G +PY C C K+F +L+ H+ +H
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 121 bits (306), Expect = 2e-34
Identities = 51/138 (36%), Positives = 72/138 (52%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C C F D+ L +H H+ + C C K F+ +L+ H R HTGEKP+ C C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 99 GKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKF 158
GKSFSQ L +H H G KP+ C +CG +F+++ L H+ H + + C C F
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Query: 159 TTKSDLQRHQRSHEGVKP 176
+ + L HQR+H G K
Sbjct: 172 SRRDALNVHQRTHTGKKT 189
Score = 107 bits (269), Expect = 5e-29
Identities = 42/127 (33%), Positives = 67/127 (52%)
Query: 101 SFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTT 160
S + A+ G KP+ C +CG +F++ L H+ H + + C C F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 161 KSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSL 220
K DL RHQR+H G KP++C C K+F+++ ++ H H G +PY+C C K+F L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 221 NKHKLSH 227
H+ +H
Sbjct: 122 RAHQRTH 128
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 124 bits (313), Expect = 1e-35
Identities = 54/172 (31%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCS--VCGKSFSQRGILSSHLAVHAGVKPHICKQ-- 125
C +N L+ H HTGEKPF C C K F+ L+ H H G K C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 126 CGHAFTQKSQLRLHEMRH-GN-IRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRC-- 179
C FT K+ ++ H R I + C+ C F + L+ HQ SH P+ C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 180 EYCDKTFTRQIIMKEHLNRHKGVQ---PYSCSHCDKTFFDAQSLNKHKLSHK 228
E CDK F+ +K H H G SCS KT+ L H+
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAECHQ 189
Score = 119 bits (300), Expect = 1e-33
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 83 HSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQ--CGHAFTQKSQLRL 138
+ K + CS CG ++++ L +HL H G KP CK+ C FT L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 139 HEMRHGNIRHFACN--VCPFKFTTKSDLQRHQRSHEGVK--PFRCEY--CDKTFTRQIIM 192
H + H ++F C+ C +FTTK+++++H +K + C + C K F + +
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 193 KEHLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
K H H PY C H CDK F L +H+ H
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 120 bits (304), Expect = 5e-35
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNI 146
+G C C K F + L H H G KP C +CG + +K L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCM 60
Query: 147 ----RHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK 200
+ F C+VC F + +L+ H SH G P++C C + F + K+ L H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ----KKDLQSHM 114
Score = 99.1 bits (248), Expect = 1e-26
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSR---IHTGEKPFRC 95
C C F + L H +H+ F C C K + ++L H ++ E+ F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 96 SVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMR 142
SVC ++F +R L H+ H G P+ C C F QK L+ H ++
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 50.6 bits (122), Expect = 2e-08
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 171 HEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
G C C K F + +K H +H G +P+ C C K +F ++L +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 30.6 bits (70), Expect = 0.19
Identities = 8/29 (27%), Positives = 8/29 (27%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G C C K F L H H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 111 bits (280), Expect = 3e-31
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 13/152 (8%)
Query: 70 CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH-------- 121
IK + I + C ++FS L +H+ + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 122 -ICKQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFR 178
C + G +F K +L H H + F C C F +L+ H+R+H G KPF+
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 179 CEY--CDKTFTRQIIMKEHLNRHKGVQPYSCS 208
CE+ CD+ F K+H++ H + S
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 94.7 bits (236), Expect = 1e-24
Identities = 40/168 (23%), Positives = 47/168 (27%), Gaps = 43/168 (25%)
Query: 25 CMRKETEAQQKSLACNICSMVFCDEIVLNKHVEEH---------STLGKFTCTVCKKVFN 75
C + Q S C F L HV C K F
Sbjct: 16 CKWIDEA--QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 76 NIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHIC--KQCGHAFT 131
L H R+HTGEKPF C CGK F++ L H H G KP C + C F
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA 133
Query: 132 QKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC 179
SD ++H H K
Sbjct: 134 N----------------------------SSDRKKHMHVHTSDKSGPS 153
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 109 bits (276), Expect = 4e-31
Identities = 25/101 (24%), Positives = 35/101 (34%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRL 138
+K F C CG+ F++ L H H +P+ C C AF ++ LR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 139 HEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC 179
H H + F C C F L H+ H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 74.0 bits (183), Expect = 3e-17
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+TC +C K F L+ H IH+ EKPF+C CGK F Q L+ H +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 45.9 bits (110), Expect = 5e-07
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+IC F + L H HS F C C K F ++L H +H +
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 111 bits (279), Expect = 6e-31
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLA---VHAGVKPHICKQCGH-----AFTQKSQLRLHEM 141
E R C + F + L H+ +H K +C G F + L +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 142 RHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLN 197
RH + C C ++ +L+ H RSH G KP+ CE+ C K F+ +H N
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 198 R-HKGVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
R H +PY C C K + D SL KH +
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 99.2 bits (248), Expect = 3e-26
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 39 CNICSMVFCDEIVLNKHVEE---HSTLGKFTCTVC-----KKVFNNIKSLKTHSRIHTGE 90
+ CS F + L H+ H +F C + F L H R HTGE
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 91 KPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQ--CGHAFTQKSQLRLHEMR-HGN 145
KP +C+ C KS+S+ L +HL H G KP++C+ C AF+ S H+ R H N
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 146 IRHFACNV--CPFKFTTKSDLQRHQRSHEG 173
+ + C + C ++T S L++H ++ G
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 108 bits (273), Expect = 1e-30
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
S +G+K + C CGKSF+ + H+++H G++P+ C CG F K L H H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 144 GNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTR 188
I+ + CN+C +F + H+ K + ++ T
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Score = 88.7 bits (221), Expect = 7e-23
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ C VC K F L H +IHTG KP+ C++C K F R H V + K +
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95
Query: 125 QCGHAFTQKSQLR 137
+ T+ S
Sbjct: 96 KAEQNTTEASGPS 108
Score = 60.1 bits (147), Expect = 5e-12
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C +C F + L H++ H+ + + C +C K F S H + + K + +
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Query: 99 GKSFSQRGILSS 110
++ ++ SS
Sbjct: 98 EQNTTEASGPSS 109
Score = 49.0 bits (118), Expect = 5e-08
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 169 RSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCSHCDKTFFDAQSLNKHK 224
G K + C+ C K+FT K +RH G++PY C C K F L H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTH----KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
Query: 225 LSH 227
H
Sbjct: 58 KIH 60
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 105 bits (265), Expect = 2e-29
Identities = 35/93 (37%), Positives = 45/93 (48%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNI 146
P +C VCGK FS++ L +H+ H GVKP+ CK C +A S L H H +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC 179
R F C +CP+ S L H RSH G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 76.3 bits (189), Expect = 3e-18
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C +C F + L H+ H+ + + C C + SL H RIH+ E+PF+C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 99 GKSFSQRGILSSHLAVHAGVKPHIC 123
+ L+ HL H G
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 55.1 bits (134), Expect = 2e-10
Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 170 SHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
S P +CE C K F+R+ +K H+ H GV+PY C CD D+ SLNKH H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 101 bits (253), Expect = 2e-27
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
C C K+F + +++ H H G + C+ CGK+F + L H VH G KP
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 123 C--KQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPF 177
C + CG F+ LR H H R + C C KF ++L+ H +H K
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 96.4 bits (241), Expect = 1e-25
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
+ C C K F + HL H G + H+C +CG AF + S+L+ H++ H +
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 148 HFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQ 203
F C C +F+ +L+ H R H G +P+ C + C+K F + +K H+ H +
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Query: 204 PY 205
Sbjct: 122 NN 123
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 97.6 bits (244), Expect = 1e-26
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 32/112 (28%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAG----VKPHICKQCGHAFTQKS 134
S + R HTGEKP+ CS C K+F Q+ +L H + +C +CG FT+++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 135 QLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTF 186
+ RH + G E +
Sbjct: 62 TMA----------------------------RHADNCAGPDGVEGENSGPSS 85
Score = 80.6 bits (200), Expect = 5e-20
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE----KPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
+ C+ C K F + L H + + F CS CGK+F++R ++ H AG
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 121 HICKQCGHAF 130
+ G +
Sbjct: 76 VEGENSGPSS 85
Score = 61.0 bits (149), Expect = 1e-12
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 164 LQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG----VQPYSCSHCDKTFFDAQS 219
R+H G KP+ C +CDKTF ++ ++ H R+ + CS C KTF +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 220 LNKHKLSH 227
+ +H +
Sbjct: 63 MARHADNC 70
Score = 57.2 bits (139), Expect = 3e-11
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 39 CNICSMVFCDEIVLNKHVEEH---STLGK-FTCTVCKKVFNNIKSLKTHSRIHTGEKPFR 94
C+ C F + +L+ H + + + + F C+ C K F ++ H+ G
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 95 CSVCGKSF 102
G S
Sbjct: 78 GENSGPSS 85
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 97.1 bits (243), Expect = 2e-26
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
F C +C K F +L TH IH+ +P+ C CGK F Q+ + H +H G KPH C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 125 QCGHAFTQKSQLRLHEMRH 143
CG AF+Q S L H +H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 67.1 bits (165), Expect = 5e-15
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C IC F L+ H+ HS + C C K F+ +K H+ IHTGEKP +C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 99 GKSFSQRGILSSHLAVH 115
GK+FSQ SS+L H
Sbjct: 64 GKAFSQ----SSNLITH 76
Score = 64.0 bits (157), Expect = 7e-14
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
F C +C F S L H H +P+ C+YC K F ++ MK+H H G +P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 209 HCDKTFFDAQSLNKHKLSH 227
C K F + +L H H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 32.8 bits (76), Expect = 0.014
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTG 89
C C F + + KH H+ C VC K F+ +L THSR HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 97.6 bits (244), Expect = 3e-26
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 34/146 (23%)
Query: 88 TGEKPFRCS--VCGKSFSQRGILSSHLAVHAGVKPHIC--KQCGHAFTQKSQLRLHEMRH 143
+ ++PF C+ C K + + L H H G KP+ C K C F++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSD--------- 52
Query: 144 GNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQ 203
L+RHQR H GVKPF+C+ C + F+R +K H H G +
Sbjct: 53 -------------------QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 204 PYSCS--HCDKTFFDAQSLNKHKLSH 227
P+SC C K F + L +H H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 89.5 bits (223), Expect = 5e-23
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C C++ F+ LK H R HTG KPF+C C + FS+ L +H H G KP
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 123 CK--QCGHAFTQKSQLRLHEMRH 143
C+ C F + +L H H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 96.0 bits (240), Expect = 7e-26
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAG--VKPHI 122
C +C K+F ++ L H H+GEKP+ C VCG F ++ +S H+ H G KP+I
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 123 CKQCGHAFTQKSQLRLHEMR 142
C+ CG F++ L H +
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQ 87
Score = 91.8 bits (229), Expect = 3e-24
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 34/115 (29%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNI 146
+G C +CGK F L+ H H+G KP+ C CG F +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR-------------- 47
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSH--EGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
K + H RSH KP+ C+ C K F+R +HLN H
Sbjct: 48 --------------KDRMSYHVRSHDGSVGKPYICQSCGKGFSR----PDHLNGH 84
Score = 69.8 bits (172), Expect = 7e-16
Identities = 28/115 (24%), Positives = 36/115 (31%), Gaps = 38/115 (33%)
Query: 115 HAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGV 174
+G C+ CG F L RH+ SH G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHL----------------------------NRHKLSHSGE 33
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHK------GVQPYSCSHCDKTFFDAQSLNKH 223
KP+ C C F R K+ ++ H +PY C C K F LN H
Sbjct: 34 KPYSCPVCGLRFKR----KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 51.3 bits (124), Expect = 5e-09
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 171 HEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCSHCDKTFFDAQSLNKHKLS 226
G CE C K F HLNRHK G +PYSC C F ++ H S
Sbjct: 2 SSGSSGVACEICGKIFRD----VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 227 H 227
H
Sbjct: 58 H 58
Score = 37.1 bits (87), Expect = 6e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 39 CNICSMVFCDEIVLNKHVEEHS-TLGK-FTCTVCKKVFNNIKSLKTHS-RIHTGEK 91
C +C + F + ++ HV H ++GK + C C K F+ L H ++H+G
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 94.5 bits (236), Expect = 3e-25
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHI 122
+ C V C + F+ SL H RIHTG+KPF+C +C ++FS+ L++H+ H G KP
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 123 CKQCGHAFTQKSQLRLHEMRH 143
C CG F + + + H H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 81.4 bits (202), Expect = 3e-20
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 34/113 (30%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIR 147
E+P+ C V C + FSQ G L+ H+ +H G KP C+ C F++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSD------------- 48
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK 200
L H R+H G KPF C+ C + F R + RH
Sbjct: 49 ---------------HLTTHIRTHTGEKPFACDICGRKFAR----SDERKRHT 82
Score = 74.4 bits (184), Expect = 1e-17
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 42 CSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKS 101
C F L +H+ H+ F C +C + F+ L TH R HTGEKPF C +CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 102 FSQRGILSSHLAVHAGVK 119
F++ H +H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 68.3 bits (168), Expect = 2e-15
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 158 FTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDA 217
F+ L RH R H G KPF+C C + F+R + H+ H G +P++C C + F +
Sbjct: 16 FSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 218 QSLNKHKLSH 227
+H H
Sbjct: 76 DERKRHTKIH 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 92.2 bits (230), Expect = 2e-24
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
F C +C + F+ L TH R HTGEKPF C +CG+ F++ H + + P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILED 62
Query: 125 QCGHAFTQKSQLRLH 139
+ ++ L
Sbjct: 63 KVEELLSKNYHLENE 77
Score = 67.5 bits (166), Expect = 4e-15
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQ---PY 205
F C +C F+ L H R+H G KPF C+ C + F R + RH+ +Q P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR----SDERKRHRDIQHILPI 59
Query: 206 SCSHCDKTFFDAQSLNKHKLSHKT 229
++ L K
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKK 83
Score = 53.3 bits (129), Expect = 9e-10
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 174 VKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+KPF+C C + F+R + H+ H G +P++C C + F + +H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/77 (15%), Positives = 16/77 (20%), Gaps = 33/77 (42%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
C+IC F S K H I P
Sbjct: 34 CDICGRKFA-----------RSD-----------------ERKRHRDIQH-ILPILEDKV 64
Query: 99 GKSFSQRGILSSHLAVH 115
+ S+ + HL
Sbjct: 65 EELLSK----NYHLENE 77
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 89.5 bits (223), Expect = 2e-23
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 54 KHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSH 111
K H C K + LK H R HTGEKP+ C CG F++ L+ H
Sbjct: 1 KRTATH----TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 112 LAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
H G +P C++C AF++ L LH RH
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 80.3 bits (199), Expect = 6e-20
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 34/116 (29%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK--QCGHAFTQKSQLRLHEMRHG 144
T + CGK++++ L +HL H G KP+ C CG F + +L
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDEL-------- 53
Query: 145 NIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK 200
RH R H G +PF+C+ CD+ F+R +HL H
Sbjct: 54 --------------------TRHYRKHTGHRPFQCQKCDRAFSR----SDHLALHM 85
Score = 66.0 bits (162), Expect = 2e-14
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 142 RHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC--EYCDKTFTRQIIMKEHLNRH 199
+ C +T S L+ H R+H G KP+ C + C F R + H +H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 200 KGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +P+ C CD+ F + L H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 28.3 bits (64), Expect = 0.79
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 52 LNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIH 87
L +H +H+ F C C + F+ L H + H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 88.7 bits (221), Expect = 3e-23
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRL 138
HS + +KP++C C SF +G L+SH VH G KP+ C CG F + + L+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 139 HEMRH 143
H H
Sbjct: 64 HTRIH 68
Score = 70.9 bits (175), Expect = 2e-16
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
+ C C+ F +L +H +HTGEKP+RC++CG F++ L +H +H+G KP+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 64.0 bits (157), Expect = 7e-14
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 108 LSSHLA----VHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSD 163
+ H + KP+ C +C +F K L H+ H + + CN+C +F ++
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 164 LQRHQRSHEGVKPF 177
L+ H R H G KP+
Sbjct: 61 LKTHTRIHSGEKPY 74
Score = 61.3 bits (150), Expect = 7e-13
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 162 SDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLN 221
H KP++C+ C +F + + H H G +PY C+ C F +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 222 KHKLSH 227
H H
Sbjct: 63 THTRIH 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 88.7 bits (221), Expect = 3e-23
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAG--VKPHICKQCGHAFTQKSQL 136
S + R H+GEKP+ C +C F+Q G + H+ V C C +KS L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 137 RLHEMRH 143
+H +
Sbjct: 62 GVHLRKQ 68
Score = 67.5 bits (166), Expect = 3e-15
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGE--KPFRCSVCGKSFSQRGILSSHL-AVHAGVKPH 121
+ C +C F ++K H E F C C +++ L HL H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 67.5 bits (166), Expect = 3e-15
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 164 LQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG--VQPYSCSHCDKTFFDAQSLN 221
R+H G KP+ C C FT+ MK H+ + V + C HCD L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 222 KH 223
H
Sbjct: 63 VH 64
Score = 36.3 bits (85), Expect = 9e-04
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 195 HLNRHK----GVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C C F + ++ H L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 86.0 bits (214), Expect = 3e-22
Identities = 25/65 (38%), Positives = 31/65 (47%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRL 138
S + ++C CGKSFS LS H H G KP+ C +CG AF Q+S L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 139 HEMRH 143
H H
Sbjct: 65 HHRVH 69
Score = 70.5 bits (174), Expect = 2e-16
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
+ C C K F++ L H R HTGEKP++C CGK+F QR L H VH G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 59.0 bits (144), Expect = 5e-12
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 161 KSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSL 220
R + + ++C+ C K+F+ + +H H G +PY C C K F L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 221 NKHKLSH 227
H H
Sbjct: 63 IGHHRVH 69
Score = 57.5 bits (140), Expect = 2e-11
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 28/102 (27%)
Query: 104 QRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSD 163
G + + C +CG +F+ S D
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSS----------------------------D 33
Query: 164 LQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPY 205
L +H+R+H G KP++C+ C K F ++ + H H G P
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 85.6 bits (213), Expect = 4e-22
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 80 LKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLH 139
S IH+GEKP+ C CGK+FS+ IL H VH G KP+ C +CG AF+Q S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 140 EMRH 143
+ H
Sbjct: 62 QRIH 65
Score = 70.6 bits (174), Expect = 2e-16
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
+ C C K F+ L H R+HTGEKP++C CGK+FSQ L +H +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 57.5 bits (140), Expect = 1e-11
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 164 LQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
H G KP+ C C K F+R I+ +H H G +PY C C K F L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 224 KLSH 227
+ H
Sbjct: 62 QRIH 65
Score = 57.1 bits (139), Expect = 2e-11
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 28/98 (28%)
Query: 108 LSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRH 167
S +H+G KP+ C +CG AF++ S L +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILV----------------------------QH 33
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPY 205
QR H G KP++C C K F++ + H H
Sbjct: 34 QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 85.0 bits (211), Expect = 2e-21
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 64 KFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVK 119
C C KV+ LK H R HTGEKP++C+ C F++ L+ H H G K
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 120 PHICKQCGHAFTQKSQLRLHEMRHGN 145
P C C +F++ L LH RH N
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 78.1 bits (193), Expect = 7e-19
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 101 SFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKF 158
S G +H P C +T+ S L+ H H + + C C ++F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 159 TTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK 200
+L RH R H G KPF+C C+++F+R +HL H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSR----SDHLALHM 95
Score = 73.4 bits (181), Expect = 3e-17
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 74 FNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC--KQCGHAFT 131
+ RIH + P C K +++ L +HL H G KP+ C + C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 132 QKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHE 172
+ +L H +H + F C VC F+ L H + H+
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 31.4 bits (72), Expect = 0.073
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 52 LNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHT 88
L +H +H+ F C VC + F+ L H + H
Sbjct: 63 LTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 81.8 bits (203), Expect = 1e-20
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 85 RIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+ P +CS C S S + L H +H +P C C Q S L H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 69.4 bits (171), Expect = 5e-16
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
C+ C ++ +L+ H RIH ++PF+C+ C Q LS H+ G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS--GP 67
Query: 125 QCG 127
G
Sbjct: 68 SSG 70
Score = 59.0 bits (144), Expect = 4e-12
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 28/96 (29%)
Query: 113 AVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHE 172
+ + P C +C ++ + K+ L+ H+R H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKA----------------------------ALRIHERIHC 33
Query: 173 GVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
+PF+C YC + + +H+ + G S
Sbjct: 34 TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 56.0 bits (136), Expect = 5e-11
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 169 RSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
S P +C C + + + ++ H H +P+ C++C +L+KH
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 76.4 bits (189), Expect = 1e-18
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 85 RIHTGEKPFRCSVCGKSFSQRGILSSHL--AVHAGVKPHICKQCGHAFTQKSQLRLHEMR 142
GE +RC VC + ++ H + VK + C C FT+K + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 143 H 143
Sbjct: 63 I 63
Score = 64.9 bits (159), Expect = 3e-14
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRI--HTGEKPFRCSVCGKSFSQRGILSSHLAVHAGV 118
+ C VC +V+ +I + H K + C C K F+++ +++H+ + +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 59.1 bits (144), Expect = 3e-12
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK------GVQPYSCSHCDKTFFDAQSLN 221
+ + EG +RC+ C + +T + RH V+ Y C C K F ++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTH----ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMT 57
Query: 222 KHKLSH 227
H
Sbjct: 58 AHVKII 63
Score = 57.9 bits (141), Expect = 1e-11
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 149 FACNVCPFKFTTKSDLQRHQRS--HEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGV 202
+ C VC +T S+ RH + VK + C +C K FTR+ M H+ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 31.4 bits (72), Expect = 0.032
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTS 230
+G Y C C + + + +H ++
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR 36
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 76.7 bits (189), Expect = 1e-18
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVH---AGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G +C +CG + Q+ L+ H H C+ CG F + + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 144 GNIRHFACNVCP 155
A
Sbjct: 62 HPALLLAPQESS 73
Score = 70.1 bits (172), Expect = 4e-16
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHT---GEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
C +C SL H R H F C CGK F + +++H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 122 ICKQC 126
++
Sbjct: 68 APQES 72
Score = 61.7 bits (150), Expect = 5e-13
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 171 HEGVKPFRCEYCDKTFTRQIIMKEHLNRH---KGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +CE C T ++ + H +H + C C K F S+ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 228 KTSADPISSAKGSKLFG 244
+ G
Sbjct: 62 HPALLLAPQESSGPSSG 78
Score = 60.9 bits (148), Expect = 1e-12
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSH---EGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPY 205
C +C F K+ L HQR H F CE+C K F + + H ++
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 206 SCSHCDK 212
+
Sbjct: 68 APQESSG 74
Score = 43.2 bits (102), Expect = 3e-06
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 35 KSLACNICSMVFCDEIVLNKHVEEHSTLGK---FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
L C IC + LN H +H+ F C C K F S+ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 92 PFRCSVCGKSFS 103
S
Sbjct: 66 LLAPQESSGPSS 77
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 75.7 bits (187), Expect = 4e-18
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 66 TCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHIC 123
C K F LK H HT + P+ C C K FS L H VHAG
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 124 KQCGHAFTQKSQLRLHEMR 142
C + H
Sbjct: 65 DSCSFVGKTWTLYLKHVAE 83
Score = 61.9 bits (151), Expect = 6e-13
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCE 180
+ CG AF + +QL++H+ H + C C +F+ S L+RH++ H G + +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 181 YCDKTFTRQIIMKEHLNR 198
C + +H+
Sbjct: 66 SCSFVGKTWTLYLKHVAE 83
Score = 54.9 bits (133), Expect = 2e-10
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 153 VCPFK-----FTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPY 205
VC F+ F + L+ HQ SH P+ C + CDK F+ +K H H G
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 206 SCSHCDKTFFDAQSLNKH 223
C KH
Sbjct: 63 KDDSCSFVGKTWTLYLKH 80
Score = 46.1 bits (110), Expect = 3e-07
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSH 111
+ C C K F+ LK H ++H G + C + H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 75.3 bits (186), Expect = 5e-18
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 33/105 (31%)
Query: 87 HTGEKPFRCSV--CGKSFSQRGILSSHL-AVHAGVKPHICKQ--CGHAFTQKSQLRLHEM 141
+G C CG+ FS R L+ H H K C + CG +F K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKK------- 54
Query: 142 RHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTF 186
L+ H + H + + CE+ +
Sbjct: 55 ---------------------HLKEHMKLHSDTRDYICEFSGPSS 78
Score = 75.3 bits (186), Expect = 5e-18
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRI-HTGEKPFRCS--VCGKSFSQRGILSSHLAVHAGVK 119
C C ++F+N + L H + H +K F C CGKSF+ + L H+ +H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 120 PHICKQCGHAF 130
+IC+ G +
Sbjct: 68 DYICEFSGPSS 78
Score = 46.4 bits (111), Expect = 2e-07
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 171 HEGVKPFRCEY--CDKTFTRQIIMKEHLNRHK-----GVQPYSCSH--CDKTFFDAQSLN 221
G C++ C + F+ +++LN HK + +SC C K+F + L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSN----RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLK 57
Query: 222 KHKLSH 227
+H H
Sbjct: 58 EHMKLH 63
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 66.7 bits (164), Expect = 4e-15
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHA 116
F C VC + F + LK H R HT EKP+ C +C ++F++R L HA
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR----DLLIRHA 50
Score = 64.0 bits (157), Expect = 5e-14
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMR 142
+ F C VC ++F+++ L H H KP+ C C AFT++ L H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 53.6 bits (130), Expect = 3e-10
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 32/82 (39%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFR 178
+ +C+ C AF ++ L+RH RSH KP+
Sbjct: 1 RSFVCEVCTRAFARQEH----------------------------LKRHYRSHTNEKPYP 32
Query: 179 CEYCDKTFTRQIIMKEHLNRHK 200
C C++ FTR ++ L RH
Sbjct: 33 CGLCNRAFTR----RDLLIRHA 50
Score = 47.9 bits (115), Expect = 4e-08
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCSHCDKTFFDAQSLNKHK 224
+ F CE C + F R +EHL RH +PY C C++ F L +H
Sbjct: 1 RSFVCEVCTRAFAR----QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 30.5 bits (70), Expect = 0.066
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 65 FTCTVCKKVFNNIKSLKTHS-RIHTGEK 91
+ C +C + F L H+ +IH+G
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 26.3 bits (59), Expect = 2.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 204 PYSCSHCDKTFFDAQSLNKHKLSH 227
+ C C + F + L +H SH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 66.1 bits (162), Expect = 6e-15
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHL-AVHAGVKPHICKQCGHAFTQ 132
+ + KP+ C CGK FS+ L+ H+ VH +PH C+ +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 54.9 bits (133), Expect = 8e-11
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 65 FTCTVCKKVFNNIKSLKTHS-RIHTGEKPFRCSVCGKSFSQ 104
+ C C K F+ L H ++HT E+P +C V S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 49.1 bits (118), Expect = 1e-08
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNR-HKGVQPYSCSHCDKTF 214
S KP+ C+ C K F+R + H+ + H +P+ C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 27/78 (34%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + + KP+IC+ CG F++ L H ++
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHI---------------------------KQ 34
Query: 170 SHEGVKPFRCEYCDKTFT 187
H +P +C+ +
Sbjct: 35 VHTSERPHKCQVWVSGPS 52
Score = 26.0 bits (58), Expect = 2.4
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKH 223
+PY C C K F LN H
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGH 31
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 66.3 bits (161), Expect = 3e-14
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAV--HAGVKPHICKQCG---HAFTQK 133
S K + I TG FRC C ++ L+ H+ H H + +K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 134 SQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
L E + + C C F + DL H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 45.9 bits (108), Expect = 7e-07
Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 35 KSLACNICSMVFCDEIVLNKHVEE-----HSTLGKFTCTVCKKVFNNIKSLKTHSRIHTG 89
C CS + + L H+ E + +SL
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCG 127
+K +C CG SF LS H+ + G
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-14
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ +GEKPF+C CGK F+Q L SH VH G KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 1e-07
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF+CE C K FT+ + H H G +P S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 8e-07
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F L +H R+HTGEKP S
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.26
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K F L+ H+ H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 6e-14
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF+C +CGKSF R L+ H VH KP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C +C K F L HS +HT EKP S
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 44.4 bits (106), Expect = 6e-07
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCS 208
S G KPF+C+ C K+F + LNRH +P S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCG----RSRLNRHSMVHTAEKPSGPS 44
Score = 44.0 bits (105), Expect = 7e-07
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP C CG +F +S+L RH
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRL----------------------------NRHSM 33
Query: 170 SHEGVKPFRCE 180
H KP
Sbjct: 34 VHTAEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.087
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K+F LN+H + H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.0 bits (154), Expect = 9e-14
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCG 127
+ +GEKPF+C CGK F SH H+G KP G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF+CE C K F H H G +P S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
F C C K F +H R H+GEKP S G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 28.3 bits (64), Expect = 0.28
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K F+ H+ SH
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 62.5 bits (153), Expect = 1e-13
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF+C CGK FS+R L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KPF+C C K F+R+ + H H G +P S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 5e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F+ +L H ++HTGEKP S
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 1e-06
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP C +CG F+++S L H +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALN----------------------------VHHK 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 LHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.11
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K F +LN H H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 1e-13
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ TG K F C+ CGK+F+++ LS H +H G KP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 4e-07
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 109 SSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQ 168
S + G K C +CG AFT+KS L HQ
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLS----------------------------MHQ 32
Query: 169 RSHEGVKPFRCE 180
+ H G KP
Sbjct: 33 KIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 5e-07
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G K F C C K FTR+ + H H G +P S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F CT C K F +L H +IHTGEKP S
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.40
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + + C+ C K F +L+ H+ H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-13
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GEKP++C CGK + +R L H VH G K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 44.1 bits (105), Expect = 6e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K + R++ + H H G + S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K + L H R+HTGEK S
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 27.9 bits (63), Expect = 0.34
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C C K + L+ H+ H
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 63.1 bits (154), Expect = 1e-13
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 78 KSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQ 135
+ + +P+ C V C + FS+ L+ H+ +H G KP C+ C F++
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 136 LRLHEMRH 143
L H H
Sbjct: 65 LTTHIRTH 72
Score = 56.9 bits (138), Expect = 3e-11
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+ C V C + F+ L H RIHTG+KPF+C +C ++FS+ L++H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 55.0 bits (133), Expect = 2e-10
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 157 KFTTKSDLQRHQRSHEGVKPFRC--EYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTF 214
+ ++L + +P+ C E CD+ F+R + H+ H G +P+ C C + F
Sbjct: 2 EPHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 215 FDAQSLNKHKLSH 227
+ L H +H
Sbjct: 60 SRSDHLTTHIRTH 72
Score = 53.8 bits (130), Expect = 3e-10
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 134 SQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQII 191
+ L + + +R +AC V C +F+ +L RH R H G KPF+C C + F+R
Sbjct: 7 NNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 192 MKEHLNRH 199
+ H+ H
Sbjct: 65 LTTHIRTH 72
Score = 32.7 bits (75), Expect = 0.013
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 52 LNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHT 88
L +H+ H+ F C +C + F+ L TH R HT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-13
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GEKPF+C CGK F+Q L SH VH G KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 8e-08
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF+CE C K FT+ + H H G +P S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 8e-07
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G KP C++CG FTQ S L HQR
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSH----------------------------LHSHQR 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 VHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F L +H R+HTGEKP S
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.17
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K F L+ H+ H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 1e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE PF CS CGK F+ + L H +H G +P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C+ C KVF + +L H +IHTGE+P S
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G PF C C K FT + + H H G +P S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 29.0 bits (66), Expect = 0.15
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G P+ CS C K F +L H+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ GEK ++C VCGK FSQ L +H VH G KP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 4e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C VC K F+ L+TH R+HTGEKP S
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G K ++C+ C K F++ ++ H H G +P S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.64
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + Y C C K F + L H+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 2e-13
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE+P+ C+VCGK+F+ R L H +H G KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G +P+ C C K FT + + +H H G +P S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 8e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ CTVC K F + +L H +IHTGEKP S
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.18
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F D +L KH+ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 2e-13
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ TGEKP+ C VC K+F+Q+ L+ H H G KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP+ C+ C K FT++ + +H H G +P S
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C VC K F L H + HTGEKP S
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.061
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F L +H+ +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 2e-13
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ + EKP++C CGK +++R L H VH G K
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K +N +L H R+H GEK S
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 43.6 bits (104), Expect = 8e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S KP++CE C K + R++ + H H G + S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + + KP+ C+ CG + ++ L HQR
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNL----------------------------DMHQR 33
Query: 170 SHEGVKPFRC 179
H G K
Sbjct: 34 VHMGEKTSGP 43
Score = 29.0 bits (66), Expect = 0.18
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ +PY C C K + +L+ H+ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 2e-13
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+RC+ CGK+F+ R L +H +H G KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 6e-07
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+RC C K FT + + H H G +P S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 9e-07
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F + +L TH +IHTGEKP S
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.17
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F D +L H+ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 2e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEK + C CGKSFS+ L H +H+G KP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G K + CK+CG +F++ L +H+R
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLL----------------------------KHER 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 LHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F+ L H R+H+GEKP S
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G K + C+ C K+F+R + +H H G +P S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.15
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + Y+C C K+F A L KH+ H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 61.8 bits (151), Expect = 2e-13
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ TGEKP+ C CGKSF L H VH+G KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 44.1 bits (105), Expect = 6e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP+ C+ C K+F + +H H G +P S
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.6 bits (101), Expect = 2e-06
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ CK+CG +F S L +HQR
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLL----------------------------KHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 VHSGEKPSGPS 44
Score = 42.2 bits (100), Expect = 3e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F L H R+H+GEKP S
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.041
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY+C C K+F A L KH+ H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 2e-13
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ G+K F+C+ C K+F+Q L+ H +H G KP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 18/32 (56%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C CKK F SL H RIHTGEKP S
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 5e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G K F+C C KTFT+ + H H G +P S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + + C+ C KTF + SL H+ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 2e-13
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ +G+KP+ C C K+F Q G L+ H VH G +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 43.7 bits (104), Expect = 8e-07
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G KP+ CK+C F Q L +H+R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGH----------------------------LNQHKR 33
Query: 170 SHEGVKPFRCE 180
H G +
Sbjct: 34 VHTGERSSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C+K F I L H R+HTGE+ S
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 41.4 bits (98), Expect = 5e-06
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCS 208
S G KP+ C+ C KTF + HLN+HK G + S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQ----IGHLNQHKRVHTGERSSGPS 44
Score = 31.0 bits (71), Expect = 0.032
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C KTF LN+HK H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 3e-13
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+RC CGK+F+Q+ L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+RC C K F ++ + +H H G +P S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F +L H RIHTGEKP S
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.28
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F +L +H+ H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++CS CGKSF+ + L H H G +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C CG +FT KS+LR HQ+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLR----------------------------IHQK 33
Query: 170 SHEGVKPFRC 179
H G +
Sbjct: 34 CHTGERHSGP 43
Score = 44.1 bits (105), Expect = 6e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K+FT + ++ H H G + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+ C K F L+ H + HTGE+ S
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 31.0 bits (71), Expect = 0.027
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K+F L H+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 61.4 bits (150), Expect = 3e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GEKP+ C+ CGK+F + +L H HAGV
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G KP+ C +CG AF KS L H+R
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSL----------------------------LIVHER 33
Query: 170 SHEGVKPFRC 179
+H GV
Sbjct: 34 THAGVSGPSS 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
S G KP+ C C K F + ++ H H GV S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.1 bits (92), Expect = 4e-05
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
C C K F L H R H G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 28.7 bits (65), Expect = 0.19
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L H+ +H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-13
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ +GEKP++CS CGK+F + L+ H +H G +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 45.2 bits (108), Expect = 2e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K F R + EH H G +P S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 43.6 bits (104), Expect = 1e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C+ C K F+ L H RIHTG +P S
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 27.8 bits (63), Expect = 0.43
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K F LN+H+ H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-13
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
TGEKP+ C+VCGK+F L+ HL VH
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
++C VC K F L H R+HT E S
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.0 bits (105), Expect = 7e-07
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C C K F + +HL H S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 29.0 bits (66), Expect = 0.18
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PYSC+ C K F + LN+H H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 61.4 bits (150), Expect = 3e-13
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TG+KPF C+ CGKSF +G L +H +H G K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F CT C K F +L TH RIHTGEK S
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF C +C K+F + + H H G + S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 16/70 (22%), Positives = 18/70 (25%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP C CG +F K L HQR
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLV----------------------------THQR 33
Query: 170 SHEGVKPFRC 179
H G K
Sbjct: 34 IHTGEKSGPS 43
Score = 30.6 bits (70), Expect = 0.048
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C+HC K+F +L H+ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 61.4 bits (150), Expect = 3e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TG KP+ CS C K+FS + L H H GVKP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.8 bits (112), Expect = 8e-08
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S GVKP+ C C KTF+ + + H H GV+P S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 46.0 bits (110), Expect = 1e-07
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + GVKP+ C QC F+ KSQL + HQR
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIV----------------------------HQR 33
Query: 170 SHEGVKPFRC 179
SH GVKP
Sbjct: 34 SHTGVKPSGP 43
Score = 41.4 bits (98), Expect = 5e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C+ C K F+ L H R HTG KP S
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.12
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ GV+PY CS C KTF L H+ SH
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ C+ CGK+F+ R L H +H KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+IC +CG AFT +S+L +HQ+
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTI----------------------------RSNLIKHQK 33
Query: 170 SHEGVKPFRCE 180
H KP
Sbjct: 34 IHTKQKPSGPS 44
Score = 44.0 bits (105), Expect = 7e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C C K FT + + +H H +P S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 42.1 bits (100), Expect = 3e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F +L H +IHT +KP S
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 29.8 bits (68), Expect = 0.088
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F +L KH+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 4e-13
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ +GEKP+ C CGK+F L H +H G KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 5e-07
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C+YC K F + H H G +P S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F L H RIHTGEKP S
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G KP++C CG AF ++ L RHQR
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAE----------------------------LVRHQR 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 IHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.20
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C +C K F + L +H+ H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK F+Q L H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 6e-08
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K FT+ + H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 3e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF L H IHTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 27.4 bits (62), Expect = 0.62
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++CS CGK+F+++ L H H G +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K FTR+ + H H G + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 44.4 bits (106), Expect = 4e-07
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C CG AFT+KS L + HQ+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHI----------------------------HQQ 33
Query: 170 SHEGVKPFRC 179
SH G +
Sbjct: 34 SHTGERHSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C+ C K F L H + HTGE+ S
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 30.2 bits (69), Expect = 0.064
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K F L+ H+ SH
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE+P +C+ CGKSF Q L H +H G KP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G +P +C C K+F + + +H H G +P S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F L H RIHTGEKP S
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G +PH C +CG +F Q + L +HQR
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAH----------------------------LIQHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C+ C K+F + L +H+ H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GEKP+ C+ CGK+FSQ+ ILS+H H G KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP+ C C KTF+++ I+ H H G +P S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G KP+ C +CG F+QKS L HQR
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSI----------------------------LSAHQR 33
Query: 170 SHEGVKPFRCE 180
+H G KP
Sbjct: 34 THTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F+ L H R HTGEKP S
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C KTF L+ H+ +H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C CGK F R L +H VH G KP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 9e-07
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C++CG F + DL H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFIC----------------------------RRDLYTHHM 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 VHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++CE C K F + + H H G +P S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F + L TH +HTGEKP S
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.12
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F + L H + H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ C+ CGKSF Q+ L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCS 208
S G KP+ C C K+F + K HLNRH+ G +P S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQ----KSHLNRHRRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F L H RIHTGEKP S
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.25
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K+F LN+H+ H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 61.0 bits (149), Expect = 4e-13
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
S GEKP+ C +CG F L SHL +H G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 45.6 bits (109), Expect = 2e-07
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
S G KP+ CE C F +K HL H G P S
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+ C +C F ++++LK+H RIHTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.010
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C C F Q+L H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF+C CGKS++QR L+ H VH G KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KPF+C C K++ +++ + +H H G +P S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K +N L H R+HTGEKP S
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.67
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K++ L +H+ H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE+ + CS CGK+F Q+ LS H +H G KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G + + C C K F ++ + H H+G +P S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 44.1 bits (105), Expect = 7e-07
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G + + C +CG AF QKS L HQR
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLS----------------------------MHQR 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 IHRGEKPSGP 43
Score = 41.7 bits (99), Expect = 5e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+ C K F +L H RIH GEKP S
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.17
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + Y CS C K F +L+ H+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 4e-13
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GEKP++C+ CGK F+Q L++H +H G KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 5e-08
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K FT+ + H H G +P S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C KVF L H RIHTGEKP S
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.41
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L H H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 61.0 bits (149), Expect = 5e-13
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF C+ CGKSFS L++H +H G KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 1e-07
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KPF C C K+F+ + H H G +P S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 7e-07
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP C +CG +F+ SQL HQR
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLA----------------------------THQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F+ L TH RIHTGEKP S
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C+ C K+F + L H+ H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 60.7 bits (148), Expect = 5e-13
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
S GEKP+RC CGK+FSQ+G L H+ VH G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 42.6 bits (101), Expect = 2e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 111 HLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
G KP+ C QCG AF+QK L +H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
S G KP+RC+ C K F+++ + H+ H G P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 38.7 bits (91), Expect = 5e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+ C C K F+ SL H R+HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 30.6 bits (70), Expect = 0.036
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C C K F SL H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 5e-13
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GEKPF+C CGK+F Q L+SHL +H G KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF+C+ C K F + I + HL H G +P S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F L +H RIHTGEKP S
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.54
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +P+ C C K F L H H
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-13
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TG+KP++C+ CGK F+Q L+ H +H G KP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCSH 209
S G KP++C C K FT+ HL RH+ G +P S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQ----NSHLARHRGIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 3e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF L H IHTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.44
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C+ C K F L +H+ H
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-13
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK F+Q L++H +H GVKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K FT+ + H H GV+P S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF L H RIHTG KP S
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 27.5 bits (62), Expect = 0.57
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 60.6 bits (148), Expect = 6e-13
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ C CGK+FSQ L H VH G KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C+ C K F++ + +H H G +P S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 2e-06
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ CK+CG AF+Q + L +HQR
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTH----------------------------LIQHQR 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 VHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 4e-06
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F+ L H R+HTGEKP S
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.47
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 6e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF CS C K+F+ + L H H G KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF C C K F + + H H G +P S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 9e-07
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C+ C+K FN +L H R HTGEKP S
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.090
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ CS C K F +L H+ +H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 7e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C VC KSF L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C VC K F SL H RIHTGEKP S
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C+ C K+F + H H G +P S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.15
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C C K+F SL H+ H
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 7e-13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE+ + CS CGK+F+++ L H +H G KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G + + C C K F R+ + H H G +P S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 4e-06
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C+ C K F +L H RIHTGEKP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.32
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + Y CS C K F +L H+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 8e-13
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK F+Q L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K FT+ + H H G +P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 4e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF L H IHTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.61
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 9e-13
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ TGEKP+ CS+CGKSF+++ L H +H G KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 8e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C C K+FT++ + H H G +P S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 44.1 bits (105), Expect = 7e-07
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C CG +FT+KSQL + HQ+
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHV----------------------------HQQ 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 IHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C++C K F L H +IHTGEKP S
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.073
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K+F L+ H+ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C CGK ++ + L H VH G +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 43.7 bits (104), Expect = 9e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K +N+ +L H ++HTGE+P S
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 43.7 bits (104), Expect = 9e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++CE C K + + + H H G +P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C++CG + K L HQ+
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLD----------------------------MHQK 33
Query: 170 SHEGVKPFRC 179
H G +P
Sbjct: 34 VHTGERPSGP 43
Score = 29.4 bits (67), Expect = 0.097
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K + +L+ H+ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 1e-12
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ G P++CS C KSFS + L H +H KP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 45.6 bits (109), Expect = 2e-07
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + AGV P+ C QC +F+ K +L + HQR
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLV----------------------------HQR 33
Query: 170 SHEGVKPFRC 179
H KP
Sbjct: 34 MHTREKPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S GV P++C C+K+F+ ++ + H H +P S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 44.1 bits (105), Expect = 6e-07
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+ C+K F+ L H R+HT EKP S
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 31.7 bits (73), Expect = 0.014
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ GV PY CS C+K+F L H+ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C CGK F + L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K F R + H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 43.2 bits (103), Expect = 1e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF L H IHTGEKP S
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.91
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F L +H+L H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TG KP+ C+ CGK+FS L++H +H G KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S GVKP+ C C K F+ + H H G +P S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 6e-07
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F+ SL TH IHTGEKP S
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + GVKP++C +CG AF+ S L HQ
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSS----------------------------LTTHQV 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.21
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ GV+PY C+ C K F SL H++ H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-12
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK+F R L+ H A H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K F + + H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F SL H H+GEKP S
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG AF +S L HQ
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSS----------------------------LAIHQA 33
Query: 170 SHEGVKPFRC 179
+H G KP
Sbjct: 34 THSGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C+ C K F SL H+ +H
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
TGEKP+ CSVCGK+FS R LS H +H+G KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C C K F+ + + H H G +P S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+VC K F++ +SL H RIH+G+KP S
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C CG AF+ + L HQR
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQS----------------------------LSVHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHSGKKPSGPS 44
Score = 30.9 bits (71), Expect = 0.032
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K F QSL+ H+ H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE P+ C CGK+FS++ L SH HAG KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.7 bits (112), Expect = 7e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G P+ C C K F+R+ + H H G +P S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 3e-06
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G P+ C +CG AF++K Q L HQR
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQ----------------------------LISHQR 33
Query: 170 SHEGVKPFRC 179
+H G KP
Sbjct: 34 THAGEKPSGP 43
Score = 41.3 bits (98), Expect = 7e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F+ L +H R H GEKP S
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.45
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G PY C C K F L H+ +H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 59.8 bits (146), Expect = 1e-12
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
S GEKP++C CG F Q L +H+ +H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.7 bits (104), Expect = 8e-07
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
S G KP++CE C F + ++ H+ H G P S
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+ C C F + L+ H IHTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/67 (20%), Positives = 17/67 (25%), Gaps = 28/67 (41%)
Query: 111 HLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRS 170
G KP+ C+ CG F Q + LR H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLR----------------------------AHVLI 33
Query: 171 HEGVKPF 177
H G P
Sbjct: 34 HTGSGPS 40
Score = 31.0 bits (71), Expect = 0.027
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PY C C F L H L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TG KP++C+ CGK+FSQ L+ H VH G KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K F++ + H H G +P S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 44.1 bits (105), Expect = 7e-07
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG AF+Q S+ L RHQR
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSK----------------------------LARHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 VHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F+ L H R+HTGEKP S
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.19
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L +H+ H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK+F L++H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 9e-07
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F +L TH IHTGEKP S
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 4e-06
Identities = 17/71 (23%), Positives = 20/71 (28%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG AF S L HQ
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNL----------------------------TTHQV 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C C K F + H H G +P S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.23
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F +L H++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK+FSQ L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K F++ + H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG AF+Q S+ L RHQR
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSK----------------------------LARHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F+ L H RIHTGEKP S
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.18
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-12
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF C CGK+FS L+ H +H G KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 6e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KPF C C K F+ I + +H H G +P S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 7e-07
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F++ L H RIHTGEKP S
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP C CG AF+ L +H+R
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIG----------------------------LNQHRR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.053
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K F D LN+H+ H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ GEK ++C C FSQ L H VH G KP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G K ++C CD F++ ++ H N H G +P S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 44.1 bits (105), Expect = 6e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C F+ SL+ H +H GEKP S
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 44.1 bits (105), Expect = 7e-07
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G K C++C F+Q S LR HQ
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLR----------------------------LHQN 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 VHVGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.009
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + + C CD F A SL H+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C CGK+F + H +H G +P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 43.0 bits (102), Expect = 1e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F + S H R+HTG++P S
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 43.0 bits (102), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K F +H H G +P S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 42.6 bits (101), Expect = 2e-06
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG AF S +HQR
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCT----------------------------QHQR 33
Query: 170 SHEGVKPFRCE 180
H G +P
Sbjct: 34 LHTGQRPSGPS 44
Score = 30.2 bits (69), Expect = 0.049
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F D S +H+ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK F+Q L+ H VH G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K FT+ + H H G +P S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG FTQ S L RH+R
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSH----------------------------LARHRR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 VHTGGKPSGPS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C KVF L H R+HTG KP S
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 27.9 bits (63), Expect = 0.45
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ CS CGKSF ++ L H +H G P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C C K+F ++ + H H G P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 44.1 bits (105), Expect = 8e-07
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C CG +F +KSQL HQR
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLH----------------------------VHQR 33
Query: 170 SHEGVKPFRC 179
H G P
Sbjct: 34 IHTGENPSGP 43
Score = 41.8 bits (99), Expect = 5e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+ C K F L H RIHTGE P S
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 29.8 bits (68), Expect = 0.079
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K+F L+ H+ H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
TGEKP++C VCGK+F L H +VH+G +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C VC K F L H +H+GE+P S
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP++C+ C K F + +H + H G +P S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 27.9 bits (63), Expect = 0.43
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F + L +H H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 2e-12
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP++C+ CGK F LS H +H G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP++C C K F + H H G +P S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 6e-07
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF + L H RIHTGEKP S
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.43
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L++H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ GEKP+ CS CGK+FS + L H+ H+G KP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP+ C C K F+ + + H+ H G +P S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 4e-07
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + AG KP+ C +CG AF+ KS L H R
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSY----------------------------LIIHMR 33
Query: 170 SHEGVKPFRCE 180
+H G KP
Sbjct: 34 THSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C+ C K F++ L H R H+GEKP S
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY CS C K F L H +H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ TG++P+ C CGK+F + L H H G KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G +P+ C +CG AF KS L H+R
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSS----------------------------LICHRR 33
Query: 170 SHEGVKPFRC 179
SH G KP
Sbjct: 34 SHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G +P+ C C K F + + H H G +P S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F SL H R HTGEKP S
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.057
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F SL H+ SH
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ C CGK+F L H +H G KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 7e-07
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C++CG AF SQL+ HQR
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQ----------------------------EHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 8e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP+ CE C K F ++EH H G +P S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F + L+ H RIHTGEKP S
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.098
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY+C C K F L +H+ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-12
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK 124
+ TGEKP+ C+ CGK+FS R L++H A+H G KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C C K F+ + + H H G +P S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 43.7 bits (104), Expect = 8e-07
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C QCG AF+ +S L HQ
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSS----------------------------LTTHQA 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGKKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F+ SL TH IHTG+KP S
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.067
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F SL H+ H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ GE+ RCS CGK F Q H +H G KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 9e-07
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C+ C K F + H RIHTGEKP S
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 5e-06
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G + RC C K F + +H H G +P S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G + H C CG F Q S +H+R
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASN----------------------------FIQHRR 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 IHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.21
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + + CS C K F A + +H+ H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.0 bits (144), Expect = 2e-12
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ C+ C K+F+ + L H H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 44.0 bits (105), Expect = 7e-07
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +C AF KS L + HQR
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMV----------------------------HQR 33
Query: 170 SHEGVKPFRC 179
+H G
Sbjct: 34 THTGESGPSS 43
Score = 41.3 bits (98), Expect = 6e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
C C+K FN +L H R HTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 40.9 bits (97), Expect = 8e-06
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
S G KP+ C C K F + + H H G S
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.12
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F +L H+ +H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ +GE+PF+C+ CGK F +R L+ HL +H+ K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.1 bits (105), Expect = 7e-07
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G +P C +CG F ++S L H R
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSH----------------------------LAGHLR 33
Query: 170 SHEGVKPFRC 179
H K
Sbjct: 34 LHSREKSSGP 43
Score = 44.1 bits (105), Expect = 7e-07
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C K F L H R+H+ EK S
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G +PF+C C K F R+ + HL H + S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 28.3 bits (64), Expect = 0.25
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C+ C K F L H H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 3e-12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP+ C VC K+FS L+ H VH+G KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 44.0 bits (105), Expect = 6e-07
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C VC+K F++ SL H R+H+GEKP S
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C C AF+ + L +HQR
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHAS----------------------------LTQHQR 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 VHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP+ C+ C K F+ + +H H G +P S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.043
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C C K F SL +H+ H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 58.7 bits (143), Expect = 3e-12
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEK ++C+ CGK FS+ LS H +H G KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 7e-08
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G K ++C C K F+R + +H H G +P S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C KVF+ L H +IHTGEKP S
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G K + C +CG F++ SQ L +HQ+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQ----------------------------LSQHQK 33
Query: 170 SHEGVKPFRCE 180
H G KP
Sbjct: 34 IHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.36
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + Y C+ C K F L++H+ H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 3e-12
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TG KP+ C+ CGK+F + L H H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G+KP++C +CG AF KS L H R
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLI----------------------------IHTR 33
Query: 170 SHEGVKPFRC 179
+H G
Sbjct: 34 THTGESGPSS 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
S G+KP+ C C K F + + H H G S
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
C C K F + L H+R HTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 27.8 bits (63), Expect = 0.38
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G++PY C+ C K F L H +H
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 4e-12
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ + K +C CG+ F+ + L+ H +H G KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + + K H C +CG FT KS L +HQR
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSH----------------------------LNQHQR 33
Query: 170 SHEGVKPFRC 179
H G KP
Sbjct: 34 IHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK----GVQPYSCS 208
S K +C C + FT K HLN+H+ G +P S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTL----KSHLNQHQRIHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 4e-06
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C + F L H RIHTGEKP S
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.070
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ + + C C + F LN+H+ H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 4e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+GE+P+ C+ CGK+F + L HL H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.0 bits (105), Expect = 7e-07
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C C K F L H + H EK S
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 44.0 bits (105), Expect = 8e-07
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + +G +P+ C +CG F + S L H +
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSH----------------------------LIEHLK 33
Query: 170 SHEGVKPFRC 179
H K
Sbjct: 34 RHFREKSSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G +P+ C C K F R + EHL RH + S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 29.4 bits (67), Expect = 0.13
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +PY C+ C K F L +H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 5e-12
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ GEKP++CS CGKSFS L+ H H KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 44.1 bits (105), Expect = 8e-07
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
+ C+ C K F+ L H HT EKP S
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 43.7 bits (104), Expect = 9e-07
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG +F+ + L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYR----------------------------LTQHWI 33
Query: 170 SHEGVKPFRC 179
+H KP
Sbjct: 34 THTREKPSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S EG KP++C C K+F+ + +H H +P S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 31.0 bits (71), Expect = 0.032
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ +G +PY CS C K+F + L +H ++H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 58.1 bits (141), Expect = 5e-12
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
S GE P+ C CGKSF+QRG L+ H + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 43.8 bits (104), Expect = 8e-07
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 115 HAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
G P++C QCG +FTQ+ L +H+
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 38.8 bits (91), Expect = 4e-05
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+ C C K F SL H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 36.5 bits (85), Expect = 3e-04
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
S G P+ C C K+FT++ + H P S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 31.9 bits (73), Expect = 0.014
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G PY C C K+F SL H+ S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 6e-12
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP C CGKSFS L H +H G P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KP C C K+F+ + H H G P S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 42.9 bits (102), Expect = 2e-06
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KPH C++CG +F+ SQL HQR
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLI----------------------------VHQR 33
Query: 170 SHEGVKPFRC 179
H G P
Sbjct: 34 IHTGENPSGP 43
Score = 41.8 bits (99), Expect = 4e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
C C K F+ L H RIHTGE P S
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 27.9 bits (63), Expect = 0.40
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P+ C C K+F L H+ H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.0 bits (141), Expect = 6e-12
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKP +C+ CGK+F + L H H K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.5 bits (106), Expect = 4e-07
Identities = 18/70 (25%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP C +CG AF KSQL HQR
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLI----------------------------MHQR 33
Query: 170 SHEGVKPFRC 179
+H K
Sbjct: 34 THVDDKHSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
CT C K F L H R H +K S
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 41.8 bits (99), Expect = 5e-06
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KP +C C K F + + H H + S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 29.8 bits (68), Expect = 0.075
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G +P C+ C K F L H+ +H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 1e-11
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQ 125
+ TGEKPF+C CG +FS L HL H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 44.5 bits (106), Expect = 5e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
S G KPF+C+ C F+ + +HL H+ P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 43.3 bits (103), Expect = 1e-06
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP CK+CG F+ L +H R
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLF----------------------------KHLR 33
Query: 170 SHEGVKPFRC 179
SHE P
Sbjct: 34 SHERTDPSGP 43
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C C F+ SL H R H P S
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 31.4 bits (72), Expect = 0.021
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKG 239
+ G +P+ C C F + SL KH SH DP + G
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH-ERTDPSGPSSG 46
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 57.2 bits (139), Expect = 1e-11
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHL-AVHAGVKPHIC 123
+ TG+KP+ C CGK+F Q L H H G KP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHK-----GVQPYSCS 208
S G KP+ C C K F + L RH G +P S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQ----NTSLIRHWRYYHTGEKPSGPS 45
Score = 39.9 bits (94), Expect = 2e-05
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 29/71 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G KP+ C +CG AF Q + L RH R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLI----------------------------RHWR 33
Query: 170 S-HEGVKPFRC 179
H G KP
Sbjct: 34 YYHTGEKPSGP 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 65 FTCTVCKKVFNNIKSLKTHSR-IHTGEKPFRCS 96
+ C C K F SL H R HTGEKP S
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.9 bits (63), Expect = 0.37
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
+ G +PY C C K F SL +H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 57.2 bits (139), Expect = 1e-11
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
S +GEKPF CS C K+FS + L H HA KP
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 43.7 bits (104), Expect = 8e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F C+ C+K F++ L H + H EKP S
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 42.1 bits (100), Expect = 3e-06
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 28/67 (41%)
Query: 113 AVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHE 172
+ +G KP C C AF+ KS L + HQ++H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLV----------------------------HQQTHA 34
Query: 173 GVKPFRC 179
KP
Sbjct: 35 EEKPSGP 41
Score = 38.3 bits (90), Expect = 6e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
G KPF C C+K F+ + + H H +P S
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 30.2 bits (69), Expect = 0.048
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +P+ CS C+K F L H+ +H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 57.7 bits (139), Expect = 1e-11
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRL 138
S +IH G++ +CS CG F +R LS K +C++C Q++ L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 139 HEMRH 143
E
Sbjct: 58 DEGNE 62
Score = 48.1 bits (114), Expect = 5e-08
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 160 TKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQS 219
+ + Q+ H G + +C C F R+ L+R K C C K +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRR----STLSRRK---TPMCEKCRKDSCQEAA 54
Query: 220 LNKHKLSH 227
LNK + +
Sbjct: 55 LNKDEGNE 62
Score = 45.0 bits (106), Expect = 6e-07
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 106 GILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQ 165
G +H G + C +CG F ++S L + C C ++ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 166 RHQRSHEGVKPF 177
+ + + G K
Sbjct: 57 KDEGNESGKKTS 68
Score = 41.6 bits (97), Expect = 1e-05
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 52 LNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSH 111
K + H C+ C +F + K C C K Q L+
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 112 LAVHAGVKPH 121
+G K
Sbjct: 59 EGNESGKKTS 68
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 56.4 bits (137), Expect = 2e-11
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
S +GE P+ CS CGK+F+++ L SH HAG
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.6 bits (96), Expect = 1e-05
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 28/65 (43%)
Query: 115 HAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGV 174
+G P+ C +CG AF +K QL HQR+H G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLI----------------------------SHQRTHAGE 36
Query: 175 KPFRC 179
Sbjct: 37 SGPSS 41
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
C+ C K FN L +H R H GE
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
G P+ C C K F R+ + H H G S
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 26.3 bits (59), Expect = 1.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G PY CS C K F L H+ +H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.0 bits (136), Expect = 3e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGE P+ C CGK FS++ L SH H+G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 43.6 bits (104), Expect = 8e-07
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQR 169
S + G P+ C +CG F++K QL HQ+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLV----------------------------SHQK 33
Query: 170 SHEGVKPFRC 179
+H G
Sbjct: 34 THSGQSGPSS 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
S G P+ C C K F+R+ + H H G S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
C C KVF+ L +H + H+G+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 27.8 bits (63), Expect = 0.37
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G PY C C K F L H+ +H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 54.6 bits (132), Expect = 1e-10
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 82 THSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHIC 123
+ TGEKPF C+ CG FS+ LS H H+GVKP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 45.0 bits (107), Expect = 3e-07
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 167 HQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G KPF C + C F+R + H H GV+P S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 41.5 bits (98), Expect = 5e-06
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 139 HEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCE 180
+ FAC C ++F+ +L RH+RSH GVKP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 40.0 bits (94), Expect = 2e-05
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCS 96
F CT C F+ L H R H+G KP S
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.3 bits (69), Expect = 0.050
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 195 HLNRHKGVQPYSCSH--CDKTFFDAQSLNKHKLSH 227
+ G +P++C+ C F + L++H+ SH
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 1e-10
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+GEK C CGK+F L H VH G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 44.1 bits (105), Expect = 7e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
S + +G K H C +CG F S LR+H+ H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 40.7 bits (96), Expect = 1e-05
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCS 96
TC C K F I +L+ H R+H GEK S
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
S G K C+ C K F ++ H H G + S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 28.3 bits (64), Expect = 0.29
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ G + ++C C K F +L H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 52.6 bits (127), Expect = 5e-10
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
S +G++ + C CGKSF Q+G L+ H +H G P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.5 bits (93), Expect = 3e-05
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
+ C C K F SL H RIHTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 38.7 bits (91), Expect = 4e-05
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 115 HAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G + + C++CG +F QK L LHE H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 31.0 bits (71), Expect = 0.031
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYS 206
G + + C+ C K+F ++ + H H G P S
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 27.2 bits (61), Expect = 0.62
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G + Y C C K+F SL H+ H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 52.8 bits (127), Expect = 8e-10
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 78 KSLKTHSRIHTGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVKPHICKQ--CGHAFTQK 133
+ + CS CGK++ + L +H H G KP C C F +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 134 SQLRLHEMRH 143
+L H H
Sbjct: 63 DELSRHRRTH 72
Score = 52.0 bits (125), Expect = 1e-09
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 161 KSDLQRHQRSHEGVKPFRCEY--CDKTFTRQIIMKEHLNRHKGVQPYSCSH--CDKTFFD 216
S Q ++ C + C KT+ + +K H H G +P+SCS C++ F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 217 AQSLNKHKLSH 227
+ L++H+ +H
Sbjct: 62 SDELSRHRRTH 72
Score = 52.0 bits (125), Expect = 2e-09
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 52 LNKHVEEHSTLGKFTCTV--CKKVFNNIKSLKTHSRIHTGEKPFRCSV--CGKSFSQRGI 107
+ + S + C+ C K + LK H+R HTGEKPF CS C + F++
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 108 LSSHLAVH 115
LS H H
Sbjct: 65 LSRHRRTH 72
Score = 49.7 bits (119), Expect = 1e-08
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 133 KSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDLQRHQRSHEGVKPFRCEY--CDKTFTR 188
S ++ IR C+ C + S L+ H R+H G KPF C + C++ F R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 189 QIIMKEHLNRH 199
+ H H
Sbjct: 62 SDELSRHRRTH 72
Score = 47.8 bits (114), Expect = 6e-08
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 108 LSSHLAVHAGVKPHICKQ--CGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSD 163
S + ++ HIC CG + + S L+ H H + F+C+ C +F +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 164 LQRHQRSH 171
L RH+R+H
Sbjct: 65 LSRHRRTH 72
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 53.4 bits (128), Expect = 9e-10
Identities = 18/95 (18%), Positives = 23/95 (24%), Gaps = 21/95 (22%)
Query: 86 IHTGEKPFRCSVCGKSFSQRGILSSHL-AVHAGVKPHICKQCGHAFTQKSQLRLHEMRHG 144
I + C ++FS L +H+ H G C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------------------ 60
Query: 145 NIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRC 179
C F K L H R H G K
Sbjct: 61 --YWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 52.7 bits (126), Expect = 2e-09
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 59 HSTLGKFTCTVCKKVFNNIKSLKTH-SRIHTGEKPFR--------CSVCGKSFSQRGILS 109
C + F+ + L TH + H G C GKSF + L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 110 SHLAVHAGVKPHIC 123
+H+ VH G K
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 46.9 bits (111), Expect = 2e-07
Identities = 20/76 (26%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 30 TEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGK---------FTCTVCKKVFNNIKSL 80
+ Q S C F L HV G C K F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 81 KTHSRIHTGEKPFRCS 96
H R+HTGEK S
Sbjct: 79 VNHIRVHTGEKSGPSS 94
Score = 41.1 bits (96), Expect = 2e-05
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 143 HGNIRHFACNVCPFKFTTKSDLQRH-QRSHEGVKPFRCEYC--------DKTFTRQIIMK 193
C F+T +L H H G C K+F + +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 194 EHLNRHKGVQPYSCS 208
H+ H G + S
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 36.9 bits (85), Expect = 8e-04
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 171 HEGVKPFRCEYCDKTFTRQIIMKEHLNR-HKGVQPYS--------CSHCDKTFFDAQSLN 221
E + CD+TF+ + H+ H G + C K+F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 222 KHKLSH 227
H H
Sbjct: 80 NHIRVH 85
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.3 bits (121), Expect = 3e-09
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
T K + C+ CGK+F++ L+ H +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
S K + C C K FTR + H H S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
S + K + C +CG AFT+ L H+ H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
+ C C K F I L H +IHT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 29.9 bits (68), Expect = 0.082
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 194 EHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ + Y+C+ C K F L +H+ H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 50.9 bits (121), Expect = 3e-09
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
K+ C C LK H R HT +P+ C+ C SF +G L+ H+ A K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 48.9 bits (116), Expect = 2e-08
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 93 FRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+ C CG + +L H+ H V+P+ C C +F K L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 45.5 bits (107), Expect = 3e-07
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 121 HICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
+IC++CG + S L+ H H ++R + C C F F TK +L +H +S K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 44.7 bits (105), Expect = 6e-07
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 151 CNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG 201
C C + S L++H R+H V+P+ C YC+ +F + + +H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 42.8 bits (100), Expect = 3e-06
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 177 FRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ CE C + ++K+H+ H V+PY C++C+ +F +L KH S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.2 bits (83), Expect = 6e-04
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 39 CNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
C C + +L KH+ H+ + + CT C F +L H + K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 52.2 bits (124), Expect = 5e-09
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 114 VHAGVKPHIC--KQCGHAFTQKSQLRLHEMRHGNIRHFACNV----CPFKFTTKSDLQRH 167
V +G K ++ K T + R H++ R V + +S
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
+ + + F C C F+ + +K+H+ + C C K F S H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDH 119
Score = 45.3 bits (106), Expect = 2e-06
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 6/120 (5%)
Query: 80 LKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLH 139
K + H G V + + L+ +S
Sbjct: 10 SKKYLSNHKG---IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYR 65
Query: 140 EMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
+ I F C +C F++ L++H R E C C K FT +H+ +
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 43.8 bits (102), Expect = 5e-06
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 80 LKTHSRIHTGEKPFRCSV----CGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQ 135
+ H ++ R V L + +C C F+
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 136 LRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGV 174
L+ H C VC +FT+ H +
Sbjct: 90 LKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 43.0 bits (100), Expect = 1e-05
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 41 ICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGK 100
I + DE + + +F C +C F++ SLK H R E C VC K
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKK 108
Query: 101 SFSQRGILSSHL 112
F+ H+
Sbjct: 109 EFTSTDSALDHV 120
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.1 bits (115), Expect = 2e-08
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 84 SRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
S +GEKP+ C+ C ++FS L H +H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 35.8 bits (83), Expect = 5e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 113 AVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+ +G KP+ C +C F+ ++L H+ H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 34.6 bits (80), Expect = 0.001
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRC 95
++C CK+ F++ L H ++HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.9 bits (73), Expect = 0.013
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G +PYSC+ C +TF D L +H+ H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 31.1 bits (71), Expect = 0.023
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 169 RSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
G KP+ C C +TF+ + +H H S
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 46.9 bits (112), Expect = 4e-08
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 83 HSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+R TG KPF+C C +SFS+ S HLA+H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSR----SDHLALH 30
Score = 38.9 bits (91), Expect = 4e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
R G+KPF+C CD++F+R + H RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 111 HLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
G+KP C C +F++ L LH RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.025
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
G++P+ C CD++F + L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.5 bits (59), Expect = 0.99
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 139 HEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
I+ F C C F+ L H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 24.6 bits (54), Expect = 5.1
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 55 HVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIH 87
+ + F C C + F+ L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.1 bits (116), Expect = 5e-08
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCS 208
+ C +C K ++ + H+R C YC F + +EH ++ + + +C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKK-LTCL 73
Query: 209 HCDKTFFDAQSLNKHKLS 226
C +TF + S+ +H++
Sbjct: 74 ECMRTFKSSFSIWRHQVE 91
Score = 46.8 bits (110), Expect = 3e-07
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 81 KTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHE 140
+ + ++ ++C +C S SH + C C F + HE
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHE 62
Query: 141 MRHGNIRHFACNVCPFKFTTKSDLQRHQRS 170
+ + C C F + + RHQ
Sbjct: 63 SKC-EYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 39.9 bits (92), Expect = 9e-05
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 117 GVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKP 176
+ + C+ C + + HE N C C +F + Q H+ E K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHESKCEY-KK 69
Query: 177 FRCEYCDKTFTRQIIMKEH 195
C C +TF + H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 37.6 bits (86), Expect = 5e-04
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 34 QKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPF 93
++ C +C+ + H C C F + + + H K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHES-KCEYKKL 70
Query: 94 RCSVCGKSFSQRGILSSH 111
C C ++F + H
Sbjct: 71 TCLECMRTFKSSFSIWRH 88
Score = 35.3 bits (80), Expect = 0.004
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 167 HQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLS 226
E + ++C C+ + + H + C +C FF + +H+
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESK 64
Query: 227 HK 228
+
Sbjct: 65 CE 66
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 46.8 bits (111), Expect = 8e-08
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 82 THSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPH 121
+ GE PF+CS C + F+QR L H HA
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 39.5 bits (92), Expect = 3e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 166 RHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG 201
S G PF+C CD+ FT++ + +H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 37.5 bits (87), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
S + AG P C +C FTQ++ L HE H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 32.9 bits (75), Expect = 0.006
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 195 HLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADP 233
+ G P+ CS CD+ F L +H+ +H + P
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 31.8 bits (72), Expect = 0.015
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 54 KHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKP 92
+ F C+ C +VF L H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.0 bits (101), Expect = 2e-06
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVC 98
+ C +C K+F ++ L H H+GEKP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.5 bits (92), Expect = 3e-05
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 168 QRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHC 210
S K CE C K F + H H G +PYS
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.5 bits (92), Expect = 3e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 85 RIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQC 126
K C +CGK F L+ H H+G KP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.0 bits (88), Expect = 1e-04
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYC 182
+ AC +C F L RH+ SH G KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 2e-04
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 115 HAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVC 154
K C+ CG F L H++ H + ++
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.008
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 198 RHKGVQPYSCSHCDKTFFDAQSLNKHKLSH 227
+ + +C C K F D LN+HKLSH
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 45.2 bits (106), Expect = 1e-05
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+ + + + ++C VC L +H+A H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 42.5 bits (99), Expect = 9e-05
Identities = 7/54 (12%), Positives = 10/54 (18%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHG 144
S+ + + C C L H HG
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 42.1 bits (98), Expect = 1e-04
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
+ I + ++ + + C+VC + DL H SH
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.6 bits (81), Expect = 0.012
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 59 HSTLGKFTCTVCKKVFNNIKSLKTHSRIH 87
S+ + C VC V + L H H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.3 bits (75), Expect = 0.078
Identities = 11/75 (14%), Positives = 17/75 (22%), Gaps = 6/75 (8%)
Query: 159 TTKSDLQRHQRSHEG------VKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDK 212
+ +EG + E ++ Y C C
Sbjct: 129 NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSA 188
Query: 213 TFFDAQSLNKHKLSH 227
F L+ H SH
Sbjct: 189 VLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.27
Identities = 4/51 (7%), Positives = 11/51 (21%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
+ + ++C C + + H+ H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.7 bits (79), Expect = 0.005
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 162 SDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLN-RHKGVQ---PYSCSHCDKTFFDA 217
+Q++ + + C+YC + H++ H V Y C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 218 QSLNKHKLSHKTSADPIS 235
+L++H L + +
Sbjct: 64 DALSEHNLKYHPGEENFK 81
Score = 32.8 bits (74), Expect = 0.024
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 110 SHLAVHAGVKPHICKQCGHAFTQKSQLRLH-EMRHGNIRH---FACNVCPFKFTTKSDLQ 165
+ + CK C + H + H N+ + C C F L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 166 RHQ-RSHEGVKPFRC 179
H + H G + F+
Sbjct: 68 EHNLKYHPGEENFKL 82
Score = 31.3 bits (70), Expect = 0.073
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 134 SQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRS-HEGVK---PFRCEYCDKTFTRQ 189
++ + C C F+ + H S H V + C C+ R
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 190 IIMKEHLNRH 199
+ EH ++
Sbjct: 64 DALSEHNLKY 73
Score = 29.0 bits (64), Expect = 0.47
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 54 KHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRI-HTG---EKPFRCSVCGKSFSQRGILS 109
+ + G + C C ++ H H + C C + LS
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 110 SHLA-VHAG 117
H H G
Sbjct: 68 EHNLKYHPG 76
Score = 28.6 bits (63), Expect = 0.81
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 79 SLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHL-AVHAGVK---PHICKQCGHAFTQKS 134
+ + E + C C + + H+ + H V ++C +C +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 135 QLRLHEMRH 143
L H +++
Sbjct: 65 ALSEHNLKY 73
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 33.4 bits (75), Expect = 0.005
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+GEKP+ C VCG F ++ +S H+ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.47
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 143 HGNIRHFACNVCPFKFTTKSDLQRHQRSHEG 173
+ ++C VC +F K + H RSH+G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.2 bits (59), Expect = 0.79
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 171 HEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG 201
G KP+ C C F R+ M H+ H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 24.1 bits (51), Expect = 9.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 199 HKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTS 230
G +PYSC C F ++ H SH S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 32.7 bits (75), Expect = 0.005
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRH 199
+ F CE C + F RQ EHL RH
Sbjct: 1 RSFVCEVCTRAFARQ----EHLKRH 21
Score = 32.7 bits (75), Expect = 0.006
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
F C VC + F + LK H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.038
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
R F C VC F + L+RH RSH K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.1 bits (58), Expect = 1.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
+ F C VC ++F+++ L H H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 3.9
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
+ +C+ C AF ++ L+ H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 32.6 bits (75), Expect = 0.006
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 147 RHFACNV--CPFKFTTKSDLQRHQRSHEGVK 175
R F C C +FT +LQRH+R+H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.1 bits (66), Expect = 0.11
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 91 KPFRCSV--CGKSFSQRGILSSHLAVHAGVK 119
+PF C+ CGK F++ L H H G K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.3 bits (64), Expect = 0.18
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 65 FTCTV--CKKVFNNIKSLKTHSRIHTGEK 91
F CT C K F L+ H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.2 bits (61), Expect = 0.45
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 175 KPFRC--EYCDKTFTRQIIMKEHLNRHK 200
+PF C YC K FTR + L RHK
Sbjct: 1 RPFMCTWSYCGKRFTR----SDELQRHK 24
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.011
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 60 STLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
S+ FTC C KVF SL+ H RIHT EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.4 bits (57), Expect = 1.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 170 SHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKG 201
S K F CEYC+K F + ++ HL H
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 24.8 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
K F C C K F + L +HL +H K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 32.1 bits (72), Expect = 0.021
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 116 AGVKPHICKQCGHAFTQKSQLRLHEMRHG 144
AG+ P C CG FT ++LR HE +HG
Sbjct: 11 AGILP--CGLCGKVFTDANRLRQHEAQHG 37
Score = 27.9 bits (61), Expect = 0.78
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHKTSA 231
C C K F DA L +H+ H ++
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQHGVTS 40
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.6 bits (73), Expect = 0.026
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 63 GKFTCTVCKKVF-NNIKSLKTHSRI-HTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
G+ C C V + LK H + + +C C K F + L+ H KP
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 32.6 bits (73), Expect = 0.030
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 168 QRSHEGVKPFRCEYCDKTFTRQII-MKEHLNR-HKGVQPYSCSHCDKTFFDAQSLNKHKL 225
QR+ C C+ + ++ +K+H+ K C HC K F LN H +
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 226 SHKTS 230
+ ++
Sbjct: 76 AEHSA 80
Score = 32.2 bits (72), Expect = 0.032
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 33 QQKSLACNICSMVFCDEIV-LNKHVEE-HSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGE 90
++ C C++V +V L KH+E C C+K F + L H+
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 91 KP 92
KP
Sbjct: 81 KP 82
Score = 30.7 bits (68), Expect = 0.11
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 148 HFACNVC-PFKFTTKSDLQRHQRS-HEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQP 204
C C T L++H + +C++C K F + + H +P
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 30.5 bits (68), Expect = 0.032
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ C C++ F + +L+ H RIHTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.3 bits (65), Expect = 0.096
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
KP+ C C + F+ G L H+ +H G K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.0 bits (64), Expect = 0.14
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 202 VQPYSCSHCDKTFFDAQSLNKHKLSH 227
++PY C HC + F D +L +H H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 26.6 bits (58), Expect = 0.74
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRH 143
+KP++C C F L+ H H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 25.5 bits (55), Expect = 2.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
++ + C C +F LQRH R H G K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.9 bits (51), Expect = 7.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 174 VKPFRCEYCDKTFTRQIIMKEHLNRHKG 201
+KP+ C +C + F ++ H+ H G
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTG 28
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.046
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 30 TEAQQKSLACNICSMVFCDEIVLNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTG 89
E +Q LA ++ + + L + K +++ H + G
Sbjct: 149 EEREQNLLAFQHSERIY---FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARG 205
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVH 115
EK + + L + +
Sbjct: 206 EKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 32.9 bits (74), Expect = 0.060
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 157 KFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDK 212
+ + S H+ G K + E ++ ++ ++ S K
Sbjct: 189 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQGK 237
Score = 30.6 bits (68), Expect = 0.35
Identities = 5/49 (10%), Positives = 9/49 (18%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
+ SQ +H + DL+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 29.0 bits (64), Expect = 1.2
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 181 YCDKTFTRQIIMKE---HLNRHKGVQPYSCSHCDKTFFDAQSLNKH 223
Y + R M + H N +G + ++ + + L
Sbjct: 182 YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.070
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVHA 116
EK F+C+ C K+FS L+ H +H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 26.3 bits (57), Expect = 1.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 170 SHEGVKPFRCEYCDKTFTRQIIMKEHLNRH 199
S + K F+C C+KTF+ + +H H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.0 bits (51), Expect = 9.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHT 88
F C C+K F+ K L H RIHT
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHT 36
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 33.0 bits (76), Expect = 0.072
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 53 NKHVEE-HSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSH 111
N V H + + C C K+ K + + + P C CG GI
Sbjct: 142 NTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CG------GIF--- 191
Query: 112 LAVHAGVKPHI 122
KP+I
Sbjct: 192 -------KPNI 195
Score = 30.7 bits (70), Expect = 0.36
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 137 RLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCE 180
++ + HGN+ C C + + P C
Sbjct: 144 KVISL-HGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP 186
Score = 28.0 bits (63), Expect = 3.1
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 94 RCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGH 128
C C K I+ + P C CG
Sbjct: 156 VCCTCNKIVKLNKIMLQKTSHFMHQLPPEC-PCGG 189
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.081
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 143 HGNIRHFACNVCPFKFTTKSDLQRHQRSH 171
R F C +C FTTK++ RH + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 29.7 bits (66), Expect = 0.081
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 87 HTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
+G++PF C +C +F+ + + HL VH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 26.6 bits (58), Expect = 1.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 115 HAGVKPHICKQCGHAFTQKSQLRLHEMRH 143
+G +P +C+ C AFT K+ H H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 32.0 bits (73), Expect = 0.100
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 177 FRCEYCDKTFTRQIIMKEHLNRHK 200
RCEYC+ IM + L +
Sbjct: 144 MRCEYCETIIDENEIMSQILGANN 167
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.4 bits (65), Expect = 0.10
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAG 117
+P+ CSVCGK FS + + +H VH G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 146 IRHFACNVCPFKFTTKSDLQRHQRSHEG 173
+R ++C+VC +F+ K ++ H R H G
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.9 bits (56), Expect = 1.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 65 FTCTVCKKVFNNIKSLKTHSRIHTG 89
++C+VC K F+ ++TH R+HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.0 bits (51), Expect = 6.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRH 143
++P+ C CG F+ K Q+ H H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.9 bits (65), Expect = 0.14
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 64 KFTCTV--CKKVFNNIKSLKTHSRIHTGEK 91
+ C + C KV+ L+ H R HTGE+
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.5 bits (59), Expect = 1.0
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 88 TGEKPFRCSV--CGKSFSQRGILSSHLAVHAGVK 119
+K C + CGK + + L +HL H G +
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 23.9 bits (52), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 119 KPHIC--KQCGHAFTQKSQLRLHEMRH 143
K HIC + CG + + S LR H H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 23.9 bits (52), Expect = 9.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 175 KPFRCEY--CDKTFTRQIIMKEHLNRHKG 201
K C C K + + ++ HL H G
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.9 bits (65), Expect = 0.14
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 205 YSCSHCDKTFFDAQSLNKHKLSHK 228
Y+CS C + F AQ+L H H+
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHR 30
Score = 25.5 bits (56), Expect = 2.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 147 RHFACNVCPFKFTTKSDLQRHQRSH 171
R + C+ C +F + L H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 25.1 bits (55), Expect = 3.8
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHK 200
+ + C +C + F + H+N H+
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHR 30
Score = 24.7 bits (54), Expect = 4.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+TC+ CK+ F + ++L H +H ++
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.2 bits (67), Expect = 0.16
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 162 SDLQRHQRSHEGVKPFRCEYCDKTFTRQII-MKEHLNRHKGVQPYSCSHCDKTFFDAQSL 220
S ++ C C + I +K+H+ K + ++C HC K +
Sbjct: 20 SLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGM 78
Query: 221 NKHKLS 226
H ++
Sbjct: 79 KYHVMA 84
Score = 29.8 bits (66), Expect = 0.21
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 63 GKFTCTVCKKV-FNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKP 120
G +C C+ V I+ LK H ++ F C CGK + H+ + P
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 29.1 bits (64), Expect = 0.39
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 33 QQKSLACNICSMVFCDEIV-LNKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEK 91
+ S++C C V I L KH+E FTC C K ++ +K H +
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 92 PF 93
P
Sbjct: 90 PS 91
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (64), Expect = 0.18
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
+ EK +C CG+ F Q L H +H G K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 0.38
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
K H C++CG F Q L H++ H
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
Score = 24.4 bits (52), Expect = 8.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 203 QPYSCSHCDKTFFDAQSLNKHKLSH 227
+ + C C + FF SL +H++ H
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 30.1 bits (68), Expect = 0.19
Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 19/74 (25%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ C +CK + + CG S+ I + L H C
Sbjct: 13 ELLCLICKDIMTD---------------AVVIPCCGNSYCDECI-RTALLES---DEHTC 53
Query: 124 KQCGHAFTQKSQLR 137
C L
Sbjct: 54 PTCHQNDVSPDALI 67
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 28.6 bits (63), Expect = 0.20
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 147 RHFACNVCPFKFTTK-SDLQRHQRSHEGVK 175
R C C F F SDLQRH +HEGVK
Sbjct: 8 RAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
Score = 24.0 bits (51), Expect = 8.2
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 170 SHEGVKPFRCEYCDKTFTRQ-IIMKEHLNRHKGVQ 203
S + +C YCD F + ++ H+ H+GV+
Sbjct: 3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.20
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLA-VHAG 117
K + C +C ++F++R +L H +H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 25.2 bits (55), Expect = 2.8
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNR-HKG 201
K + C C++ FTR+ ++ H + H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 29.4 bits (66), Expect = 0.27
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 177 FRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTF 214
F C C ++ + + K H++ + + SC C K F
Sbjct: 11 FTCNACGESVKKIQVEK-HVSNCRNCECLSCIDCGKDF 47
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 31.2 bits (71), Expect = 0.27
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 56 VEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
+E H + C C KV+ + + +C VCG
Sbjct: 128 IEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFV-KCDVCG 170
Score = 26.6 bits (59), Expect = 8.5
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 94 RCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCG 127
C CGK + + S C CG
Sbjct: 138 HCIGCGKVYPPQVFKSKLAEHPIKDFVK-CDVCG 170
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 0.27
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 89 GEKPFRCSVCGKSFSQRGILSSHLAVHAG 117
+ C CGK F +L H A+HAG
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAG 37
Score = 24.5 bits (52), Expect = 6.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 176 PFRCEYCDKTFTRQIIMKEHLNRHKG 201
C+ C K F ++ EH H G
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAG 37
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 30.4 bits (69), Expect = 0.31
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 177 FRCEYCDKTFTRQIIMK 193
+C+YC+K F+ +++
Sbjct: 136 LKCKYCEKEFSHNVVLA 152
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase,
mixed alpha/ protein, N-terminal rossmann-fold like;
2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Length = 280
Score = 31.0 bits (71), Expect = 0.32
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 126 CGHAFTQKSQLRLHEMRHGNIRHFACN 152
G T LR++E+ R A +
Sbjct: 41 TGLGITLHKPLRMYEVDLCGFRAIATS 67
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 30.0 bits (68), Expect = 0.35
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 177 FRCEYCDKTFTRQIIMK 193
+C+YC+KTF++ I+ +
Sbjct: 135 LKCKYCEKTFSKDIVTE 151
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.5 bits (65), Expect = 0.42
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEM--RHG-NIRHFACNVCPFKFTTKSDLQRHQRSHEGV- 174
CK C +SQ H +H +R + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 175 -KPFRCEYCDKTFTRQIIMKEHLNRHK 200
+ C C+ TF+ ++ + H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYIGKT 117
Score = 26.8 bits (58), Expect = 4.5
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 26 MRKETEAQQKSLACNICSMVFCDEIVLNKHVE--EHST-LGKFTCTVCKKVFNNIKSLKT 82
+ +E C +CS V E H + +H+ + ++ + K K
Sbjct: 22 LIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKA 81
Query: 83 HSRIHTGE--KPFRCSVCGKSFSQRGILSSHLA 113
+ + C VC +FS + SH
Sbjct: 82 APAEISDGEDRSKCCPVCNMTFSSPVVAESHYI 114
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 27.4 bits (60), Expect = 0.45
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
KP +C +CGK+F+Q L +H+ H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.7 bits (58), Expect = 0.83
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 67 CTVCKKVFNNIKSLKTHSRIHTGEK 91
C +C K F SL H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.1 bits (54), Expect = 3.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP C CG AFTQ S L H +H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 30.7 bits (69), Expect = 0.46
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 56 VEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
+E H + C C KV+ + + +C VCG
Sbjct: 136 IEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFV-KCDVCG 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.47
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 212 KTFFDAQSLNKHKLSHKTSADPISSAKGSK-----LFGGIG 247
K + A+ + K K+++ + +FGG G
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 0.51
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 63 GKFTCTV--CKKVFNNIKSLKTHSRIHTGEK 91
F C C K F ++++H + H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.7 bits (59), Expect = 0.99
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 175 KPFRCEY--CDKTFTRQIIMKEHLNRH 199
K F C + C KTF R+ ++ H+ H
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 24.8 bits (54), Expect = 5.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 90 EKPFRCSV--CGKSFSQRGILSSHLAVHAG 117
+K F C C K+F +R + SH+ H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 30.0 bits (68), Expect = 0.65
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 56 VEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
VE H T TCTVC++ F + P RC VC
Sbjct: 131 VEAHGTFASATCTVCQRPFPGEDIRA---DVMADRVP-RCPVCT 170
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.0 bits (59), Expect = 0.68
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP++C++CG F Q SQL H H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.3 bits (52), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLAVH 115
KP+ C CGK F Q L++H+ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 29.4 bits (67), Expect = 0.81
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 56 VEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
+E H + ++ C C+K + +K ++ + + P C C
Sbjct: 113 IELHGNVEEYYCVRCEKKYTVEDVIK---KLESSDVP-LCDDCN 152
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 0.84
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLA 113
+KP+ C +CGK + R LS H A
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 29.4 bits (65), Expect = 0.85
Identities = 18/147 (12%), Positives = 37/147 (25%), Gaps = 13/147 (8%)
Query: 89 GEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHICK-QCGHAFTQKSQLRLHEMRHGNIR 147
P V K + H V+ + + A+ +S + ++
Sbjct: 73 CGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTI 132
Query: 148 HFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSC 207
A + + + C C FT ++H H C
Sbjct: 133 LKAKGHTFPELREADAMFTADTAPNWADGRVCHRCRVEFT--FTNRKH---H-------C 180
Query: 208 SHCDKTFFDAQSLNKHKLSHKTSADPI 234
+C + F + + L +
Sbjct: 181 RNCGQVFCGQCTAKQCPLPKYGIEKEV 207
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.9 bits (64), Expect = 0.92
Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 9/134 (6%)
Query: 64 KFTCTVCKKVFNNIKSL-------KTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHA 116
K+ C +C K + +C V + + + + A
Sbjct: 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77
Query: 117 -GVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVK 175
C G + + H C C F K + H +
Sbjct: 78 ILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQ-KFHINIHILKDCPRR 136
Query: 176 PFRCEYCDKTFTRQ 189
C+ C + +
Sbjct: 137 QVSCDNCAASMAFE 150
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 29.5 bits (67), Expect = 0.98
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 53 NKHVEE-HSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
++ V E H ++ K C C + ++ + ++ + GE P RC CG
Sbjct: 111 SRRVLELHGSMDKLDCLDCHETYDWSEFVE---DFNKGEIP-RCRKCG 154
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 28.9 bits (65), Expect = 1.2
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 188 RQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQSLNKHKLSHKTSADPISSAKGSKLFG 244
R+ + + + + V+ H + F+ + + + ++ G K+FG
Sbjct: 11 RENLYFQGMWDQRLVRLALLQHL-RAFYGIKVKGVRGQCDRRRHETAATEIGGKIFG 66
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.4 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 144 GNIRHFACNVCPFKFTTKSDLQRHQRSHEGV 174
N + CNVC +F+T S L H RS
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDHRD 142
Score = 29.4 bits (65), Expect = 1.5
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 119 KPHICKQCGHAFTQKSQLRLHE 140
++C C F+ S L H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHL 136
Score = 29.0 bits (64), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 91 KPFRCSVCGKSFSQRGILSSHLA 113
+ C+VC FS LS HL
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLR 137
Score = 28.2 bits (62), Expect = 3.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSR 85
+ C VC F+ + +L H R
Sbjct: 116 SYVCNVCNARFSTMSALSEHLR 137
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.1 bits (64), Expect = 1.6
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 69 VCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHL 112
V + ++ + + + K C C + F + SHL
Sbjct: 269 VENLIKSDFEHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHL 312
Score = 27.5 bits (60), Expect = 4.9
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLN--RHK 200
K C +C + F + + HL HK
Sbjct: 291 KGIYCPFCSRWFKTSSVFESHLVGKIHK 318
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 28.7 bits (65), Expect = 1.6
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 24/71 (33%)
Query: 53 NKHVEE-HSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSH 111
+++V H +L CT C F + K +C CG +L
Sbjct: 109 SRNVIHLHGSLRVVRCTSCNNSFEVESAPKI-------PPLPKCDKCG------SLL--- 152
Query: 112 LAVHAGVKPHI 122
+P +
Sbjct: 153 -------RPGV 156
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 1.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 88 TGEKPFRCSVCGKSFSQRGILSSHLAVHAGVK 119
+ KP++C C + + + L+ HL H G K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 3.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRHKG 201
KP++C C + + HL +H G
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 24.4 bits (52), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP+ C QC +A K+ L +H +H
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKH 32
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.5 bits (63), Expect = 1.8
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 175 KPFRCEYCDKTFTRQII-MKEHLNRH 199
+ +C C +TF R +K HL
Sbjct: 168 EDLKCWRCGETFGRHFTKLKAHLQEE 193
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 27.2 bits (60), Expect = 1.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 118 VKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNV--CPFKFTTKSDL 164
KP K CGH + + + +R+ E R + C C KSDL
Sbjct: 18 KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.7 bits (61), Expect = 1.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 57 EEHSTLGKFTCTVCKKVFNNIKSLKTHSR 85
+ G C C + F + +LKTH R
Sbjct: 43 PDLPGGGLHRCLACARYFIDSTNLKTHFR 71
Score = 27.3 bits (60), Expect = 2.3
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 205 YSCSHCDKTFFDAQSLNKHKLS--HK 228
+ C C + F D+ +L H S HK
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHK 76
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 27.7 bits (62), Expect = 2.2
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 177 FRCEYCDKTFTRQII 191
RC YC+K I
Sbjct: 134 IRCYYCEKFLNEVIF 148
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.5 bits (55), Expect = 2.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHE 172
+ C +C F KS L RHQR H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.3 bits (55), Expect = 2.6
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVKPFR 178
FAC CP +F L +H HE + R
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 113
Score = 27.0 bits (59), Expect = 3.0
Identities = 10/96 (10%), Positives = 21/96 (21%), Gaps = 13/96 (13%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYC 182
C +C + L E + + AC C + +
Sbjct: 7 CIECN------NMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNV------- 53
Query: 183 DKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQ 218
+ T + + C + F+
Sbjct: 54 ENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTH 89
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 11/79 (13%)
Query: 56 VEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVH 115
V+ H + TC C + +I E P C C K + + V
Sbjct: 153 VQCHGSFATATCVTCHWNLPGERIFN---KIRNLELP-LCPYCYKKRREYFPEGYNNKVG 208
Query: 116 AGV-------KPHICKQCG 127
+P
Sbjct: 209 VAASQGSMSERPPYILNSY 227
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 27.9 bits (63), Expect = 3.0
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 24/71 (33%)
Query: 53 NKHVEE-HSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSH 111
N +V H L K C+ +V + + E C L
Sbjct: 101 NTNVIHMHGELLKVRCSQSGQVLDWTGDVTP-------EDKCHCCQFP------APL--- 144
Query: 112 LAVHAGVKPHI 122
+PH+
Sbjct: 145 -------RPHV 148
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.1 bits (57), Expect = 3.1
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 162 SDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSHCDK 212
S H+ + ++ C++CD + +KEH + + G + C +C +
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHED-YCGARTELCGNCGR 51
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 25.9 bits (57), Expect = 3.9
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 19/74 (25%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGILSSHLAVHAGVKPHIC 123
+ C +CK + + CG S+ + + L H C
Sbjct: 15 ELLCLICKDIMTD---------------AVVIPCCGNSYC-DECIRTALLES---DEHTC 55
Query: 124 KQCGHAFTQKSQLR 137
C L
Sbjct: 56 PTCHQNDVSPDALS 69
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 4.1
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 64 KFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCGKSFSQRGI 107
TC CK I R G+ C++CG S + +
Sbjct: 21 VLTCPECKVYPPKI-----VERFSEGD--VVCALCGLVLSDKLV 57
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.0 bits (56), Expect = 4.5
Identities = 8/23 (34%), Positives = 8/23 (34%)
Query: 205 YSCSHCDKTFFDAQSLNKHKLSH 227
Y C HCD L H H
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIH 48
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 4.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 175 KPFRCEYCDKTFTRQIIMKEHLNRH 199
KPF+C C+ + +K H+NRH
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
Score = 24.5 bits (52), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 119 KPHICKQCGHAFTQKSQLRLHEMRH 143
KP C C +A KS L+ H RH
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.5 bits (53), Expect = 5.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 149 FACNVCPFKFTTKSDLQRHQRSHEGVK 175
FAC CP +F L H HE K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1
PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I
1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I*
1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Length = 122
Score = 26.4 bits (57), Expect = 5.6
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 13/97 (13%)
Query: 123 CKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKFTTKSDLQRHQRSHEGVKPFRCEYC 182
C+ C + L E + N F C C + S L +
Sbjct: 7 CRDCN------NMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIG------- 53
Query: 183 DKTFTRQIIMKEHLNRHKGVQPYSCSHCDKTFFDAQS 219
+ Q I + + C + FF +Q
Sbjct: 54 ETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQ 90
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 25.9 bits (57), Expect = 5.7
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 99 GKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNVCPFKF 158
G S Q ++ + AG + +C C + L + H F C C
Sbjct: 4 GSSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWH--PEEFNCAHCKNTM 61
Query: 159 TTKS 162
Sbjct: 62 AYIG 65
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 26.9 bits (60), Expect = 5.9
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 56 VEEHSTLGKFTCTVCKKVFNN---IKSLKTHS--RIHTGEKPFRCSVCG 99
E H + C CK + + ++ + R+ T K C
Sbjct: 130 AELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 6.9
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 99 GKSFSQRGILSSHLAVHAGVKPHICKQCGH---------AFTQKSQLRLHEMRHGNIRHF 149
+++ G + + L KP+IC F K + L ++ ++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 150 A 150
A
Sbjct: 571 A 571
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 26.6 bits (58), Expect = 7.1
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 13/47 (27%)
Query: 53 NKHVEEHSTLGKFTCTVCKKVFNNIKSLKTHSRIHTGEKPFRCSVCG 99
++ C +C IH GE +C +C
Sbjct: 160 YNDIDAPDDDKFHLCPIC-------------GYIHKGEDFEKCPICF 193
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.2 bits (52), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 175 KPFRCEY--CDKTFTRQIIMKEHLNRH 199
+P+ C++ CDK F R + H H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 90 EKPFRCSVCGKSFSQRGILSSHLAVH 115
K C +CGK F +G L SH +H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 26.3 bits (58), Expect = 9.7
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 56 VEEHSTLGKFTCTVCKKVFNN---IKSLKTHS--RIHTGEKPFRCSVCG 99
E H + C CK + + ++ + R+ T K C
Sbjct: 130 AELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta
barrel, central finger loop, oxidoreductase; 1.75A
{Lactobacillus leichmannii} SCOP: c.7.1.4
Length = 739
Score = 26.7 bits (57), Expect = 9.7
Identities = 10/116 (8%), Positives = 23/116 (19%), Gaps = 9/116 (7%)
Query: 94 RCSVCGKSFSQRGILSSHLAVHAGVKPHICKQCGHAFTQKSQLRLHEMRHGNIRHFACNV 153
S+ + G ++ G+ H + L +
Sbjct: 539 NESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQDSDPLLPALK--ACGYRTEA 596
Query: 154 CPFKFTTKSDLQRHQRSHEGVKPFRCEYCDKTFTRQIIMKEHLNRHKGVQPYSCSH 209
+ T + F + + E +Q Y +
Sbjct: 597 DIYTENTTCVEFPIKAVGADNPNFAS-------AGTVSIAEQFATQAFLQTYWSDN 645
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.418
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,433,839
Number of extensions: 186361
Number of successful extensions: 2432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1923
Number of HSP's successfully gapped: 1006
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.0 bits)