RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy229
(142 letters)
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation of
sedoheptulose to produce sedoheptulose 7-phosphate and
ADP. The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subfamily belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 103 bits (259), Expect = 5e-27
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 1 MHGIVLWRSPA---WTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGI 57
MHGIVLW+ D + N +SNL TWQD RC +L SLP+P SHL +TG+G
Sbjct: 80 MHGIVLWKQDQSCEDGDLISITNTPVSNLYTWQDGRCSEDFLKSLPKPQSHLPIHTGFGC 139
Query: 58 NTLLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILA 95
TL W ++ P+ + + H TIQ + V+++L
Sbjct: 140 ATLFWLQKNGPEFLESFDHCGTIQ------DFVVAMLC 171
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 52.0 bits (125), Expect = 1e-09
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + G E+V +L GA + KD DG TPLH+AA+N + + + LL GA+VN
Sbjct: 12 HLA---ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Score = 49.3 bits (118), Expect = 2e-08
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G E+V +L GA + +D DGNTPLH+AA+N ++ V + LL GA+VN
Sbjct: 45 HLA---AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101
Score = 42.8 bits (101), Expect = 5e-06
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
H A G+ ++V +L GA + +D DG TPLH+AA+N + V + LL
Sbjct: 78 HLA---ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 40.4 bits (95), Expect = 4e-05
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+D DG TPLH+AA N + V + LL GA+VN
Sbjct: 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA 35
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 50.7 bits (122), Expect = 3e-09
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G+ E+V +L GA + KD DGNT LH+AA+N ++ + + LL GA++N+
Sbjct: 33 HLA---ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Score = 41.9 bits (99), Expect = 5e-06
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G+ ELV +L GA ++ GD +T LH+AA+N ++ + + LL GA+VN
Sbjct: 5 AKNGNLELVKLLLEKGA--DVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN 55
Score = 29.5 bits (67), Expect = 0.19
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 111 LHIAAQNNSVSVTQALLGFGAEVNVSQ 137
LH+AA+N ++ + + LL GA+VN+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD 27
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 42.9 bits (102), Expect = 7e-07
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
DGNTPLH+AA+N + V + LL GA+VN
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNA 30
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 46.5 bits (110), Expect = 8e-07
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 67 EPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
E +T L Y + KGD E + + GA + ++D +G P+HIA ++N + + L
Sbjct: 123 ELKTFLHYA------IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176
Query: 127 LGFGAEVNV 135
L GA NV
Sbjct: 177 LEKGAYANV 185
Score = 39.9 bits (93), Expect = 2e-04
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
+K+++ +IL G + +KD + T LH A + + + L +GA+VN+
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155
Score = 29.5 bits (66), Expect = 0.50
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+++ +L GA +KD +G +PLH AA+ + + L+ G +
Sbjct: 171 DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN 218
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 43.0 bits (102), Expect = 1e-06
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 74 YTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
A G ELV +L G + D DGNT LHIAA+N ++ V + LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 28.0 bits (63), Expect = 0.36
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 107 GNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G T LH AA + + + + LL G ++N
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDIN 28
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 44.9 bits (106), Expect = 3e-06
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
A GD +L GA +D DG TPLHIA N V V + LL FGA+
Sbjct: 91 ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141
Score = 36.8 bits (85), Expect = 0.002
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
I A G ++V +L GA L D DG TPL +A +N V Q L
Sbjct: 121 IACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQC 173
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 42.6 bits (100), Expect = 2e-05
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 86 DKELVLSILAAGAALELKDGD-GNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ E+ +L+ GA + +KD GNT LH A +N +T+ LL +GA VN+
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI 196
Score = 36.0 bits (83), Expect = 0.003
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN-NSVSVTQALLGFGAEVNV 135
V +K +V +L GA+ + +D GNTPLHI+ + + LL G +VN
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263
Score = 26.8 bits (59), Expect = 4.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
D+ L +L+ GA + + D N+PLH A ++ + + LL GA +
Sbjct: 180 DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA 229
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 38.0 bits (89), Expect = 4e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
DG TPLH+AA+N ++ V + LL GA++N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 37.2 bits (87), Expect = 9e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
DGNTPLH+AA+N ++ + + LL GA++N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSV-SVTQALLGFGAEVNVS 136
K++V +L AGA + + G TPLH+ N + V + L+ GA+VN
Sbjct: 62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK 113
Score = 38.9 bits (91), Expect = 3e-04
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 19/89 (21%)
Query: 48 HLRAYTGYGINTLLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDG 107
+ A G L Y+ + A T+ V K +L + AGA + KD G
Sbjct: 75 DVNAPERCGFTPLHLYLYN----------ATTLDVIK-----LL--IKAGADVNAKDKVG 117
Query: 108 NTPLHIAAQNNSV--SVTQALLGFGAEVN 134
TPLH+ ++ V + LL GA+VN
Sbjct: 118 RTPLHVYLSGFNINPKVIRLLLRKGADVN 146
Score = 30.4 bits (69), Expect = 0.25
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
LVL +L AG ++ ++ G TPLH AA N+ + L+ GA++N
Sbjct: 239 LVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINA 285
Score = 30.0 bits (68), Expect = 0.40
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 93 ILAAGAALELKDGDGNTPLHIAAQNNSVSVT---QALLGFGAEVNV 135
+LAAGA + + G TPLH+ +S V + LL GA+VN
Sbjct: 33 LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78
Score = 28.8 bits (65), Expect = 1.0
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSV 122
+ +++ +L GA + D G TPL + ++ + +V
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANV 167
Score = 28.5 bits (64), Expect = 1.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 81 QVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSV--SVTQALLGFGAEVNV 135
Q K +V ++ AG D GNTPLH A +S S+ LL G +N
Sbjct: 196 QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 40.0 bits (93), Expect = 2e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
K++V+++L GA + +D TP+H AA N+V + LL +GA++
Sbjct: 355 KDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401
Score = 33.9 bits (77), Expect = 0.023
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 93 ILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+L GA + KD TP+H AA+ + + LL +GA+VN+
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNI 206
Score = 33.5 bits (76), Expect = 0.027
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 57 INTLLWY------MQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTP 110
INTLL Y + + T L + T V +++ GA + K+ D +TP
Sbjct: 391 INTLLDYGADIEALSQKIGTALHFALCGTNPYMS-----VKTLIDRGANVNSKNKDLSTP 445
Query: 111 LHIAAQNN-SVSVTQALLGFGAEVNVSQI 138
LH A + N + V + LL GA+VN I
Sbjct: 446 LHYACKKNCKLDVIEMLLDNGADVNAINI 474
Score = 30.8 bits (69), Expect = 0.23
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS-VTQALLGFGAEVNVSQI 138
+ D E L + AG ++ D NTPLH A+Q S+S + LL GA+VN I
Sbjct: 248 IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI 305
Score = 28.9 bits (64), Expect = 0.93
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNN-SVSVTQALLGFGAEVNVSQIPY 140
LV +L GA + K+ G TPL++ A+N + L+ GA+VN + Y
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY 341
Score = 27.3 bits (60), Expect = 3.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAA---QNNSVSVTQALLGFGAEVN 134
D E + +++ GA + D TPLH A+ +N + +T LL GA VN
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVIT--LLELGANVN 369
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 39.2 bits (92), Expect = 3e-04
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSH-------LRAYT 53
G++L D ++ I WQD+R + + LR +
Sbjct: 77 GEGVILV------DA---NGRPLTPAILWQDSRTAEECERLEEQIGADEIYERTGLRPHP 127
Query: 54 GYGINTLLWYMQHEPQTVLQYTHAATIQ 81
+ LLW +H P+ + T+
Sbjct: 128 MFSGPKLLWLKEHRPEIYSKADKILTVA 155
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 37.5 bits (86), Expect = 0.001
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 66 HEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS-----V 120
H L +KGD ++V +LA+GA + KD DG+TPLH+AA N + +
Sbjct: 65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI 124
Query: 121 SVTQALLGFGA 131
V + LL GA
Sbjct: 125 EVAKLLLEAGA 135
Score = 33.6 bits (76), Expect = 0.020
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 85 GDKELVLSILAAGAALE---LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G+ E+ +L AGA L+ L+D DGNTPLH AA N + + LL GA+ N
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175
Score = 31.7 bits (71), Expect = 0.083
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
GD ++V +L AGA ++ G T L AA+N + + + LL
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 34.6 bits (80), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 98 AALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
L DG+GNTPLH+AA+ ++ + Q LL G ++N+
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL 44
Score = 32.7 bits (75), Expect = 0.008
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 67 EPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIA 114
T L H A G ELV +L G L L+D DG T L +A
Sbjct: 15 NGNTPL---HLA---AKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 36.6 bits (84), Expect = 0.003
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
D+ V +L G + D DGN PLHIA++ N+ + LL GA+ N
Sbjct: 51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPN 99
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 34.8 bits (80), Expect = 0.009
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
+ G+ L+ +L A ++ D G TPLHIAA LL V++
Sbjct: 533 ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA 589
Score = 27.5 bits (61), Expect = 2.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
+ D + +L G ++ +D G T L +A + V + + L+ GA+V
Sbjct: 632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681
Score = 27.1 bits (60), Expect = 4.0
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPL--HIAAQNNSV 120
I +KG ++ VL +L + ++D +GNT L I+A+++ +
Sbjct: 564 IAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKI 606
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 34.0 bits (79), Expect = 0.017
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 19/78 (24%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDH--AYLTSLPRPDSHLRAYT----- 53
MHG+VL DK + + I W D R +T R L T
Sbjct: 79 MHGLVL------LDK---DGKVLRPAILWNDQRTTAECEEITE--RVGGELIEITGNPAL 127
Query: 54 -GYGINTLLWYMQHEPQT 70
G+ LLW +HEP+
Sbjct: 128 PGFTAPKLLWLREHEPEN 145
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 33.5 bits (77), Expect = 0.028
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G + +KD G TPLH A NN+ + LL GA N+
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220
Score = 33.1 bits (76), Expect = 0.031
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN--NSVSVTQALLGFGAEV 133
+ KE+V +L GA + D +G TPL A NS S+ + LL GA V
Sbjct: 75 LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134
Query: 134 NVS 136
N+
Sbjct: 135 NIK 137
Score = 31.2 bits (71), Expect = 0.16
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
GA L + G+TPLHIA NN+ + + LL G +
Sbjct: 215 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
Score = 26.9 bits (60), Expect = 4.0
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSV--SVTQALLGFGAEVN 134
I +V +L GA + +K+ DG LH+ ++N + + + L+ G ++N
Sbjct: 111 LYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170
Query: 135 V 135
Sbjct: 171 A 171
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 33.0 bits (75), Expect = 0.033
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
DG TPLH+A + + + L+ GA+ ++
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIP 131
Score = 32.3 bits (73), Expect = 0.058
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ V GD + + ++ A L+++D G TPL IA +++ + LL GA ++
Sbjct: 141 LAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195
Score = 28.4 bits (63), Expect = 1.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGN-TPLHIAAQNNSVSVTQALLGFGAEVNV 135
I +AKGD + +L +GA ++ +G L A +NN + + + + GA+ N+
Sbjct: 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230
Score = 28.0 bits (62), Expect = 1.9
Identities = 10/48 (20%), Positives = 26/48 (54%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+++ ++A GA ++ + D +PLH+A + + L+ A +++
Sbjct: 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family
of carbohydrate kinases. This subfamily includes
glycerol kinases (GK; EC 2.7.1.30) and glycerol
kinase-like proteins from all three kingdoms of living
organisms. Glycerol is an important intermediate of
energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Human GK deficiency, called
hyperglycerolemia, is an X-linked recessive trait
associated with psychomotor retardation, osteoporosis,
spasticity, esotropia, and bone fractures. Under
different conditions, GKs from different species may
exist in different oligomeric states. The monomer of GKs
is composed of two large domains separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. The high affinity ATP binding site of GKs is
created only by a substrate-induced conformational
change. Based on sequence similarity, some GK-like
proteins from metazoa, which have lost their GK
enzymatic activity, are also included in this CD.
Members in this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 484
Score = 33.0 bits (76), Expect = 0.044
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 21 EHISNLITWQDTR----CDHAYLTSLPRPDSHLRAYTGYGINT------LLWYMQHEPQ 69
+ + N I WQDTR + L + D + R TG I+ L W +++ P+
Sbjct: 91 KPLYNAIVWQDTRTSEIVEE--LKADGNAD-YFREKTGLPISPYFSALKLRWLLENVPE 146
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 32.0 bits (73), Expect = 0.080
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 107 GNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G T LH+AA + + + LL GA V
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPA 156
>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the C-terminal domain.
Length = 245
Score = 31.9 bits (73), Expect = 0.082
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 18/77 (23%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTR----CDH----AYLTSLPRPDSHLRAY 52
HG+VL DK ++ + I W DTR ++ L + +
Sbjct: 79 GHGLVLL------DK---NDKPLYPAILWNDTRTAEIVENLKEEGGADKL-YEITGNTIW 128
Query: 53 TGYGINTLLWYMQHEPQ 69
G+ ++ L W +HEP+
Sbjct: 129 PGFTLSKLRWLKEHEPE 145
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 30.7 bits (69), Expect = 0.24
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 80 IQVAKG-DKELVLSILAAGAALELKDGDGNTPLH--IAAQNNSVSVTQALLGFGAEVN 134
I +A+ D +V S L G L KD G T LH I N S + + L +G ++N
Sbjct: 289 ITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN 346
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 30.4 bits (69), Expect = 0.26
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 23/89 (25%)
Query: 1 MHGIVLWRSPAWTDKFELINEH--ISNLITWQDTRC-------DHAYLTSLPRPDSHLRA 51
HG+VL D + I W DTR + + L+A
Sbjct: 84 GHGLVLL------DA-----NGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQA 132
Query: 52 YTGYGINTLLWYMQHEPQTVLQYTHAATI 80
G+ LLW ++EP + AA I
Sbjct: 133 MPGFTAPKLLWLKENEPDL---FAKAAKI 158
>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of a group of gluconate kinases (GntK, also
known as gluconokinase; EC 2.7.1.12) encoded by the gntK
gene, which catalyzes the ATP-dependent phosphorylation
of D-gluconate and produce 6-phospho-D-gluconate and
ADP. The presence of Mg2+ might be required for
catalytic activity. The prototypical member of this
subfamily is GntK from Lactobacillus acidophilus. Unlike
Escherichia coli GntK, which belongs to the superfamily
of P-loop containing nucleoside triphosphate hydrolases,
members in this subfamily are homologous to glycerol
kinase, xylulose kinase, and rhamnulokinase from
Escherichia coli. They have been classified as members
of the FGGY family of carbohydrate kinases, which
contain two large domains separated by a deep cleft that
forms the active site. This model spans both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Some uncharacterized homologous sequences are also
included in this subfamily. The Lactobacillus gnt operon
contains a single gntK gene. The gnt operons of some
bacteria, such as Corynebacterium glutamicum, have two
gntK genes. For example, the C. glutamicum gnt operon
has both a gluconate kinase gntV gene (also known as
gntK) and a second hypothetical gntK gene (also known as
gntK2). Both gluconate kinases encoded by these genes
belong to this family, however the protein encoded by C.
glutamicum gntV is not included in this model as it is
truncated in the C-terminal domain.
Length = 440
Score = 29.5 bits (67), Expect = 0.60
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 21 EHISNLITWQDTRCDHAYLTSL-PRPDSH-------LRAYTGYGINTLLWYMQHEPQTVL 72
E ++ +ITW DTR Y L R D + Y + LLW + P+
Sbjct: 88 EPLTPVITWADTRAA-EYAEELKERLDGRELYQRTGCPLHPMYPLAKLLWLKEERPELFA 146
Query: 73 QYTHAATI 80
+ +I
Sbjct: 147 KAAKFVSI 154
>gnl|CDD|222881 PHA02566, alt, ADP-ribosyltransferase; Provisional.
Length = 684
Score = 28.2 bits (63), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 81 QVAKGDKEL---VLSILAAGAALELKDGDGNTPLHIAAQN 117
QV GDK + ++ + G+ ELK G G+ P I A N
Sbjct: 56 QVKPGDKFMHVVLMQLSEKGSLAELKGGLGSDP--IGAMN 93
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 27.5 bits (61), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 97 GAALELKDG-DGNTPLHIAAQNNSVSVTQAL 126
GA + K+ GNTPLHIA + + L
Sbjct: 81 GADINGKERVFGNTPLHIAVYTQNYELATWL 111
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 28.0 bits (63), Expect = 1.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 21 EHISNLITWQDTRCD 35
+ N ITW+D R D
Sbjct: 91 KPYHNFITWKDLRAD 105
>gnl|CDD|132594 TIGR03555, F420_mer, 5,10-methylenetetrahydromethanopterin
reductase. Members of this protein family are
5,10-methylenetetrahydromethanopterin reductase, an
F420-dependent enzyme of methanogenesis. It is
restricted to the Archaea [Energy metabolism,
Methanogenesis].
Length = 325
Score = 27.9 bits (62), Expect = 2.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 96 AGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
AGA L K G+ P+++ AQ + T + G +N S
Sbjct: 138 AGAKLGFKAIQGSIPIYMGAQGPKMLKTAGEIADGVLINAS 178
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 27.7 bits (62), Expect = 2.1
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 18/77 (23%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRC--DHAYLTSLPRPDSHLRAYT----- 53
MHG+VL D E + I W DTR + L + D + T
Sbjct: 77 MHGLVL------LDAN---GEVLRPAILWNDTRTAQECEELEAEL-GDERVLEITGNLAL 126
Query: 54 -GYGINTLLWYMQHEPQ 69
G+ LLW +HEP+
Sbjct: 127 PGFTAPKLLWVRKHEPE 143
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 27.5 bits (61), Expect = 3.2
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAAQNN---SVSVTQALLGFGAEVNV 135
+ E++L ++ GA L D DG T L + Q+N + + + LL G ++N
Sbjct: 124 NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT 176
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 27.1 bits (60), Expect = 3.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSV 122
E++ ++ +G+++ +D DG LH+ N +V +
Sbjct: 104 EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRI 138
>gnl|CDD|221301 pfam11899, DUF3419, Protein of unknown function (DUF3419). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 398 to
802 amino acids in length.
Length = 376
Score = 27.2 bits (61), Expect = 3.6
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 12 WTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTL 60
F + W+D R D L PD + A T G N L
Sbjct: 4 SERLFTQFFRGLVYAQIWEDPRVDMEALN--LGPDDTVLAITSAGCNAL 50
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 27.1 bits (60), Expect = 4.0
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 65 QHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNT 109
Q E V + V + AGA EL+D DG
Sbjct: 1141 QDEAAKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTL 1185
>gnl|CDD|182816 PRK10894, PRK10894, lipopolysaccharide transport periplasmic
protein LptA; Provisional.
Length = 180
Score = 26.3 bits (58), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 92 SILAAGA-ALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
S+LAA A L GD + P+HI + S+ + ++ F V V+Q
Sbjct: 13 SLLAASIPAFALT-GDTDQPIHIDSDQQSLDMQGNVVTFTGNVVVTQ 58
>gnl|CDD|235022 PRK02271, PRK02271, methylenetetrahydromethanopterin reductase;
Provisional.
Length = 325
Score = 26.4 bits (59), Expect = 5.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 95 AAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
AAGA L +K G P+++ AQ + + G +N S
Sbjct: 138 AAGAKLNVKPVQGEIPIYMGAQGPKMLELAGEIADGVLINAS 179
>gnl|CDD|224935 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 26.7 bits (59), Expect = 5.9
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 33 RCDHAYLTSLPRPDSHLRAYTGYGINTLLWYMQHEPQTVLQYT-HAATIQVAKGDKELVL 91
RC YL LPRPD L A I + E L+ HA GD +LV
Sbjct: 93 RC--FYLAGLPRPDVGLGAEKIEQIEEIGIDEPDEKVERLREVLHAYKKGEIDGD-DLVH 149
Query: 92 SILAAGAALELKDGDG 107
I ALE+ DG G
Sbjct: 150 EI---AEALEVDDGTG 162
>gnl|CDD|220956 pfam11051, Mannosyl_trans3, Mannosyltransferase putative. This
family is conserved in fungi. Several members are
annotated as being alpha-1,3-mannosyltransferase but
this could not be confirmed.
Length = 263
Score = 26.4 bits (59), Expect = 6.0
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 2 HGIVLWRSP-AWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGIN 58
G++ W+ P W + I+ + + + + Y LP + L + G +
Sbjct: 118 TGLLFWKDPDLWKRTTSPLFYEIAGIPKLEPSSEESRY-FGLPLKEVPLHDFFGTIPD 174
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 26.4 bits (59), Expect = 6.5
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 27 ITWQDTRC--DHAYLTSLPR-PDSHLRAYTG------YGINTLLWYMQHEPQ 69
I + D R + L R + + TG Y +LW+ ++EP+
Sbjct: 96 IIYMDRRAKEEVEELKE--RIGEEEIFERTGNPLDSQYVAPKILWFKRNEPE 145
>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit;
Provisional.
Length = 846
Score = 26.0 bits (57), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 78 ATIQVAKGDKELVLSILAAGAALELKDGDGN 108
A + +A+GD ++IL A AAL+ K D N
Sbjct: 716 AILYIAEGDMRRAINILQAAAALDDKITDEN 746
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 26.1 bits (57), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVS 136
+++ D + T L+ A N++ + LL +GA VN +
Sbjct: 455 IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTT 491
>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
Length = 499
Score = 26.0 bits (58), Expect = 9.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 23 ISNLITWQDTR 33
I N I WQD R
Sbjct: 98 IYNAIVWQDRR 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,151,175
Number of extensions: 611854
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 82
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)