BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2291
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKH0|TF2H5_CHICK General transcription factor IIH subunit 5 OS=Gallus gallus
GN=GTF2H5 PE=3 SV=1
Length = 71
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQDLDETH+F+ ++++ L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGELMDQ 63
Query: 88 ISFPINDR 95
SFPI +
Sbjct: 64 NSFPITQK 71
>sp|Q6ZYL4|TF2H5_HUMAN General transcription factor IIH subunit 5 OS=Homo sapiens
GN=GTF2H5 PE=1 SV=1
Length = 71
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>sp|Q2T9Z5|TF2H5_BOVIN General transcription factor IIH subunit 5 OS=Bos taurus
GN=GTF2H5 PE=3 SV=1
Length = 71
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE+N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>sp|Q8K2X8|TF2H5_MOUSE General transcription factor IIH subunit 5 OS=Mus musculus
GN=Gtf2h5 PE=1 SV=1
Length = 71
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
+ +I C D MKQFLL+LDE N LG++FIIQD+D+TH+F+ ++++ +L RV +L+DQ
Sbjct: 6 KGVLIEC--DPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQ 63
Query: 88 ISFPINDR 95
+F + +
Sbjct: 64 NAFSLTQK 71
>sp|Q4P985|TFB5_USTMA RNA polymerase II transcription factor B subunit 5 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TFB5 PE=3 SV=2
Length = 62
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVD 82
D +KQ +L LDE N RFII DLDETHL IS D I+ L ++
Sbjct: 12 DAAVKQLILSLDERN----RFIIMDLDETHLLISPDRIDWLRAELE 53
>sp|Q8R7V2|EFTU1_THETN Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=tufA PE=3
SV=1
Length = 400
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ +G +I+ L++ + ++IEL+ V DLL+Q FP +D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDPELIELVEMEVRDLLNQYEFPGDD 167
>sp|Q55CT8|TF2H5_DICDI General transcription factor IIH subunit 5 OS=Dictyostelium
discoideum GN=gtf2h5 PE=3 SV=1
Length = 72
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSD---VIELLMTRVDDLLDQISFPIN 93
D P KQF+ ++ + F + LDETHLF+ VI + R+DDL +Q ++ +
Sbjct: 13 DPPTKQFVEYISKQ----EHFEVIVLDETHLFLQGGDEKVINSIQRRIDDLQNQNTYSVF 68
Query: 94 DRD 96
D+D
Sbjct: 69 DKD 71
>sp|Q8X0V0|TFB5_NEUCR RNA polymerase II transcription factor B subunit 5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tfb-5 PE=3 SV=1
Length = 72
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C + +K ++HLD N II+DLDE L + ++++LL +++D L +
Sbjct: 6 RGVLIQC--EPAIKSIIVHLDSVNN---DIIIEDLDEQTLVVKENMVQLLKQKLEDRLKE 60
Query: 88 ISFP 91
P
Sbjct: 61 TYRP 64
>sp|Q7M7F1|EFTU_CHRVO Elongation factor Tu OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=tuf1 PE=3 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +II L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIIVYLNKADLVDDAELLELVEMEVRDLLSSYDFPGDD 167
>sp|Q8R7T8|EFTU2_THETN Elongation factor Tu-B OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=tufB PE=3
SV=1
Length = 400
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
+D PM Q H+ +G +I+ L++ + ++IEL+ V DLL+Q FP
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFLNKADMVDDPELIELVEMEVRDLLNQYEFP 164
>sp|A1VIP8|EFTU_POLNA Elongation factor Tu OS=Polaromonas naphthalenivorans (strain CJ2)
GN=tuf1 PE=3 SV=1
Length = 396
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ +G +II L++ + ++++EL+ V +LLD+ FP +D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLDKYDFPGDD 167
>sp|Q7VJ74|EFTU_HELHP Elongation factor Tu OS=Helicobacter hepaticus (strain ATCC 51449 /
3B1) GN=tuf PE=3 SV=1
Length = 399
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V +LL Q FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVHYIVVFLNKQDMVDDAELLELVEMEVRELLSQYDFPGDD 167
>sp|P09591|EFTU_PSEAE Elongation factor Tu OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=tufA PE=3 SV=2
Length = 397
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL+ FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLNTYDFPGDD 167
>sp|Q02T82|EFTU_PSEAB Elongation factor Tu OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=tuf1 PE=3 SV=1
Length = 397
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL+ FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLNTYDFPGDD 167
>sp|A6UZH4|EFTU_PSEA7 Elongation factor Tu OS=Pseudomonas aeruginosa (strain PA7) GN=tuf1
PE=3 SV=2
Length = 397
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL+ FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLNTYDFPGDD 167
>sp|Q889X3|EFTU_PSESM Elongation factor Tu OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=tuf PE=3 SV=1
Length = 397
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q4ZMP2|EFTU_PSEU2 Elongation factor Tu OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=tuf PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q3J8Q0|EFTU_NITOC Elongation factor Tu OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=tuf1 PE=3 SV=1
Length = 396
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ +G FI+ L++ + +++EL+ V +LLD FP +D
Sbjct: 109 ADGPMPQTREHILLARQVGVPFILVYLNKADMVDDPELLELVEMEVRELLDSYQFPGDD 167
>sp|A5EX84|EFTU_DICNV Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A)
GN=tuf PE=3 SV=1
Length = 396
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +II L++ + ++++EL+ V +LL++ FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLNEYDFPGDD 167
>sp|Q1IFW8|EFTU_PSEE4 Elongation factor Tu OS=Pseudomonas entomophila (strain L48)
GN=tuf1 PE=1 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q48D34|EFTU_PSE14 Elongation factor Tu OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=tuf PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q88QN7|EFTU2_PSEPK Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440)
GN=tufB PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q3K5X4|EFTU_PSEPF Elongation factor Tu OS=Pseudomonas fluorescens (strain Pf0-1)
GN=tuf1 PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|C3K2X8|EFTU_PSEFS Elongation factor Tu OS=Pseudomonas fluorescens (strain SBW25)
GN=tuf PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVYLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|B1JDW6|EFTU_PSEPW Elongation factor Tu OS=Pseudomonas putida (strain W619) GN=tuf1
PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|B0KK53|EFTU_PSEPG Elongation factor Tu OS=Pseudomonas putida (strain GB-1) GN=tuf1
PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|A5VXN3|EFTU_PSEP1 Elongation factor Tu OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=tuf PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q88QP8|EFTU1_PSEPK Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440)
GN=tufA PE=3 SV=1
Length = 397
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ L ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADLVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q8EK70|EFTU2_SHEON Elongation factor Tu 2 OS=Shewanella oneidensis (strain MR-1)
GN=tuf2 PE=3 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|A0KRL0|EFTU_SHESA Elongation factor Tu OS=Shewanella sp. (strain ANA-3) GN=tuf1 PE=3
SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|Q8EK81|EFTU1_SHEON Elongation factor Tu 1 OS=Shewanella oneidensis (strain MR-1)
GN=tuf1 PE=3 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|Q0I0A7|EFTU2_SHESR Elongation factor Tu 2 OS=Shewanella sp. (strain MR-7) GN=tuf2 PE=3
SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|Q0HNT9|EFTU2_SHESM Elongation factor Tu 2 OS=Shewanella sp. (strain MR-4) GN=tuf2 PE=3
SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|Q0I0B9|EFTU1_SHESR Elongation factor Tu 1 OS=Shewanella sp. (strain MR-7) GN=tuf1 PE=3
SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|Q0HNV1|EFTU1_SHESM Elongation factor Tu 1 OS=Shewanella sp. (strain MR-4) GN=tuf1 PE=3
SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G FII +++ + ++++EL+ V +LL + FP +D
Sbjct: 109 TDGPMPQTREHILLSRQVGVPFIIVFMNKCDMVDDAELLELVEMEVRELLSEYDFPGDD 167
>sp|A4VHL6|EFTU1_PSEU5 Elongation factor Tu 1 OS=Pseudomonas stutzeri (strain A1501)
GN=tuf1 PE=3 SV=1
Length = 397
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|A4VHM8|EFTU2_PSEU5 Elongation factor Tu 2 OS=Pseudomonas stutzeri (strain A1501)
GN=tuf2 PE=3 SV=1
Length = 397
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|A2SLF9|EFTU_METPP Elongation factor Tu OS=Methylibium petroleiphilum (strain PM1)
GN=tuf1 PE=3 SV=1
Length = 396
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
+D PM Q H+ +G +II L++ + ++++EL+ V +LLD+ FP
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLDKYEFP 164
>sp|Q21RV6|EFTU2_RHOFD Elongation factor Tu 2 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=tuf2 PE=3 SV=1
Length = 396
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
+D PM Q H+ +G +II L++ + ++++EL+ V +LLD+ FP
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLDKYEFP 164
>sp|Q21SF0|EFTU1_RHOFD Elongation factor Tu 1 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=tuf1 PE=3 SV=1
Length = 396
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
+D PM Q H+ +G +II L++ + ++++EL+ V +LLD+ FP
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLDKYEFP 164
>sp|A4XZ92|EFTU_PSEMY Elongation factor Tu OS=Pseudomonas mendocina (strain ymp) GN=tuf
PE=3 SV=1
Length = 397
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q123F6|EFTU_POLSJ Elongation factor Tu OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=tuf1 PE=3 SV=1
Length = 396
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91
+D PM Q H+ +G +II L++ + ++++EL+ V +LLD+ FP
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDAELLELVEMEVRELLDKYDFP 164
>sp|Q4K519|EFTU_PSEF5 Elongation factor Tu OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=tuf1 PE=3 SV=1
Length = 397
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +I+ L++ + ++++EL+ V DLL FP +D
Sbjct: 109 ADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLSTYDFPGDD 167
>sp|Q38WR7|EFTU_LACSS Elongation factor Tu OS=Lactobacillus sakei subsp. sakei (strain
23K) GN=tuf PE=3 SV=1
Length = 396
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 36 SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94
+D PM Q H+ + +G +II L++T L ++ +L+ V +LL + FP +D
Sbjct: 110 TDGPMPQTREHILLAHQVGVDYIIVFLNKTDLVDDDELTDLVEMEVRELLSEYDFPGDD 168
>sp|Q6C1B5|TFB5_YARLI RNA polymerase II transcription factor B subunit 5 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB5 PE=3 SV=1
Length = 75
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C D +K ++++D + I+ +LD+THL I ++E++ +++ +L +
Sbjct: 6 RGVLIEC--DPSIKALIVNIDSSQ---HNIILDELDDTHLMIHPSMVEVVKQKLNKMLAE 60
Query: 88 ISFPINDR 95
++ N+
Sbjct: 61 NTYNPNEE 68
>sp|P0C0X3|TFB5_CANAL RNA polymerase II transcription factor B subunit 5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=TFB5 PE=3
SV=1
Length = 69
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 27 GRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLD 86
+ ++ C D +K ++ +D +++ I+++LDETHL I D + + + ++ LL
Sbjct: 5 SKGVLVQC--DPSIKALIIQIDSSSS---GIILEELDETHLLIQHDKVNFVKSELNRLLS 59
Query: 87 Q 87
+
Sbjct: 60 K 60
>sp|Q4HYI0|TFB5_GIBZE RNA polymerase II transcription factor B subunit 5 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=TFB5 PE=3 SV=3
Length = 71
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 28 RRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQ 87
R +I C D +K ++ +D N +II+DLD+ + + +++ +L +++D L +
Sbjct: 6 RGVLIEC--DPSIKSIIVSIDSAN---HDYIIEDLDDERVVVKENMVSMLKAKLEDRLKE 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.146 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,605,696
Number of Sequences: 539616
Number of extensions: 1253158
Number of successful extensions: 4200
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3776
Number of HSP's gapped (non-prelim): 433
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)