RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy229
(142 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 55.0 bits (131), Expect = 2e-10
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
H A G +V ++L GA+ + + TPLH+AA+ V + LL A+VN
Sbjct: 5 HVA---SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61
Score = 45.4 bits (106), Expect = 5e-07
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 62 WYMQHEPQTVLQYT--HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
+T L Y+ H A +G ++V +L GA+ DG TPL IA +
Sbjct: 319 HQADVNAKTKLGYSPLHQA---AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 375
Query: 120 VSVTQAL 126
+SVT L
Sbjct: 376 ISVTDVL 382
Score = 43.4 bits (101), Expect = 2e-06
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
G E+ +L A + K D TPLH AA+ ++ + LL A N
Sbjct: 41 ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93
Score = 41.5 bits (96), Expect = 9e-06
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
+ G + +L A +G TPLH+A +N++ + + LL G +
Sbjct: 134 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192
Score = 37.6 bits (86), Expect = 2e-04
Identities = 22/75 (29%), Positives = 32/75 (42%)
Query: 60 LLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
LL Y +Q + +G E+V +L+ A L + G TPLH+ AQ
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276
Query: 120 VSVTQALLGFGAEVN 134
V V L+ G V+
Sbjct: 277 VPVADVLIKHGVMVD 291
Score = 36.9 bits (84), Expect = 4e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 109 TPLHIAAQNNSVSVTQALLGFGAEVNV 135
TPLH+A+ + + + LL GA NV
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNV 28
Score = 30.7 bits (68), Expect = 0.053
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
+ V + ++V +L G + +G TPLHIAA+ N V V ++LL
Sbjct: 167 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 218
Score = 24.2 bits (51), Expect = 7.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 104 DGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G TPLH+AAQ + LL A N+
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 259
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 51.6 bits (122), Expect = 3e-09
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ + E + L +D +G+T L+IAA+ ++S+ ALL +GA+ +
Sbjct: 228 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 287
Score = 42.3 bits (98), Expect = 5e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 87 KELVLSILAAGAALELK-DGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+E+ + L + D GNTPLH ++ + + L+ G+
Sbjct: 86 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 135
Score = 35.4 bits (80), Expect = 0.001
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAA 115
+ A G+ +V ++L GA + + G P+ A
Sbjct: 264 NIA---ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 49.3 bits (116), Expect = 2e-08
Identities = 13/70 (18%), Positives = 21/70 (30%)
Query: 62 WYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS 121
+ V ++ +L AGA + G TPL A +
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239
Query: 122 VTQALLGFGA 131
+ + L GA
Sbjct: 240 LARLLRAHGA 249
Score = 40.8 bits (94), Expect = 2e-05
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
DG+T LH+A + LLGF A
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY 37
Score = 36.2 bits (82), Expect = 6e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 82 VAKGDKELVLSILAAGA---ALELKDGDGNTPLHIAAQNNSV 120
V + + +L A L+L++ G T LH+AA
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 49.2 bits (116), Expect = 2e-08
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 80 IQVAKGDKELVLSIL-AAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ V K LV +L + D DG T L +A + + + L GA +
Sbjct: 225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
Score = 38.4 bits (88), Expect = 1e-04
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 82 VAKGDKELVLSILAAGAALELKDGD-GNTPLHIAAQNNSVSVTQALL 127
V D +LV +L GA + ++ + G TPLH A Q + + + LL
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Score = 37.6 bits (86), Expect = 2e-04
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLG-FGAEVNV 135
+ + +L GA + ++ G TPL +A + + + Q LL E+N
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248
Score = 36.9 bits (84), Expect = 4e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
+ N L A QN V + Q LL GA VN
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF 33
Score = 34.6 bits (78), Expect = 0.002
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 101 ELKDGDGNTPLHIAAQNNSVSVTQALLG-FGAEVN 134
E G T L AA+ V V + LL GA+VN
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 48.0 bits (113), Expect = 5e-08
Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 7/138 (5%)
Query: 11 AWTDKF-ELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTLLWYMQHEPQ 69
W + F I+ + +L+T H +L + + Y + Q
Sbjct: 23 LWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD 82
Query: 70 TVLQYTHAAT---IQVAKGDK---ELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVT 123
+ + + G + + +L + +++ + +AA+N + V
Sbjct: 83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142
Query: 124 QALLGFGAEVNVSQIPYF 141
L ++ I
Sbjct: 143 NRLCELAPTEIMAMIQAE 160
Score = 38.7 bits (89), Expect = 1e-04
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELK-----DGDGNTPLHIAAQNNSVSVTQALL 127
+ + + + +L+ L GD N L +A + + LL
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337
Score = 31.8 bits (71), Expect = 0.022
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 83 AKGDKELVLSILAAGAALELKDGD--GNTPLHIAAQNNSVSVTQALLGFGAEVNVSQI 138
G ++ + + +AA+N + V L + I
Sbjct: 135 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192
Score = 27.9 bits (61), Expect = 0.49
Identities = 4/61 (6%), Positives = 11/61 (18%), Gaps = 7/61 (11%)
Query: 85 GDKELVLSILAAGAALELKDGDGN-------TPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+ + +L L + + LL ++
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309
Query: 138 I 138
Sbjct: 310 T 310
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 46.4 bits (108), Expect = 2e-07
Identities = 16/124 (12%), Positives = 38/124 (30%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTL 60
+ E + L+ + + + + L
Sbjct: 104 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 163
Query: 61 LWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSV 120
L + + + + A +G LV +++ +GA LK+ +TPL +A +
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 223
Query: 121 SVTQ 124
+ +
Sbjct: 224 DILR 227
Score = 36.0 bits (81), Expect = 6e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGF----GAEVNV 135
DG+TPLHIA ++ L+ G E+++
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI 35
Score = 31.4 bits (69), Expect = 0.025
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNN 118
LV G L++ + TPLH+A
Sbjct: 20 HRLVNLFQQGGRELDIYNNLRQTPLHLAVITT 51
Score = 29.8 bits (65), Expect = 0.093
Identities = 15/136 (11%), Positives = 41/136 (30%), Gaps = 1/136 (0%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTL 60
A + + + + L + + L
Sbjct: 70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129
Query: 61 LWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAA-GAALELKDGDGNTPLHIAAQNNS 119
L ++ + I + + ++ +L GA + + G++ LH A+
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189
Query: 120 VSVTQALLGFGAEVNV 135
+ + + L+ GA+ ++
Sbjct: 190 LPLVRTLVRSGADSSL 205
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 44.7 bits (104), Expect = 7e-07
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALL 127
+G E+V+ ++ GA++E D +T +A NN ++
Sbjct: 229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274
Score = 40.9 bits (94), Expect = 2e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
G+ + +D DG TP+ +AAQ + V L+ GA V
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 249
Score = 38.6 bits (88), Expect = 9e-05
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEVNVSQ 137
+ + + + T LH A N+S ++ L+ A+ ++
Sbjct: 8 TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63
Score = 23.9 bits (50), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 94 LAAGAALELKDGDGNTPLHIAAQNNSV 120
+AAGA + D D NTPL +A
Sbjct: 61 IAAGADVNAMDCDENTPLMLAVLARRR 87
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 43.6 bits (101), Expect = 2e-06
Identities = 20/129 (15%), Positives = 38/129 (29%)
Query: 7 WRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTLLWYMQH 66
+ L + + + R L +
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 67 EPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
+ + A + AKG E++ ++ A + +KD DG TPLH AA + L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 127 LGFGAEVNV 135
+ ++
Sbjct: 252 VENLCDMEA 260
Score = 39.7 bits (91), Expect = 4e-05
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 29 WQDTRCDHAYLTSLPRPDSHLRAYTGYGINTLLWYMQHEPQTVLQYTHAATIQVAKGDKE 88
D R + T+L + + + + + HAA G +E
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA---AHWGKEE 246
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNN 118
++ +E + G T +A ++
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 37.8 bits (86), Expect = 2e-04
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 82 VAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQA 125
+ GD E VL +L GA + + DG T LH A +++V + +
Sbjct: 48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91
Score = 32.4 bits (72), Expect = 0.012
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVNV 135
D A + LL GA++N
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINY 68
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 42.6 bits (98), Expect = 4e-06
Identities = 20/135 (14%), Positives = 33/135 (24%), Gaps = 3/135 (2%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTL 60
A ++ T HL + GY
Sbjct: 69 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128
Query: 61 LWYMQHEPQTVLQYTHAAT---IQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQN 117
L + + T + V + +LV +L GA + G +P +
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188
Query: 118 NSVSVTQALLGFGAE 132
S + Q L E
Sbjct: 189 PSTRIQQQLGQLTLE 203
Score = 34.5 bits (77), Expect = 0.003
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 106 DGNTPLHIAAQNNSVSVT----QALLGFGAEVNV 135
DG++ LH+A + ++T + + G A +N
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF 34
Score = 30.6 bits (67), Expect = 0.049
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 87 KELVLSILAAGAALELKDGDGNTPLHIAAQNN 118
E++ + A L ++ TPLH+A N
Sbjct: 19 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 50
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 40.2 bits (92), Expect = 2e-05
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 62 WYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS 121
+ + Q T +G E ++L A E+ D P +A++
Sbjct: 145 HHANRDAQDDKDETPLFLAAR-EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHD 203
Query: 122 VTQAL 126
+ + L
Sbjct: 204 IVRLL 208
Score = 37.1 bits (84), Expect = 3e-04
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 87 KELVLSILAAGAALELK-DGDGNTPLHIAAQNNSVSVTQAL 126
+++ +LA GA L D G T LH+AA+ + L
Sbjct: 2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 39.2 bits (90), Expect = 5e-05
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 62 WYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNSVS 121
I + G E+V ++L GA + + +G TPLH AA N
Sbjct: 58 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE 117
Query: 122 VTQALLGFGAEVNV 135
+ LL GA +
Sbjct: 118 IAVMLLEGGANPDA 131
Score = 38.4 bits (88), Expect = 9e-05
Identities = 11/69 (15%), Positives = 29/69 (42%)
Query: 60 LLWYMQHEPQTVLQYTHAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLHIAAQNNS 119
LL+Y + + + E +++ GA++ +++ + TPL +A
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG 214
Query: 120 VSVTQALLG 128
+ + + + G
Sbjct: 215 LILKRMVEG 223
Score = 36.1 bits (82), Expect = 6e-04
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 82 VAKGD-KELVLSILAAGAALELKDGDGNTPLHIAAQNN 118
G +EL SILA + D D T LH A
Sbjct: 11 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAG 48
Score = 33.4 bits (75), Expect = 0.006
Identities = 15/98 (15%), Positives = 26/98 (26%)
Query: 29 WQDTRCDHAYLTSLPRPDSHLRAYTGYGINTLLWYMQHEPQTVLQYTHAATIQVAKGDKE 88
+ A + LL +K E
Sbjct: 58 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE 117
Query: 89 LVLSILAAGAALELKDGDGNTPLHIAAQNNSVSVTQAL 126
+ + +L GA + KD T +H AA ++ + L
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 39.0 bits (89), Expect = 6e-05
Identities = 16/132 (12%), Positives = 28/132 (21%), Gaps = 4/132 (3%)
Query: 1 MHGIVLWRSPAWTDKFELINEHISNLITWQDTRCDHAYLTSLPRPDSHLRAYTGYGINTL 60
+ + E LI + +P +
Sbjct: 99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 158
Query: 61 LWYMQHEPQTVLQYTHAATIQVAKGDKELV-LSILAAGAALELKDGDGNTPLHIAAQNNS 119
Q +A+G + L + GA +L D G +A
Sbjct: 159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ- 217
Query: 120 VSVTQALLGFGA 131
V + L
Sbjct: 218 --VKKFFLNNVV 227
Score = 36.3 bits (82), Expect = 5e-04
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAA-LELKDGDGNTPLHIAAQNNSV 120
H A + + V +L + + L KD DG PLH + +
Sbjct: 5 HQA---CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47
Score = 31.3 bits (69), Expect = 0.024
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 108 NTPLHIAAQNNSVSVTQALL-GFGAEVNV 135
N PLH A N Q LL + +
Sbjct: 1 NYPLHQACMENEFFKVQELLHSKPSLLLQ 29
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 36.3 bits (82), Expect = 4e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 96 AGAALELKDGDGNTPLHIAAQNNSVSVTQALLG 128
A + L +D G TPL +A Q + + L G
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 35.2 bits (79), Expect = 0.001
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 106 DGNTPLHIAAQNNSVSVTQALLGFGAEVN 134
D L AA+ + L+ GA
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT 29
Score = 32.9 bits (73), Expect = 0.006
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 98 AALELKDGDGNTPLHIAAQNNSVSVTQAL 126
A + + T I+ N + + + L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 35.0 bits (79), Expect = 0.001
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 97 GAALELKDGDGNTPLHIAAQNNSVSVTQALLGFGA 131
A++E+ + G TPL IA + + L +
Sbjct: 104 KASIEIANESGETPLDIAKRLKHEHCEELLTQALS 138
Score = 34.2 bits (77), Expect = 0.002
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 76 HAATIQVAKGDKELVLSILAAGA------ALELKDGDGNTPLHIAAQN---NSVSVTQAL 126
H+ V D +L A G L T LH+A ++ S+ + L
Sbjct: 8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67
Query: 127 LGFGAEVNVSQIPYFP 142
+ ++
Sbjct: 68 VQNSGNLDKQTGKGST 83
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 33.3 bits (74), Expect = 0.004
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 101 ELKDGDGNTPLHIAAQNNSVSVTQALLGFG 130
++ G+T +A V + G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156
Score = 30.6 bits (67), Expect = 0.034
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 109 TPLHIAAQNNSVSVTQALLGFGAEVNV 135
L AA + +LL VN
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNA 29
Score = 24.1 bits (50), Expect = 7.6
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 76 HAATIQVAKGDKELVLSILAAGAALELKDGDGNTPLH 112
+A A+GD E + S+L + ++G G T L
Sbjct: 6 ASA---AARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 29.6 bits (65), Expect = 0.065
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 93 ILAAGA---ALELKDGDGNTPLHIAAQNNSVSVTQALLGFGAEV 133
++ +GA A+ D + +Q L G ++
Sbjct: 86 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129
Score = 27.3 bits (59), Expect = 0.47
Identities = 2/34 (5%), Positives = 10/34 (29%)
Query: 109 TPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYFP 142
L ++ + Q ++ + ++
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGIT 36
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 29.2 bits (63), Expect = 0.12
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 107 GNTPLHIAAQNNSVSVTQALLGFGAEVNVSQIPYF 141
L AA V +ALL GA N
Sbjct: 3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGR 37
Score = 28.4 bits (61), Expect = 0.22
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 103 KDGDGNTPLHIAAQNNSVSVTQALL 127
+D G P+ +A + V + L
Sbjct: 98 RDAWGRLPVDLAEELGHRDVARYLR 122
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 26.4 bits (56), Expect = 0.89
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 107 GNTPLHIAAQNNSVSVTQALL 127
+ A +N + + +
Sbjct: 2 CDKEFMWALKNGDLDEVKDYV 22
Score = 25.2 bits (53), Expect = 2.1
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 102 LKDGDGNTPLHIAAQNN 118
+K DG T L
Sbjct: 96 VKGPDGLTALEATDNQA 112
>d2i06a1 e.2.1.1 (A:5-309) Replication terminator protein (Tus)
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 25.6 bits (56), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 15 KFELINEHISNLITWQDTRCDHAYLTSLPRPDS 47
+FE ++ H+ LIT R LT L P +
Sbjct: 135 RFEWVHRHLPGLITLNAYRT----LTVLHDPAT 163
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 24.2 bits (52), Expect = 6.2
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 52 YTGYGINTLLWYMQHEPQTVLQYTHAATIQVAKGDK 87
++ YG + + Y H + V+ GDK
Sbjct: 192 WSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDK 227
>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 94
Score = 23.3 bits (49), Expect = 8.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 51 AYTGYGINTLLWYMQHEPQT 70
Y+ G + WY Q+ ++
Sbjct: 9 TYSDRGSQSFFWYRQYSGKS 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,607
Number of extensions: 20086
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 71
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)