BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2291
(96 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332022217|gb|EGI62532.1| General transcription factor IIH subunit 5 [Acromyrmex
echinatior]
Length = 73
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 57/70 (81%)
Query: 26 LGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLL 85
L R ++ FSD MKQFLLHLDET+ LGR+FIIQDLDE HLFIS+D++E L +VDDL+
Sbjct: 2 LNIRTKLYVFSDAAMKQFLLHLDETSALGRKFIIQDLDEKHLFISADILETLQAKVDDLM 61
Query: 86 DQISFPINDR 95
DQISFP+ ++
Sbjct: 62 DQISFPLAEK 71
>gi|357617748|gb|EHJ70975.1| hypothetical protein KGM_16313 [Danaus plexippus]
Length = 73
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDET LGR+FI+QDLDETH+FISSD++E L RVDDL+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDETLALGRKFILQDLDETHVFISSDIVETLQARVDDLMDQ 63
Query: 88 ISFPINDR 95
SFP++D+
Sbjct: 64 FSFPVHDK 71
>gi|195161284|ref|XP_002021498.1| GL26481 [Drosophila persimilis]
gi|198472498|ref|XP_002133059.1| GA28879 [Drosophila pseudoobscura pseudoobscura]
gi|194103298|gb|EDW25341.1| GL26481 [Drosophila persimilis]
gi|198139040|gb|EDY70461.1| GA28879 [Drosophila pseudoobscura pseudoobscura]
Length = 73
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 57/69 (82%), Gaps = 2/69 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDE LGR+FIIQDLDE+HLFIS+D++E+L RVDDL+D+
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDEKLALGRKFIIQDLDESHLFISTDIVEVLQARVDDLMDR 63
Query: 88 ISFPINDRD 96
ISFP++D+D
Sbjct: 64 ISFPLHDKD 72
>gi|281364435|ref|NP_001137791.2| Tfb5 [Drosophila melanogaster]
gi|194856448|ref|XP_001968752.1| GG24326 [Drosophila erecta]
gi|195342622|ref|XP_002037899.1| GM18045 [Drosophila sechellia]
gi|195472803|ref|XP_002088688.1| GE18705 [Drosophila yakuba]
gi|195550871|ref|XP_002076121.1| GD11985 [Drosophila simulans]
gi|190660619|gb|EDV57811.1| GG24326 [Drosophila erecta]
gi|194132749|gb|EDW54317.1| GM18045 [Drosophila sechellia]
gi|194174789|gb|EDW88400.1| GE18705 [Drosophila yakuba]
gi|194201770|gb|EDX15346.1| GD11985 [Drosophila simulans]
gi|272406899|gb|ACL82997.2| Tfb5 [Drosophila melanogaster]
Length = 73
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDE LGR+FIIQDLDE HLFIS+D++E+L RVDDL+D+
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDDLMDR 63
Query: 88 ISFPINDRD 96
ISFP++D+D
Sbjct: 64 ISFPLHDKD 72
>gi|289743363|gb|ADD20429.1| putative BBOX Zn-finger protein [Glossina morsitans morsitans]
Length = 73
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDET LGR+FIIQDLDE HLFIS+D+++ L RVDDL+D+
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDETLALGRKFIIQDLDEKHLFISTDIVDALQARVDDLMDR 63
Query: 88 ISFPINDRD 96
ISFP++++D
Sbjct: 64 ISFPLHEKD 72
>gi|242011976|ref|XP_002426719.1| TFIIH basal transcription factor complex TTD-A subunit, putative
[Pediculus humanus corporis]
gi|212510890|gb|EEB13981.1| TFIIH basal transcription factor complex TTD-A subunit, putative
[Pediculus humanus corporis]
Length = 71
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D+ MKQFLLHLDET LG++FIIQDLD+THLFISSD++ +L T+VDDL+DQ
Sbjct: 6 KGVLVEC--DQAMKQFLLHLDETLALGKKFIIQDLDDTHLFISSDILYILQTKVDDLIDQ 63
Query: 88 ISFPINDR 95
IS P+ ++
Sbjct: 64 ISAPVTEK 71
>gi|194761538|ref|XP_001962986.1| GF15714 [Drosophila ananassae]
gi|190616683|gb|EDV32207.1| GF15714 [Drosophila ananassae]
Length = 73
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDE LGR+FIIQDLDE HLFIS+D++++L RVDDL+D+
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDEKLALGRKFIIQDLDEHHLFISTDIVDVLQARVDDLMDR 63
Query: 88 ISFPINDRD 96
ISFP++D+D
Sbjct: 64 ISFPLHDKD 72
>gi|195114636|ref|XP_002001873.1| GI14600 [Drosophila mojavensis]
gi|193912448|gb|EDW11315.1| GI14600 [Drosophila mojavensis]
Length = 73
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDE LGR+FIIQDLDE HLFIS+D++E+L RVD+L+D+
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDELMDR 63
Query: 88 ISFPINDRD 96
ISFP++++D
Sbjct: 64 ISFPLHEKD 72
>gi|427785875|gb|JAA58389.1| Putative proteinral transcription factor iie tfiie subunit
[Rhipicephalus pulchellus]
Length = 71
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLD+TN LG++FIIQDLDETH+FI+++++E L ++DD++DQ
Sbjct: 6 KGILVEC--DPAMKQFLLHLDDTNALGKKFIIQDLDETHVFITAEILETLQNKIDDIMDQ 63
Query: 88 ISFPINDR 95
ISFP++++
Sbjct: 64 ISFPLSEK 71
>gi|241646745|ref|XP_002411111.1| general transcription factor IIE (TFIIE) subunit, putative
[Ixodes scapularis]
gi|215503741|gb|EEC13235.1| general transcription factor IIE (TFIIE) subunit, putative
[Ixodes scapularis]
gi|442749503|gb|JAA66911.1| Putative proteinral transcription factor iie tfiie subunit
[Ixodes ricinus]
Length = 71
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLD+TN LGR+FIIQDLDETH+FI++D+++ L ++DD++DQ
Sbjct: 6 KGILVEC--DPAMKQFLLHLDDTNALGRKFIIQDLDETHVFITADILDTLQNKIDDIMDQ 63
Query: 88 ISFPINDR 95
ISFP+ ++
Sbjct: 64 ISFPLAEK 71
>gi|195386090|ref|XP_002051737.1| GJ17109 [Drosophila virilis]
gi|194148194|gb|EDW63892.1| GJ17109 [Drosophila virilis]
Length = 73
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDE LGR+FIIQDLDE HLFIS+D++E+L RVD+L+D+
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDEKLALGRKFIIQDLDENHLFISTDIVEVLQARVDELMDR 63
Query: 88 ISFPINDRD 96
I+FP++++D
Sbjct: 64 INFPLHEKD 72
>gi|383851540|ref|XP_003701290.1| PREDICTED: general transcription factor IIH subunit 5-like
[Megachile rotundata]
Length = 73
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDET LGR+FIIQDLDE HLFIS D+++ L +VDDL+DQ
Sbjct: 6 KGILVEC--DAAMKQFLLHLDETFALGRKFIIQDLDERHLFISVDILDTLQAKVDDLMDQ 63
Query: 88 ISFPINDR 95
ISFP+ ++
Sbjct: 64 ISFPLAEK 71
>gi|307209702|gb|EFN86560.1| General transcription factor IIH subunit 5 [Harpegnathos
saltator]
Length = 61
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 51/59 (86%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
D MKQFLLHLD+T+ LG++FIIQDLDE HLFIS+D+++ L +VDDL+DQISFP+ ++
Sbjct: 1 DAAMKQFLLHLDDTSALGKKFIIQDLDERHLFISADILDTLQAKVDDLMDQISFPLAEK 59
>gi|260802554|ref|XP_002596157.1| hypothetical protein BRAFLDRAFT_202865 [Branchiostoma floridae]
gi|229281411|gb|EEN52169.1| hypothetical protein BRAFLDRAFT_202865 [Branchiostoma floridae]
Length = 71
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDE N LGR+F++QDLD+THLFIS+D+++LL ++DDL DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDEKNALGRKFVMQDLDDTHLFISADIVDLLQEKIDDLFDQ 63
Query: 88 ISFPINDR 95
++FP+ +
Sbjct: 64 LTFPVQQK 71
>gi|157167982|ref|XP_001663033.1| hypothetical protein AaeL_AAEL012891 [Aedes aegypti]
gi|108870677|gb|EAT34902.1| AAEL012891-PA [Aedes aegypti]
Length = 68
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 51/60 (85%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDRD 96
D MKQFLLHLDET +LGR+FIIQDLDE HLFIS+D+IE L RVDDL+D+IS +++++
Sbjct: 8 DPAMKQFLLHLDETQSLGRKFIIQDLDERHLFISTDIIETLQARVDDLMDRISVSLHEKE 67
>gi|346470273|gb|AEO34981.1| hypothetical protein [Amblyomma maculatum]
Length = 71
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLD+TN LG++FIIQDLDETH+FI++++++ L ++DD++DQ
Sbjct: 6 KGILVEC--DPAMKQFLLHLDDTNALGKKFIIQDLDETHVFITAEILDTLQNKIDDIMDQ 63
Query: 88 ISFPINDR 95
ISFP+ ++
Sbjct: 64 ISFPLTEK 71
>gi|307176132|gb|EFN65830.1| General transcription factor IIH subunit 5 [Camponotus
floridanus]
Length = 59
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
D MKQFLLHLDET+ LGR+FIIQDLDE HLFIS+D+++ L +VDDL+DQISF ++
Sbjct: 1 DAAMKQFLLHLDETSALGRKFIIQDLDERHLFISADILDTLQAKVDDLMDQISFTYAEK 59
>gi|443715047|gb|ELU07198.1| hypothetical protein CAPTEDRAFT_98035 [Capitella teleta]
Length = 70
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 53/66 (80%), Gaps = 2/66 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLLHLDETN LGR F+IQDLDETH+FIS+D++E L +++DDL+D+
Sbjct: 6 KGILIEC--DPAMKQFLLHLDETNALGRSFVIQDLDETHIFISADILETLTSKIDDLMDK 63
Query: 88 ISFPIN 93
+ F ++
Sbjct: 64 LHFDVS 69
>gi|157167988|ref|XP_001663036.1| hypothetical protein AaeL_AAEL012900 [Aedes aegypti]
gi|170059029|ref|XP_001865183.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|108870680|gb|EAT34905.1| AAEL012900-PA [Aedes aegypti]
gi|167877878|gb|EDS41261.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 58
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 50/57 (87%)
Query: 40 MKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDRD 96
MKQFLLHLDET +LGR+FIIQDLDE HLFIS+D+IE L RVDDL+D+IS +++++
Sbjct: 1 MKQFLLHLDETQSLGRKFIIQDLDERHLFISTDIIETLQARVDDLMDRISVSLHEKE 57
>gi|291221281|ref|XP_002730649.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 71
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 54/65 (83%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R ++ C D MKQFLLHLDE+N LG++FIIQ+LDETHLFIS+D++++L ++D+L+DQ
Sbjct: 6 RGVLVEC--DPVMKQFLLHLDESNVLGKKFIIQELDETHLFISADIVDILQDKIDELMDQ 63
Query: 88 ISFPI 92
++P+
Sbjct: 64 NAYPV 68
>gi|391346638|ref|XP_003747577.1| PREDICTED: general transcription factor IIH subunit 5-like
[Metaseiulus occidentalis]
Length = 70
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R ++ C D MK+FL HLDET LG+ FIIQDLDETHLFI+S++I+ L+ +VDDL+++
Sbjct: 6 RGILVEC--DAAMKEFLNHLDETRALGQTFIIQDLDETHLFIASEIIDTLLNKVDDLMER 63
Query: 88 ISFPIND 94
+SFPI +
Sbjct: 64 LSFPITE 70
>gi|341926186|ref|NP_001127834.2| general transcription factor IIH subunit 5 [Danio rerio]
gi|341926189|ref|NP_001230077.1| general transcription factor IIH subunit 5 [Danio rerio]
gi|225716198|gb|ACO13945.1| General transcription factor IIH subunit 5 [Esox lucius]
Length = 71
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDET+ LG++FIIQDLD+TH+FI ++V+++L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVQILQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|62859795|ref|NP_001017298.1| general transcription factor IIH, polypeptide 5 [Xenopus
(Silurana) tropicalis]
Length = 71
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDETN LG++FIIQDLD+TH+FI ++V+ +L +V +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDETNALGKKFIIQDLDDTHVFILAEVVAILQEKVGELMDQ 63
Query: 88 ISFPINDR 95
SFP+ +
Sbjct: 64 NSFPVTQK 71
>gi|410931175|ref|XP_003978971.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 72
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%)
Query: 29 RFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQI 88
+ ++ + D MK+FLLHLDET LGR+FI++DLDETHLFI ++V++ L RV +L+DQ
Sbjct: 6 KGVLLGWRDPAMKEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGELMDQN 65
Query: 89 SFPINDR 95
SFPI +
Sbjct: 66 SFPITQK 72
>gi|387019069|gb|AFJ51652.1| General transcription factor IIH subunit 5 [Crotalus adamanteus]
Length = 71
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQDLDETH+F+ ++++ L RV +L+DQ
Sbjct: 6 KGILIEC--DPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAEMVNFLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|148238110|ref|NP_001091004.1| general transcription factor IIH subunit 5 [Gallus gallus]
gi|326915773|ref|XP_003204187.1| PREDICTED: general transcription factor IIH subunit 5-like
[Meleagris gallopavo]
gi|67462032|sp|Q5ZKH0.1|TF2H5_CHICK RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5; AltName: Full=TFB5 ortholog; AltName:
Full=TFIIH basal transcription factor complex TTD-A
subunit
gi|53130888|emb|CAG31773.1| hypothetical protein RCJMB04_10n20 [Gallus gallus]
gi|449277879|gb|EMC85901.1| General transcription factor IIH subunit 5 [Columba livia]
Length = 71
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQDLDETH+F+ ++++ L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|308818193|ref|NP_001184220.1| general transcription factor IIH subunit 5 [Taeniopygia guttata]
gi|350537077|ref|NP_001232744.1| general transcription factor IIH subunit 5 [Taeniopygia guttata]
gi|197128631|gb|ACH45129.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
gi|197128632|gb|ACH45130.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
gi|197128633|gb|ACH45131.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
gi|197128634|gb|ACH45132.1| putative general transcription factor IIH polypeptide 5 variant 2
[Taeniopygia guttata]
Length = 71
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDE+N LG++FIIQDLDETH+F+ ++++ L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|149430633|ref|XP_001515546.1| PREDICTED: general transcription factor IIH subunit 5-like
[Ornithorhynchus anatinus]
Length = 71
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQDLD+TH+F+ ++++ LL RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDLDDTHVFVLAELVNLLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|327262010|ref|XP_003215819.1| PREDICTED: general transcription factor IIH subunit 5-like
[Anolis carolinensis]
Length = 71
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQDLDETH+F+ +++I L +V +L+DQ
Sbjct: 6 KGILIEC--DPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAEMINCLQEKVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|213510766|ref|NP_001134770.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|238231695|ref|NP_001154033.1| TFIIH basal transcription factor complex TTD-A subunit
[Oncorhynchus mykiss]
gi|209732492|gb|ACI67115.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|209733974|gb|ACI67856.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|209735844|gb|ACI68791.1| General transcription factor IIH subunit 5 [Salmo salar]
gi|225703508|gb|ACO07600.1| TFIIH basal transcription factor complex TTD-A subunit
[Oncorhynchus mykiss]
gi|303666550|gb|ADM16233.1| General transcription factor IIH subunit 5 [Salmo salar]
Length = 71
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDET+ LG++FIIQDLD+TH+FI ++V+ +L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|410916639|ref|XP_003971794.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
gi|410932672|ref|XP_003979717.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 71
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MK+FLLHLDET LG++FI++DLDETHLFI ++V++ L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKEFLLHLDETMALGKKFILKDLDETHLFILAEVVQTLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|402867842|ref|XP_003898040.1| PREDICTED: general transcription factor IIH subunit 5 [Papio
anubis]
Length = 81
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 52/68 (76%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
RRF I SD MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 14 RRFCICGLSDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 73
Query: 88 ISFPINDR 95
+F + +
Sbjct: 74 NAFSLTQK 81
>gi|410930277|ref|XP_003978525.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 71
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
D MK+FLLHLDET LGR+FI++DLDETHLFI ++V++ L RV +L+DQ SFPI +
Sbjct: 13 DPAMKEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGELMDQNSFPITQK 71
>gi|410899154|ref|XP_003963062.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
gi|410931373|ref|XP_003979070.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 71
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MK+FLLHLDET LGR+FI++DLDETHLFI ++V++ L RV +L+DQ
Sbjct: 6 KGVLLEC--DPAMKEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|337743333|gb|AEI73163.1| GTF2H5 [Kryptolebias marmoratus]
Length = 71
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHLDET LG++FII+DLD+THLFI ++V++ L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLHLDETMALGKKFIIKDLDDTHLFILAEVVQTLQDRVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|319401861|ref|NP_001188094.1| general transcription factor IIh subunit 5 [Ictalurus punctatus]
gi|308322071|gb|ADO28173.1| general transcription factor IIh subunit 5 [Ictalurus furcatus]
gi|308324549|gb|ADO29409.1| general transcription factor IIh subunit 5 [Ictalurus punctatus]
Length = 71
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDET+ LG++FIIQDLD+TH+FI ++V+ +L +V +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQEKVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|112419419|gb|AAI22293.1| Gtf2h5 protein [Danio rerio]
gi|197247098|gb|AAI65473.1| Gtf2h5 protein [Danio rerio]
Length = 56
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 48/56 (85%)
Query: 40 MKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
MKQFLL+LDET+ LG++FIIQDLD+TH+FI ++V+++L RV +L+DQ SFPI +
Sbjct: 1 MKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVQILQERVGELMDQNSFPITQK 56
>gi|432945341|ref|XP_004083550.1| PREDICTED: general transcription factor IIH subunit 5-like
[Oryzias latipes]
Length = 71
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDET LGR+FI++DLD+TH+FI ++V++ L RV DL+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDETMALGRKFILKDLDDTHVFILAEVVQTLQERVGDLMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|126310721|ref|XP_001371196.1| PREDICTED: general transcription factor IIH subunit 5-like
[Monodelphis domestica]
Length = 71
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVLAELVNFLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|395535218|ref|XP_003769627.1| PREDICTED: general transcription factor IIH subunit 5, partial
[Sarcophilus harrisii]
Length = 71
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 26 LGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLL 85
L + +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ L RV +L+
Sbjct: 4 LLKYIMISC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVLAELVNFLQERVGELM 61
Query: 86 DQISFPINDR 95
DQ SFPI +
Sbjct: 62 DQNSFPITQK 71
>gi|47224616|emb|CAG03600.1| unnamed protein product [Tetraodon nigroviridis]
Length = 71
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MK+FLLHLDET LG++FI++DLD+THLFI ++V++ L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKEFLLHLDETMALGKKFILKDLDDTHLFILAEVVQTLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|225703154|gb|ACO07423.1| TFIIH basal transcription factor complex TTD-A subunit
[Oncorhynchus mykiss]
Length = 71
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+L+ET+ LG++FIIQDL +TH+FI ++V+ +L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLNETSALGKKFIIQDLGDTHVFILAEVVHILQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|209735872|gb|ACI68805.1| General transcription factor IIH subunit 5 [Salmo salar]
Length = 56
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 47/56 (83%)
Query: 40 MKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
MKQFLL+LDET+ LG++FIIQDLD+TH+FI ++V+ +L RV +L+DQ SFPI +
Sbjct: 1 MKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQERVGELMDQNSFPITQK 56
>gi|410931429|ref|XP_003979098.1| PREDICTED: general transcription factor IIH subunit 5-like
[Takifugu rubripes]
Length = 60
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 41 KQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
K+FLLHLDET LGR+FI++DLDETHLFI ++V++ L RV +L+DQ SFPI +
Sbjct: 6 KEFLLHLDETMALGRKFILKDLDETHLFILAEVVQTLQERVGELMDQNSFPITQK 60
>gi|348524935|ref|XP_003449978.1| PREDICTED: general transcription factor IIH subunit 5-like
[Oreochromis niloticus]
Length = 71
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL+LDET LG++FI++DLD+TH+FI ++V++ L RV +L+DQ
Sbjct: 6 KGVLVEC--DPAMKQFLLYLDETMALGKKFILKDLDDTHVFILAEVVQTLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>gi|26378558|dbj|BAC25398.1| unnamed protein product [Mus musculus]
Length = 71
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+R +I C D MKQFLL+LDE N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KRVLIEC--DPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|225714502|gb|ACO13097.1| General transcription factor IIH subunit 5 [Lepeophtheirus
salmonis]
Length = 71
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R ++ C D MKQFLL+LDE LG RF++QDLD THLFIS +++ L R+DDL+D+
Sbjct: 6 RGVLVEC--DPAMKQFLLYLDERAELGTRFVVQDLDATHLFISPEILPKLQDRIDDLMDK 63
Query: 88 ISFPI 92
IS P+
Sbjct: 64 ISVPV 68
>gi|390356035|ref|XP_003728689.1| PREDICTED: general transcription factor IIH subunit 5-like,
partial [Strongylocentrotus purpuratus]
Length = 69
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 47/57 (82%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPI 92
SD MKQFLLHLDE N LG++FI+QDLDETH+FI +++++L +++DL+DQ +F +
Sbjct: 9 SDPAMKQFLLHLDEKNKLGKKFILQDLDETHVFIEPEILDVLREKINDLMDQNAFSV 65
>gi|344295125|ref|XP_003419264.1| PREDICTED: general transcription factor IIH subunit 5-like
[Loxodonta africana]
Length = 95
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 48/60 (80%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
SD MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F + +
Sbjct: 36 SDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVSVLQERVGELMDQNAFSLTQK 95
>gi|395839130|ref|XP_003792454.1| PREDICTED: general transcription factor IIH subunit 5 [Otolemur
garnettii]
Length = 71
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVVAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|225718492|gb|ACO15092.1| General transcription factor IIH subunit 5 [Caligus clemensi]
gi|225719128|gb|ACO15410.1| General transcription factor IIH subunit 5 [Caligus clemensi]
Length = 71
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R ++ C D MKQFLL+LDE LG RF++QDLD HLFIS +++ L R+DDL+D+
Sbjct: 6 RGVLVEC--DPAMKQFLLYLDEKEQLGSRFVVQDLDSRHLFISPEILPKLQDRIDDLMDK 63
Query: 88 ISFPI 92
IS P+
Sbjct: 64 ISVPV 68
>gi|348565392|ref|XP_003468487.1| PREDICTED: general transcription factor IIH subunit 5-like [Cavia
porcellus]
Length = 71
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHIFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|46359855|ref|NP_997001.1| general transcription factor IIH subunit 5 [Homo sapiens]
gi|94966867|ref|NP_001035627.1| general transcription factor IIH subunit 5 [Bos taurus]
gi|186910271|ref|NP_001119560.1| general transcription factor IIH subunit 5 [Rattus norvegicus]
gi|300192979|ref|NP_001177898.1| general transcription factor IIH subunit 5 [Macaca mulatta]
gi|73946181|ref|XP_855012.1| PREDICTED: general transcription factor IIH subunit 5 [Canis
lupus familiaris]
gi|114609951|ref|XP_001145020.1| PREDICTED: general transcription factor IIH subunit 5 isoform 3
[Pan troglodytes]
gi|296199527|ref|XP_002747193.1| PREDICTED: general transcription factor IIH subunit 5 [Callithrix
jacchus]
gi|297679502|ref|XP_002817565.1| PREDICTED: general transcription factor IIH subunit 5 isoform 2
[Pongo abelii]
gi|301758625|ref|XP_002915161.1| PREDICTED: general transcription factor IIH subunit 5-like
[Ailuropoda melanoleuca]
gi|332245292|ref|XP_003271794.1| PREDICTED: general transcription factor IIH subunit 5 [Nomascus
leucogenys]
gi|350578009|ref|XP_003480269.1| PREDICTED: general transcription factor IIH subunit 5-like
isoform 1 [Sus scrofa]
gi|350578011|ref|XP_003480270.1| PREDICTED: general transcription factor IIH subunit 5-like
isoform 2 [Sus scrofa]
gi|350578013|ref|XP_003480271.1| PREDICTED: general transcription factor IIH subunit 5-like
isoform 3 [Sus scrofa]
gi|354481344|ref|XP_003502861.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cricetulus griseus]
gi|397468339|ref|XP_003805845.1| PREDICTED: general transcription factor IIH subunit 5 [Pan
paniscus]
gi|402867838|ref|XP_003898038.1| PREDICTED: general transcription factor IIH subunit 5 [Papio
anubis]
gi|402867840|ref|XP_003898039.1| PREDICTED: general transcription factor IIH subunit 5 [Papio
anubis]
gi|403284962|ref|XP_003933815.1| PREDICTED: general transcription factor IIH subunit 5 [Saimiri
boliviensis boliviensis]
gi|403284964|ref|XP_003933816.1| PREDICTED: general transcription factor IIH subunit 5 [Saimiri
boliviensis boliviensis]
gi|410960282|ref|XP_003986722.1| PREDICTED: general transcription factor IIH subunit 5 [Felis
catus]
gi|426355007|ref|XP_004044930.1| PREDICTED: general transcription factor IIH subunit 5 isoform 1
[Gorilla gorilla gorilla]
gi|426355009|ref|XP_004044931.1| PREDICTED: general transcription factor IIH subunit 5 isoform 2
[Gorilla gorilla gorilla]
gi|67462047|sp|Q6ZYL4.1|TF2H5_HUMAN RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5; AltName: Full=TFB5 ortholog; AltName:
Full=TFIIH basal transcription factor complex TTD-A
subunit
gi|122137012|sp|Q2T9Z5.1|TF2H5_BOVIN RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5
gi|37994762|gb|AAH60317.1| General transcription factor IIH, polypeptide 5 [Homo sapiens]
gi|46019946|emb|CAG25512.1| TFIIH basal transcription factor complex TTDA subunit [Homo
sapiens]
gi|83405385|gb|AAI11196.1| General transcription factor IIH, polypeptide 5 [Bos taurus]
gi|112180527|gb|AAH56906.1| General transcription factor IIH, polypeptide 5 [Homo sapiens]
gi|119568048|gb|EAW47663.1| general transcription factor IIH, polypeptide 5 [Homo sapiens]
gi|149028307|gb|EDL83723.1| rCG40747, isoform CRA_b [Rattus norvegicus]
gi|149028308|gb|EDL83724.1| rCG40747, isoform CRA_b [Rattus norvegicus]
gi|167773397|gb|ABZ92133.1| general transcription factor IIH, polypeptide 5 [synthetic
construct]
gi|208968459|dbj|BAG74068.1| general transcription factor IIH, polypeptide 5 [synthetic
construct]
gi|296483877|tpg|DAA25992.1| TPA: general transcription factor IIH subunit 5 [Bos taurus]
gi|344235721|gb|EGV91824.1| General transcription factor IIH subunit 5 [Cricetulus griseus]
gi|355561950|gb|EHH18582.1| hypothetical protein EGK_15224 [Macaca mulatta]
gi|355564429|gb|EHH20929.1| hypothetical protein EGK_03881 [Macaca mulatta]
gi|355748798|gb|EHH53281.1| hypothetical protein EGM_13891 [Macaca fascicularis]
gi|380783187|gb|AFE63469.1| general transcription factor IIH subunit 5 [Macaca mulatta]
gi|383414741|gb|AFH30584.1| general transcription factor IIH subunit 5 [Macaca mulatta]
gi|410253736|gb|JAA14835.1| general transcription factor IIH, polypeptide 5 [Pan troglodytes]
gi|410328477|gb|JAA33185.1| general transcription factor IIH, polypeptide 5 [Pan troglodytes]
Length = 71
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|440902221|gb|ELR53034.1| General transcription factor IIH subunit 5 [Bos grunniens mutus]
Length = 65
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 48/60 (80%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
SD MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F + +
Sbjct: 6 SDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQK 65
>gi|159164708|pdb|2JNJ|A Chain A, Solution Structure Of The P8 Tfiih Subunit
gi|159164709|pdb|2JNJ|B Chain B, Solution Structure Of The P8 Tfiih Subunit
Length = 74
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 9 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 66
Query: 88 ISFPINDR 95
+F + +
Sbjct: 67 NAFSLTQK 74
>gi|157951657|ref|NP_852057.2| general transcription factor IIH subunit 5 [Mus musculus]
gi|67462069|sp|Q8K2X8.1|TF2H5_MOUSE RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=General transcription factor IIH
polypeptide 5; AltName: Full=TFB5 ortholog; AltName:
Full=TFIIH basal transcription factor complex TTD-A
subunit
gi|20809756|gb|AAH29238.1| General transcription factor IIH, polypeptide 5 [Mus musculus]
gi|26373608|dbj|BAC25328.1| unnamed protein product [Mus musculus]
gi|26376221|dbj|BAC25362.1| unnamed protein product [Mus musculus]
gi|26385792|dbj|BAC25038.1| unnamed protein product [Mus musculus]
gi|26385906|dbj|BAC25043.1| unnamed protein product [Mus musculus]
gi|148669723|gb|EDL01670.1| general transcription factor IIH, polypeptide 5, isoform CRA_b
[Mus musculus]
gi|148669724|gb|EDL01671.1| general transcription factor IIH, polypeptide 5, isoform CRA_b
[Mus musculus]
gi|148669725|gb|EDL01672.1| general transcription factor IIH, polypeptide 5, isoform CRA_b
[Mus musculus]
Length = 71
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|417395385|gb|JAA44754.1| Putative proteinral transcription factor iih subunit 5 [Desmodus
rotundus]
Length = 71
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVTVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|221116934|ref|XP_002160659.1| PREDICTED: general transcription factor IIH subunit 5-like [Hydra
magnipapillata]
Length = 72
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D +KQFLLH+DE LG++F+I+DLD THLF+++++I+ L +++ +L+D+
Sbjct: 6 KGVLVEC--DPTVKQFLLHMDEKGVLGQKFVIEDLDSTHLFVAANIIKTLESKLWELMDK 63
Query: 88 ISFPINDR 95
+SFP+ +
Sbjct: 64 LSFPVGNE 71
>gi|355693909|gb|AER99492.1| proteinral transcription factor IIH, polypeptide 5 [Mustela
putorius furo]
Length = 69
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 50/65 (76%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 5 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 62
Query: 88 ISFPI 92
+F +
Sbjct: 63 NAFSL 67
>gi|354466613|ref|XP_003495768.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cricetulus griseus]
Length = 118
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ + ++ +L RV +L+DQ
Sbjct: 53 RGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAKLVNVLQERVRELMDQ 110
Query: 88 ISFPINDR 95
+F + +
Sbjct: 111 NAFSLTQK 118
>gi|196012620|ref|XP_002116172.1| hypothetical protein TRIADDRAFT_30732 [Trichoplax adhaerens]
gi|190581127|gb|EDV21205.1| hypothetical protein TRIADDRAFT_30732 [Trichoplax adhaerens]
Length = 75
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D +KQ+LLHLDETN LG++F+I+DLD+ H+F+++++ + LM ++D +++Q
Sbjct: 6 KGVLVEC--DPTVKQYLLHLDETNALGQKFVIEDLDDQHVFVTAEIKDTLMKKIDAMMEQ 63
Query: 88 ISFPINDR 95
+S+ +D+
Sbjct: 64 LSYSSSDK 71
>gi|426235002|ref|XP_004011480.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 5 [Ovis aries]
Length = 71
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 47/59 (79%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F + +
Sbjct: 13 DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQK 71
>gi|281348032|gb|EFB23616.1| hypothetical protein PANDA_003107 [Ailuropoda melanoleuca]
Length = 59
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 47/59 (79%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ +F + +
Sbjct: 1 DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSLTQK 59
>gi|156363537|ref|XP_001626099.1| predicted protein [Nematostella vectensis]
gi|156212963|gb|EDO33999.1| predicted protein [Nematostella vectensis]
Length = 71
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D +KQFLLHLDE N LG++F+I+DLDETHLF+S+ ++ +L +V +L+D
Sbjct: 6 KGVLIDC--DPAVKQFLLHLDEHNVLGKKFVIEDLDETHLFVSAGIVPILQEKVWELMDT 63
Query: 88 ISFPIN 93
SF I+
Sbjct: 64 NSFNIS 69
>gi|225710384|gb|ACO11038.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
gi|225710996|gb|ACO11344.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
Length = 71
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +++C D MKQFLL+LDE LG RF+++DLD HLFIS +++ L R+DDL+D+
Sbjct: 6 RGVLVNC--DPAMKQFLLYLDEKEELGSRFVVKDLDPNHLFISPEILPKLQDRIDDLMDK 63
Query: 88 ISFPI 92
S P+
Sbjct: 64 FSVPV 68
>gi|225709208|gb|ACO10450.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
Length = 71
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +++C D MKQFLL+LDE LG RF+++DLD HLFIS +++ L R+DDL+D+
Sbjct: 6 RGVLVNC--DPAMKQFLLYLDEKEELGSRFVVKDLDPNHLFISPEILPKLQDRIDDLMDK 63
Query: 88 ISFP 91
S P
Sbjct: 64 FSVP 67
>gi|61680607|pdb|1YDL|A Chain A, Crystal Structure Of The Human Tfiih, Northeast
Structural Genomics Target Hr2045
Length = 79
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D KQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L DQ
Sbjct: 14 KGXLIEC--DPAXKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELXDQ 71
Query: 88 ISFPINDR 95
+F + +
Sbjct: 72 NAFSLTQK 79
>gi|229367018|gb|ACQ58489.1| General transcription factor IIH subunit 5 [Anoplopoma fimbria]
Length = 73
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 33 HCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPI 92
+ SD MKQFLL+LDE LG++FI++DLD+TH+FI ++V++ L RV +L+DQ SF
Sbjct: 11 YWTSDPAMKQFLLYLDEKMALGKKFILKDLDDTHVFILTEVVQTLQERVGELMDQNSFTA 70
Query: 93 NDR 95
+
Sbjct: 71 TQK 73
>gi|225709316|gb|ACO10504.1| General transcription factor IIH subunit 5 [Caligus
rogercresseyi]
Length = 71
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +++C D MKQ LL+LDE LG RF+++DLD HLFIS +++ L R+DDL+D+
Sbjct: 6 RGVLVNC--DPAMKQSLLYLDEKEELGSRFVVKDLDPNHLFISPEILPKLQDRIDDLMDK 63
Query: 88 ISFPI 92
S P+
Sbjct: 64 FSVPV 68
>gi|321459369|gb|EFX70423.1| hypothetical protein DAPPUDRAFT_328340 [Daphnia pulex]
Length = 73
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
++ C +D MKQ LLHLDE ++FI+ DLDETH+FI+S +E L + +D +D +SF
Sbjct: 9 LVEC-ADAAMKQLLLHLDEKLPPDKKFILHDLDETHVFIASKHLEFLQSEIDCFMDSVSF 67
Query: 91 PINDRD 96
P+ ++D
Sbjct: 68 PLAEKD 73
>gi|395848709|ref|XP_003796991.1| PREDICTED: general transcription factor IIH subunit 5-like
[Otolemur garnettii]
Length = 71
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MK FLL DE++ LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKLFLLSWDESSALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>gi|256080618|ref|XP_002576576.1| transcription factor complex TTD-A subunit [Schistosoma mansoni]
gi|353233184|emb|CCD80539.1| putative tfiih basal transcription factor complex TTD-A subunit
(General transcription factor IIH polypeptide 5) (TFB5
ortholog) [Schistosoma mansoni]
Length = 73
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHL E LG+ F+ DLD+ HLFI +D++ L +VD L++
Sbjct: 6 KGILVKC--DPAMKQFLLHLAENLVLGKNFVHTDLDDYHLFIDADILSKLQEKVDGLMES 63
Query: 88 ISFPIN 93
+SFP+N
Sbjct: 64 LSFPMN 69
>gi|109478021|ref|XP_001069351.1| PREDICTED: general transcription factor IIH subunit 5-like
[Rattus norvegicus]
gi|392340950|ref|XP_003754206.1| PREDICTED: general transcription factor IIH subunit 5-like
[Rattus norvegicus]
Length = 71
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 23 TNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVD 82
NTL + +I C D KQF L+L+E+N LG++F+IQD+D+TH F+ +++ +L +V
Sbjct: 2 ANTL-KGVLIEC--DSATKQFFLYLNESNALGKKFVIQDIDDTHAFVIVELVNVLQEQVG 58
Query: 83 DLLDQ 87
+L+DQ
Sbjct: 59 ELMDQ 63
>gi|313224631|emb|CBY20422.1| unnamed protein product [Oikopleura dioica]
Length = 73
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 37 DKPMKQFLLHLDETNTLG-RRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
D +KQFLL+LDE G RRFI++DLDETHLF+++D L R+ DL+ + SFPI +
Sbjct: 13 DPALKQFLLNLDEKREFGGRRFILKDLDETHLFVTADCDTWLKGRLADLMTENSFPIGE 71
>gi|60692150|gb|AAX30612.1| SJCHGC05705 protein [Schistosoma japonicum]
Length = 73
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLLHL E LG+ F+ DLD+ HLFI +D++ L +VD L++
Sbjct: 6 KGILVKC--DPAMKQFLLHLAENLILGKNFVHTDLDDYHLFIDADILCKLQEKVDGLMES 63
Query: 88 ISFPI 92
+SFP+
Sbjct: 64 LSFPM 68
>gi|324521395|gb|ADY47843.1| General transcription factor IIH subunit 5 [Ascaris suum]
gi|324528270|gb|ADY48894.1| General transcription factor IIH subunit 5 [Ascaris suum]
Length = 71
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 25 TLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDL 84
+ + ++ C D M+Q L+HLDE+ LG +F++++LDETH+F+ +++ +L ++D L
Sbjct: 3 NVKKGVLVRC--DPAMRQLLVHLDESRALGSKFVVKELDETHIFVDKEIVPILEQKLDQL 60
Query: 85 LDQISFPINDR 95
++ +S N++
Sbjct: 61 MESLSPDHNEK 71
>gi|320162828|gb|EFW39727.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 81
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D +KQFLLHLD RFII D+DETHLF+ + +L T++D++LD+
Sbjct: 5 KGVLIEC--DAAIKQFLLHLDSQQPSETRFIIADVDETHLFVDPPSLPMLQTKLDEMLDK 62
Query: 88 ISF 90
+F
Sbjct: 63 NNF 65
>gi|268575986|ref|XP_002642973.1| Hypothetical protein CBG15257 [Caenorhabditis briggsae]
Length = 72
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 43/59 (72%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
SD +Q L+HLD++ LG +FI+++LD+THLFI D++ +L ++V+ +++ ++ ND
Sbjct: 12 SDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKDIVPMLESKVEQIMENMNPETND 70
>gi|311272932|ref|XP_003133650.1| PREDICTED: general transcription factor IIH subunit 5-like [Sus
scrofa]
Length = 69
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQF L+LDE++ L +FIIQD+D+T +F+ S+++ +L +V +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFFLYLDESSAL--KFIIQDIDDTQVFVISELVNILQEQVGELMDQ 61
Query: 88 ISFPINDR 95
+F + +
Sbjct: 62 NAFSLTQK 69
>gi|402583679|gb|EJW77622.1| REX1 DNA repair family protein [Wuchereria bancrofti]
Length = 71
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D M+Q L++LDE+ TLG +F++++LDETH+ I +++ +L ++D +++
Sbjct: 6 KGVLVRC--DPAMRQLLVYLDESRTLGSKFVVKELDETHILIDKEIVPILEQKLDQMMES 63
Query: 88 ISFPINDR 95
+S + D+
Sbjct: 64 LSPDLTDK 71
>gi|170581802|ref|XP_001895844.1| REX1 DNA Repair family protein [Brugia malayi]
gi|170581806|ref|XP_001895846.1| REX1 DNA Repair family protein [Brugia malayi]
gi|158597075|gb|EDP35305.1| REX1 DNA Repair family protein [Brugia malayi]
gi|158597077|gb|EDP35307.1| REX1 DNA Repair family protein [Brugia malayi]
Length = 71
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D M+Q L++LDE+ TLG +F++++LDETH+ + +++ +L ++D +++
Sbjct: 6 KGVLVRC--DPAMRQLLVYLDESRTLGSKFVVKELDETHILVDKEIVPILEQKLDQMMES 63
Query: 88 ISFPINDR 95
+S + D+
Sbjct: 64 LSPDLTDK 71
>gi|341891992|gb|EGT47927.1| hypothetical protein CAEBREN_17850 [Caenorhabditis brenneri]
Length = 72
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 43/59 (72%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
SD +Q L+HLD++ LG +FII++LD+THLFI +++ +L ++V+ +++ ++ ND
Sbjct: 12 SDPAFRQLLIHLDDSRQLGSKFIIRELDDTHLFIEKEIVPMLESKVEQIMENMNPETND 70
>gi|312067039|ref|XP_003136555.1| hypothetical protein LOAG_00967 [Loa loa]
gi|307768285|gb|EFO27519.1| hypothetical protein LOAG_00967 [Loa loa]
Length = 171
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D M+Q L++LDE+ LG +F++++LDETH+ + +++ +L ++D +++
Sbjct: 106 KGVLVRC--DPAMRQLLVYLDESRALGSKFVVKELDETHILVDKEIVPILEQKLDQMMES 163
Query: 88 ISFPINDR 95
+S ++D+
Sbjct: 164 LSPDLSDK 171
>gi|308481875|ref|XP_003103142.1| hypothetical protein CRE_25692 [Caenorhabditis remanei]
gi|308260518|gb|EFP04471.1| hypothetical protein CRE_25692 [Caenorhabditis remanei]
Length = 72
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 42/59 (71%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
SD +Q L+HLD++ LG +FI+++LD+THLFI +++ L ++V+ +++ ++ ND
Sbjct: 12 SDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPSLESKVEQIMENMNPETND 70
>gi|358339803|dbj|GAA47793.1| TFIIH basal transcription factor complex TTD-A subunit
[Clonorchis sinensis]
Length = 58
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 40 MKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPI 92
MK FLLHL E LG+ F+ DLD+ HLFI D++ L VD L++ +SFP+
Sbjct: 1 MKHFLLHLAENLVLGKNFVHTDLDDYHLFIDPDILGKLQEHVDQLMESLSFPM 53
>gi|17556222|ref|NP_497212.1| Protein Y55B1AL.2 [Caenorhabditis elegans]
gi|351065832|emb|CCD61809.1| Protein Y55B1AL.2 [Caenorhabditis elegans]
Length = 71
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 40/54 (74%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQIS 89
SD +Q L+HLD++ LG +FI+++LD+THLFI +++ +L +V+ +++ ++
Sbjct: 12 SDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQIMENMN 65
>gi|340381075|ref|XP_003389047.1| PREDICTED: general transcription factor IIH subunit 5-like
[Amphimedon queenslandica]
Length = 73
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
D +K+F+ +LDE LG+RFII+DLD+ HLFIS V L ++DDL+ + S+
Sbjct: 13 DTAIKEFIRYLDEKQLLGKRFIIKDLDDHHLFISEGVANHLQGQLDDLMLRNSYS 67
>gi|395818350|ref|XP_003782596.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 5-like [Otolemur garnettii]
Length = 94
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 12 PMKQFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISS 71
P Q H+D+ G +I C D MKQ LL+ DE LG++F++ D D+ H+F+++
Sbjct: 15 PETQHSAHVDDQCLEG--VLIEC--DPTMKQLLLYSDEPRVLGKKFVLXDXDDIHIFVTA 70
Query: 72 DVIELLMTRVDDLLDQISFPINDR 95
+++ +L + L+DQ F + +
Sbjct: 71 EMVNVLQEXMGGLMDQNIFSLTQK 94
>gi|449018827|dbj|BAM82229.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 87
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +++ C D PMKQ LLHLD FII DLDE HLF+ D + L+ V+ L D+
Sbjct: 6 KGYLVRC--DVPMKQLLLHLDREE----HFIICDLDEKHLFVKEDALSLIQQSVEALYDE 59
Query: 88 ISF 90
+ +
Sbjct: 60 VYY 62
>gi|242090297|ref|XP_002440981.1| hypothetical protein SORBIDRAFT_09g018330 [Sorghum bicolor]
gi|241946266|gb|EES19411.1| hypothetical protein SORBIDRAFT_09g018330 [Sorghum bicolor]
Length = 70
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + RFI+ LD TH+F+ V E++ +++ + DQ
Sbjct: 6 KGLFISC--DVPMAQFIVNLNASMPASERFIVHMLDPTHMFVQPHVAEMIRSKIAEFWDQ 63
Query: 88 ISF 90
S+
Sbjct: 64 NSY 66
>gi|452820555|gb|EME27596.1| TFIIH basal transcription factor complex TTD-A subunit [Galdieria
sulphuraria]
Length = 69
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 25 TLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDL 84
L R +I C D PMKQF+L LDE RF+I +LDET LFI S ++L+ ++++L
Sbjct: 3 NLLRGVLITC--DIPMKQFILKLDEDQA-PNRFVIANLDETSLFIQSWALKLVQEKLEEL 59
Query: 85 LDQISF 90
++ F
Sbjct: 60 YEENYF 65
>gi|225470287|ref|XP_002266482.1| PREDICTED: general transcription factor IIH subunit 5 [Vitis
vinifera]
gi|297742669|emb|CBI34818.3| unnamed protein product [Vitis vinifera]
Length = 70
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++++ + ++FII LD THLF+ V E++ + + + +Q
Sbjct: 6 KGLFISC--DIPMAQFIINMNASMPASQKFIIHVLDSTHLFVQPHVAEMIRSAISEFREQ 63
Query: 88 ISF 90
S+
Sbjct: 64 NSY 66
>gi|348675885|gb|EGZ15703.1| hypothetical protein PHYSODRAFT_333915 [Phytophthora sojae]
Length = 72
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 25 TLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSD--VIELLMTRVD 82
T + ++ C D KQ+LLHL+ET + +RF+I+DLD+ HLFI D VI + ++D
Sbjct: 3 TANKGVLVKC--DPATKQYLLHLNET-AVQQRFVIEDLDDRHLFIVPDPKVIAFIEKKMD 59
Query: 83 DLLDQISF 90
+ ++ ++
Sbjct: 60 EWNEKNTY 67
>gi|357130141|ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like [Brachypodium
distachyon]
Length = 457
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 30 FIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQIS 89
I C D PM QF+++L+ + +FI+ LD TH+F+ V E++ +++ + DQ S
Sbjct: 8 LFISC--DVPMAQFIVNLNASMPASEKFIVHMLDPTHMFVQPHVGEMIRSKIAEFRDQNS 65
Query: 90 F 90
+
Sbjct: 66 Y 66
>gi|58568923|gb|AAW79008.1| GekBS162P [Gekko japonicus]
Length = 72
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLD-ETHLFISSDVIELLMTRVDDLLD 86
+ +I C D MKQ G++FII L +TH+F+ ++++ L +V +L+D
Sbjct: 6 KGILIEC--DPAMKQSCCTWMSPMPWGKKFIITRLGMKTHVFVLAEMVNCLQEKVGELMD 63
Query: 87 QISFPINDR 95
Q SFPI +
Sbjct: 64 QNSFPITQK 72
>gi|115472939|ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|34393555|dbj|BAC83153.1| unknown protein [Oryza sativa Japonica Group]
gi|113611604|dbj|BAF21982.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|215707252|dbj|BAG93712.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199880|gb|EEC82307.1| hypothetical protein OsI_26568 [Oryza sativa Indica Group]
gi|222637319|gb|EEE67451.1| hypothetical protein OsJ_24828 [Oryza sativa Japonica Group]
Length = 131
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 32 IHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
I C D PM QF+++L+ + +FI+ LD TH+F+ V E++ +++ + DQ S+
Sbjct: 71 ISC--DVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKISEFRDQNSY 127
>gi|384251483|gb|EIE24961.1| hypothetical protein COCSUDRAFT_83653 [Coccomyxa subellipsoidea
C-169]
Length = 71
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R ++ C D P K+F+L L+++ RF+I DLD+T LF+ V+E L R+ + ++
Sbjct: 2 RGVLLQC--DVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEE 59
Query: 88 ISF 90
++
Sbjct: 60 NTY 62
>gi|413942351|gb|AFW75000.1| hypothetical protein ZEAMMB73_769025 [Zea mays]
Length = 142
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
SD PM QF+++L+ + RFI+ LD T++F+ V ++ +++ + DQ S+
Sbjct: 84 SDVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQNSY 138
>gi|218196244|gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indica Group]
gi|222630525|gb|EEE62657.1| hypothetical protein OsJ_17460 [Oryza sativa Japonica Group]
Length = 81
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + +FI+ LD TH+F+ V E++ ++ + DQ
Sbjct: 17 KGLFISC--DVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRGKISEFRDQ 74
Query: 88 ISF 90
S+
Sbjct: 75 NSY 77
>gi|15221323|ref|NP_172702.1| basal transcription factor complex TTD-A subunit [Arabidopsis
thaliana]
gi|38566546|gb|AAR24163.1| At1g12400 [Arabidopsis thaliana]
gi|40823747|gb|AAR92302.1| At1g12400 [Arabidopsis thaliana]
gi|332190754|gb|AEE28875.1| basal transcription factor complex TTD-A subunit [Arabidopsis
thaliana]
Length = 71
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D PM QF+++++ + ++FII LD THLF+ V +++ + + D DQ S+
Sbjct: 13 DIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDFRDQNSY 66
>gi|297844104|ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata]
gi|297335775|gb|EFH66192.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata]
Length = 71
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D PM QF+++++ + ++FII LD THLF+ V +++ + + D DQ S+
Sbjct: 13 DIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDFRDQNSY 66
>gi|8778626|gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana]
Length = 113
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D PM QF+++++ + ++FII LD THLF+ V +++ + + D DQ S+
Sbjct: 55 DIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDFRDQNSY 108
>gi|449460439|ref|XP_004147953.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cucumis sativus]
gi|449494289|ref|XP_004159503.1| PREDICTED: general transcription factor IIH subunit 5-like
[Cucumis sativus]
Length = 70
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D PM QF+++ + + RFII LD TH+F+ V +++ + + +QIS+
Sbjct: 13 DIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFREQISY 66
>gi|171692051|ref|XP_001910950.1| hypothetical protein [Podospora anserina S mat+]
gi|170945974|emb|CAP72775.1| unnamed protein product [Podospora anserina S mat+]
Length = 79
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C + +K L+H+D T L II+DLDETHL + +++ L R+D+ L +
Sbjct: 6 RGVLIEC--EPAIKSILIHIDSTQ-LNNDAIIEDLDETHLMVKEQMVKTLQARLDEKLKE 62
Query: 88 ---ISFPINDRD 96
+ P++D D
Sbjct: 63 TYRVEVPLDDSD 74
>gi|388854298|emb|CCF52041.1| related to TFB5-component of general transcription and DNA repair
factor TFIIH [Ustilago hordei]
Length = 65
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPI 92
D +KQ +L LDE N RFII DLDETHL IS D I+ L + ++ L++ ++ +
Sbjct: 12 DAAVKQLILSLDERN----RFIIMDLDETHLLISPDRIDWLRSELEVELEKNTYTL 63
>gi|406700233|gb|EKD03410.1| hypothetical protein A1Q2_02297 [Trichosporon asahii var. asahii
CBS 8904]
Length = 76
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D KQ LLHLD T +FI D+DETHL + ++ +E + + + L++ ++
Sbjct: 14 LITC--DSAAKQILLHLDSQRTGNYKFISADIDETHLLVRTEAVEEIKAALQEELEKNTY 71
>gi|401886221|gb|EJT50272.1| hypothetical protein A1Q1_00466 [Trichosporon asahii var. asahii
CBS 2479]
Length = 71
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D KQ LLHLD T +FI D+DETHL + ++ +E + + + L++ ++
Sbjct: 12 GDSAAKQILLHLDSQRTGNYKFISADIDETHLLVRTEAVEEIKAALQEELEKNTY 66
>gi|224125074|ref|XP_002329886.1| predicted protein [Populus trichocarpa]
gi|222871123|gb|EEF08254.1| predicted protein [Populus trichocarpa]
Length = 70
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + ++FII LD TH+F+ V +++ + + D +Q
Sbjct: 6 KGLFISC--DIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDFREQ 63
Query: 88 ISF 90
S+
Sbjct: 64 NSY 66
>gi|71018489|ref|XP_759475.1| hypothetical protein UM03328.1 [Ustilago maydis 521]
gi|46098963|gb|EAK84196.1| hypothetical protein UM03328.1 [Ustilago maydis 521]
Length = 109
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVD 82
D +KQ +L LDE N RFII DLDETHL IS D I+ L ++
Sbjct: 59 DAAVKQLILSLDERN----RFIIMDLDETHLLISPDRIDWLRAELE 100
>gi|219120973|ref|XP_002185718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582567|gb|ACI65188.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 111
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 12 PMKQFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISS 71
P + +H D+ +++ C D P KQF+ HL++ + ++FI+QDLD THL +
Sbjct: 22 PRHRPKIHNDDDLPPSAGYLVSC--DVPTKQFIQHLNDLKPVDKKFILQDLDATHLLVEL 79
Query: 72 DVIELLMTRVDDLLDQISF 90
+ + +V++ D F
Sbjct: 80 KARDEIRRKVEEWEDSNVF 98
>gi|413942352|gb|AFW75001.1| REX1 DNA Repair family protein [Zea mays]
Length = 154
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 32 IHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
I C D PM QF+++L+ + RFI+ LD T++F+ V ++ +++ + DQ S+
Sbjct: 94 ISC--DVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQNSY 150
>gi|319411700|emb|CBQ73744.1| related to TFB5-component of general transcription and DNA repair
factor TFIIH [Sporisorium reilianum SRZ2]
Length = 65
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPI 92
D +KQ +L LDE N RFII DLD+THL IS D I+ L +D L++ ++ +
Sbjct: 12 DAAVKQLILSLDERN----RFIIMDLDDTHLLISPDRIDWLRAELDVELEKNTYTL 63
>gi|255073357|ref|XP_002500353.1| predicted protein [Micromonas sp. RCC299]
gi|226515616|gb|ACO61611.1| predicted protein [Micromonas sp. RCC299]
Length = 75
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+D P K ++LH++E RF+IQDLDETHL + +E + V + F
Sbjct: 12 TDIPCKVYILHINEQLPPAERFVIQDLDETHLLVQPHRLEYVKAEVKAWQQKNQF 66
>gi|413942350|gb|AFW74999.1| REX1 DNA Repair family protein, partial [Zea mays]
Length = 132
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
D PM QF+++L+ + RFI+ LD T++F+ V ++ +++ + DQ S+
Sbjct: 75 DVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQNSY 128
>gi|85541643|sp|Q4P985.2|TFB5_USTMA RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
Length = 62
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVD 82
D +KQ +L LDE N RFII DLDETHL IS D I+ L ++
Sbjct: 12 DAAVKQLILSLDERN----RFIIMDLDETHLLISPDRIDWLRAELE 53
>gi|226503747|ref|NP_001148022.1| REX1 DNA Repair family protein [Zea mays]
gi|195615234|gb|ACG29447.1| REX1 DNA Repair family protein [Zea mays]
gi|195628074|gb|ACG35867.1| REX1 DNA Repair family protein [Zea mays]
gi|195639980|gb|ACG39458.1| REX1 DNA Repair family protein [Zea mays]
gi|413942353|gb|AFW75002.1| REX1 DNA Repair family protein [Zea mays]
Length = 70
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + RFI+ LD T++F+ V ++ +++ + DQ
Sbjct: 6 KGLFISC--DVPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQ 63
Query: 88 ISF 90
S+
Sbjct: 64 NSY 66
>gi|328767688|gb|EGF77737.1| hypothetical protein BATDEDRAFT_91498 [Batrachochytrium
dendrobatidis JAM81]
Length = 66
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 28 RRFIIHCF-SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLD 86
R I++ F SD+ +KQ + LD FII+DLD+THLFI + +EL+ R++D+L+
Sbjct: 3 RATILYLFTSDQAVKQIIKELDS----QLHFIIEDLDDTHLFIEAAKVELVQDRLEDILE 58
Query: 87 QIS 89
S
Sbjct: 59 VFS 61
>gi|242086587|ref|XP_002439126.1| hypothetical protein SORBIDRAFT_09g000940 [Sorghum bicolor]
gi|241944411|gb|EES17556.1| hypothetical protein SORBIDRAFT_09g000940 [Sorghum bicolor]
Length = 70
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + RFI+ LD T++F+ V ++ +++ + DQ
Sbjct: 6 KGLFISC--DIPMAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQ 63
Query: 88 ISF 90
S+
Sbjct: 64 NSY 66
>gi|367024019|ref|XP_003661294.1| hypothetical protein MYCTH_2116689 [Myceliophthora thermophila
ATCC 42464]
gi|347008562|gb|AEO56049.1| hypothetical protein MYCTH_2116689 [Myceliophthora thermophila
ATCC 42464]
Length = 73
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R ++ C + +K L+H+D T+ FII+DLDETHLF+ ++++L ++++ L +
Sbjct: 6 RGVLVEC--EPAIKSILVHIDSTH--HHEFIIEDLDETHLFVKETMLQVLKQKLEERLKE 61
Query: 88 ISFP 91
P
Sbjct: 62 TYRP 65
>gi|326515518|dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 71
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++++ + +FI+ LD TH+FI ++ + + +++ + DQ
Sbjct: 7 KGLFISC--DIPMAQFIVNMNASMPASDKFIVHILDPTHMFIQPNMGDYIKSKMAEFRDQ 64
Query: 88 ISF 90
S+
Sbjct: 65 NSY 67
>gi|168009904|ref|XP_001757645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009908|ref|XP_001757647.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691339|gb|EDQ77702.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691341|gb|EDQ77704.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 73
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D PM Q L+ ++++ +FI+ LD+TH+++ DV ++L +++ + DQ
Sbjct: 6 KGILVTC--DIPMAQLLISINDSMPNAHKFIVYMLDDTHIYVQPDVGKMLQSKLQEFRDQ 63
Query: 88 ISF 90
++
Sbjct: 64 NTY 66
>gi|119625039|gb|EAX04634.1| sorbin and SH3 domain containing 2, isoform CRA_d [Homo sapiens]
Length = 76
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 56 RFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95
+FI+QD+D TH+F+ ++++ +L R +L+DQ +F + +
Sbjct: 37 KFIMQDIDATHVFVIAELVNVLQERAGELMDQNAFSLTQK 76
>gi|353244120|emb|CCA75569.1| hypothetical protein PIIN_09559 [Piriformospora indica DSM 11827]
Length = 136
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 31 IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
+I C D +KQ LL ++E RF+I+DLD+THL I +D E + ++ L++ ++
Sbjct: 75 LITC--DAAVKQILLQMNERRRDEDRFVIEDLDQTHLLIKADGEENMRAELESELEKNTY 132
Query: 91 PI 92
+
Sbjct: 133 SL 134
>gi|224105117|ref|XP_002313692.1| predicted protein [Populus trichocarpa]
gi|222850100|gb|EEE87647.1| predicted protein [Populus trichocarpa]
Length = 70
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + ++F+I LD +H+F+ V E++ + D +Q
Sbjct: 6 KGLFISC--DIPMVQFIINLNASLPALQKFVIHILDSSHMFVQPHVSEMIRSATADFREQ 63
Query: 88 ISF 90
S+
Sbjct: 64 NSY 66
>gi|440802356|gb|ELR23285.1| RNA polymerase II transcription factor B subunit 5, putative
[Acanthamoeba castellanii str. Neff]
Length = 69
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ ++ C D MKQFLL LD+ + FII+DLDETHL + + L+ +++++ ++
Sbjct: 6 KGVLVTC--DATMKQFLLFLDKEH----HFIIKDLDETHLLVDAAKATLIQEKMNEMYEE 59
Query: 88 ISF-PI 92
++ PI
Sbjct: 60 NTYVPI 65
>gi|195639910|gb|ACG39423.1| hypothetical protein [Zea mays]
Length = 55
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 40 MKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISF 90
M QF+++L+ + RFI+ LD T++F+ V ++ +++ + DQ S+
Sbjct: 1 MAQFIVNLNASMPPSERFIVHMLDPTNMFVQPHVAHMIRSKIGEFRDQNSY 51
>gi|356527853|ref|XP_003532521.1| PREDICTED: uncharacterized protein LOC100785713 [Glycine max]
Length = 157
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 5 CNYVDDKPMKQFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDE 64
C D KQF L + I C D PM Q++++++ + +FII LD
Sbjct: 70 CLAGDRHEEKQFTGRLYNMVNATKGVFISC--DIPMAQYIINMNASLPASDKFIIHILDN 127
Query: 65 THLFISSDVIELLMTRV 81
TH+F+ V +++ +R+
Sbjct: 128 THMFVQPHVEQMIRSRI 144
>gi|145354356|ref|XP_001421453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581690|gb|ABO99746.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 75
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELL 77
+D P+KQ++LHL++ R+F++ DLD + + D ++ +
Sbjct: 12 ADVPIKQYILHLNDVAPAERKFVVVDLDARRVLVQPDAVDAI 53
>gi|392576801|gb|EIW69931.1| hypothetical protein TREMEDRAFT_29558 [Tremella mesenterica DSM
1558]
Length = 73
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 26 LGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELL 77
L +I C D KQ LLH+D +FI++D+DETH+ + + IE++
Sbjct: 12 LTSGVLITC--DSAAKQILLHIDSQRDGPSKFILRDIDETHVLVKKEHIEIM 61
>gi|440903273|gb|ELR53957.1| General transcription factor IIH subunit 5 [Bos grunniens mutus]
Length = 431
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHL 67
D M FLL+LDE+N G++ II+D+DE L
Sbjct: 401 DPAMGLFLLYLDESNAPGKKLIIEDIDEPSL 431
>gi|297604025|ref|NP_001054876.2| Os05g0198700 [Oryza sativa Japonica Group]
gi|255676118|dbj|BAF16790.2| Os05g0198700 [Oryza sativa Japonica Group]
Length = 121
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ I C D PM QF+++L+ + +FI+ LD TH+F+ V E++ ++ +
Sbjct: 62 KGLFISC--DVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIR---EEAVAT 116
Query: 88 ISFP 91
SFP
Sbjct: 117 ESFP 120
>gi|123967374|ref|XP_001276879.1| transcription factor IIH [Trichomonas vaginalis G3]
gi|121918865|gb|EAY23631.1| transcription factor IIH, putative [Trichomonas vaginalis G3]
Length = 84
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 32 IHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
I C +D ++++L+ L+ +FII D+D+ +LFI + V + L +++ L+ +F
Sbjct: 12 IEC-TDPAIREYLIFLNSKEPAEHKFIITDIDDRYLFIKAGVSDKLKEKINLLVTSNTFS 70
Query: 92 INDRD 96
DRD
Sbjct: 71 EEDRD 75
>gi|358058159|dbj|GAA96045.1| hypothetical protein E5Q_02706 [Mixia osmundae IAM 14324]
Length = 157
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIE 75
D +KQ +L LDE + +FII DLDETHL ++++ +E
Sbjct: 13 DAAVKQIILQLDERD----KFIIADLDETHLLVATERVE 47
>gi|323446700|gb|EGB02768.1| hypothetical protein AURANDRAFT_68580 [Aureococcus anophagefferens]
Length = 422
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C D P ++F+LHL+ET+ F++Q+LDE L I ++ + L++
Sbjct: 357 RGTLIQC--DGPTREFVLHLNETHN----FLLQELDEKTLLIDGSFSAMVQAELAKSLER 410
Query: 88 ISFPINDRD 96
F +++
Sbjct: 411 HVFSTKNKE 419
>gi|308811947|ref|XP_003083281.1| unnamed protein product [Ostreococcus tauri]
gi|116055160|emb|CAL57556.1| unnamed protein product [Ostreococcus tauri]
Length = 75
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIE 75
+D P+KQ++LHLD +F+I DLDE + I + E
Sbjct: 12 TDVPIKQYVLHLDAIAPAEGKFVIADLDERRVLIQPERAE 51
>gi|116180178|ref|XP_001219938.1| hypothetical protein CHGG_00717 [Chaetomium globosum CBS 148.51]
gi|88185014|gb|EAQ92482.1| hypothetical protein CHGG_00717 [Chaetomium globosum CBS 148.51]
Length = 87
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDL 84
+ +K L+H+D T+ FII+DLD+THLF+ ++++L ++++++
Sbjct: 9 EPAIKSILVHIDSTH--HHEFIIEDLDDTHLFVKEAMLQVLKSKLEEV 54
>gi|384487580|gb|EIE79760.1| hypothetical protein RO3G_04465 [Rhizopus delemar RA 99-880]
Length = 57
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 52 TLGRR--FIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIN 93
L +R F+I+DLD+THLFI + ++ L +D +LD+ S+ I+
Sbjct: 5 NLNKRGNFVIEDLDDTHLFIEASWVDQLKYELDKILDENSYTIS 48
>gi|328858931|gb|EGG08042.1| hypothetical protein MELLADRAFT_85226 [Melampsora larici-populina
98AG31]
Length = 83
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 37 DKPMKQFLLHLDE-------TNTLGRRFIIQDLDETHLFISSDVIELLMTRVD 82
D +KQ +L L++ TN L FI+QDLD+THL ++ D I L ++
Sbjct: 13 DPAVKQLILSLNDKPANSISTNGLVPPFIVQDLDDTHLLVTQDCIGPLRAEIE 65
>gi|443897742|dbj|GAC75081.1| hypothetical protein PANT_14c00027 [Pseudozyma antarctica T-34]
Length = 80
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 19 HLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLM 78
HL E GRR +L LDE N RFII DLD+THL IS + I+ L
Sbjct: 11 HLLEPAPSGRRSKDEGVQRHATYMLILSLDERN----RFIIMDLDDTHLLISPERIDWLR 66
Query: 79 TRVD 82
+ ++
Sbjct: 67 SELE 70
>gi|340923749|gb|EGS18652.1| hypothetical protein CTHT_0052580 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 72
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C + +K ++HLD N FII+DLD+ HL + +++++L +++D L +
Sbjct: 6 RGVLIEC--EPAIKSIIVHLDSIN---HDFIIEDLDDHHLVVKENMVQILKQKLEDRLRE 60
Query: 88 ISFP 91
P
Sbjct: 61 TYRP 64
>gi|395226328|ref|ZP_10404814.1| translation elongation factor TU [Thiovulum sp. ES]
gi|394445454|gb|EJF06364.1| translation elongation factor TU [Thiovulum sp. ES]
Length = 399
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ +++ L ++IEL+ + +LLDQ FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFMNKEDLVDDEELIELVEMEIRELLDQYEFPGDD 167
>gi|134107222|ref|XP_777741.1| hypothetical protein CNBA6190 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260437|gb|EAL23094.1| hypothetical protein CNBA6190 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 67
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELL 77
D KQ LLHLD +F+I+D+DE + + + +E+L
Sbjct: 19 DSAAKQILLHLDSMRDGPHKFVIRDVDENRVMVKKEYVEML 59
>gi|66826077|ref|XP_646393.1| transcription initiation factor IIH5 [Dictyostelium discoideum
AX4]
gi|74858501|sp|Q55CT8.1|TF2H5_DICDI RecName: Full=General transcription factor IIH subunit 5;
AltName: Full=TFIIH basal transcription factor complex
subunit 5
gi|60474366|gb|EAL72303.1| transcription initiation factor IIH5 [Dictyostelium discoideum
AX4]
Length = 72
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSD---VIELLMTRVDDLLDQISFPIN 93
D P KQF+ ++ + F + LDETHLF+ VI + R+DDL +Q ++ +
Sbjct: 13 DPPTKQFVEYISKQ----EHFEVIVLDETHLFLQGGDEKVINSIQRRIDDLQNQNTYSVF 68
Query: 94 DRD 96
D+D
Sbjct: 69 DKD 71
>gi|357488599|ref|XP_003614587.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355515922|gb|AES97545.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 133
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDL 84
D PM QF++ ++ + +FII LD TH+F+ V +++ +++
Sbjct: 13 DIPMAQFIIKMNASFPTSDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60
>gi|330843024|ref|XP_003293465.1| hypothetical protein DICPUDRAFT_42067 [Dictyostelium purpureum]
gi|325076213|gb|EGC30019.1| hypothetical protein DICPUDRAFT_42067 [Dictyostelium purpureum]
Length = 72
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISS---DVIELLMTRVDDLLDQISFPIN 93
D P KQF+ ++ + F + LDETHLF+ + +I + R+DDL +Q ++ +
Sbjct: 13 DPPTKQFVEYISKQ----EHFEVIVLDETHLFLQAADEKIINTIQRRIDDLQNQNTYSVF 68
Query: 94 DRD 96
D+D
Sbjct: 69 DKD 71
>gi|405118013|gb|AFR92788.1| hypothetical protein CNAG_00659 [Cryptococcus neoformans var.
grubii H99]
Length = 78
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELL 77
D KQ LLHLD +F+I+D+DE + I + +E++
Sbjct: 19 DSAAKQILLHLDSMRDGPSKFVIRDVDENRVMIKKEYVEMI 59
>gi|85099974|ref|XP_960879.1| hypothetical protein NCU06646 [Neurospora crassa OR74A]
gi|336262450|ref|XP_003346009.1| hypothetical protein SMAC_06562 [Sordaria macrospora k-hell]
gi|74622801|sp|Q8X0V0.1|TFB5_NEUCR RecName: Full=RNA polymerase II transcription factor B subunit 5;
AltName: Full=General transcription and DNA repair
factor IIH subunit 5; Short=TFIIH subunit 5
gi|18307431|emb|CAD21494.1| conserved hypothetical protein [Neurospora crassa]
gi|28922409|gb|EAA31643.1| predicted protein [Neurospora crassa OR74A]
gi|380089602|emb|CCC12484.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 72
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C + +K ++HLD N II+DLDE L + ++++LL +++D L +
Sbjct: 6 RGVLIQC--EPAIKSIIVHLDSVNN---DIIIEDLDEQTLVVKENMVQLLKQKLEDRLKE 60
Query: 88 ISFP 91
P
Sbjct: 61 TYRP 64
>gi|302876536|ref|YP_003845169.1| translation elongation factor Tu [Clostridium cellulovorans 743B]
gi|302876550|ref|YP_003845183.1| translation elongation factor Tu [Clostridium cellulovorans 743B]
gi|302579393|gb|ADL53405.1| translation elongation factor Tu [Clostridium cellulovorans 743B]
gi|302579407|gb|ADL53419.1| translation elongation factor Tu [Clostridium cellulovorans 743B]
Length = 397
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ ++ +G ++I+ L++ + +++EL+ V +LLD+ FP +D
Sbjct: 109 ADGPMPQTREHILLSSRVGVQYIVVFLNKADMVDDPELLELVEMEVRELLDEYGFPGDD 167
>gi|307691072|ref|ZP_07633518.1| translation elongation factor Tu [Clostridium cellulovorans 743B]
Length = 401
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ ++ +G ++I+ L++ + +++EL+ V +LLD+ FP +D
Sbjct: 113 ADGPMPQTREHILLSSRVGVQYIVVFLNKADMVDDPELLELVEMEVRELLDEYGFPGDD 171
>gi|186492598|ref|NP_001117537.1| Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis
thaliana]
gi|332195897|gb|AEE34018.1| Nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis
thaliana]
Length = 72
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 32 IHCFSDKPMKQFLLHLDETNTLGRRFIIQ--DLDETHLFISSDVIELLMTRVDDLLDQIS 89
I C D PM QF+ HL+ + ++FIIQ LD T +F+ E++ V D+ S
Sbjct: 10 ISC--DVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVIKFRDENS 67
Query: 90 F 90
+
Sbjct: 68 Y 68
>gi|357488601|ref|XP_003614588.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355515923|gb|AES97546.1| General transcription factor IIH subunit [Medicago truncatula]
gi|388522225|gb|AFK49174.1| unknown [Medicago truncatula]
Length = 70
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRV 81
D PM Q++++++ + +FII LD TH+F+ V +++ +++
Sbjct: 13 DIPMAQYIVNMNASLPASDKFIIHILDSTHMFVQPHVEQMIRSQI 57
>gi|388858498|emb|CCF47982.1| uncharacterized protein [Ustilago hordei]
Length = 618
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 2 EIYCNYVDDKPMKQFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQD 61
E + +VDDKP Q++ + E T G +H F+ KQ + G ++++D
Sbjct: 102 EKFAGFVDDKPFVQYVRLMRENGTYGGHLELHAFAQMKQKQI-----KIVQPGLVYVVED 156
Query: 62 LDET 65
+D++
Sbjct: 157 VDDS 160
>gi|429205132|ref|ZP_19196409.1| elongation factor Tu [Lactobacillus saerimneri 30a]
gi|428146204|gb|EKW98443.1| elongation factor Tu [Lactobacillus saerimneri 30a]
Length = 395
Score = 35.0 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ +G ++I+ L++T L ++++L+ V DLL + FP +D
Sbjct: 109 TDGPMPQTREHILLARQVGVQYIVVFLNKTDLVDDEELLDLVEMEVRDLLSEYDFPGDD 167
>gi|340515353|gb|EGR45608.1| predicted protein [Trichoderma reesei QM6a]
Length = 71
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C D +K ++++D N FII+DLDE + + ++++LL +++D L +
Sbjct: 6 RGVLIEC--DPSIKSIIVNIDSVN---HDFIIEDLDEERVVVKENMVQLLKQKLEDRLKE 60
Query: 88 ISFPIND 94
P+++
Sbjct: 61 NLPPVDE 67
>gi|343427583|emb|CBQ71110.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 613
Score = 34.3 bits (77), Expect = 9.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 2 EIYCNYVDDKPMKQFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQD 61
E + +VDDKP Q++ + E T G +H F+ KQ + G ++++
Sbjct: 102 EKFAGFVDDKPFDQYIRLMRENGTYGGHLELHAFAQMKQKQI-----KIVQPGLVYVVEG 156
Query: 62 LDET 65
+D+T
Sbjct: 157 VDDT 160
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.146 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,426,892,091
Number of Sequences: 23463169
Number of extensions: 51060471
Number of successful extensions: 145326
Number of sequences better than 100.0: 194
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 145015
Number of HSP's gapped (non-prelim): 326
length of query: 96
length of database: 8,064,228,071
effective HSP length: 65
effective length of query: 31
effective length of database: 6,539,122,086
effective search space: 202712784666
effective search space used: 202712784666
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)