Query psy2291
Match_columns 96
No_of_seqs 102 out of 140
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 20:57:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06331 Tbf5: Transcription f 100.0 1.4E-33 3E-38 183.9 5.2 68 23-94 1-68 (68)
2 KOG3451|consensus 100.0 1.2E-30 2.7E-35 171.5 7.7 71 23-95 1-71 (71)
3 KOG3451|consensus 79.1 1.2 2.6E-05 29.7 1.4 25 10-34 13-37 (71)
4 PF08854 DUF1824: Domain of un 69.2 3.2 7E-05 30.0 1.6 19 17-35 88-106 (125)
5 PF08234 Spindle_Spc25: Chromo 67.0 6.3 0.00014 25.1 2.5 39 10-52 19-60 (74)
6 PF12392 DUF3656: Collagenase 55.4 41 0.00088 22.8 5.1 44 43-88 71-117 (122)
7 PTZ00061 DNA-directed RNA poly 54.3 13 0.00029 28.9 2.8 56 8-70 77-133 (205)
8 PF13625 Helicase_C_3: Helicas 51.2 12 0.00026 25.7 1.9 34 29-67 96-129 (129)
9 PF09633 DUF2023: Protein of u 44.4 47 0.001 23.4 4.0 69 15-87 2-74 (101)
10 PF02388 FemAB: FemAB family; 34.8 11 0.00024 30.9 -0.4 35 5-41 73-107 (406)
11 PF01990 ATP-synt_F: ATP synth 33.4 40 0.00086 21.9 2.2 27 65-91 44-70 (95)
12 PLN02517 phosphatidylcholine-s 32.2 24 0.00051 31.8 1.2 22 1-22 489-511 (642)
13 KOG2369|consensus 32.1 24 0.00053 30.7 1.2 20 1-20 339-359 (473)
14 TIGR01680 Veg_Stor_Prot vegeta 29.6 54 0.0012 26.5 2.7 31 37-67 83-113 (275)
15 COG4551 Predicted protein tyro 26.9 53 0.0011 23.4 2.0 33 54-86 75-107 (109)
16 COG4126 Hydantoin racemase [Am 26.9 54 0.0012 26.2 2.2 16 27-42 70-85 (230)
17 COG1436 NtpG Archaeal/vacuolar 25.4 83 0.0018 21.8 2.8 43 37-91 30-74 (104)
18 KOG3293|consensus 24.5 89 0.0019 23.1 2.9 69 15-86 14-88 (134)
19 PLN03111 DNA-directed RNA poly 24.5 60 0.0013 25.3 2.1 56 8-70 78-134 (206)
20 TIGR02830 spore_III_AG stage I 22.9 1E+02 0.0023 23.4 3.1 27 20-46 139-167 (186)
21 KOG0667|consensus 21.5 1.8E+02 0.0039 26.1 4.7 47 43-92 235-285 (586)
22 PF02450 LCAT: Lecithin:choles 20.7 50 0.0011 26.8 1.1 19 1-19 298-317 (389)
No 1
>PF06331 Tbf5: Transcription factor TFIIH complex subunit Tfb5; InterPro: IPR009400 This entry represents nucleotide excision repair (NER) proteins, such as TTDA subunit of TFIIH basal transcription factor complex (also known as subunit 5 of RNA polymerase II transcription factor B), and Rex1. These proteins have a structural motif consisting of a 2-layer sandwich structure with an alpha/beta plait topology. Nucleotide excision repair is a major pathway for repairing UV light-induced DNA damage in most organisms. Transcription/repair factor IIH (TFIIH) is essential for RNA polymerase II transcription and nucleotide excision repair. The TFIIH complex consists of ten subunits: ERCC2, ERCC3, GTF2H1, GTF2H2, GTF2H3, GTF2H4, GTF2H5, MNAT1, CDK7 and CCNH. Defects in GTF2H5 cause the disease trichothiodystrophy (TTD), therefore GTF2H5 (general transcription factor 2H subunit 5) is also known as the TTD group A (TTDA) subunit (and as Tfb5) []. The TTDA subunit is responsible for the DNA repair function of the complex. TTDA is present both bound to TFIIH, and as a free fraction that shuffles between the cytoplasm and nucleus; induction of NER-type DNA lesions shifts the balance towards TTDA's more stable association with TFIIH []. TTDA is also required for the stability of the TFIIH complex and for the presence of normal levels of TFIIH in the cell. REX1 (required for excision 1) is required for DNA repair in the single-celled, photosynthetic algae Chlamydomonas reinhardtii [], and has homologues in other eukaryotes.; GO: 0003677 DNA binding, 0006289 nucleotide-excision repair; PDB: 2JNJ_B 1YDL_A 3DGP_B 3DOM_B.
Probab=100.00 E-value=1.4e-33 Score=183.89 Aligned_cols=68 Identities=47% Similarity=0.854 Sum_probs=60.4
Q ss_pred cccccceeEEeecCCHHHHHHHHHhhccCCCCCCeEEEecCCceEEEccchHHHHHHHHHHHHhhcCCCCCC
Q psy2291 23 TNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPIND 94 (96)
Q Consensus 23 ~~~~~kGvLI~C~~DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHLfVk~~~v~~Lk~~l~~~ld~nsy~~~~ 94 (96)
|++|.|||||+| ||||||||++||+++++| |||+|||||||||+++++++||+||+++|++|+|+++|
T Consensus 1 Mv~a~kGvLv~C--Dpa~Kq~il~ld~~~~~~--FIIedLDdthlfV~~~~v~~lk~~l~~~l~~n~~~~~~ 68 (68)
T PF06331_consen 1 MVNAIKGVLVEC--DPAIKQFILHLDESMPHG--FIIEDLDDTHLFVKPDVVEMLKEELDELLDQNSYPPTE 68 (68)
T ss_dssp --EEEEEEEEES---HHHHHHHHHHHHHCCTS--SEEEEECTTEEEE-CCCHHHHHHHHHHCCCC-TTTTS-
T ss_pred CCceeeeEEEEc--CHHHHHHHHHHhcCCCCC--eEEEEcCCCeEEEcHhHHHHHHHHHHHHHHhcCCCCCC
Confidence 678999999999 999999999999988876 99999999999999999999999999999999999875
No 2
>KOG3451|consensus
Probab=99.97 E-value=1.2e-30 Score=171.50 Aligned_cols=71 Identities=28% Similarity=0.691 Sum_probs=68.3
Q ss_pred cccccceeEEeecCCHHHHHHHHHhhccCCCCCCeEEEecCCceEEEccchHHHHHHHHHHHHhhcCCCCCCC
Q psy2291 23 TNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFPINDR 95 (96)
Q Consensus 23 ~~~~~kGvLI~C~~DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHLfVk~~~v~~Lk~~l~~~ld~nsy~~~~~ 95 (96)
|++|.|||||+| |||+||+|+++|+++++|.+|||++||||||||+|++++++|.+|+++|++|+|++.++
T Consensus 1 Mvna~KGvlV~c--Dp~~kqlilnmd~sm~~~skfii~eLDdthLfV~p~~vemvk~~le~~le~n~ye~~~e 71 (71)
T KOG3451|consen 1 MVNAKKGVLVTC--DPAFKQLILNMDDSMQLGSKFIIEELDDTHLFVNPSIVEMVKNELERILENNNYEAVDE 71 (71)
T ss_pred CCccccceEEec--ChhHHHHhhhccccCCCCCCeeEEEeccceeeecHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 578999999999 99999999999999999999999999999999999999999999999999999988764
No 3
>KOG3451|consensus
Probab=79.14 E-value=1.2 Score=29.66 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.7
Q ss_pred CcchhhhheeccccccccceeEEee
Q psy2291 10 DKPMKQFLLHLDETNTLGRRFIIHC 34 (96)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~kGvLI~C 34 (96)
+.++|||.+|+|+-..++.|+.|+=
T Consensus 13 Dp~~kqlilnmd~sm~~~skfii~e 37 (71)
T KOG3451|consen 13 DPAFKQLILNMDDSMQLGSKFIIEE 37 (71)
T ss_pred ChhHHHHhhhccccCCCCCCeeEEE
Confidence 5689999999999999999999885
No 4
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=69.23 E-value=3.2 Score=29.96 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=12.1
Q ss_pred heeccccccccceeEEeec
Q psy2291 17 LLHLDETNTLGRRFIIHCF 35 (96)
Q Consensus 17 ~~~l~~~~~~~kGvLI~C~ 35 (96)
..+++-+.-..|||||+|-
T Consensus 88 ~~yv~~y~G~~rGVLiScq 106 (125)
T PF08854_consen 88 SCYVRSYTGLGRGVLISCQ 106 (125)
T ss_dssp -EEEEE--S--BEEEEEEE
T ss_pred cEEEeecCCccceEEEEec
Confidence 4678888999999999993
No 5
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=66.98 E-value=6.3 Score=25.14 Aligned_cols=39 Identities=28% Similarity=0.596 Sum_probs=17.6
Q ss_pred CcchhhhheeccccccccceeEEeecCCHHH---HHHHHHhhccCC
Q psy2291 10 DKPMKQFLLHLDETNTLGRRFIIHCFSDKPM---KQFLLHLDETNT 52 (96)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~kGvLI~C~~Dpai---Kq~Il~Lde~~~ 52 (96)
..+.|.|...|+ ....+..+++| +|++ .+++-.||+++.
T Consensus 19 ~d~~re~s~~l~--i~~~~Y~v~~~--~P~l~~l~~l~~~LN~t~d 60 (74)
T PF08234_consen 19 NDPDREFSFTLD--ISSDKYEVISC--DPPLEDLDELVDELNKTND 60 (74)
T ss_dssp TBSSS-EEEEEE---SSS-EE------------THHHHHHHHH---
T ss_pred CCCCceEEEEEE--ECCCeEEEEEe--cCCcchHHHHHHHHhccCC
Confidence 456677777776 33378899999 9987 577888887764
No 6
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=55.37 E-value=41 Score=22.78 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHhhccCCCCCCeEEEecC---CceEEEccchHHHHHHHHHHHHhhc
Q psy2291 43 FLLHLDETNTLGRRFIIQDLD---ETHLFISSDVIELLMTRVDDLLDQI 88 (96)
Q Consensus 43 ~Il~Lde~~~~~~kFIIeDLD---dtHLfVk~~~v~~Lk~~l~~~ld~n 88 (96)
+.-+|...- +..|.+++++ +.-+||..+.++.||++.-+.|++.
T Consensus 71 i~~ql~KlG--~T~F~~~~i~i~~~~~lFlP~s~LN~lRRea~e~L~~~ 117 (122)
T PF12392_consen 71 IRKQLSKLG--NTPFELENIEIDLDEGLFLPISELNELRREAVEKLEEK 117 (122)
T ss_pred HHHHHHhhC--CCcEEEEEEEEEcCCCEEEEHHHHHHHHHHHHHHHHHH
Confidence 444444332 3369999987 7899999999999999988887753
No 7
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=54.29 E-value=13 Score=28.92 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=38.9
Q ss_pred cCCcchhhhheeccccccccceeEEeec-CCHHHHHHHHHhhccCCCCCCeEEEecCCceEEEc
Q psy2291 8 VDDKPMKQFLLHLDETNTLGRRFIIHCF-SDKPMKQFLLHLDETNTLGRRFIIQDLDETHLFIS 70 (96)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~kGvLI~C~-~DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHLfVk 70 (96)
+.-+++|.|..++.+. +..+|+||... --|+.|+.|..+ .+ +|.||-.-++-|+|+
T Consensus 77 vgvk~ir~~~~~~~~~-n~~r~IlV~q~~ltp~Ar~~i~~~---~~---~~~iE~F~E~eLlvn 133 (205)
T PTZ00061 77 TGVKPIRELTEKMEEH-DIQRAILVTQNVLTPFAKDAILEA---AP---RHIIENFLETELLVN 133 (205)
T ss_pred CCHHHHHHHHHHHhhc-CCceEEEEECCCCCHHHHHHHHhh---CC---CcEEEEeeehheEEe
Confidence 4557899999987754 78899999972 135667777666 33 577877666655554
No 8
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=51.20 E-value=12 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=27.2
Q ss_pred eeEEeecCCHHHHHHHHHhhccCCCCCCeEEEecCCceE
Q psy2291 29 RFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHL 67 (96)
Q Consensus 29 GvLI~C~~DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHL 67 (96)
+++++|. |+.+-+-|++.-+-. +++.+.+.+|++
T Consensus 96 ~~~l~~~-d~~~l~~l~~~~~~~----~~~~~~~~p~v~ 129 (129)
T PF13625_consen 96 AYLLECD-DPELLDELLADPELA----KLILRRIAPTVF 129 (129)
T ss_pred eEEEEEC-CHHHHHHHHhChhhh----hhhccccCCCcC
Confidence 8899996 999988888755555 689999988763
No 9
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=44.36 E-value=47 Score=23.41 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=45.0
Q ss_pred hhheecccccccccee-EEeecCCHHHHHHHHHhhccCCCCCCeEEEecCCceE---EEccchHHHHHHHHHHHHhh
Q psy2291 15 QFLLHLDETNTLGRRF-IIHCFSDKPMKQFLLHLDETNTLGRRFIIQDLDETHL---FISSDVIELLMTRVDDLLDQ 87 (96)
Q Consensus 15 ~~~~~l~~~~~~~kGv-LI~C~~DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHL---fVk~~~v~~Lk~~l~~~ld~ 87 (96)
=|.=|++|+.+-.|-. |.++ +--..-..+..|..+.- .|+|+.+...++ |=++++++.++.=+.+=|.+
T Consensus 2 vf~hhIYEy~KGvR~LvL~T~-~~~~~~~~~~rL~~~~I---~y~iq~v~~~~iNlFFG~~~Ci~~ir~i~~~pL~~ 74 (101)
T PF09633_consen 2 VFMHHIYEYKKGVRQLVLHTL-PKRYEEFAIARLERQGI---DYFIQPVGNGKINLFFGRKECIEVIRSIVTRPLNE 74 (101)
T ss_dssp HHHHHHHHHHCTS-SEEEEEE-EGGGHHHHHHHHHHTT-----EEEEE-TSSEEEEEEE-HHHHHHHHHHHTS-GGG
T ss_pred chHHHHHHhhhhhhhHhhhhC-CHhhHHHHHHHHHHCCC---CEEEEEcCCCCEEEEECCHHHHHHHHHHhCCchhh
Confidence 3667888887766654 4455 34455566777888777 899999998776 44899999999877654443
No 10
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=34.80 E-value=11 Score=30.86 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=25.8
Q ss_pred eeccCCcchhhhheeccccccccceeEEeecCCHHHH
Q psy2291 5 CNYVDDKPMKQFLLHLDETNTLGRRFIIHCFSDKPMK 41 (96)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~kGvLI~C~~DpaiK 41 (96)
|.|.|....++|+-.|..+.+..++++|++ ||++-
T Consensus 73 ~d~~d~ell~~f~~~Lk~~akk~~a~~lri--dP~~~ 107 (406)
T PF02388_consen 73 MDYSDEELLEFFLEELKKYAKKKRALFLRI--DPNVI 107 (406)
T ss_dssp C-TT-HHHHHHHHHHHHHHHCTTTEEEEEE----S-E
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCEEEEEE--eCchh
Confidence 445566678999999999999999999999 99763
No 11
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=33.37 E-value=40 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=23.4
Q ss_pred ceEEEccchHHHHHHHHHHHHhhcCCC
Q psy2291 65 THLFISSDVIELLMTRVDDLLDQISFP 91 (96)
Q Consensus 65 tHLfVk~~~v~~Lk~~l~~~ld~nsy~ 91 (96)
.-++|.++..+.++.++.+++.++.+|
T Consensus 44 gIIii~e~~~~~~~~~l~~~~~~~~~P 70 (95)
T PF01990_consen 44 GIIIITEDLAEKIRDELDEYREESSLP 70 (95)
T ss_dssp EEEEEEHHHHTTHHHHHHHHHHTSSSS
T ss_pred cEEEeeHHHHHHHHHHHHHHHhccCCc
Confidence 357899999999999999999887765
No 12
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=32.17 E-value=24 Score=31.85 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=16.0
Q ss_pred CeeeeeccCCc-chhhhheeccc
Q psy2291 1 MEIYCNYVDDK-PMKQFLLHLDE 22 (96)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~l~~ 22 (96)
|+|||.||=-+ +||-+.-++.+
T Consensus 489 mkIyC~YGVG~PTERaY~Y~~~~ 511 (642)
T PLN02517 489 MEIYSLYGVGIPTERSYVYKLSP 511 (642)
T ss_pred ceEEEEecCCCCccceeeeccCC
Confidence 89999998655 56766665553
No 13
>KOG2369|consensus
Probab=32.13 E-value=24 Score=30.66 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=13.9
Q ss_pred CeeeeeccCCcc-hhhhheec
Q psy2291 1 MEIYCNYVDDKP-MKQFLLHL 20 (96)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~l 20 (96)
|++||.||..-+ ++-|---+
T Consensus 339 v~vyCiYGvgvpTe~~y~y~~ 359 (473)
T KOG2369|consen 339 VEVYCIYGVGVPTERAYYYGL 359 (473)
T ss_pred ceEEEeccCCCCCcceeEecc
Confidence 799999999865 44444333
No 14
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=29.60 E-value=54 Score=26.53 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhhccCCCCCCeEEEecCCceE
Q psy2291 37 DKPMKQFLLHLDETNTLGRRFIIQDLDETHL 67 (96)
Q Consensus 37 DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHL 67 (96)
+..+.+.+..+.+....|++-||-|||||-|
T Consensus 83 ~~v~~~a~~y~~~~~~~~~dA~V~DIDET~L 113 (275)
T TIGR01680 83 KTVNQQAYFFARDLEVHEKDTFLFNIDGTAL 113 (275)
T ss_pred HHHHHHHHHHHHhCcCCCCCEEEEECccccc
Confidence 4556666777766555688999999999976
No 15
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=26.89 E-value=53 Score=23.44 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=29.4
Q ss_pred CCCeEEEecCCceEEEccchHHHHHHHHHHHHh
Q psy2291 54 GRRFIIQDLDETHLFISSDVIELLMTRVDDLLD 86 (96)
Q Consensus 54 ~~kFIIeDLDdtHLfVk~~~v~~Lk~~l~~~ld 86 (96)
|++.|--|+=|...|.+++.++.|++++.-+|.
T Consensus 75 ~kRviCLDIPDdy~yMq~eLi~lLkrkv~p~L~ 107 (109)
T COG4551 75 GKRVICLDIPDDYEYMQPELIDLLKRKVGPYLR 107 (109)
T ss_pred CCeEEEEeCCchHhhcCHHHHHHHHHhhhhhhc
Confidence 667888899999999999999999999987764
No 16
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=26.87 E-value=54 Score=26.16 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=12.5
Q ss_pred cceeEEeecCCHHHHH
Q psy2291 27 GRRFIIHCFSDKPMKQ 42 (96)
Q Consensus 27 ~kGvLI~C~~DpaiKq 42 (96)
.-|++|.||+||.+-.
T Consensus 70 vdaiiIaCf~DPgl~~ 85 (230)
T COG4126 70 VDAIIIACFSDPGLAA 85 (230)
T ss_pred CcEEEEEecCChHHHH
Confidence 4588999999976543
No 17
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=25.41 E-value=83 Score=21.79 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=32.7
Q ss_pred CH--HHHHHHHHhhccCCCCCCeEEEecCCceEEEccchHHHHHHHHHHHHhhcCCC
Q psy2291 37 DK--PMKQFLLHLDETNTLGRRFIIQDLDETHLFISSDVIELLMTRVDDLLDQISFP 91 (96)
Q Consensus 37 Dp--aiKq~Il~Lde~~~~~~kFIIeDLDdtHLfVk~~~v~~Lk~~l~~~ld~nsy~ 91 (96)
+| ..++++..|-+.. =.-++|.++..+.|++++.++..++..|
T Consensus 30 ~~~~~~~~~~~~l~~~~------------~~iIiite~~a~~i~~~i~~~~~~~~~P 74 (104)
T COG1436 30 DEEDELRAALRVLAEDD------------VGIILITEDLAEKIREEIRRIIRSSVLP 74 (104)
T ss_pred ChhHHHHHHHHhhccCC------------ceEEEEeHHHHhhhHHHHHHHhhccCcc
Confidence 56 4777777765542 2356899999999999999998777654
No 18
>KOG3293|consensus
Probab=24.51 E-value=89 Score=23.06 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=42.6
Q ss_pred hhheeccccccccceeEEeecCCHHHHHHHHHhhccCCCCCCeEEE-e--cCC---ceEEEccchHHHHHHHHHHHHh
Q psy2291 15 QFLLHLDETNTLGRRFIIHCFSDKPMKQFLLHLDETNTLGRRFIIQ-D--LDE---THLFISSDVIELLMTRVDDLLD 86 (96)
Q Consensus 15 ~~~~~l~~~~~~~kGvLI~C~~DpaiKq~Il~Lde~~~~~~kFIIe-D--LDd---tHLfVk~~~v~~Lk~~l~~~ld 86 (96)
+.++.|+.- --.+|.|+.| |-.|-=-+...=.+...|.+|.+- + |=- ..|=|+.++++.+|++...--.
T Consensus 14 pmlvELKNg-et~nGhL~~c--D~wMNl~L~~Vi~ts~Dgdkf~r~pEcYirGttIkylri~d~iid~vkee~~~~~~ 88 (134)
T KOG3293|consen 14 PMLVELKNG-ETYNGHLVNC--DNWMNLHLREVICTSEDGDKFFRMPECYIRGTTIKYLRIPDEIIDKVKEECVSNNR 88 (134)
T ss_pred eEEEEecCC-CEecceeecc--hhhhhcchheeEEeccCCCceeecceeEEecceeEEEeccHHHHHHHHHHHHHhcc
Confidence 345555532 2357999999 999864444444455566676654 2 211 2345668899999988876433
No 19
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=24.47 E-value=60 Score=25.32 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=38.7
Q ss_pred cCCcchhhhheeccccccccceeEEeecC-CHHHHHHHHHhhccCCCCCCeEEEecCCceEEEc
Q psy2291 8 VDDKPMKQFLLHLDETNTLGRRFIIHCFS-DKPMKQFLLHLDETNTLGRRFIIQDLDETHLFIS 70 (96)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~kGvLI~C~~-DpaiKq~Il~Lde~~~~~~kFIIeDLDdtHLfVk 70 (96)
+.-+++|.|..++. .-+..+|+||.... -|..|+.|..+. + +|.||-..++-|+|+
T Consensus 78 vgvk~ir~~~~~~~-~e~~~r~IlV~q~~itp~A~~~i~~~~---~---~~~iE~F~e~eLlvn 134 (206)
T PLN03111 78 VGVKTIKTYAERMK-DENVSRAILVLQSKLTPFAKQALSEFN---S---KFKIEVFQETELLVN 134 (206)
T ss_pred cCHHHHHHHHHHHh-hcCcceEEEEECCCCCHHHHHHHHhhC---c---CceEEEeehhHheec
Confidence 44578899998766 45688899998721 357777777763 3 678887766655554
No 20
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=22.89 E-value=1e+02 Score=23.43 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=21.3
Q ss_pred ccccccccceeEEee--cCCHHHHHHHHH
Q psy2291 20 LDETNTLGRRFIIHC--FSDKPMKQFLLH 46 (96)
Q Consensus 20 l~~~~~~~kGvLI~C--~~DpaiKq~Il~ 46 (96)
+.+..+-++||||-| +.||.+|+-|..
T Consensus 139 ~ke~~P~I~GVlVVAeGa~~~~Vk~~I~~ 167 (186)
T TIGR02830 139 LKTEKPEIRGVLVVAEGAENPQIKYRIVE 167 (186)
T ss_pred EEEecCCceEEEEEeeCCCCHHHHHHHHH
Confidence 345678999999998 567888888764
No 21
>KOG0667|consensus
Probab=21.49 E-value=1.8e+02 Score=26.07 Aligned_cols=47 Identities=34% Similarity=0.421 Sum_probs=38.5
Q ss_pred HHHHhhccCCCCCCeEEEecC----CceEEEccchHHHHHHHHHHHHhhcCCCC
Q psy2291 43 FLLHLDETNTLGRRFIIQDLD----ETHLFISSDVIELLMTRVDDLLDQISFPI 92 (96)
Q Consensus 43 ~Il~Lde~~~~~~kFIIeDLD----dtHLfVk~~~v~~Lk~~l~~~ld~nsy~~ 92 (96)
+|-+||...+..+.-||.-+| -.|++| +.|.|..-|-+++.+|.|..
T Consensus 235 iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci---VfELL~~NLYellK~n~f~G 285 (586)
T KOG0667|consen 235 ILELLNKHDPDDKYNIVRMLDYFYFRNHLCI---VFELLSTNLYELLKNNKFRG 285 (586)
T ss_pred HHHHHhccCCCCCeeEEEeeeccccccceee---eehhhhhhHHHHHHhcCCCC
Confidence 567788777777788999998 567777 46788999999999999875
No 22
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=20.70 E-value=50 Score=26.78 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=14.5
Q ss_pred Ceeeeecc-CCcchhhhhee
Q psy2291 1 MEIYCNYV-DDKPMKQFLLH 19 (96)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~ 19 (96)
|+|||.|| .-.++++|.-.
T Consensus 298 v~iyCiYG~g~pTe~~y~Y~ 317 (389)
T PF02450_consen 298 VKIYCIYGVGVPTERSYYYK 317 (389)
T ss_pred ceEEEeCCCCCCCcceEEEe
Confidence 68999999 55677777663
Done!