BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy229
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G KE+V +++ GA + KD DG TPLH AA+N V + L+ GA+VN S
Sbjct: 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G KE+V +++ GA + KD DG TPLH AA+N V + L+ GA+VN
Sbjct: 48 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G+K+ V ++ GA + D DG TPLH AA+N V + L+ GA+VN
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
G KE+V +++ GA + D DG TPL +A ++ + V + L G
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
G KE+V +L+ GA KD DG TPLH+AA+N V + LL GA+ N S
Sbjct: 81 GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G KE+V +L+ GA KD DG TPLH+AA+N V + LL GA+ N
Sbjct: 48 GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 98
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G+K+ V +L GA + D DG TPLH+AA+N V + LL GA+ N
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
G KE+V +L+ GA D DG TPL +A ++ + V + L
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G KE+V +L+ GA KD DG TPLH AA+N + + LL GA+ N S
Sbjct: 81 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G KE+V +L+ GA KD DG TPLH AA+N + + LL GA+ N
Sbjct: 48 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 80 IQVAK-GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
I+ A+ G+K+ V +L GA D DG TPLH AA+N + + LL GA+ N
Sbjct: 9 IEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
G KE+V +L+ GA D DG TPL +A ++ + + + L G
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G E V +L+ GA + + DGNTPLH+AA+N + + LL GA+VN
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G E+V +LA GA + + DGNTP H+A +N + + L GA+VN
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
DGNTPLH AA+N + LL GA+VN
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNA 37
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+G KE+V +++ GA + KD DG TPLH AA+ + + L+ GA+VN S
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+G KE+V +++ GA + KD DG TPLH AA+ + + L+ GA+VN
Sbjct: 47 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G+K+ V ++ GA + D DG TPLH AA+ + + L+ GA+VN
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
+G KE+V +++ GA + D DG TPL +A ++ + + + L
Sbjct: 113 EGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA+VN
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+G TPLH+AA+N + V + LL GA+VN
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK 31
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA+VN
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA+VN
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA
Sbjct: 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+G TPLH+AA+N + V + LL GA+VN
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 32
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
E+V +L AGA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L AGA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 82 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
E+V +L AGA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L AGA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 82 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
E+V +L AGA + +D G TP +A N + + + L
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
E+V +L AGA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L AGA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 94 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + +D DG TPLH+AA N + + + LL +GA+VN
Sbjct: 58 GHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + +D G TPLH+AA + + + LL GA+VN
Sbjct: 94 EIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + D G+TPLH+AA + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G + V ++A GA + D DG TPLH+AA N + + + LL GA+VN S +
Sbjct: 25 GQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL 78
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A G E+V +L GA + D DG+TPLH+AA+ + + + LL GA+VN
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ + G E+V +L GA + D G TPLH+AA + + + LL GA+VN
Sbjct: 53 LAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + KD +G+TPLH+AA+N + V + LL GA+VN
Sbjct: 17 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + KD +G TPLH+AA + + + LL +GA+VN
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G E+V +L GA + D G+TPLH+AA + + + LL GA+VN
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + D G TPLH+AA + + + LL GA+VN
Sbjct: 25 GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + KD DG TPLH+AA+ + + + LL GA+VN
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGAEVN----VSQIPYF 141
D +GNTPL+IA NN + + +AL+ GA++N +S PY
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL 77
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + KD +G TPLH+AA + + + + LL +GA+VN
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
G E+V +L GA + D G TPLH+AA N + + + LL GA+VN F
Sbjct: 58 GHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGF 114
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + D G+TPLH+AA+ + + + LL +GA+VN
Sbjct: 25 GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
A G + V ++A GA + D +G TPLH+AA N + + + LL GA+VN S
Sbjct: 15 AAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A G E+V +L GA + D G TPLH+AA + + + + LL GA+VN
Sbjct: 45 LAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + D G TPLH+AA + + + + LL GA+VN
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + D G TPLH+AA++ + + + LL +GA+VN
Sbjct: 90 RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
V G E++ +L A + D G TPLH+AA + + + LL +GA+VN
Sbjct: 55 VNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + D G TPLH+ N + + + LL + A+VN S
Sbjct: 25 GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
E+V +L GA + KD G TPLH+AA+ + + + LL GA+VN S F
Sbjct: 61 EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGF 114
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + D G TPLH+AA+ + + + LL GA+VN
Sbjct: 90 RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + +D G TPLH+AA + + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 48 HLRAYTGYGINTLLWYMQH----EPQTVLQYTHAATIQVAK--GDKELVLSILAAGAALE 101
HL AY+G+ + + ++H + V YT + +A G E+V +L GA +
Sbjct: 52 HLAAYSGH-LEIVEVLLKHGADVDASDVFGYT---PLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 102 LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
D DG TPLH+AA+ + + + LL GA+VN
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI-PYFP 142
G + V ++A GA + D G TPLH+AA + + + + LL GA+V+ S + Y P
Sbjct: 25 GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP 83
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + D DG TPLH+AAQ + + + LL +GA+VN
Sbjct: 25 GQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + +D G TPLH+AA + + + LL GA+VN
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
G + V ++A GA + KD +G+TPLH+AA+N + V + LL GA+V
Sbjct: 35 GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + D GNTPLH+AA + + + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + D DG+TPLH+AA + + + LL GA+VN
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G + V ++A GA + D G TPLH+AA+ + + + LL GA+VN S I
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + D G TPLH+AA + + + LL +GA+VN
Sbjct: 57 RGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
E+V +L GA + D G+TPLH+AA+ + + + LL +GA+VN
Sbjct: 61 EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + D G+TPLH+AA + + + LL +GA+VN
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + +D G+TPLH+AA+ + + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+ A G E+V +L GA + D +G TPLH+AA + + + LL +GA+VN
Sbjct: 41 MAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + KD G TPL++AA + + + LL GA+VN
Sbjct: 79 GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA D G TPLH+AA + + + LL GA+VN
Sbjct: 13 GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L G + KD G +PLHIAA + +ALLG GA+VN
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
AKG+ +++ +L A+ ++D +GNTPLH+A V + L+ GA +
Sbjct: 148 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
I + G E+V ++L GA + + +G TPLH AA N + LL GA
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
V G E+V ++ G + D DG TPLH AA N+V V + L+ GA V
Sbjct: 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L G + KD G +PLHIAA + +ALLG GA+VN
Sbjct: 52 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
AKG+ +++ +L A+ ++D +GNTPLH+A V + L+ GA +
Sbjct: 149 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
I + G E+V ++L GA + + +G TPLH AA N + LL GA
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
V G E+V ++ G + D DG TPLH AA N+V V + L+ GA V
Sbjct: 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G + V ++A GA + D G TPLH+AA+ + + + LL GA+VN I
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + +D G TPLH+AA + + + LL +GA+VN
Sbjct: 57 RGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + +D G TPLH+AA N+ + + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + D G TPLH+ A + + + LL GA+VN
Sbjct: 61 EIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + D G TPLH+AA+ + + + LL GA+VN S
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + D G TPLH+AA + + + LL +GA+VN
Sbjct: 57 RGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + D G+TPLH+AA + + + LL +GA+VN
Sbjct: 94 EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA ++ D G TPLH+AA + + + LL +GA+VN
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
G + V ++A GA + D G TPLH+AA + + + + LL GA+V+ + + F
Sbjct: 25 GQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF 81
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + +D G TPLH+AA + + + LL GA+VN +
Sbjct: 25 GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
KG E+V +L GA + D G+TPLH+AA + + + LL GA+VN + F
Sbjct: 57 KGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF 114
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + D G TPLH+AA + + + LL +GA+VN
Sbjct: 94 EIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 80 IQVAK-GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+QV K G+ E+ +L GA +LKD GN +H AA+ + Q LL F A+VN+
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE 99
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E+V +L GA + D +G TPLH+AA + + + LL GA+VN
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
E+V +L GA + D G TPLH+AA + V + LL GA+VN + F
Sbjct: 61 EIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF 114
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
G + V ++A GA + D G TPLH+AA + + + LL GA+VN
Sbjct: 25 GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
+G TPLHIAA+ N V V ++LL +G N +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN-VSQIPYFP 142
+G E+V +L+ A L + G TPLH+ AQ V V L+ G V+ +++ Y P
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
I +G E VL++L A+ G TPLH+AA+ V V + LL A N +
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 49 LRAYTGYG-INTLLWYMQHEP----QTVLQYT--HAATIQVAKGDKELVLSILAAGAALE 101
L + YG I + + +QH+ +T L Y+ H A Q G ++V +L GA+
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ---GHTDIVTLLLKNGASPN 371
Query: 102 LKDGDGNTPLHIAAQNNSVSVTQAL 126
DG TPL IA + +SVT L
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G +V ++L GA+ + + TPLH+AA+ V + LL A+VN
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
G +V +L A L G+TPLHIAA+ V ALL
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
I + E+ S+L G + + G TPLH+AAQ + LL A N+
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + D +G+TPLH+AA + + + LL GA+VN
Sbjct: 94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA + +D G TPLH+AA N + + + LL GA+VN
Sbjct: 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
E+V +L GA + D G TPL +AA + + + LL GA+VN + +
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G + V ++A GA + D G TPLH+AA + + + LL GA+VN I
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + D G+TPLH+AA + + + LL GA+VN
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + D G+TPLH+AA + + + LL GA+VN
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G + V ++A GA + D G TPLH+AA + + + LL GA+VN I
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + D G+TPLH+AA + + + LL GA+VN
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L GA + D G+TPLH+AA + + + LL GA+VN
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 73 QYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
QY H +T +V +L AG + + + TPLH+AA ++ + LL GA+
Sbjct: 43 QYGHFSTTEV----------LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 133 VNVSQI 138
VN +
Sbjct: 93 VNAKDM 98
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG----AEVNV 135
++ A+ ++ + IL A A D G +PLH+AAQ S T+ LL G A V
Sbjct: 7 LEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 136 SQIP 139
+ P
Sbjct: 67 DRTP 70
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ ++G +V +L GA + KD T LH A ++N V + L+ +GA+V+
Sbjct: 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
E V ++ AGA ++ KD +G+T LH+AA+ V Q LL G
Sbjct: 58 EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G ++ ++ AGA ++ D TPL AA+NN + + L+ GA V+
Sbjct: 22 GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 93 ILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+LAA L + G++PLHIAA+ N L ++V +
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ GD E VL +L GA + + DG T LH A +++V + + L+ GA +N
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAA 115
+ AKG E++ ++ A + +KD DG TPLH AA
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 73 QYTHAATIQVAK-GDKELVLSILAA-GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
+Y ++ A+ G++E ++++L DG +TPLH+AA N V + Q LL G
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 131 AEVNVS 136
A+V+
Sbjct: 82 ADVHAK 87
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 67 EPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
+PQ+ H A + K++ +L GA + K+ D TPLH+AA+ V + L
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Query: 127 LGFGAEVNV 135
GA++N
Sbjct: 267 HKHGAKMNA 275
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+V +L GA + KD G PLH A VT+ LL GA VN
Sbjct: 72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 109 TPLHIAAQNNSVSVTQALLGFGAE 132
TPLH AA N V V LL GA+
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGAD 149
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
AKG+ ++V +L A+ ++D +GNTPLH+A V + L+ GA +
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L G + KD G +PLHIAA + +ALL GA VN
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
I + G E+V ++L GA + + +G TPLH AA N + LL GA
Sbjct: 79 IAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
AKG+ ++V +L A+ ++D +GNTPLH+A V + L+ GA +
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L G + KD G +PLHIAA + +ALL GA VN
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
I + G E+V ++L GA + + +G TPLH AA N + LL GA
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E V S++A G ++ K TPL++A +N + + LL GA+VN
Sbjct: 111 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 92 SILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
++++ G A+ + D +PLH A +S + LL GA+VN
Sbjct: 21 NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 80 IQVAK-GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+QV K G+ E+ +L GA +LKD G +H AA+ + Q LL F A+VN+
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE 99
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 57 INTLLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQ 116
+ LL P + ++ A + G + L +L GA+ ++D G +P+H AA+
Sbjct: 18 VRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR 77
Query: 117 NNSVSVTQALLGFGAEVNV 135
+ + L+ GA+VNV
Sbjct: 78 TGFLDTLKVLVEHGADVNV 96
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 48 HLRAYTGYGINTLLWYMQHEPQT-VLQYTHAATIQVA-KGDKELVLSILAAGAALELKDG 105
H A TG+ ++TL ++H V T A I +A + V+S LAA + L +D
Sbjct: 73 HDAARTGF-LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDA 131
Query: 106 DGNTPLHIAAQNNSVSVTQALLG 128
G TPL +A Q + + L G
Sbjct: 132 RGLTPLELALQRGAQDLVDILQG 154
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS 121
+ V E+ ++L AG EL+D GNTPLH+A + ++
Sbjct: 48 LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA 89
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 74 YTHAATIQVAKG-DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
+ H A I K E++ + A L ++ TPLH+A N + +ALLG G +
Sbjct: 8 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 67
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A+I G EL++S+ A A E +G T LH+A + + LL GA+VN
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNAQE--PCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS 121
+ V E+ ++L AG EL+D GNTPLH+A + ++
Sbjct: 51 LAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA 92
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 74 YTHAATIQVAKG-DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
+ H A I K E++ + A L ++ TPLH+A N + +ALLG G +
Sbjct: 11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A+I G EL++S+ A A E +G T LH+A + + LL GA+VN
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQE--PCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G + L +L GA+ ++D G +P+H AA+ + + L+ GA+VNV
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 102
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 48 HLRAYTGYGINTLLWYMQHEPQT-VLQYTHAATIQVA-KGDKELVLSILAAGAALELKDG 105
H A TG+ ++TL ++H V T A I +A + V+S LAA + L +D
Sbjct: 79 HDAARTGF-LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDA 137
Query: 106 DGNTPLHIAAQNNSVSVTQALLG 128
G TPL +A Q + + L G
Sbjct: 138 RGLTPLELALQRGAQDLVDILQG 160
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 80 IQVAK-GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+QV K G+ E+ +L GA +LKD G +H AA+ + Q LL F A+VN+
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 68 PQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
P + ++ A + G + L +L GA+ ++D G +P+H AA+ + + L+
Sbjct: 35 PDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 128 GFGAEVN 134
GA+VN
Sbjct: 95 EHGADVN 101
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 80 IQVAK-GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+QV K G+ E+ +L GA +LKD G +H AA+ + Q LL F A+VN+
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 68 PQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
P + ++ A + G + L +L GA+ ++D G +P+H AA+ + + L+
Sbjct: 37 PDALNRFGKTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 128 GFGAEVN 134
GA+VN
Sbjct: 97 EHGADVN 103
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+G +V+ ++ GA L DG+G + +H+AAQ S+ L+ G +V++
Sbjct: 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 88 ELVLSILAAGAALELKDGDGN-TPLHIAAQNNSVSVTQALLGFGAE 132
+LV ++ GA ++ GD N TPLH A + +S+ L+ +GA+
Sbjct: 56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+V +L GA + G TPLH+AA + + + + LL GA+VN
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 80 IQVAKGDKELVLSILAA-GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
++ A+ ++ + IL A GA + D G+TPLH+AA + + + LL GA+VN +
Sbjct: 19 LEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 87 KELVLSILAAGAALELKD-GDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+E V +L GA ++ D G +PL A +NNS+S+ Q LL GA VN
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
LE ++ DG T LH+A Q LL GA+++ I
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI 147
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E V S++A G ++ K TPL++A +N + + LL GA+VN
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G +V ++ GA + + + +TPLH+AA + + Q LL + A++N
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 101 ELKDGD--GNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+L GD G +PLH A + +V + L+ GA +NV
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A G E+V +L GA + D G TPLH+AA + + + LL GA+VN
Sbjct: 53 LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN-VSQIPYFP 142
G + V ++A GA + KD G TPL++A + + + + LL GA+VN V I + P
Sbjct: 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G +V ++ GA + + + +TPLH+AA + + Q LL + A++N
Sbjct: 44 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 101 ELKDGD--GNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+L GD G +PLH A + +V + L+ GA +NV
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 62 WYMQHEPQTVLQYT--HAATIQVAKGDKELVLSILAAGAALELKDGD-GNTPLHIAAQNN 118
W +Q E + +T H A I D E+V + AGA L + G TPLH+A +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHK---DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 119 SVSVTQALLGFGAE 132
+ SV + LL GA+
Sbjct: 204 AASVLELLLKAGAD 217
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
LE ++ DG+TPLH+A + + + L GA++N +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 62 WYMQHEPQTVLQYT--HAATIQVAKGDKELVLSILAAGAALELKDGD-GNTPLHIAAQNN 118
W +Q E + +T H A I D E+V + AGA L + G TPLH+A +
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHK---DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 119 SVSVTQALLGFGAE 132
+ SV + LL GA+
Sbjct: 204 AASVLELLLKAGAD 217
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
LE ++ DG+TPLH+A + + + L GA++N +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G ELV +L GA++ + GNT LH A V V + LL GA V V
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G +L+ +L GA ++ D PLH+A Q V + LL A+ N
Sbjct: 97 GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+G ++V +L + A KD GNTPL A + LL GA +N S
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 95 AAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
A+G + + DG++PLH+AA + + LL GA
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA 110
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 63 YMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSV 122
+ H +T+L H A+I KGD V +L G+ +KD G TPLH A + + V
Sbjct: 5 FTNHRGETLL---HIASI---KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV 58
Query: 123 TQALLGFGAEVNVS 136
+ LL A VN +
Sbjct: 59 VELLLQHKALVNTT 72
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 108 NTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
++PLH AA+N V + + LL +GA N I
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
+ + +V ++ AGA + D G TPLH AA N + AL+ GA +
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
L +D +G+T L+IAA+ ++S+ ALL +GA+
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+G +TPLH AA N VSV + LL GA+V+
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
+V +L GA + KD G PLH A V + L+ GA VNV+ + F
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 109
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
AKG E+ +L GA K+ DGNTPL + ++
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT 153
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+G +TPLH AA N VSV + LL GA+V+
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
+V +L GA + KD G PLH A V + L+ GA VNV+ + F
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 113
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
AKG E+ +L GA K+ DGNTPL + ++
Sbjct: 121 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT 157
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
+G +TPLH AA N VSV + LL GA+V
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQHGADV 70
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
+V +L GA + KD G PLH A V + L+ GA VNV+ + F
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 111
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
AKG E+ +L GA K+ DGNTPL + ++
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT 155
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAG 97
+++ + THA ++ KG K+LVLS+ +AG
Sbjct: 65 KSLARVTHAEAVKALKGSKKLVLSVYSAG 93
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G T LHIA N +V++ +ALL GA V+
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVS 102
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 66 HEPQTVLQY-THAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHI 113
+ P ++ Y H + G +E+V ++ GA + +D GNT LHI
Sbjct: 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
G+ + +D DG TP+ +AAQ + V L+ GA V
Sbjct: 303 GSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
A ++ +KG ++V +L G + D +G TPL A N V + LL GA+
Sbjct: 70 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
A ++ +KG ++V +L G + D +G TPL A N V + LL GA+
Sbjct: 88 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
A ++ +KG ++V +L G + D +G TPL A N V + LL GA+
Sbjct: 72 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|2H8A|A Chain A, Structure Of Microsomal Glutathione Transferase 1 In
Complex With Glutathione
Length = 154
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 37 AYLTSLPRPDSHLRAYTGYGINTLLWY 63
AYLT LP+P+ L + GYG+ + Y
Sbjct: 119 AYLTPLPQPNRGLAFFVGYGVTLSMAY 145
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
LE KD +G+T L A +NN + + + LL G+ VN
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G E+ +L GA + ++ +G TPL +A++ + + LL GA+++ +
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 79 TIQVAKGDK--ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
+ +A G K E+ ++ GA++ +KD PLH AA S+ + + L G G
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 79 TIQVAKGDK--ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
+ +A G K E+ ++ GA++ +KD PLH AA S+ + + L G G
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGN-TPLHIAAQNNSVSVTQALL 127
+ ++ H V D +LV +L GA + ++ +G TPLH A Q + + + LL
Sbjct: 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
Query: 128 GFGAE 132
GA+
Sbjct: 80 RHGAD 84
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+Q+++ D +V +L GA L+ +G TP +AA SV + + L GA+VN
Sbjct: 67 VQMSRED--IVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN 119
>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
Length = 727
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 12 WTDKFELINEHISNL-ITWQDTRCDHAYLTSLP 43
W D+ ELIN IS + W++ + + Y++ LP
Sbjct: 510 WKDRLELINYRISPTGMEWEEYQKQYTYMSKLP 542
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 80 IQVAK-GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+QV K G+ E+ +L GA +LKD G +H AA+ + Q LL A+VN+
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE 99
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 79 TIQVAKGDK--ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
+ +A G K E+ ++ GA++ +KD PLH AA S+ + + L G G
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
A ++ G ++V +L + + D +G TPL A + N V +ALL GA++
Sbjct: 72 ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 85 GDKELVLSILAAGAALELKDGDGN-TPLHIAAQNNSVSVTQALLGFGAEVNVS 136
G + V + AGA L+ +D G T LH+AA V +AL+ GA++ V
Sbjct: 87 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 86 DKELVLSILAAGAALELKDGDGN-TPLHIAAQNNSVSVTQALLGFGAE 132
D +LV +L GA + ++ +G TPLH A Q + + + LL GA+
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 79 TIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+Q+++ D +V +L GA L+ +G TP +AA SV + + L GA+VN
Sbjct: 46 AVQMSRED--IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 85 GDKELVLSILAAGAALELKDGDGN-TPLHIAAQNNSVSVTQALLGFGAEVNVS 136
G + V + AGA L+ +D G T LH+AA V +AL+ GA++ V
Sbjct: 88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
LV I+ G L+ K DGNT LH AA N + LL
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
A ++ G ++V +L + + D +G TPL A N V +ALL GA++
Sbjct: 72 ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
LV I+ G L+ K DGNT LH AA N + LL
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 93 ILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
+L AGA +D G TPLH A +++ V Q LL
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL 104
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 72 LQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
+ T AT++ + D E VL + G G T L +A + V V +ALL A
Sbjct: 149 IMLTALATLKT-QDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEA 207
Query: 132 EVNV 135
+VNV
Sbjct: 208 DVNV 211
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGF 129
A + V+ G ++V ++LA A + ++D DG+T L A ++ + LL
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAV 238
>pdb|3C60|A Chain A, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|E Chain E, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
Length = 199
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 52 YTGYGINTLLWYMQHE---PQTVLQYTHAATIQVAKG 85
Y+ G TL WY+Q+ PQ +LQ T A ++G
Sbjct: 24 YSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRG 60
>pdb|3RGV|A Chain A, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 200
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 52 YTGYGINTLLWYMQHE---PQTVLQYTHAATIQVAKG 85
Y+ G TL WY+Q+ PQ +LQ T A ++G
Sbjct: 24 YSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRG 60
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDH---AYLTSLP 43
++ I +P+W +K+E I ++ + + TRC H +YLT P
Sbjct: 17 LYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNP 62
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
GD + V +A G + G PLH AA + + + LL GA++N
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 85 GDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
GD + V +A G + G PLH AA + + + LL GA++N
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 15 KFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTLLWYMQHEPQTVLQY 74
+F L + S +I +RC A P D + L + ++E + +
Sbjct: 142 RFILSCNYSSKIIEPIQSRC--AIFRFRPLRDEDI-------AKRLRYIAENEGLELTEE 192
Query: 75 THAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
A + +A+GD ++IL A AAL+ K D N +A++ + + +L
Sbjct: 193 GLQAILYIAEGDMRRAINILQAAAALDKKITDENV-FMVASRARPEDIREMML 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,464,813
Number of Sequences: 62578
Number of extensions: 168097
Number of successful extensions: 663
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 333
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)