RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy229
(142 letters)
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 58.6 bits (143), Expect = 6e-12
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G + L +L GA+ ++D G +P+H AA+ + + L+ GA+VNV
Sbjct: 41 QVM----MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96
Score = 50.5 bits (122), Expect = 6e-09
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G + + ++ GA + + DG G P+H+A Q +V L ++++
Sbjct: 73 HDAA---RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLH 127
Score = 48.2 bits (116), Expect = 4e-08
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 76 HAATIQVAKGDKELVLSILAA-GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
AA A+GD + V +L + + G T L + S ++ LL GA N
Sbjct: 8 GAA----ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62
Query: 135 V 135
V
Sbjct: 63 V 63
Score = 46.6 bits (112), Expect = 1e-07
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
H A V +G +V S LAA + L +D G TPL +A Q + + L
Sbjct: 106 HLA---VQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 34.3 bits (80), Expect = 0.004
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 107 GNTPLHIAAQNNSVSVTQALLG-FGAEVN 134
L AA V + LL +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPD 30
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 58.2 bits (142), Expect = 8e-12
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A+G+ + + + + D +G TPL AA + ++V + LL GA+ +
Sbjct: 8 HQL---AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Score = 55.9 bits (136), Expect = 7e-11
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
A A G +V +L GA +L + L +A + + LL G +VN
Sbjct: 41 MWAA---AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Score = 54.7 bits (133), Expect = 2e-10
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ V +L +GA ++ G + +A SV Q + ++
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163
Score = 54.7 bits (133), Expect = 2e-10
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
KG ++V +L G + D +G TPL A N V + LL GA+
Sbjct: 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Score = 44.3 bits (106), Expect = 1e-06
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 105 GDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + +H A + + +N
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVIN 30
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 57.4 bits (140), Expect = 9e-12
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
GD + V +A G + G PLH AA + + + LL GA++N
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Score = 50.1 bits (121), Expect = 4e-09
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G E++ +L GA + D TPL A VS + LL GA+ V
Sbjct: 50 CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 43.9 bits (105), Expect = 1e-06
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A +N + + + G +VN
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVN 34
Score = 39.3 bits (93), Expect = 5e-05
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSV 122
+A V +G V +L+ GA +K DG T ++
Sbjct: 78 LSA---VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 59.8 bits (146), Expect = 1e-11
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A + GD E VL +L GA + + DG T LH A +++V + + L+ GA +N
Sbjct: 46 AAC----SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Score = 54.8 bits (133), Expect = 6e-10
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A AKG E++ ++ A + +KD DG TPLH AA + L+ ++
Sbjct: 204 HVAA---AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
Score = 54.0 bits (131), Expect = 1e-09
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A I + ++V ++ GA + D +G PLH AA + + + L+ GA V
Sbjct: 78 HQACI---DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Score = 52.1 bits (126), Expect = 4e-09
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
++ + + G T LH+AA V + L+ +VN+
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Score = 48.7 bits (117), Expect = 8e-08
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
HAA + G ++ +++ GA + + +G+TPL IA + + Q +
Sbjct: 111 HAA---ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Score = 44.0 bits (105), Expect = 4e-06
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
HAA G +E ++ +E + G T +A ++ + + +
Sbjct: 237 HAAAH---WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
Score = 42.1 bits (100), Expect = 1e-05
Identities = 3/36 (8%), Positives = 11/36 (30%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+++ D + S + + + + V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV 36
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
++ G + + + ++K DG A + LL GA++N
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADIN 67
Score = 35.9 bits (84), Expect = 0.002
Identities = 6/59 (10%), Positives = 12/59 (20%), Gaps = 9/59 (15%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A + +EL+ + + D + Q L
Sbjct: 144 DIA---EEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLNSGHINDV 193
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 58.8 bits (143), Expect = 1e-11
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 68 PQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
P +L A G+ E+V + + +G T LH A + S+ L+
Sbjct: 21 PLVLL---LDA---ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74
Query: 128 GFGAEVN 134
GA VN
Sbjct: 75 TAGANVN 81
Score = 53.4 bits (129), Expect = 1e-09
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A + +V ++ AGA + D G TPLH AA N + AL+ GA +
Sbjct: 59 HNAIC---GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114
Score = 43.0 bits (102), Expect = 7e-06
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS-VTQALLGFGAEVN 134
A + + + + +DG T AA + V + G V
Sbjct: 157 VYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216
Score = 41.5 bits (98), Expect = 2e-05
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDG-DGNTPLHIAA--QNNSVSVTQALLGFGAE 132
H A + D + ++++ GAA+ DG T + L
Sbjct: 92 HCA---ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148
Query: 133 VN 134
+
Sbjct: 149 MG 150
Score = 40.7 bits (96), Expect = 4e-05
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 90 VLSILAAGAALELKD---GDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ S+L + + L AA + V Q + + +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS 48
Score = 36.1 bits (84), Expect = 0.002
Identities = 5/59 (8%), Positives = 12/59 (20%), Gaps = 2/59 (3%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G + + ++ L + L + G V
Sbjct: 126 EKCD-PYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGESVTVL 182
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 58.7 bits (143), Expect = 1e-11
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
QT L H A V E+ ++L AG EL+D GNTPLH+A + ++ L
Sbjct: 46 QTPL---HLA---VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 129 FGAEVNVSQI 138
++ I
Sbjct: 100 SCTTPHLHSI 109
Score = 55.2 bits (134), Expect = 3e-10
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A V + +LV +L GA + G +P + S + Q L E
Sbjct: 156 HLA---VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211
Score = 54.1 bits (131), Expect = 8e-10
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 76 HAATIQVAKGDKELVLSIL-AAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A I K V+ + A L ++ TPLH+A N + +ALLG G +
Sbjct: 13 HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE 72
Score = 54.1 bits (131), Expect = 8e-10
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGA------ALELKDGDGNTPLHIAAQNNSVSV 122
T L H A +G V + + L+ + +G+T LH+A+ + + +
Sbjct: 79 NTPL---HLA---CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 123 TQALLGFGAEVN 134
+ L+ GA+VN
Sbjct: 133 VELLVSLGADVN 144
Score = 52.9 bits (128), Expect = 2e-09
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDG-DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A+I G +V +++ GA + ++ +G T LH+A + + LL GA+VN
Sbjct: 122 HLASI---HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 40.2 bits (95), Expect = 7e-05
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 103 KDGDGNTPLHIAAQNNSVS----VTQALLGFGAEVN 134
DG++ LH+A + + V + + G A +N
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN 39
Score = 32.1 bits (74), Expect = 0.040
Identities = 1/48 (2%), Positives = 7/48 (14%), Gaps = 3/48 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVT 123
+ + + + ++ T
Sbjct: 189 QLT---WGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 56.7 bits (138), Expect = 2e-11
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A+I KGD V +L G+ +KD G TPLH A + + V + LL A VN
Sbjct: 15 HIASI---KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Score = 53.2 bits (129), Expect = 5e-10
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G ++V +L A + ++PLH AA+N V + + LL +GA N
Sbjct: 53 HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 48.6 bits (117), Expect = 2e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ G T LHIA+ + + LL G++ NV
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV 38
Score = 44.3 bits (106), Expect = 8e-07
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G ++V +L+ GA+ + G P+ + S+ +
Sbjct: 81 HDA---AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK-NESSSA 136
Query: 136 S 136
S
Sbjct: 137 S 137
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 57.8 bits (141), Expect = 2e-11
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
AA + K++ + ++ D +GNTPL+IA NN + + +AL+ GA++N
Sbjct: 11 EAANQ---RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Score = 48.6 bits (117), Expect = 5e-08
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
+ A D E+ +++ GA + L++ ++P A + +L
Sbjct: 44 NIAVH---NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT 96
Score = 47.8 bits (115), Expect = 1e-07
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
T L + + +++V ++ GA +KD G T + A Q +++ L
Sbjct: 141 YTALIEA-VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 47.1 bits (113), Expect = 2e-07
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 102 LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+K + L A Q ++ V + L +V+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD 33
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALLGFG-AEV 133
A A+G E++ +L L + G L AA+ + + LL G ++
Sbjct: 77 LYA---GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133
Query: 134 N 134
+
Sbjct: 134 D 134
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 84 KGDKELVLSILAAGAA-LELKDGDGNTPLHIAA-----QNNSVSVTQALLGFGAEVN 134
KG + V +L G ++ ++ G T L A + + L+ GA+ +
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 59.0 bits (144), Expect = 2e-11
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G +V ++L GA+ + + TPLH+AA+ V + LL A+VN
Sbjct: 19 HVA---SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Score = 57.5 bits (140), Expect = 8e-11
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A V + ++V +L G + +G TPLHIAA+ N V V ++LL +G N
Sbjct: 184 HVA---VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Score = 57.5 bits (140), Expect = 8e-11
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A +G E VL++L A+ G TPLH+AA+ V V + LL A N
Sbjct: 118 HIA---AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Score = 57.1 bits (139), Expect = 9e-11
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G E+ +L A + K D TPLH AA+ ++ + LL A N+
Sbjct: 52 HMA---ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Score = 56.7 bits (138), Expect = 2e-10
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A +G E+V +L+ A L + G TPLH+ AQ V V L+ G V+
Sbjct: 250 HLA---AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H +G + ++ G ++ G TPLH+A+ ++ + + LL A+VN
Sbjct: 283 HLVAQ---EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338
Score = 56.0 bits (136), Expect = 3e-10
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
QT L H A G +V +L A L G+TPLHIAA+ V ALL
Sbjct: 81 QTPL---HCA---ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 129 FGAEVN 134
A
Sbjct: 135 KEASQA 140
Score = 55.2 bits (134), Expect = 4e-10
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + E+ S+L G + + G TPLH+AAQ + LL A N+
Sbjct: 217 HIA---AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Score = 55.2 bits (134), Expect = 5e-10
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G + +L A +G TPLH+A +N++ + + LL G +
Sbjct: 151 HVA---AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Score = 54.0 bits (131), Expect = 1e-09
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G+ +LV +L A + K G +PLH AAQ + LL GA N
Sbjct: 316 HVA---SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Score = 50.2 bits (121), Expect = 3e-08
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGF---GAE 132
H A +G ++V +L GA+ DG TPL IA + +SVT L +
Sbjct: 349 HQA---AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 405
Query: 133 VNVS 136
V VS
Sbjct: 406 VLVS 409
Score = 48.3 bits (116), Expect = 1e-07
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G + G TPLH+A+ + + + LL GA NV
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV 42
Score = 28.6 bits (65), Expect = 0.75
Identities = 7/75 (9%), Positives = 16/75 (21%), Gaps = 18/75 (24%)
Query: 69 QTVLQYTHAATIQVAKGDKELV---LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQA 125
T L A G + + + + + D +
Sbjct: 378 TTPLAI--AK----RLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV---------DE 422
Query: 126 LLGFGAEVNVSQIPY 140
+L + I +
Sbjct: 423 ILDVSEDEGEELISF 437
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 57.0 bits (139), Expect = 3e-11
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
+T L G+ E+ +L GA +LKD G +H AA+ + Q LL
Sbjct: 39 RTAL---QVM----KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 129 FGAEVN 134
F A+VN
Sbjct: 92 FQADVN 97
Score = 49.3 bits (119), Expect = 2e-08
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+A A+GD E + S+L + ++G G T L + N + + LL GA +
Sbjct: 10 ASA---AARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPD 64
Score = 49.3 bits (119), Expect = 2e-08
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
V+ H A G + + ++L A + ++D +GN PLH+AA+ + V + L+
Sbjct: 71 FAVI---HDAAR---AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 129 FGAE-VN 134
A V
Sbjct: 125 HTASNVG 131
Score = 43.5 bits (104), Expect = 3e-06
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
H A +G +V ++ A+ + ++ G+T +A V + GA
Sbjct: 108 HLA---AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.0 bits (100), Expect = 8e-06
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
L AA + +LL VN
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVN 32
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 56.7 bits (138), Expect = 3e-11
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A +G + ++ + AGA L+++D G P+ +A + V + L
Sbjct: 83 HDA---AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138
Score = 53.2 bits (129), Expect = 5e-10
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
A A+G E V ++L AGA + G P+ + + V + LL GAE N
Sbjct: 17 ATA---AARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNC 72
Score = 52.9 bits (128), Expect = 9e-10
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNT-PLHIAAQNNSVSVTQALLGFGAEVN 134
G + +L GA D T P+H AA+ + L GA ++
Sbjct: 50 QVM----MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Query: 135 V 135
V
Sbjct: 106 V 106
Score = 44.8 bits (107), Expect = 7e-07
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 94 LAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A ++ L AA V +ALL GA N
Sbjct: 1 MEPAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPN 39
Score = 28.2 bits (64), Expect = 0.70
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSV 122
A G +++ + AA G+ I A +
Sbjct: 116 DLA---EELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDI 154
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A K D++ LS L ++ D +G T L A S + L GA+++
Sbjct: 49 WTA---ARKADEQ-ALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103
Score = 56.7 bits (138), Expect = 5e-11
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A E+V +++ GA +E++D G T L +A + + + FG + +
Sbjct: 115 HMA---AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Query: 136 SQI 138
++
Sbjct: 172 EKV 174
Score = 52.9 bits (128), Expect = 1e-09
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDG-DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V + AGA L+ +D G T LH+AA V +AL+ GA++
Sbjct: 81 LFV---AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 135 V 135
V
Sbjct: 138 V 138
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + A + TP AA+ LL +V+
Sbjct: 24 DGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE-DRDVD 70
Score = 40.9 bits (97), Expect = 2e-05
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G+G I ++ A+V
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV 41
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 55.1 bits (134), Expect = 3e-11
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA+VN
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Score = 49.7 bits (120), Expect = 4e-09
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 45.4 bits (109), Expect = 1e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G TPLH+AA+N + V + LL GA+VN
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 57.9 bits (141), Expect = 4e-11
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 74 YTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
+ AA + E LE ++ DG+TPLH+A + + + L GA++
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 134 N 134
N
Sbjct: 185 N 185
Score = 56.8 bits (138), Expect = 1e-10
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A V ++ +L AGA + G TPL A + + + L GA
Sbjct: 197 HLA---VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252
Score = 55.6 bits (135), Expect = 2e-10
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A I G+ V + AAGA + + + G+T LH+A + + + LL
Sbjct: 50 HLAAI---LGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
Score = 54.9 bits (133), Expect = 5e-10
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGA---ALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
H A V + + +L A L+L++ G T LH+AA S + L GA
Sbjct: 14 HLA---VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 133 VNV 135
V V
Sbjct: 71 VLV 73
Score = 52.5 bits (127), Expect = 3e-09
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGD-GNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A I D E+V + AGA L + G TPLH+A + + SV + LL GA+
Sbjct: 163 HVAVI---HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Score = 45.6 bits (109), Expect = 9e-07
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
+A + + + L + A GA GD +P + ++ +
Sbjct: 230 GSA---LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 100 LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
DG+T LH+A + LLGF A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE 36
Score = 31.7 bits (73), Expect = 0.060
Identities = 5/74 (6%), Positives = 11/74 (14%), Gaps = 17/74 (22%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTP--------------LHIAAQNNSVS 121
H A +L + D + N
Sbjct: 83 HLA---CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139
Query: 122 VTQALLGFGAEVNV 135
+ ++
Sbjct: 140 EEPRDEDWRLQLEA 153
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 55.8 bits (136), Expect = 4e-11
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA+VN
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Score = 53.9 bits (131), Expect = 2e-10
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA+VN
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95
Score = 48.9 bits (118), Expect = 1e-08
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
G E+V +L AGA + KD +G TPLH+AA+N + V + LL GA
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 45.0 bits (108), Expect = 4e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G TPLH+AA+N + V + LL GA+VN
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 57.4 bits (140), Expect = 4e-11
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
AT G E ++ AG + D + T LH AA NN + + + + GA V+
Sbjct: 14 VKATQ---YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69
Score = 56.3 bits (137), Expect = 1e-10
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H AT +G +V+ ++ GA L DG+G + +H+AAQ S+ L+ G +V+
Sbjct: 81 HWATR---QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Score = 52.8 bits (128), Expect = 2e-09
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN-NSVSVTQALLGFGAEVN 134
H A G +V ++A G +++ D +G TPL AA +SV T+ LL F VN
Sbjct: 114 HLA---AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170
Score = 52.1 bits (126), Expect = 4e-09
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A V G+ ++ +L AGA ++ ++ G + L +A Q +V + L
Sbjct: 182 HWA---VLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGD-GNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A I +LV ++ GA ++ GD +TPLH A + +S+ L+ +GA+ +
Sbjct: 47 HWAAI---NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Score = 50.1 bits (121), Expect = 2e-08
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 87 KELVLSILAAGAALELKD-GDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ +L ++ L D NT LH A + +V LL GA V+
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Score = 46.3 bits (111), Expect = 5e-07
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
D + A Q + L+ G +V
Sbjct: 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVR 36
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 57.9 bits (141), Expect = 5e-11
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A +G E V S++A G ++ K TPL++A +N + + LL GA+VN
Sbjct: 162 HEA---ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 56.3 bits (137), Expect = 1e-10
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A I G + + ++++ G A+ + D +PLH A +S + LL GA+VN
Sbjct: 64 HEAAI---HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Score = 55.2 bits (134), Expect = 4e-10
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G V +L GA + D +TPL A + S LL GA V
Sbjct: 97 HEA---CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Score = 51.3 bits (124), Expect = 8e-09
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A + V +L +GA + + ++PLH + S + L+ FGA+
Sbjct: 195 YLA---CENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ 249
Score = 49.0 bits (118), Expect = 5e-08
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
HA V +EL ++ GA + K+ +G P+ + + + L GA +
Sbjct: 227 HAV---VRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281
Score = 48.6 bits (117), Expect = 7e-08
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A G + V +L GA+++ + D +P+H AA+ V +L+ +G ++
Sbjct: 130 FNA---CVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNID 184
Score = 45.6 bits (109), Expect = 8e-07
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ G ++ L + + +P+H AA + + L+ G VN
Sbjct: 32 DGSK---PAGPRDFPGIRLLSNPLMG-DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN 86
Score = 28.6 bits (65), Expect = 0.56
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 113 IAAQNNSVSVTQALLGFGAEVN 134
+ + ++ + L+ G+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 57.2 bits (138), Expect = 6e-11
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A + EL ILA + D D T LH A + + LL G VN
Sbjct: 12 NLA---YSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Score = 51.0 bits (122), Expect = 1e-08
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A + G E+V +L G + KD G +PLHIAA + +ALL GA VN
Sbjct: 45 HWA---CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Score = 45.6 bits (108), Expect = 8e-07
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + G E+V ++L GA + + +G TPLH AA N + LL GA +
Sbjct: 78 HIA---ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 136 S 136
Sbjct: 135 K 135
Score = 44.1 bits (104), Expect = 3e-06
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
AKG+ ++V +L A+ ++D +GNTPLH+A V + L+ GA +
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Score = 43.3 bits (102), Expect = 6e-06
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+K E+ + +L GA + KD T +H AA ++ + LL + A N
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Score = 40.2 bits (94), Expect = 5e-05
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 80 IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ + E ++ GA++ +++ + TPL +A + L G E ++
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL--GLILKRLAEGEEASM 231
Score = 39.1 bits (91), Expect = 2e-04
Identities = 2/29 (6%), Positives = 8/29 (27%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
++A + + +L +
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLAT 34
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 57.2 bits (139), Expect = 6e-11
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ +G+ +LV I+ L + +G T LH A + + L+ FG VN
Sbjct: 42 LDS---SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97
Score = 52.2 bits (126), Expect = 4e-09
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G E+V ++ G + D DG TPLH AA N+V V + L+ GA V
Sbjct: 75 HNAVC---AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Score = 47.2 bits (113), Expect = 2e-07
Identities = 6/66 (9%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
Q L ++ +A G ++ L ++ + Q ++
Sbjct: 6 QVSL---PPGKR---TNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIY 58
Query: 129 FGAEVN 134
+ +
Sbjct: 59 EVDDPS 64
Score = 45.3 bits (108), Expect = 1e-06
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ G L + N + G V
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK 32
Score = 42.6 bits (101), Expect = 9e-06
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELK---DGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
H A + + ++ ++ +GAA+ D + +Q L G +
Sbjct: 108 HCA---ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164
Query: 133 VNV 135
+ +
Sbjct: 165 MGI 167
Score = 35.3 bits (82), Expect = 0.003
Identities = 4/54 (7%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+G + + + + + L N + + G + +
Sbjct: 149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIH 199
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 55.9 bits (136), Expect = 6e-11
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
A+ A G+ E V +L GA + + + L +A+ + LL ++N+
Sbjct: 41 IWAS---AFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Score = 55.9 bits (136), Expect = 7e-11
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ V ++LA GA L + G TP+ +A V Q + ++
Sbjct: 112 GNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163
Score = 54.7 bits (133), Expect = 2e-10
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G ++V +L + + D +G TPL A + N V +ALL GA++
Sbjct: 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Score = 54.3 bits (132), Expect = 3e-10
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 84 KGDKELVLSILAAGAALE-LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+G+ + + L G L D G TPL A+ + + LL +GA+ ++
Sbjct: 12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Score = 36.6 bits (86), Expect = 7e-04
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 107 GNTPLHIAAQNNSVSVTQALLGFGA-EVN 134
+ +H A + + L G VN
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVN 30
Score = 26.6 bits (60), Expect = 2.4
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTP 110
A VA G +++ I L + P
Sbjct: 140 DLA---VALGYRKVQQVIENHILKLFQSNLVPADP 171
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 57.1 bits (139), Expect = 7e-11
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A +G E V S++A G ++ K TPL++A +N + + LL GA+VN
Sbjct: 106 HEA---ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 56.3 bits (137), Expect = 1e-10
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A I G + + ++++ G A+ + D +PLH A +S + LL GA+VN
Sbjct: 8 HEAAIH---GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Score = 54.7 bits (133), Expect = 5e-10
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G V +L GA + D +TPL A + S LL GA V
Sbjct: 41 HEA---CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A + V +L +GA + + ++PLH A+ S + L+ FGA+
Sbjct: 139 YLA---CENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQ 193
Score = 49.4 bits (119), Expect = 3e-08
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
HA +EL ++ GA + K+ +G P+ + + + Q L ++
Sbjct: 171 HAV---ARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL 225
Query: 136 SQI 138
Q+
Sbjct: 226 MQL 228
Score = 48.6 bits (117), Expect = 6e-08
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A G + V +L GA+++ + D +P+H AA+ V +L+ +G ++
Sbjct: 74 FNA---CVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNID 128
Score = 47.0 bits (113), Expect = 2e-07
Identities = 5/51 (9%), Positives = 11/51 (21%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAE 132
+ + L L L +T+ +L +
Sbjct: 205 LVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 40.9 bits (97), Expect = 4e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+P+H AA + + L+ G VN
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN 30
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 56.8 bits (138), Expect = 8e-11
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A E+V +++ GA +E++D G T L +A + + + FG + +
Sbjct: 116 HMA---AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172
Query: 136 SQI 138
++
Sbjct: 173 EKV 175
Score = 55.7 bits (135), Expect = 2e-10
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A K D++ LS L ++ D +G T L A S + L GA+++
Sbjct: 50 WTA---ARKADEQ-ALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Score = 51.8 bits (125), Expect = 5e-09
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDG-DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V + AGA L+ +D G T LH+AA V +AL+ GA++
Sbjct: 82 LFV---AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Score = 44.1 bits (105), Expect = 3e-06
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + A + + TP AA+ LL +V+
Sbjct: 25 DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVD 71
Score = 42.2 bits (100), Expect = 1e-05
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 2/62 (3%)
Query: 76 HAATIQVAKGDKELVLSIL--AAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
I + K L + A + K G G ++ + AE
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED 225
Query: 134 NV 135
Sbjct: 226 VA 227
Score = 38.7 bits (91), Expect = 2e-04
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G+G I ++ A+V
Sbjct: 11 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV 42
Score = 27.6 bits (62), Expect = 1.5
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 83 AKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSV 120
K + A KD + L A + +
Sbjct: 208 WKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESVI 243
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 56.7 bits (138), Expect = 8e-11
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
++ L HAA G ++ ++ AGA ++ D TPL AA+NN + + L+
Sbjct: 12 RSPL---HAAAE---AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 129 FGAEVN 134
GA V+
Sbjct: 66 AGALVD 71
Score = 55.1 bits (134), Expect = 3e-10
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
AT +LV +L+ G+ + ++D + N LH AA + V + + LL +++
Sbjct: 116 IWATE---YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171
Score = 54.0 bits (131), Expect = 7e-10
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G ++ +LAA L + G++PLHIAA+ N L ++V
Sbjct: 149 HWA---AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204
Score = 52.0 bits (126), Expect = 4e-09
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALL 127
T L H A KG E+V +L+ G + +D G TP+ A + V + + LL
Sbjct: 78 STCL---HLA---AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 128 GFGAEVN 134
G+++N
Sbjct: 132 SKGSDIN 138
Score = 51.3 bits (124), Expect = 6e-09
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
H A + + V+ L+ + + LK+ +G TPL A+ N+ V +
Sbjct: 182 HIA---ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 50.1 bits (121), Expect = 2e-08
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA-EVN 134
A E V ++ AGA ++ KD +G+T LH+AA+ V Q LL G +VN
Sbjct: 49 MEA---AENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Score = 46.3 bits (111), Expect = 5e-07
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 101 ELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+++ + +PLH AA+ V + L+ GA ++
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID 38
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 56.3 bits (137), Expect = 1e-10
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
++ L H A A + + + +L GA ++++ TPL +AA+ S + LL
Sbjct: 158 KSAL---HWA---AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Query: 129 FGAEVN 134
A +
Sbjct: 212 HFANRD 217
Score = 54.0 bits (131), Expect = 8e-10
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
T L A + ++ ++ + A + D G + LH AA N+V LL
Sbjct: 125 TTPL---ILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 129 FGAEVN 134
GA +
Sbjct: 179 NGANKD 184
Score = 50.5 bits (122), Expect = 1e-08
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALL 127
+T L HAA V+ + + ++ A L+ + DG TPL +AA+ + + L+
Sbjct: 91 RTPL---HAA---VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 128 GFGAEVN 134
A+VN
Sbjct: 145 NSHADVN 151
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 84 KGDKELVLSILAAGAALE-LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ ++ + GA+L D G T LH+AA+ + + LL A+ N
Sbjct: 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84
Score = 48.2 bits (116), Expect = 1e-07
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
+ +L A A ++D G TPLH A ++ V Q L+ A
Sbjct: 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 46.7 bits (112), Expect = 3e-07
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G E +L A ++ D P IA + + + L +
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 13/45 (28%)
Query: 103 KDGDGNTPLHIAAQN-------------NSVSVTQALLGFGAEVN 134
+ DG TPL IA+ + ++ +V + GA ++
Sbjct: 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH 50
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 55.1 bits (134), Expect = 1e-10
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A G + V ++A GA + +D G TPLH+AA N + + + LL GA+VN
Sbjct: 19 LEA---ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Score = 53.9 bits (131), Expect = 4e-10
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A + G E+V +L GA + D +G+TPLH+AA + + + LL GA+VN
Sbjct: 85 RLAAL---FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Score = 53.5 bits (130), Expect = 5e-10
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G E+V +L GA + D G TPL +AA + + + LL GA+VN
Sbjct: 52 HLA---AFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Score = 47.4 bits (114), Expect = 1e-07
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 97 GAALELKDG-DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G+ G D L AA+ + L+ GA+VN
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN 41
Score = 44.7 bits (107), Expect = 1e-06
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
H A + G E+V +L GA + +D G T I+ N + + + L
Sbjct: 118 HLAAM---FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 55.1 bits (134), Expect = 2e-10
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + G +++V +L A + + GN PLH A V + L+ GA V++
Sbjct: 77 HLA---ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Score = 53.6 bits (130), Expect = 6e-10
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G +V ++ GA + + + +TPLH+AA + + Q LL + A++N
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Score = 53.2 bits (129), Expect = 9e-10
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+G+ V L L D G +PLH A + +V + L+ GA +N
Sbjct: 10 FTQ---CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 135 V 135
V
Sbjct: 67 V 67
Score = 52.0 bits (126), Expect = 2e-09
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G ++ ++A GA + + + G P+ A + + G +N
Sbjct: 110 HYACF---WGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 39.3 bits (93), Expect = 1e-04
Identities = 2/32 (6%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGA-EVN 134
+ + + + + L ++N
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLN 33
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 56.3 bits (137), Expect = 2e-10
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
AA + +++L+ + DG +TPLH+AA N V + Q LL GA+V+
Sbjct: 30 EAA---RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Score = 56.3 bits (137), Expect = 2e-10
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A + K++ +L GA + K+ D TPLH+AA+ V + L GA++N
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274
Score = 56.0 bits (136), Expect = 3e-10
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A +V +L GA + KD G PLH A VT+ LL GA VN
Sbjct: 63 HLA---AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118
Score = 54.4 bits (132), Expect = 8e-10
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A + G E+ +L GA + D TPLH AA N V V LL GA+
Sbjct: 96 HNA---CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Score = 54.0 bits (131), Expect = 1e-09
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + +++ + GA + D G T LH AA + + LL +G++ ++
Sbjct: 252 HVAAE---RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN---NSVSVTQALLGFGAE 132
AA + D V LA + T LH A + V + LL GA
Sbjct: 184 QAA----READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
Query: 133 VNV 135
VN
Sbjct: 240 VNE 242
Score = 47.5 bits (114), Expect = 2e-07
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A +K E+ +L+ GA L + G + + +A + +
Sbjct: 129 HEA---ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185
Query: 136 SQ 137
++
Sbjct: 186 AR 187
Score = 42.1 bits (100), Expect = 1e-05
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 86 DKELVLSILAAGAALELKDGDGNTPLHIAA-QNNSVSVTQALLGFGAEVN 134
+ L + A L L AA N + L +
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCH 52
Score = 41.3 bits (98), Expect = 3e-05
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
QT L H A G + +L+ G+ + G T + + Q +L
Sbjct: 281 QTAL---HRA---ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAV-----QQILS 329
Query: 129 FGAEVN 134
+
Sbjct: 330 ESTPMR 335
Score = 28.2 bits (64), Expect = 0.81
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNN 118
E V IL+ + D D L A++
Sbjct: 321 NEAVQQILSESTPMRTSDVDY--RLLEASKAG 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 56.4 bits (137), Expect = 2e-10
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A KG + V ++ G + +++ G T LH+A + V + L G +
Sbjct: 25 HVA---ARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80
Score = 53.7 bits (130), Expect = 1e-09
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
AA +E++ + + G + + +V + L A V
Sbjct: 295 PAA---ADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVR 350
Score = 53.3 bits (129), Expect = 2e-09
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 76 HAATIQVAKGDKELV-----LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
A + ++E + + L+ + GN+ LH A N V + G
Sbjct: 178 MRA---MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234
Query: 131 AEVN 134
+VN
Sbjct: 235 IDVN 238
Score = 52.6 bits (127), Expect = 4e-09
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + +++ + + G + ++D + PL+++ + V +T+ LL +
Sbjct: 216 HWAIL---INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272
Query: 136 SQIPY 140
PY
Sbjct: 273 QACPY 277
Score = 47.9 bits (115), Expect = 1e-07
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGF-----G 130
H + E++ ++ GA+ KD TPL A + + ++
Sbjct: 143 HWCV-GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201
Query: 131 AEVN 134
++
Sbjct: 202 LRLD 205
Score = 47.2 bits (113), Expect = 3e-07
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
D + +H+AA+ + L+ G +
Sbjct: 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTI 48
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G + + + G G P+H+A N + AL+ E
Sbjct: 58 HLA---CKFGCVDTAKYLASVGE--VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111
Score = 42.9 bits (102), Expect = 8e-06
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G + + AA + V Q L EV
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318
Score = 42.2 bits (100), Expect = 2e-05
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 96 AGAALELKDGDGNTPLHIAAQ--NNSVSVTQALLGFGAEVN 134
+K G T LH + + + L+ GA
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167
Score = 32.1 bits (74), Expect = 0.038
Identities = 4/39 (10%), Positives = 9/39 (23%), Gaps = 3/39 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIA 114
K + LA A + + ++
Sbjct: 328 VKRKK---KAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 32.1 bits (74), Expect = 0.041
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 12/57 (21%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQA 125
Q + H A V +LV++++ G P + + + V +
Sbjct: 85 QKPI---HLA---VMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEI 129
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 53.5 bits (130), Expect = 2e-10
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+V +LA GA + + DGNTP H+A +N + + L GA+VN
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 53.5 bits (130), Expect = 2e-10
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G E V +L+ GA + + DGNTPLH+AA+N + + LL GA+VN
Sbjct: 14 HNA---AKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Score = 46.6 bits (112), Expect = 9e-08
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G DGNTPLH AA+N + LL GA+VN
Sbjct: 1 GH--MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN 36
Score = 28.9 bits (66), Expect = 0.26
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLH 112
H A G E+V + A GA + + + H
Sbjct: 80 HLAKK---NGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 56.2 bits (135), Expect = 2e-10
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ + E + L +D +G+T L+IAA+ ++S+ ALL +GA+ +
Sbjct: 252 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 311
Score = 46.6 bits (110), Expect = 4e-07
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 65 QHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELK-DGDGNTPLHIAAQNNSVSVT 123
+ + +E+ + L + D GNTPLH ++ +
Sbjct: 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV 147
Query: 124 QALLGFGAEVNV 135
+ L+ G+
Sbjct: 148 KHLVKHGSNRLY 159
Score = 39.2 bits (91), Expect = 2e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNN 118
H + + ELV ++ G+ D G + L A ++
Sbjct: 136 HWL---TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175
Score = 38.9 bits (90), Expect = 2e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN 117
+ A G+ +V ++L GA + + G P+ A
Sbjct: 288 NIA---ARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 36.5 bits (84), Expect = 0.001
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
++ L + G E +L L L L+D T LH + ++ A
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYL--YPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222
Query: 129 FGAEVNVSQI 138
+ ++ + I
Sbjct: 223 YYLDILMGWI 232
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 55.6 bits (135), Expect = 3e-10
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 79 TIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ K L + D G++ + A +N+V + LL GA N+
Sbjct: 3 DLSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59
Score = 55.6 bits (135), Expect = 3e-10
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A D ++V +L +G D GNT L+ A + ++ + + +
Sbjct: 67 HQA---ATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF 123
Score = 52.5 bits (127), Expect = 3e-09
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A V D +V L+ + + +HI +N V + LL + N
Sbjct: 134 YHA---VMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188
Score = 52.1 bits (126), Expect = 5e-09
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A +A + LV ++L AGA L + + PLH AA + + LL G + +
Sbjct: 36 YYA---IADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLDDS 89
Score = 50.6 bits (122), Expect = 2e-08
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTP-LHIAAQNNSVSVTQALLGFGAEVN 134
H + G ++++ +L + + P + +A N + + QAL + +
Sbjct: 166 HIT---IKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222
Score = 46.4 bits (111), Expect = 5e-07
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDG-NTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A V G+ + V + L G T + A N VS+ L
Sbjct: 100 YYA---VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156
Score = 40.6 bits (96), Expect = 5e-05
Identities = 4/60 (6%), Positives = 16/60 (26%), Gaps = 10/60 (16%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
A + D E++ ++ + + + + + ++ E
Sbjct: 200 KLA---IDNKDIEMLQALFKYDI-------NIYSANLENVLLDDAEIAKMIIEKHVEYKS 249
Score = 35.6 bits (83), Expect = 0.003
Identities = 4/48 (8%), Positives = 12/48 (25%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
D E+ I+ + + + + + + L
Sbjct: 231 LDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMY 278
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 53.6 bits (130), Expect = 3e-10
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 96 AGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ + G + L AA V + LL GA+ N
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN 39
Score = 52.4 bits (127), Expect = 9e-10
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNT-PLHIAAQNNSVSVTQALLGFGAEVN 134
G ++ +L GA D T P+H AA+ + L GA ++
Sbjct: 50 QVM----MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Query: 135 V 135
V
Sbjct: 106 V 106
Score = 51.7 bits (125), Expect = 1e-09
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
A A+G E V +L AGA + G P+ + + V + LL GAE N
Sbjct: 17 ATA---AARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNC 72
Score = 51.7 bits (125), Expect = 2e-09
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
H A +G + ++ + AGA L++ D G P+ +A + + + L
Sbjct: 83 HDA---AREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 53.5 bits (130), Expect = 3e-10
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A G + V ++A GA + KD G TPL++A + + + + LL GA+VN
Sbjct: 19 LEA---ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Score = 51.2 bits (124), Expect = 2e-09
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A A G E+V +L GA + D G TPLH+AA + + + LL GA+VN
Sbjct: 52 YLA---TAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Score = 46.2 bits (111), Expect = 2e-07
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 97 GAALELKDG-DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G+ G D L AA+ + L+ GA+VN
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVN 41
Score = 43.1 bits (103), Expect = 2e-06
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
T L H A G E+ +L GA + +D G T I+ N + + + L
Sbjct: 81 FTPL---HLA---AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 55.2 bits (134), Expect = 4e-10
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A V +++V +L GA L+ +G TP +AA SV + + L GA+VN
Sbjct: 44 HNA---VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100
Score = 54.0 bits (131), Expect = 1e-09
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A G +L+ L+ GA + D G T AA V + L GA VN
Sbjct: 77 LLA---AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGD-GNTPLHIAAQNNSVSVTQALL 127
+L A D +LV +L GA + ++ + G TPLH A Q + + + LL
Sbjct: 6 NHLL---IKAVQ---NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 128 GFGAEVN 134
GA+
Sbjct: 60 RHGADPV 66
Score = 53.2 bits (129), Expect = 2e-09
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELV-LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A V K LV + + D DG T L +A + + + L GA +
Sbjct: 224 ILA---VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 50.9 bits (123), Expect = 1e-08
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
+ L + A + + +L GA + ++ G TPL +A + + + Q LL
Sbjct: 183 RNALIH--ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 129 -FGAEVN 134
E+N
Sbjct: 241 QEHIEIN 247
Score = 47.9 bits (115), Expect = 2e-07
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 69 QTVLQYTHAATIQVAKGDKELV-LSILAAGAALELKDGDGNTPLHIAAQNNSVS----VT 123
T L A KG E++ + + GA + D G L A ++ S +T
Sbjct: 149 ATAL---MDAAE---KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202
Query: 124 QALLGFGAEVNV 135
LL GA+VNV
Sbjct: 203 HLLLDHGADVNV 214
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ N L A QN V + Q LL GA VN
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVN 32
Score = 43.2 bits (103), Expect = 5e-06
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 14/70 (20%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGD----------GNTPLHIAAQNNSVSVTQA 125
A G + + + GA + L+ G T L AA+ V V +
Sbjct: 110 MEA---AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 126 LLG-FGAEVN 134
LL GA+VN
Sbjct: 167 LLDEMGADVN 176
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 54.6 bits (132), Expect = 4e-10
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
HAA KG ++V +LA GA +L++ + +A S+ + G A
Sbjct: 145 HAA---AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200
Score = 53.8 bits (130), Expect = 9e-10
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG-FGAEVN 134
H A +G+ + L + D G+T L+ A + + L E+N
Sbjct: 78 HEA---AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134
Query: 135 V 135
Sbjct: 135 Q 135
Score = 50.7 bits (122), Expect = 1e-08
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 76 HAATIQVAKGDKELV-LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ A G K++V + L ++ G+T LH AA + Q LL GA +
Sbjct: 111 YWA---CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Query: 135 V 135
+
Sbjct: 168 L 168
Score = 46.5 bits (111), Expect = 3e-07
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
KG L+ + + + PLH AA+ ++S + L VN
Sbjct: 55 KGRTGLI-----PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG 101
Score = 38.0 bits (89), Expect = 3e-04
Identities = 2/59 (3%), Positives = 10/59 (16%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A + + + + +T + + +
Sbjct: 17 FRA---LYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
Score = 37.2 bits (87), Expect = 6e-04
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 3/42 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN 117
AT L+ A L + + +
Sbjct: 178 DMAT---NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
Score = 36.5 bits (85), Expect = 0.001
Identities = 3/29 (10%), Positives = 6/29 (20%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + A L ++
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDII 39
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 53.5 bits (130), Expect = 5e-10
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A GD E V + + +G +TPLH AA N VSV + LL GA+V+
Sbjct: 13 LEA---AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Score = 52.4 bits (127), Expect = 1e-09
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A +V +L GA + KD G PLH A V + L+ GA VNV
Sbjct: 47 HFAAG---YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Score = 51.2 bits (124), Expect = 4e-09
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G E+ ++ GA + + D TPLH AA + + LL GA+
Sbjct: 80 HNACS---YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135
Score = 42.0 bits (100), Expect = 8e-06
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
H A AKG E+ +L GA K+ DGNTPL + + + L G A
Sbjct: 113 HEA---AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 38.1 bits (90), Expect = 2e-04
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ + + L AA+ V + L + VN
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNC 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 54.0 bits (131), Expect = 6e-10
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
++ L H A A + + + +L GA ++++ TPL +AA+ S + LL
Sbjct: 126 KSAL---HWA---AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Query: 129 FGAEVN 134
A +
Sbjct: 180 HFANRD 185
Score = 54.0 bits (131), Expect = 8e-10
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
T L A + ++ ++ + A + D G + LH AA N+V LL
Sbjct: 93 TTPL---ILAAR---LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 129 FGAEVN 134
GA +
Sbjct: 147 NGANKD 152
Score = 49.7 bits (120), Expect = 3e-08
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALL 127
+T L HAA V+ + + ++ A L+ + DG TPL +AA+ + + L+
Sbjct: 59 RTPL---HAA---VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112
Query: 128 GFGAEVN 134
A+VN
Sbjct: 113 NSHADVN 119
Score = 48.6 bits (117), Expect = 6e-08
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
+T L A +G E +L A ++ D P IA + + + L
Sbjct: 159 ETPL---FLAAR---EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Query: 129 FGAEVN 134
+ +
Sbjct: 213 YNLVRS 218
Score = 47.8 bits (115), Expect = 1e-07
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
H A + +L A A ++D G TPLH A ++ V Q L+ A
Sbjct: 30 HLA---ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Score = 47.8 bits (115), Expect = 1e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 85 GDKELVLSILAAGAALE-LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
++ + GA+L D G T LH+AA+ + + LL A+ N
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 52
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 52.2 bits (126), Expect = 6e-10
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
A G + V ++A GA + KD +G+TPLH+AA+N + V + LL GA+V
Sbjct: 29 LEAA---RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 47.6 bits (114), Expect = 3e-08
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
++ G+ D L AA+ + L+ GA+V
Sbjct: 4 HHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVA 51
Score = 32.2 bits (74), Expect = 0.017
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
G E+V +L AGA + +D G T I+ N + + + L
Sbjct: 67 NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 27.5 bits (62), Expect = 0.79
Identities = 2/21 (9%), Positives = 9/21 (42%)
Query: 114 AAQNNSVSVTQALLGFGAEVN 134
+ ++ + L+ G+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG 21
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 53.5 bits (130), Expect = 6e-10
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
+T L A + G + + ++ LE KD +G+T L A +NN + + + LL
Sbjct: 36 RTPL---MVACM---LGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89
Query: 129 FGAEVN 134
G+ VN
Sbjct: 90 KGSNVN 95
Score = 52.0 bits (126), Expect = 3e-09
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
T L A V + +L+ G+ + KD G TPL + ++ LL
Sbjct: 69 STAL---IWA---VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 129 FGAEVN 134
GA VN
Sbjct: 123 HGANVN 128
Score = 49.7 bits (120), Expect = 2e-08
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
+T L + + G E+ +L GA + ++ +G TPL +A++ + + LL
Sbjct: 102 KTPLMW--SI----IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 129 FGAEVN 134
GA+++
Sbjct: 156 LGADIS 161
Score = 47.4 bits (114), Expect = 1e-07
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 85 GDKELVLSILA-------AGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ E+V I +D TPL +A + L+ ++
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE 62
Score = 43.1 bits (103), Expect = 5e-06
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
+T L A+ G E+V +L GA + +D G T A V +
Sbjct: 135 ETPL---IVASK---YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 29.3 bits (67), Expect = 0.27
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 103 KDGDGNTPLHIAAQNNS 119
D +G I + +
Sbjct: 4 MDKNGEIVEKIKDEKSI 20
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 52.8 bits (128), Expect = 7e-10
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
+T L H A ++G +V +L GA + KD T LH A ++N V + L+
Sbjct: 68 RTPL---HMA---ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 129 FGAEVN 134
+GA+V+
Sbjct: 122 YGADVH 127
Score = 51.6 bits (125), Expect = 2e-09
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A G +L AG + + + TPLH+AA ++ + LL GA+VN
Sbjct: 39 HLAAQ---YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94
Score = 51.2 bits (124), Expect = 3e-09
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G + V ++A GA D G +PLH+AAQ S T+ LL G +
Sbjct: 12 AGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Score = 43.5 bits (104), Expect = 2e-06
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
D L AA+ + L+ GA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT 29
Score = 42.0 bits (100), Expect = 7e-06
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
T L H A +E+V ++ GA + + T I+ N + + + L
Sbjct: 101 MTAL---HWA---TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 54.0 bits (131), Expect = 8e-10
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSIL-AAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
L H A + + + V +L + + L KD DG PLH + + +T LL
Sbjct: 3 NYPL---HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 56
Query: 128 GFGAEVNV 135
VN+
Sbjct: 57 SKMENVNL 64
Score = 52.4 bits (127), Expect = 3e-09
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 76 HAATIQVAKGDKELV--LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
H A + G+ E+V L L G T LH+A V+Q L+ GA V
Sbjct: 77 HIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV 133
Query: 134 N 134
Sbjct: 134 R 134
Score = 47.8 bits (115), Expect = 1e-07
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSVSVTQALL 127
Q L H A + G +L+ + G + + +D G TPL A L+
Sbjct: 141 QIPL---HRA---ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Query: 128 GF-GAEVN 134
GAE +
Sbjct: 195 EKYGAEYD 202
Score = 47.4 bits (114), Expect = 2e-07
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFG-AEVN 134
H A K E+ ++ GA++ +KD PLH AA S+ + + L G G + VN
Sbjct: 112 HLAVG---KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 76 HAATIQVAKGDKELVLSILAAGA---ALELKDGDGNTPLHIAAQNNSVSVTQALL--GFG 130
H + V+ E+ +L+ + D G TP HIA ++ V ++L
Sbjct: 41 HWS---VSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
Query: 131 AEVN 134
++N
Sbjct: 98 PDLN 101
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 76 HAATIQVAKGDKELV-LSILAAGAALELKDGDGNTPLHIAAQNNSV 120
A +A+G + L + GA +L D G +A
Sbjct: 179 FHA---LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVK 221
Score = 37.8 bits (89), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 107 GNTPLHIAAQNNSVS-VTQALLGFGAEVN 134
N PLH A N V + L + +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLL 30
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 53.6 bits (130), Expect = 1e-09
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 69 QTVLQYTHAATIQVAKGDKE----LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQ 124
T L H A + +G+ LV G L++ + TPLH+A SV +
Sbjct: 10 DTPL---HIAVV---QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 125 ALLGFGAEVN 134
L+ GA
Sbjct: 64 LLVTAGASPM 73
Score = 53.6 bits (130), Expect = 1e-09
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDG-DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
H A V +E V +L GA ++ D G +PL A +NNS+S+ Q LL GA VN
Sbjct: 121 HVA---VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Score = 53.2 bits (129), Expect = 1e-09
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
A V +V +L GA + + G++ LH A+ + + + L+ GA+ +
Sbjct: 155 IHA---VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210
Score = 52.8 bits (128), Expect = 2e-09
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
QT L H A V +V ++ AGA+ D G T H+A ++ S + +ALL
Sbjct: 47 QTPL---HLA---VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD 100
Query: 129 FGAEVNV 135
A +
Sbjct: 101 SAAPGTL 107
Score = 51.3 bits (124), Expect = 7e-09
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALEL----KDGDGNTPLHIAAQNNSVSVTQ 124
QT H A + ++L + A L ++ DG T LH+A Q
Sbjct: 80 QTAA---HLA---CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133
Query: 125 ALLGFGAEVN 134
LL GA+++
Sbjct: 134 LLLERGADID 143
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
H+A +G LV +++ +GA LK+ +TPL +A + + + A
Sbjct: 188 HSA---SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 43.2 bits (103), Expect = 6e-06
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGF----GAEVN 134
D DG+TPLHIA ++ L+ G E++
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD 40
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 53.8 bits (130), Expect = 1e-09
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 76 HAATIQVAKGDKELV---LSILAAGAALELKDGDGNTPLHIAAQNNS---VSVTQALLGF 129
H A A D ++ L+ +E D +G T L I A N V+ + L+
Sbjct: 204 HQA---AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260
Query: 130 GAEVNVSQ 137
GA+V+
Sbjct: 261 GAKVDYDG 268
Score = 53.0 bits (128), Expect = 3e-09
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELV-LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
+T L H A + +V + G+ + +D DG TP+ +AAQ + V L+
Sbjct: 280 RTAL---HYA---AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 333
Query: 128 GFGAEVN 134
GA V
Sbjct: 334 QQGASVE 340
Score = 52.6 bits (127), Expect = 4e-09
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 69 QTVLQYTHAATIQVAKGDKELV--------LSILAAGAALELKDGDGNTPLHIAAQNNSV 120
+TVL H + E +AAGA + D D NTPL +A
Sbjct: 126 RTVL---HWI---ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179
Query: 121 SVTQALLGFGAEVN 134
+ L+ GA+
Sbjct: 180 RLVAYLMKAGADPT 193
Score = 50.7 bits (122), Expect = 1e-08
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL---GFGAE 132
A V + LV ++ AGA + + + LH AA N + +L +
Sbjct: 171 MLA---VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227
Query: 133 VN 134
+
Sbjct: 228 IE 229
Score = 50.3 bits (121), Expect = 2e-08
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
A +G E+V+ ++ GA++E D +T +A NN ++ E
Sbjct: 318 MLA---AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 48.8 bits (117), Expect = 8e-08
Identities = 8/70 (11%), Positives = 17/70 (24%), Gaps = 7/70 (10%)
Query: 65 QHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQ 124
QH G+ L + + LH A + ++T+
Sbjct: 58 QHYSLYPN---PQG---YGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS-YAITE 110
Query: 125 ALLGFGAEVN 134
+ +
Sbjct: 111 PITRESVNII 120
Score = 46.9 bits (112), Expect = 3e-07
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G + I + T LH A N+S ++ L+ A+ +
Sbjct: 99 HTE----AAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 153
Query: 136 SQ 137
+
Sbjct: 154 AA 155
Score = 44.9 bits (107), Expect = 1e-06
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 94 LAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG-FGAEVN 134
A + + G T LH AAQ +++ + + L+G G+ +
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 307
Score = 41.5 bits (98), Expect = 3e-05
Identities = 2/33 (6%), Positives = 4/33 (12%)
Query: 102 LKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
P N + +
Sbjct: 56 ELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT 88
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 53.2 bits (128), Expect = 2e-09
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALEL-----------KDGDGNTPLHIAAQNNSVSVTQ 124
A + + G + + +L + G T LHIA + ++++
Sbjct: 59 LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118
Query: 125 ALLGFGAEVN 134
L+ GA+V
Sbjct: 119 LLVENGADVQ 128
Score = 44.0 bits (104), Expect = 4e-06
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
L + E+ + G TPL +AA + + V +L
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Score = 38.6 bits (90), Expect = 2e-04
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 82 VAKGDKELVLSIL-------AAGAALELKDGD-GNTPLHIA---AQNNSVSVTQALLGFG 130
VA+ + + + S+L E KD + G T L A N LL
Sbjct: 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80
Query: 131 AEVNV 135
+ +
Sbjct: 81 RKTDS 85
Score = 37.8 bits (88), Expect = 4e-04
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGD--------------GNTPLHIA 114
QT L H A + + + LV ++ GA ++ G PL +A
Sbjct: 102 QTAL---HIA---IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155
Query: 115 AQNNSVSVTQALLGFG---AEVN 134
A N +++ + LL A+++
Sbjct: 156 ACTNQLAIVKFLLQNSWQPADIS 178
Score = 37.5 bits (87), Expect = 6e-04
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 9/85 (10%)
Query: 46 DSHLRAYTGYGINTLLWYMQHEPQTVLQYTHAATIQVAKGDKELV---LSILAAGAALEL 102
D A + T + + L A +V L A +
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPL---SLA---ACTNQLAIVKFLLQNSWQPADISA 179
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALL 127
+D GNT LH + +V
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKF 204
Score = 31.7 bits (72), Expect = 0.064
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 103 KDGDGNTPLHIAAQNN 118
++ H AA ++
Sbjct: 255 REIHEPECRHAAAHHH 270
Score = 28.2 bits (63), Expect = 0.88
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 95 AAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGF-------GAEVNVS 136
+ A + + A ++ ++LL F +
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK 49
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 52.9 bits (127), Expect = 2e-09
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 38 YLTSLPRPDSHLRAYTGYGINTLLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAG 97
YL P + L A G NT+L + + + A I + G ++ +
Sbjct: 154 YLLENPHQPASLEATDSLG-NTVLHALVMIADNSPENS-ALVIHMYDGLLQMGARLCPTV 211
Query: 98 AALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
E+ + G TPL +AA+ + + + +L
Sbjct: 212 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 48.2 bits (115), Expect = 1e-07
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 76 HAATIQVAKGDKELVLSILAAG-----------AALELKDGDGNTPLHIAAQNNSVSVTQ 124
A + + G ++ +L A + G++ LHIA + S+ +
Sbjct: 48 MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107
Query: 125 ALLGFGAEVN 134
L+ GA+V+
Sbjct: 108 LLVENGADVH 117
Score = 42.1 bits (99), Expect = 1e-05
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ + N+ L I + + + L +
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI 216
Score = 40.5 bits (95), Expect = 6e-05
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 19/75 (25%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKD-------------GDGNTPLHIAAQNNSVSV 122
H A + K + V ++ GA + L+ G PL +AA V
Sbjct: 95 HIA---IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 123 TQALLGFG---AEVN 134
LL A +
Sbjct: 152 VTYLLENPHQPASLE 166
Score = 37.5 bits (87), Expect = 6e-04
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 82 VAKGDKELVLSILA--------AGAALELKDGDGNTPLHIAA---QNNSVSVTQALLGFG 130
V++G E + +L + + G T L A Q+ + LL
Sbjct: 10 VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69
Query: 131 AEVNVSQI 138
+ +
Sbjct: 70 KDSGNPKP 77
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 50.1 bits (120), Expect = 1e-08
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 91 LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
L +G L +KD G T L + + + + + N+
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 46.2 bits (110), Expect = 3e-07
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVT------QALLGF 129
+ ++ + ++ GA ++ + +G T Q +T + L
Sbjct: 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103
Query: 130 GAEVNV 135
GA++
Sbjct: 104 GADITA 109
Score = 41.2 bits (97), Expect = 3e-05
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 7/59 (11%)
Query: 84 KGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQA-------LLGFGAEVNV 135
G EL L GA + + N V + G ++ +
Sbjct: 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149
Score = 39.3 bits (92), Expect = 1e-04
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS----VSVTQALLGFGA 131
AA G E L + G + + + L+ +NN+ ++ L+ GA
Sbjct: 11 SAA---AMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 132 EVNV 135
++
Sbjct: 67 DIKS 70
Score = 31.6 bits (72), Expect = 0.056
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ AA + L G E
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKE 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 50.3 bits (121), Expect = 2e-08
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 69 QTVLQYTHAATIQ----VAKGDKELVLSILA---AGAALELKDGDGNTPLHIAAQNNSVS 121
TVL H +Q A L+LS + + + G TP +A ++
Sbjct: 155 NTVL---HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV 211
Query: 122 VTQALLGFGAEVN 134
+ Q L+ +
Sbjct: 212 MFQHLMQKRKHIA 224
Score = 50.3 bits (121), Expect = 2e-08
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALEL-----KDGDGNTPLHIAAQNNSVSVT 123
+T L H A + E + ++ A L + +G T LHIA N +V++
Sbjct: 38 ETAL---HIA---ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 124 QALLGFGAEVN 134
+ALL GA V+
Sbjct: 92 RALLARGASVS 102
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSIL-AAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
++ L A + D + + +L G + + G T LHIAA +++ L+
Sbjct: 4 ESPL---LLA---AKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57
Query: 128 GFGAEVNVS 136
E+
Sbjct: 58 EAAPELVFE 66
Score = 47.2 bits (113), Expect = 2e-07
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS----VSVTQALLGFGA 131
A G +E+V ++ GA + +D GNT LHI + + LL +
Sbjct: 126 SFA---ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 132 EVN 134
+
Sbjct: 183 GDH 185
Score = 43.7 bits (104), Expect = 3e-06
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGD-------------GNTPLHIAA 115
QT L H A V + LV ++LA GA++ + G PL AA
Sbjct: 76 QTAL---HIA---VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 116 QNNSVSVTQALLGFGAEVN 134
S + + L+ GA++
Sbjct: 130 CVGSEEIVRLLIEHGADIR 148
Score = 35.7 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 107 GNTPLHIAAQNNSV-SVTQALLGFGAEVN 134
+PL +AA+ N V ++++ L G EV+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVH 31
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 49.8 bits (119), Expect = 3e-08
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALEL-----------KDGDGNTPLHIAAQNNSVSVTQ 124
A + ++ G + + +L G T LHIA + +
Sbjct: 51 PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE 110
Query: 125 ALLGFGAEVN 134
L+ GA+V+
Sbjct: 111 LLVEKGADVH 120
Score = 42.5 bits (100), Expect = 1e-05
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 16/79 (20%)
Query: 69 QTVLQYTHAATIQ------VAKGDKELVLSILAAGAAL-------ELKDGDGNTPLHIAA 115
TVL HA K ++ +L A L L + DG +PL +AA
Sbjct: 177 NTVL---HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233
Query: 116 QNNSVSVTQALLGFGAEVN 134
+ + + Q ++
Sbjct: 234 KTGKIGIFQHIIRREIADA 252
Score = 39.4 bits (92), Expect = 1e-04
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 23/83 (27%)
Query: 69 QTVLQYTHAATIQVAKGDKELVLSILAAGAALELKD--------------GDGNTPLHIA 114
QT L H A + + K V ++ GA + + G PL +A
Sbjct: 94 QTAL---HIA---IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147
Query: 115 AQNNSVSVTQALLGFG---AEVN 134
A N + L G A++
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLR 170
Score = 33.6 bits (77), Expect = 0.013
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 82 VAKGDKELVLSI----LAAGAALELKDG----DGNTPLHIAAQNNS---VSVTQALLGFG 130
V++G + + + L L ++ G T L A N S LL
Sbjct: 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72
Query: 131 AEVN 134
+
Sbjct: 73 EKTG 76
Score = 33.2 bits (76), Expect = 0.016
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 82 VAKGDKELVLSILAAG---AALELKDGDGNTPLHIAA--QNNS-------VSVTQALLGF 129
+V + G A L +D GNT LH +N+ + LL
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207
Query: 130 GAEVN 134
A++
Sbjct: 208 CAKLF 212
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 46.1 bits (109), Expect = 7e-07
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A V + +V ++ L+ + G G+T LH ++ + LL A + +
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233
Score = 35.0 bits (80), Expect = 0.004
Identities = 13/68 (19%), Positives = 27/68 (39%)
Query: 60 LLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
L+ + + + + A + E + +L A++E+ + G TPL IA +
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250
Query: 120 VSVTQALL 127
+ L
Sbjct: 251 EHCEELLT 258
Score = 31.9 bits (72), Expect = 0.043
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 63 YMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELK------DGDGNTPLHIA-- 114
Y + + H+ V D +L A G L K T LH+A
Sbjct: 119 YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVR 178
Query: 115 -AQNNSVSVTQALLGFGAEVNV 135
S+ + L+ ++
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDK 200
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 46.1 bits (109), Expect = 8e-07
Identities = 7/51 (13%), Positives = 20/51 (39%)
Query: 88 ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
+ + +L + +++ + +AA+N + V L ++ I
Sbjct: 109 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159
Score = 44.6 bits (105), Expect = 2e-06
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 91 LSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+ + A A GD N L +A + + LL + + +++
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349
Score = 36.1 bits (83), Expect = 0.002
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 94 LAAGAALELKD--GDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
+ + +AA+N + V L + I
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 194
Score = 28.4 bits (63), Expect = 0.86
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
L + A ++ + A +V LL + ++I
Sbjct: 180 NRL-CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 230
Score = 27.2 bits (60), Expect = 2.2
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
A G++ +L+ + L L +I + + L
Sbjct: 324 RLAL---RLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLRAVAL 369
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 44.6 bits (105), Expect = 2e-06
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + LV I+ G L+ K DGNT LH AA N + LL A V
Sbjct: 195 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 254
Score = 34.2 bits (78), Expect = 0.008
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 60 LLWYMQ------HEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHI 113
++ + T L H A + + + +L A + + G T L I
Sbjct: 212 IIQNGGHLDAKAADGNTAL---HYAAL---YNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 114 AAQNNSVSVTQAL 126
A + + + L
Sbjct: 266 ARKKHHKECEELL 278
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 18/76 (23%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDH--AYLTSLPRPDSHLRAYTGYGIN 58
MH ++ +E ++N ITW D + + TG ++
Sbjct: 80 MHSLIGL------GSD---DELLTNSITWADNCAKSIVQDAKNRG-FAQQIYRKTGMPMH 129
Query: 59 T------LLWYMQHEP 68
LLW +
Sbjct: 130 PMAPIYKLLWLKNKKT 145
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 38.6 bits (89), Expect = 3e-04
Identities = 13/61 (21%), Positives = 18/61 (29%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
A +L GA + D G PLH A + L GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 136 S 136
Sbjct: 297 R 297
Score = 33.6 bits (76), Expect = 0.016
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 63 YMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDG--DGNTPLHIAAQNNSV 120
+ ++ + LA GA + +G D TPL A NS+
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL 248
Query: 121 SVTQALLGFGAEVNV 135
+ LL GA VN
Sbjct: 249 LACEFLLQNGANVNQ 263
Score = 30.5 bits (68), Expect = 0.14
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
G L L GA L +D +G PL IA + +
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 37.6 bits (87), Expect = 6e-04
Identities = 21/61 (34%), Positives = 25/61 (40%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A + LV I+ G L+ K DGNT LH AA N + LL A V
Sbjct: 176 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT 235
Query: 136 S 136
Sbjct: 236 V 236
Score = 35.3 bits (81), Expect = 0.004
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 82 VAKGDKELVLSILAAGAALELK------DGDGNTPLHIAAQN---NSVSVTQALLGFGAE 132
+ D VL A G LH+A + S+ + ++ G
Sbjct: 140 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 199
Query: 133 VNV 135
++
Sbjct: 200 LDA 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.002
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 24/116 (20%)
Query: 17 ELINEHISNLITWQDTRCD------HAYLTSLPRPDSHLRAYTGYGI---------NTL- 60
E I + ++ W+ CD + L L P + + + + L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 61 -LWY--MQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELK-DGDGNTPLH 112
+W+ ++ + V+ H ++ V K KE +SI LELK + LH
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIP--SIYLELKVKLENEYALH 446
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 36.0 bits (84), Expect = 0.002
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINT- 59
MHG L D + I W D RC T L R TG +
Sbjct: 77 MHGATL------LDAQ---QRVLRPAILWNDGRC-AQECTLLEARVPQSRVITGNLMMPG 126
Query: 60 -----LLWYMQHEPQ 69
LLW +HEP+
Sbjct: 127 FTAPKLLWVQRHEPE 141
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 34.6 bits (80), Expect = 0.007
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 18/77 (23%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPR--PDSHLRAYTGYGIN 58
M + D+ +E + + + D R + +L + +
Sbjct: 83 MQNFLP------LDQD---HEPLHRAVLYSDKRP-LKEAEEINARHGADNLWSALENPMT 132
Query: 59 T------LLWYMQHEPQ 69
L+++ PQ
Sbjct: 133 AASILPKLVFWRASFPQ 149
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 33.7 bits (78), Expect = 0.014
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 18/77 (23%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPR--PDSHLRAYTGYGIN 58
+ +VL D + I D RC + L A TG G+
Sbjct: 86 LPAVVLL------DDR---GAVLRPSIQQSDGRC-GDEVAELRAEVDSEAFLARTGNGVT 135
Query: 59 T------LLWYMQHEPQ 69
L W +HEP
Sbjct: 136 QQLVTAKLRWIERHEPA 152
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.024
Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 34/147 (23%)
Query: 5 VLWRSPAWTDKFELINEHISNLITW---QDTRCDHAYLTSLPRPDSHLRAYTGYGINTLL 61
L T E + N++ W D YL S+P + G+ L
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP------ISCPLIGVIQLA 247
Query: 62 WY------MQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAA 115
Y + P + Y AT + LV ++ A + +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHS----QGLVTAVAIAET----DSWE-------SF 292
Query: 116 QNNSVSVTQALLGFGAEVNVSQIPYFP 142
+ L G +P
Sbjct: 293 FVSVRKAITVLFFIGVR---CYE-AYP 315
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 31.1 bits (71), Expect = 0.10
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 18/77 (23%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPR--PDSHLRAYTG---Y 55
VL D+ + + + ++D+R + + + + +G
Sbjct: 83 GVDFVLL------DQQ---GQRVGLPVAYRDSRTN-GLMAQAQQQLGKRDIYQRSGIQFL 132
Query: 56 GINT---LLWYMQHEPQ 69
NT L + +P+
Sbjct: 133 PFNTLYQLRALTEQQPE 149
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 28.1 bits (63), Expect = 1.0
Identities = 7/78 (8%), Positives = 16/78 (20%), Gaps = 15/78 (19%)
Query: 2 HGIVLWRSPAWTDKFELINEHISNLITWQDTRCDH--AYLTSLPRPDSH-LRAYTGYGIN 58
G L + D S + W+ + + G I+
Sbjct: 105 EGQPLCLLAQYKDNPH------SWVKLWKHHAAQDKANAINEMAEKRGEAFLPRYGGKIS 158
Query: 59 T------LLWYMQHEPQT 70
+ + +
Sbjct: 159 SEWMIAKVWQILDEAEDV 176
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 26.8 bits (59), Expect = 2.4
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 77 AATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQA 125
T + +V+S + G AL G I N++S
Sbjct: 47 TETSEEDVYSCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETV 95
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 26.5 bits (59), Expect = 3.5
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 25 NLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINT------LLWYMQHEPQTVLQYTHAA 78
N+I W D R + + + G I+ LLW QH P T +++
Sbjct: 107 NVIVWMDHRA-ITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNT---WSNVG 162
Query: 79 TI 80
+
Sbjct: 163 HL 164
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 26.3 bits (57), Expect = 4.2
Identities = 2/43 (4%), Positives = 13/43 (30%)
Query: 73 QYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAA 115
+++ + + + + + E + T ++
Sbjct: 480 RHSFGPLDYESLQQELALKETVWKKVSPESNEDISTTVVYRME 522
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A
{Streptococcus pyogenes}
Length = 121
Score = 25.6 bits (56), Expect = 4.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 54 GYGINTLLWYMQHEPQT---VLQYTHAATIQVAKGD---KELVLSILAAGAALELKDGDG 107
G ++TL + Q+ ++ A I+ +K D KEL AGA +EL+D G
Sbjct: 1 GAMVDTLSGLSSEQGQSGDMTIEEDSATHIKFSKRDIDGKEL------AGATMELRDSSG 54
Query: 108 NT 109
T
Sbjct: 55 KT 56
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 26.0 bits (57), Expect = 5.6
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 75 THAATIQVAKGDKELVLSILAAGAALELKDG--DGNTPLHIAAQNNSVSVTQA 125
+ A++ G+ +++ S++ A AALE+ + A S S
Sbjct: 72 SCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVK 124
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like
domain, cell adhesion; 1.80A {Streptococcus agalactiae}
PDB: 3phs_A
Length = 239
Score = 25.9 bits (56), Expect = 5.8
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 65 QHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQ 124
+ + + + K + AG EL + +G TP+ + +S +
Sbjct: 113 EDKVIYPKIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDA 172
Query: 125 A 125
A
Sbjct: 173 A 173
>2i06_A DNA replication terminus site-binding protein; protein-DNA complex,
replication-DNA complex; HET: DNA; 2.20A {Escherichia
coli} SCOP: e.2.1.1 PDB: 2ewj_A* 1ecr_A* 2i05_A* 1sut_A
Length = 309
Score = 25.4 bits (55), Expect = 7.1
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 14 DKFELINEHISNLITWQDTRCDHAYLTSLPRPDS 47
+FE ++ H+ LIT R LT L P +
Sbjct: 138 ARFEWVHRHLPGLITLNAYRT----LTVLHDPAT 167
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 25.4 bits (56), Expect = 7.7
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 32/92 (34%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRC-----------------DHAYLTSLP 43
HG+V+ D I + + W DT D +
Sbjct: 74 QHGMVI------LDNQ---GNVIRDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIA 124
Query: 44 RPDSHLRAYTGYGINT------LLWYMQHEPQ 69
R G + W ++EP+
Sbjct: 125 RGKQRWVKAVGSSPVASYTLTKVAWVAENEPE 156
>3up9_A Putative uncharacterized protein; membrane lipoprotein,
L-methionine binding protein, NLPA LIP structural
genomics; HET: PG4 PE4; 2.35A {Actinomyces
odontolyticus}
Length = 245
Score = 25.3 bits (56), Expect = 8.3
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 91 LSILAAGAALELKDGDGNTPLHIA 114
L +LA + + +GDG+ ++
Sbjct: 122 LELLATQGLVSIPEGDGDVNINTV 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,153,089
Number of extensions: 113896
Number of successful extensions: 639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 341
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.5 bits)